Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: GSE

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GSE

Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
12 versions
Latest release: almost 2 years ago
5 dependent packages
579 downloads last month

Papers Mentioning GSE 20

Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing
Cited by: 3
Author(s): Christopher Lee, Kai Wang, Tingting Qin, Maureen A. Sartor
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.60562

Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra
Cited by: 20
Author(s): Jack Cazet, Adrienne Cho, Celina E. Juliano
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-11812-x

Concordant and discordant gene expression patterns in mouse strains identify best-fit animal model for human tuberculosis
Cited by: 32
Author(s): Teresa Domaszewska, Lisa Scheuermann, Karin Hahnke, Hans Mollenkopf, Anca Dorhoi, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 4
Published: about 7 years ago

10.3389/fbioe.2018.00121

Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress
Cited by: 15
Author(s): İbrahim Koç, İsa Öner Yüksel, Gustavo Caetano‐Anollés
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2105-9-362

Testing gene set enrichment for subset of genes: Sub-GSE
Cited by: 17
Author(s): Xiting Yan, Fengzhu Sun
Software Mentions: 3
Published: about 16 years ago

10.3389/fneur.2018.00266

Deconvolution of Human Brain Cell Type Transcriptomes Unraveled Microglia-Specific Potential Biomarkers
Cited by: 9
Author(s): Rajagopal Ayana, Shailja Singh, Soumya Pati
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.01687

cano-wgMLST_BacCompare: A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis
Cited by: 19
Author(s): Yen‐Yi Liu, Ji-Wei Lin, Chih-Chieh Chen
Software Mentions: 2
Published: over 5 years ago

10.3390/healthcare9040429

Psychological Distress among Undergraduate Dental Students in Saudi Arabia and Its Coping Strategies—A Systematic Review
Cited by: 8
Author(s): Sanjeev Khanagar, Ali Al-Ehaideb, Ahmed Jamleh, Khansa Taha Ababneh, Prabhadevi C Maganur, Satish Vishwanathaiah, Mohammed Awawdeh, Sachin Naik, Abdulaziz A. Al‐Kheraif, Shilpa Bhandi, Alessio Zanza, Luca Testarelli, Shankargouda Patil
Software Mentions: 2
Published: over 3 years ago

10.1038/srep42105

Prediction of biomarkers of oral squamous cell carcinoma using microarray technology
Cited by: 46
Author(s): Guang Li, Xian Li, Meng Yang, Lvzi Xu, Shixiong Deng, Longke Ran
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-015-2279-5

Dintor: functional annotation of genomic and proteomic data
Cited by: 10
Author(s): Christian X. Weichenberger, Hagen Blankenburg, Antonia Palermo, Yuri D’Elia, Eva König, Erik Bernstein, Francisco S. Domingues
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-13-S3-S9

Sensitive detection of pathway perturbations in cancers
Cited by: 4
Author(s): Corban G. Rivera, Brett M. Tyler, T. M. Murali
Software Mentions: 1
Published: over 12 years ago

10.1186/1297-9686-42-15

Genetics Selection Evolution: news for the period January 2009 - May 2010 and editorial announcements
Cited by: 0
Author(s): Hélène Hayes, Didier Boichard
Software Mentions: 1
Published: over 14 years ago

10.1186/s12711-019-0504-4

GSE’s 50th anniversary: where do we go from now?
Cited by: 0
Author(s): Didier Boichard, Jack C. M. Dekkers, Hélène Hayes, Julius van der Werf, H. Bovenhuis, M.P.L. Calus, M.A.M. Groenen
Software Mentions: 1
Published: about 5 years ago

10.1186/gb-2008-9-8-r126

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
Cited by: 55
Author(s): Divya Mathur, Timothy Danford, Laurie A. Boyer, Richard A. Young, David K. Gifford, Rudolf Jaenisch
Software Mentions: 1
Published: almost 17 years ago

10.1007/s11214-021-00795-x

Pre-Flight Calibration of the Mars 2020 Rover Mastcam Zoom (Mastcam-Z) Multispectral, Stereoscopic Imager
Cited by: 29
Author(s): Alexander G. Hayes, P. Corlies, Christian Tate, M. Barrington, James F. Bell, J. N. Maki, M. A. Caplinger, M. A. Ravine, K. M. Kinch, K. E. Herkenhoff, B. Horgan, J. R. Johnson, M. T. Lemmon, Gerhard Paar, M. S. Rice, Elsa Jensen, Tex Kubacki, E. A. Cloutis, R. Deen, B. L. Ehlmann, Emily Lakdawalla, Robert Sullivan, A. Winhold, Alexis Parkinson, Zachary Bailey, Jason Van Beek, P. Caballo-Perucha, E. Cisneros, Darian T. Dixon, Christopher Donaldson, Ole Bjarlin Jensen, J. C. Kuik, Kristiana Lapo, Angela Magee, Marco Merusi, J. Mollerup, N. A. Scudder, C. H. Seeger, Evan Stanish, M. Starr, Mark Thompson, Nathalie Turenne, K. Winchell
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep23984

Transcriptome sequencing reveals e-cigarette vapor and mainstream-smoke from tobacco cigarettes activate different gene expression profiles in human bronchial epithelial cells
Cited by: 69
Author(s): Yifei Shen, Michael J. Wolkowicz, Tatyana I. Kotova, Lonjiang Fan, Michael P. Timko
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-12-278

ReadDB Provides Efficient Storage for Mapped Short Reads
Cited by: 0
Author(s): P. Alexander Rolfe, David K. Gifford
Software Mentions: 1
Published: over 13 years ago

10.3389/fdata.2021.622106

Search Engine Gender Bias
Cited by: 3
Author(s): Fons Wijnhoven, Jeanna van Haren
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0039918

Evaluating the Effects of Cutoffs and Treatment of Long-range Electrostatics in Protein Folding Simulations
Cited by: 79
Author(s): Stefano Piana, Kresten Lindorff‐Larsen, Robert M. Dirks, John K. Salmon, Ron O. Dror, David E. Shaw
Software Mentions: 1
Published: over 12 years ago

10.3390/bioengineering8090122

Multiscale Entropy Analysis of Heart Rate Variability in Neonatal Patients with and without Seizures
Cited by: 7
Author(s): Lorenzo Frassineti, Antonio Lanatà, Benedetta Olmi, Claudia Manfredi
Software Mentions: 1
Published: about 3 years ago