cran: GSA | Projects | Ecosyste.ms: Papers

10.1186/s12864-017-3616-7

Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence
Cited by: 13
Author(s): Biju Joseph Ampattu, Laura Hagmann, Chunguang Liang, Marcus Dittrich, Andreas Schlüter, Jochen Blom, Elizaveta Krol, Alexander Goesmann, Anke Becker, Thomas Dandekar, Tobias Müller, Christoph Schoen
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-015-1515-3

The uniform-score gene set analysis for identifying common pathways associated with different diabetes traits
Cited by: 4
Author(s): Hao Mei, Lianna Li, Shijian Liu, Fan Jiang, Michael Griswold, Thomas H. Mosley
Software Mentions: 3
Published: over 9 years ago

10.1186/1471-2164-10-342

Gene expression profile of rat left ventricles reveals persisting changes following chronic mild exercise protocol: implications for cardioprotection
Cited by: 23
Author(s): Betti Giusti, Marina Marini, Luciana Rossi, Ilaria Lapini, Alberto Magi, Andrea Capalbo, Rosa Lapalombella, Simona di Tullio, Michele Samaja, Fabio Esposito, V. Margonato, Maria Boddi, Rosanna Abbate, Arsenio Veicsteinas
Software Mentions: 3
Published: over 15 years ago

10.1186/1471-2164-10-26

A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets
Cited by: 8
Author(s): Chien Yi Tung, Chih Hung Jen, Ming Hsu, Hsei Wei Wang, Chi Lin
Software Mentions: 3
Published: over 15 years ago

10.1186/1755-8794-1-38

Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males
Cited by: 13
Author(s): Peter C. Charles, Brian D Alder, Eleanor Hilliard, Jonathan C. Schisler, Robert E. Lineberger, Joel S. Parker, Sabeen Mapara, Samuel S. Wu, Andrea L. Portbury, Cam Patterson, George A. Stouffer
Software Mentions: 3
Published: about 16 years ago

10.1093/bioinformatics/bty607

Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models
Cited by: 19
Author(s): Olivia Eriksson, Alexandra Jauhiainen, Sara Maad Sasane, Andrei Kramer, Archana Padmanabhan Nair, Carolina Sartorius, Jeanette Hellgren Kotaleski
Software Mentions: 3
Published: about 6 years ago

10.3390/ma13112485

Simulation of Shape Memory Alloy (SMA)-Bias Spring Actuation for Self-Shaping Architecture: Investigation of Parametric Sensitivity
Cited by: 7
Author(s): Hangmo Yi
Software Mentions: 3
Published: over 4 years ago

10.1016/j.mex.2019.09.033

Matlab/R workflows to assess critical choices in Global Sensitivity Analysis using the SAFE toolbox
Cited by: 24
Author(s): Valentina Noacco, Fanny Sarrazin, Francesca Pianosi, Thorsten Wagener
Software Mentions: 3
Published: over 5 years ago

10.1186/1476-4598-9-74

Gene expression in nontumoral liver tissue and recurrence-free survival in hepatitis C virus-positive hepatocellular carcinoma
Cited by: 69
Author(s): Mai Tsuchiya, Joel S. Parker, Hiroshi Kono, Masanori Matsuda, Hideki Fujii, Ivan Rusyn
Software Mentions: 3
Published: over 14 years ago

10.7717/peerj.3151

An interview-based approach to assess sea turtle bycatch in Italian waters
Cited by: 26
Author(s): Alessandro Lucchetti, Claudio Vasapollo, Massimo Virgili
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pgen.1000812

Altered Gene Expression and DNA Damage in Peripheral Blood Cells from Friedreich's Ataxia Patients: Cellular Model of Pathology
Cited by: 95
Author(s): Astrid C. Haugen, Nicholas A. Di Prospero, Joel S. Parker, Rick D. Fannin, Jeff W. Chou, Joel N. Meyer, Christopher Halweg, Jennifer B. Collins, Alexandra Dürr, Kenneth H. Fischbeck, Bennett Van Houten
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pgen.1000115

An Integrated Approach for the Analysis of Biological Pathways using Mixed Models
Cited by: 59
Author(s): Lily Wang, Bing Zhang, Russell D. Wolfinger, Xi Chen
Software Mentions: 3
Published: about 16 years ago

10.1371/journal.pone.0010348

Multidimensional Gene Set Analysis of Genomic Data
Cited by: 71
Author(s): David Montaner, Joaquı́n Dopazo
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0119590

The Seascape of Demersal Fish Nursery Areas in the North Mediterranean Sea, a First Step Towards the Implementation of Spatial Planning for Trawl Fisheries
Cited by: 87
Author(s): Francesco Colloca, Germana Garofalo, Isabella Bitetto, Maria Teresa Facchini, Fabio Grati, Angela Martiradonna, Gianluca Mastrantonio, Nikolaos Nikolioudakis, Francesc Ordinas, Giuseppe Scarcella, George Tserpes, M.P. Tugores, Vasilis D. Valavanis, Roberto Carlucci, Fabio Fiorentino, María Cristina Follesa, M. Iglesias, Leyla Knittweis, Eugenia Lefkaditou, Giuseppe Lembo, Chiara Manfredi, Enric Massutí, Marie Louise Pace, Nadia Papadopoulou, Paolo Sartor, Christopher J. Smith, María Teresa Spedicato
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0200041

One size does not fit all: Caste and sex differences in the response of bumblebees (Bombus impatiens) to chronic oral neonicotinoid exposure
Cited by: 14
Author(s): Melissa W. Mobley, Robert J. Gegear
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0161259

A Hybrid Short-Term Traffic Flow Prediction Model Based on Singular Spectrum Analysis and Kernel Extreme Learning Machine
Cited by: 33
Author(s): Qiang Shang, Ciyun Lin, Zhaosheng Yang, Qichun Bing, Xiaofeng Zhou
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0070429

Identification and Validation of a Multigene Predictor of Recurrence in Primary Laryngeal Cancer
Cited by: 39
Author(s): Elena Fountzilas, Vassiliki Kotoula, Nikolaos Angouridakis, Ilias Karasmanis, Ralph M. Wirtz, Anastasia G Eleftheraki, Elke Veltrup, Konstantinos Markou, Angelos Nikolaou, Dimitrios Pectasides, George Fountzilas
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0063147

Enterococcus faecalis Infection Causes Inflammation, Intracellular Oxphos-Independent ROS Production, and DNA Damage in Human Gastric Cancer Cells
Cited by: 62
Author(s): Jesper A.B. Strickertsson, Claus Desler, Tomas Martin-Bertelsen, Ana Manuel Dantas Machado, Torkel Wadström, Ole Winther, Lene Juel Rasmussen, Lennart Friis‐Hansen
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0140526

Stochastic Leader Gravitational Search Algorithm for Enhanced Adaptive Beamforming Technique
Cited by: 6
Author(s): Soodabeh Darzi, Mohammad Tariqul Islam, Sieh Kiong Tiong, Salehin Kibria, Mandeep Singh Jit Singh
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0036504

Transcript Profiling Identifies Dynamic Gene Expression Patterns and an Important Role for Nrf2/Keap1 Pathway in the Developing Mouse Esophagus
Cited by: 27
Author(s): Hao Chen, Jianying Li, Haiyan Li, Yuhui Hu, Whitney Tevebaugh, Masayuki Yamamoto, Jianwen Que, Xiaoxin Chen
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0147338

Application of the Elitist-Mutated PSO and an Improved GSA to Estimate Parameters of Linear and Nonlinear Muskingum Flood Routing Models
Cited by: 10
Author(s): Ling Kang, Song Zhang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0139889

Gene-Set Local Hierarchical Clustering (GSLHC)—A Gene Set-Based Approach for Characterizing Bioactive Compounds in Terms of Biological Functional Groups
Cited by: 8
Author(s): Feng-Hsiang Chung, Jinhan Zhu, Tzu-Ting Hsu, Chueh-Lin Hsu, Hsueh-Chuan Liu, Hoong-Chien Lee
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0073953

Human Melanoma Cells Over-Express Extracellular Matrix 1 (ECM1) Which Is Regulated by TFAP2C
Cited by: 18
Author(s): Geeta Lal, Piedad Gómez Contreras, Mikhail V. Kulak, George W. Woodfield, Thomas B. Bair, Frederick E. Domann, Ronald J. Weigel
Software Mentions: 3
Published: about 11 years ago

10.3390/cancers13010158

Novel Epigenetic Eight-Gene Signature Predictive of Poor Prognosis and MSI-Like Phenotype in Human Metastatic Colorectal Carcinomas
Cited by: 12
Author(s): Valentina Condelli, Giovanni Calice, Alessandra Cassano, Michele Basso, Maria Grazia Rodriquenz, Angela Zupa, Francesca Maddalena, Fabiana Crispo, Michele Pietrafesa, Michele Aieta, Alessandro Sgambato, Giampaolo Tortora, Pietro Zoppoli, Matteo Landriscina
Software Mentions: 3
Published: over 3 years ago

10.3390/cancers13133148

Integrative Analysis of Next-Generation Sequencing for Next-Generation Cancer Research toward Artificial Intelligence
Cited by: 11
Author(s): Youngjun Park, Dominik Heider, Anne-Christin Hauschild
Software Mentions: 3
Published: about 3 years ago

10.1186/s13148-015-0073-5

Genome-wide blood DNA methylation alterations at regulatory elements and heterochromatic regions in monozygotic twins discordant for obesity and liver fat
Cited by: 66
Author(s): Miina Ollikainen, Khadeeja Ismail, Kristina Gervin, Anjuska Kyllönen, Antti Hakkarainen, Jesper Lundbom, Elina Järvinen, Jennifer R. Harris, Nina Lundbom, Aila Rissanen, Robert Lyle, Kirsi H. Pietiläinen, Jaakko Kaprio
Software Mentions: 3
Published: over 9 years ago

10.1155/2015/704301

Fuzzy Controller Design Using Evolutionary Techniques for Twin Rotor MIMO System: A Comparative Study
Cited by: 21
Author(s): Hashim A. Hashim, M. A. Abido
Software Mentions: 3
Published: over 9 years ago

10.1155/2018/7690435

A Water-Area Recognition Approach Based on “Tuned” Texture Mask and Cuckoo Search Algorithm
Cited by: 4
Author(s): Zhongwei Chen, Kangbo Peng, Hong‐Jian Lai, Yichao Wang, Xiaolong Wu, Zhifeng Xiao
Software Mentions: 3
Published: almost 6 years ago

10.1155/2016/8179670

A “Tuned” Mask Learnt Approach Based on Gravitational Search Algorithm
Cited by: 5
Author(s): Youchuan Wan, Mingwei Wang, Zhiwei Ye, Xudong Lai
Software Mentions: 3
Published: over 8 years ago

10.1155/2016/9063065

Training Feedforward Neural Networks Using Symbiotic Organisms Search Algorithm
Cited by: 55
Author(s): Haizhou Wu, Yongquan Zhou, Qifang Luo, Mohamed Abdel Basset
Software Mentions: 3
Published: over 8 years ago

10.1016/j.csbj.2021.06.040

A survey of direct-to-consumer genotype data, and quality control tool (GenomePrep) for research
Cited by: 6
Author(s): Chang Lu, Bastian Greshake Tzovaras, Julian Gough
Software Mentions: 3
Published: over 3 years ago

10.3390/e23070874

A Comparative Study of Common Nature-Inspired Algorithms for Continuous Function Optimization
Cited by: 26
Author(s): Zhenwu Wang, Chao Qin, Benting Wan, William Wei Song
Software Mentions: 3
Published: about 3 years ago

10.3390/e20030202

Global Reliability Sensitivity Analysis Based on Maximum Entropy and 2-Layer Polynomial Chaos Expansion
Cited by: 6
Author(s): Jianyu Zhao, Shengkui Zeng, Jianbin Guo, Shaohua Du
Software Mentions: 3
Published: over 6 years ago

10.3390/e23020257

An Improvised Machine Learning Model Based on Mutual Information Feature Selection Approach for Microbes Classification
Cited by: 11
Author(s): Anaahat Dhindsa, Sanjay Bhatia, Sunil Agrawal, Balwinder Singh Sohi
Software Mentions: 3
Published: over 3 years ago

10.12688/f1000research.17207.1

Recent advances in gene function prediction using context-specific coexpression networks in plants
Cited by: 16
Author(s): Chirag Gupta, Andy Pereira
Software Mentions: 3
Published: over 5 years ago

10.3389/fbioe.2020.01008

Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery
Cited by: 39
Author(s): Marina Julio Pinheiro, Nemailla Bonturi, Isma Belouah, Everson Alves Miranda, Petri‐Jaan Lahtvee
Software Mentions: 3
Published: about 4 years ago

10.3389/fbioe.2019.00234

Global Sensitivity Analysis of Metabolic Models for Phosphorus Accumulating Organisms in Enhanced Biological Phosphorus Removal
Cited by: 6
Author(s): Minh Nguyen Quang, Tim Rogers, Jan Hofman, Ana Lanham
Software Mentions: 3
Published: almost 5 years ago

10.3389/fendo.2021.723812

Simulation-Based Evaluation of Treatment Adjustment to Exercise in Type 1 Diabetes
Cited by: 8
Author(s): Julia Deichmann, Sara Bachmann, Marie‐Anne Burckhardt, Gabor Szinnai, Hans‐Michael Kaltenbach
Software Mentions: 3
Published: about 3 years ago

10.3389/fgene.2019.00598

SCIA: A Novel Gene Set Analysis Applicable to Data With Different Characteristics
Cited by: 2
Author(s): Yiqun Li, Ying Wu, Xiaohan Zhang, Yongping Bai, Luqman Muhammad Akthar, Xin Lü, Ming Shi, Jing Zhao, Qinghua Jiang, Li Yu
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2020.542818

Distinct Roles of LFA-1 and ICAM-1 on ILC2s Control Lung Infiltration, Effector Functions, and Development of Airway Hyperreactivity
Cited by: 17
Author(s): Benjamin P. Hurrell, Emily Howard, Lauriane Galle-Treger, Doumet Georges Helou, Pedram Shafiei-Jahani, Jacob D. Painter, Omid Akbari
Software Mentions: 3
Published: almost 4 years ago

10.3389/fphar.2019.01054

Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment
Cited by: 14
Author(s): Jaimit Parikh, Paolo Di Achille, James Kozloski, Viatcheslav Gurev
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphys.2020.00735

An Overview of the Role of Calcium/Calmodulin-Dependent Protein Kinase in Cardiorenal Syndrome
Cited by: 29
Author(s): Carolina Victória Cruz Junho, Wellington Caio‐Silva, Mayra Trentin-Sonoda, Marcela Sorelli Carneiro‐Ramos
Software Mentions: 3
Published: about 4 years ago

10.3389/fphys.2019.00721

Comprehensive Uncertainty Quantification and Sensitivity Analysis for Cardiac Action Potential Models
Cited by: 54
Author(s): Pras Pathmanathan, Jonathan M. Cordeiro, Richard A. Gray
Software Mentions: 3
Published: about 5 years ago

10.3389/fpubh.2020.584721

Catastrophic Health Impacts of Spiraling Climate Change: How Certain Can We Be About Their Magnitudes?
Cited by: 1
Author(s): Zaid Chalabi, Anna M Foss
Software Mentions: 3
Published: almost 4 years ago

10.1534/g3.119.400868

Origin and Evolution of Two Independently Duplicated Genes Encoding UDP- Glucose: Glycoprotein Glucosyltransferases inCaenorhabditisand Vertebrates
Cited by: 6
Author(s): Diego A. Caraballo, Lucila I Buzzi, Carlos P. Modenutti, Ana Acosta-Montalvo, Olga Castro, María Susana Rossi
Software Mentions: 3
Published: over 4 years ago

10.1534/g3.120.401037

Draft Genome Assembly of Floccularia luteovirens, an Edible and Symbiotic Mushroom on Qinghai-Tibet Plateau
Cited by: 3
Author(s): Xiaolong Gan, Dong Cao, Zhenyu Zhang, Shu Cheng, Lin Wei, Shiming Li, Baolong Liu
Software Mentions: 3
Published: over 4 years ago

10.1534/g3.120.401126

ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in theCaenorhabditis elegansNervous System
Cited by: 6
Author(s): Elyse L Christensen, Alexandra Beasley, Jessica Radchuk, Zachery Mielko, Elicia Preston, Sidney Stuckett, John I. Murray, Martin L. Hudson
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-019-0697-8

Neoantigen-specific immunity in low mutation burden colorectal cancers of the consensus molecular subtype 4
Cited by: 37
Author(s): Jitske van den Bulk, Els M.E. Verdegaal, Dina Ruano, Marieke E. Ijsselsteijn, Marten Visser, Ruud van der Breggen, Thomas Duhen, Manon van der Ploeg, Natasja L. de Vries, Jan Oosting, Koen Peeters, Andrew D. Weinberg, Arantza Farina Sarasqueta, Sjoerd H. van der Burg, Noel F.C.C. de Miranda
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.gpb.2016.04.008

Identification of Risk Pathways and Functional Modules for Coronary Artery Disease Based on Genome-wide SNP Data
Cited by: 8
Author(s): Xiang Zhao, Yizhao Luan, Xiaoyu Zuo, Ye Da Chen, Jiheng Qin, Long-Fei Jin, Yiqing Tan, Mei-Hua Lin, Naizun Zhang, Yan Liang, Shaoqi Rao
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.gpb.2017.01.001

GSA: Genome Sequence Archive *
Cited by: 465
Author(s): Yanqing Wang, Fuhai Song, Junwei Zhu, Sisi Zhang, Yadong Yang, Tingting Chen, Bixia Tang, Lili Dong, Nan Ding, Qian Zhang, Zhouxian Bai, Xunong Dong, Huanxin Chen, Mingyuan Sun, Shuang Zhai, Yuan Sun, Lei Yu, Lan Li, Jingfa Xiao, Xiangdong Fang, Hongxing Lei, Zhang Zhang, Wenming Zhao
Software Mentions: 3
Published: over 7 years ago

10.1186/s40635-020-00361-9

Transcriptional profiling of leukocytes in critically ill COVID19 patients: implications for interferon response and coagulation
Cited by: 32
Author(s): Sean E. Gill, Claudia C. dos Santos, David B. O’Gorman, David E. Carter, Eric K. Patterson, Marat Slessarev, Claudio M. Martin, Mark Daley, Michael R. Miller, Gediminas Cepinskas, Douglas D. Fraser
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.ppat.1003920

Group B Streptococcal Infection of the Choriodecidua Induces Dysfunction of the Cytokeratin Network in Amniotic Epithelium: A Pathway to Membrane Weakening
Cited by: 44
Author(s): Jeroen Vanderhoeven, Craig J. Bierle, Raj P. Kapur, Ryan M. McAdams, Richard P. Beyer, Theo K. Bammler, Federico M. Farin, Aasthaa Bansal, Min Spencer, Mei Deng, Michael G. Gravett, Craig E. Rubens, Lakshmi Rajagopal, Kristina M. Adams Waldorf
Software Mentions: 3
Published: over 10 years ago

10.1038/srep02898

Soft truncation thresholding for gene set analysis of RNA-seq data: Application to a vaccine study
Cited by: 15
Author(s): Brooke L. Fridley, Gregory D. Jenkins, Diane E. Grill, Richard B. Kennedy, Gregory A. Poland, Ann L. Oberg
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep17822

Role of innate immunity-triggered pathways in the pathogenesis of Sickle Cell Disease: a meta-analysis of gene expression studies
Cited by: 33
Author(s): Bidossessi Wilfried Hounkpe, Maiara Marx Luz Fiusa, Marina Pereira Colella, Loredana Costa, Rafaela de Oliveira Benatti, Sara T Olalla Saad, Fernando Ferreira Costa, Magnun Nueldo Nunes Santos, Erich Vinícius De Paula
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-018-23829-x

Rule-based modelling provides an extendable framework for comparing candidate mechanisms underpinning clathrin polymerisation
Cited by: 2
Author(s): Anatoly Sorokin, Katharina Heil, J. Douglas Armstrong, Oksana Sorokina
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-56818-9

The diversity of recent trends for chondrichthyans in the Mediterranean reflects fishing exploitation and a potential evolutionary pressure towards early maturation
Cited by: 23
Author(s): Sergio Ramírez‐Amaro, Francesc Ordines, Antonio Esteban, Carlos Martín García, Beatríz Guijarro, F. Salmerón, Bàrbara Terrasa, Enric Massutı́
Software Mentions: 3
Published: over 4 years ago

10.3390/s18124330

Variational Pansharpening for Hyperspectral Imagery Constrained by Spectral Shape and Gram–Schmidt Transformation
Cited by: 10
Author(s): Z. J. Huang, Qihao Chen, Xiuguo Liu
Software Mentions: 3
Published: almost 6 years ago

10.3390/s20123423

Demosaicing of CFA 3.0 with Applications to Low Lighting Images
Cited by: 6
Author(s): Chiman Kwan, Jude Larkin, Bulent Ayhan
Software Mentions: 3
Published: over 4 years ago

10.3390/s20185440

A Modified Genetic Algorithm with Local Search Strategies and Multi-Crossover Operator for Job Shop Scheduling Problem
Cited by: 28
Author(s): Monique Simplicio Viana, Orides Morandin, Rodrigo Colnago Contreras
Software Mentions: 3
Published: almost 4 years ago

10.1039/c7tx00047b

Systems toxicology meta-analysis of in vitro assessment studies: biological impact of a candidate modified-risk tobacco product aerosol compared with cigarette smoke on human organotypic cultures of the aerodigestive tract
Cited by: 22
Author(s): Anita Iskandar, Bjoern Titz, Alain Sewer, Patrice Leroy, Thomas Schneider, Filippo Zanetti, Carole Mathis, Ashraf Elamin, Stefan Frentzel, Walter K. Schlage, Florian Martin, Nikolai V. Ivanov, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.17510

Differential expression of circulating biomarkers of tumor phenotype and outcomes in previously treated non-small cell lung cancer patients receiving erlotinib vs. cytotoxic chemotherapy
Cited by: 7
Author(s): Mary J. Fidler, Casey Frankenberger, Richard Seto, Gabriela C. Lobato, Cristina Fhied, Selina Sayidine, Sanjib Basu, Mark Pool, Reem Karmali, Marta Batus, Wen-Rong Lie, D. Neil Hayes, Jehangir Mistry, Philip Bonomi, Jeffrey A. Borgia
Software Mentions: 3
Published: over 7 years ago

10.1155/2015/954598

Statistical and Computational Methods for Genetic Diseases: An Overview
Cited by: 10
Author(s): Francesco Camastra, Maria Donata Di Taranto, Antonino Staiano
Software Mentions: 2
Published: over 9 years ago

10.1155/2015/184350

Hybrid RGSA and Support Vector Machine Framework for Three-Dimensional Magnetic Resonance Brain Tumor Classification
Cited by: 10
Author(s): Renu Sharma, P. Marikkannu
Software Mentions: 2
Published: over 9 years ago

10.1016/j.csbj.2020.02.014

A mathematical model to predict nanomedicine pharmacokinetics and tumor delivery
Cited by: 55
Author(s): Prashant Dogra, Joseph D. Butner, Javier Ruiz-Ramírez, Yao-Li Chuang, Achraf Noureddine, C. Jeffrey Brinker, Vittorio Cristini, Zhihui Wang
Software Mentions: 2
Published: over 4 years ago

10.2174/138920210791233117

Transcription Factor CHF1/Hey2 Regulates Specific Pathways in Serum Stimulated Primary Cardiac Myocytes: Implications for Cardiac Hypertrophy
Cited by: 10
Author(s): Man Yu, Xiang Fan, Richard P. Beyer, Federico M. Farin, Theo K. Bammler, Michael T. Chin
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pcbi.1001093

Natural Selection on Functional Modules, a Genome-Wide Analysis
Cited by: 13
Author(s): François Serra, Leonardo Arbiza, Joaquín Dopazo, Hernán Dopazo
Software Mentions: 2
Published: over 13 years ago

10.1002/ece3.1520

Evaluation of habitat suitability index models by global sensitivity and uncertainty analyses: a case study for submerged aquatic vegetation
Cited by: 18
Author(s): Zuzanna Zajac, Bradley M. Stith, Andrea Bowling, Catherine A. Langtimm, Eric D. Swain
Software Mentions: 2
Published: over 9 years ago

10.1155/2016/1086579

Optimal Siting and Sizing of Multiple DG Units for the Enhancement of Voltage Profile and Loss Minimization in Transmission Systems Using Nature Inspired Algorithms
Cited by: 25
Author(s): Ambika Ramamoorthy, Rajeswari Ramachandran
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1004062

Cyclin and DNA Distributed Cell Cycle Model for GS-NS0 Cells
Cited by: 17
Author(s): David Garcia Munzer, Margaritis Kostoglou, Michael C. Georgiadis, Efstratios N. Pistikopoulos, Athanasios Mantalaris
Software Mentions: 2
Published: over 9 years ago

10.3390/ph13100265

Cycle Network Model of Prostaglandin H Synthase-1
Cited by: 3
Author(s): Alexey Goltsov, Maciej Swat, Kirill Peskov, Yuri Kosinsky
Software Mentions: 2
Published: almost 4 years ago

10.3390/s16081043

A Wireless Sensor Network with Soft Computing Localization Techniques for Track Cycling Applications
Cited by: 44
Author(s): Sadik Kamel Gharghan, Rosdiadee Nordin, Mahamod Ismail
Software Mentions: 2
Published: about 8 years ago

10.3390/e22050547

Reference Evapotranspiration Modeling Using New Heuristic Methods
Cited by: 31
Author(s): Rana Muhammad Adnan, Zhihuan Chen, Xiao Yuan, Özgür Kisi, Ahmed El-Shafie, Alban Kuriqi, Rana Muhammad Adnan
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.15128

A novel integrative risk index of papillary thyroid cancer progression combining genomic alterations and clinical factors
Cited by: 17
Author(s): Qing Cheng, Xuechan Li, Chaitanya R. Acharya, Terry Hyslop, Julie Ann Sosa
Software Mentions: 2
Published: over 7 years ago

10.1002/mgg3.207

Behavioral and transcriptomic profiling of mice null for Lphn3, a gene implicated in <scp>ADHD</scp> and addiction
Cited by: 37
Author(s): Caitlin A. Orsini, Barry Setlow, Michael A. DeJesus, Stacy Galaviz, Kimberly Loesch, Thomas R. Ioerger, Deeann Wallis
Software Mentions: 2
Published: over 8 years ago

10.3390/s19081835

A PSO-Based Uneven Dynamic Clustering Multi-Hop Routing Protocol for Wireless Sensor Networks
Cited by: 26
Author(s): Danwei Ruan, Jianhua Huang
Software Mentions: 2
Published: over 5 years ago

10.3390/ma14092401

Life-Cycle Assessment of Alkali-Activated Materials Incorporating Industrial Byproducts
Cited by: 21
Author(s): Iman Faridmehr, Moncef L. Nehdi, Mehdi Nikoo, Ghasan Fahim Huseien, Togay Ozbakkaloglu
Software Mentions: 2
Published: over 3 years ago

10.3390/ma14154068

Prediction of Healing Performance of Autogenous Healing Concrete Using Machine Learning
Cited by: 16
Author(s): Xiang‐Zhong Huang, Mirna Wasouf, Jessada Sresakoolchai, Sakdirat Kaewunruen
Software Mentions: 2
Published: about 3 years ago

10.1208/s12248-021-00623-8

Quantitative Systems Pharmacology Modeling of Avadomide-Induced Neutropenia Enables Virtual Clinical Dose and Schedule Finding Studies
Cited by: 1
Author(s): R. Abbiati, Michael Pourdehnad, Soraya Carrancio, Daniel W. Pierce, Shailaja Kasibhatla, Mark McConnell, Matthew Trotter, Remco Loos, Cristina Costa Santini, Alexander V. Ratushny
Software Mentions: 2
Published: about 3 years ago

10.3390/s20133733

Sensor Node Activation Using Bat Algorithm for Connected Target Coverage in WSNs
Cited by: 11
Author(s): Jaemin Kim, Younghwan Yoo
Software Mentions: 2
Published: about 4 years ago

10.3389/fcimb.2021.645778

Targeted Transcriptomic Analysis of C57BL/6 and BALB/c Mice During Progressive Chronic Toxoplasma gondii Infection Reveals Changes in Host and Parasite Gene Expression Relating to Neuropathology and Resolution
Cited by: 15
Author(s): Kristina V. Bergersen, Ashli Barnes, Danielle Worth, Clément N. David, Emma H. Wilson
Software Mentions: 2
Published: over 3 years ago

10.3389/fncom.2020.00004

Regulation of CSF and Brain Tissue Sodium Levels by the Blood-CSF and Blood-Brain Barriers During Migraine
Cited by: 9
Author(s): H. O. Ghaffari, Samuel C. Grant, Linda R. Petzold, Michael G. Harrington
Software Mentions: 2
Published: over 4 years ago

10.1208/s12248-020-00499-0

Inter-compound and Intra-compound Global Sensitivity Analysis of a Physiological Model for Pulmonary Absorption of Inhaled Compounds
Cited by: 6
Author(s): Nicola Melillo, Silvia Grandoni, Nicola Semprini Cesari, Giandomenico Brogin, Paola Puccini, Paolo Magni
Software Mentions: 2
Published: about 4 years ago

10.3390/s21124086

Data Clustering Using Moth-Flame Optimization Algorithm
Cited by: 27
Author(s): Tribhuvan Singh, Nitin Kumar Saxena, Manju Khurana, Dilbag Singh, Mohamed Abdalla, Hammam Alshazly
Software Mentions: 2
Published: over 3 years ago

10.3390/ma13194402

A Methodology for the Statistical Calibration of Complex Constitutive Material Models: Application to Temperature-Dependent Elasto-Visco-Plastic Materials
Cited by: 6
Author(s): Juan Luis de Pablos, Edoardo Menga, Ignacio Romero
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-15-13

gsGator: an integrated web platform for cross-species gene set analysis
Cited by: 6
Author(s): Hyun‐Jung Kang, Ikjung Choi, Sooyoung Cho, Daeun Ryu, Sanghyuk Lee, Wankyu Kim
Software Mentions: 2
Published: over 10 years ago

10.3389/fimmu.2021.628156

Myeloid Arginase 1 Insufficiency Exacerbates Amyloid-β Associated Neurodegenerative Pathways and Glial Signatures in a Mouse Model of Alzheimer’s Disease: A Targeted Transcriptome Analysis
Cited by: 5
Author(s): Ma C, Jerry B. Hunt, Andrii Kovalenko, Huimin Liu, Maj‐Linda B. Selenica, Michael B. Orr, Bei Zhang, John C. Gensel, David J. Feola, Marcia N. Gordon, Dave Morgan, Paula C. Bickford, Daniel Lee
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2020.559342

Triggering Receptor Expressed on Myeloid Cell 2 R47H Exacerbates Immune Response in Alzheimer’s Disease Brain
Cited by: 18
Author(s): Olena Korvatska, Kostantin Kiianitsa, Alexander V. Ratushny, Mark Matsushita, Neal Beeman, Wei-Ming Chien, Jun‐ichi Satoh, Michael O. Dorschner, C. Dirk Keene, Theo K. Bammler, Thomas D. Bird, Wendy H. Raskind
Software Mentions: 2
Published: almost 4 years ago

10.3390/ma9070539

Formability Analysis of Bamboo Fabric Reinforced Poly (Lactic) Acid Composites
Cited by: 12
Author(s): Nurul Fazita Mohammad Rawi, Krishnan Jayaraman, Debes Bhattacharyya
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2020.00614

Rapid Low-Cost Microarray-Based Genotyping for Genetic Screening in Primary Immunodeficiency
Cited by: 17
Author(s): Narissara Suratannon, Rogier T. A. van Wijck, Linda Broer, Laixi Xue, Joyce B. J. van Meurs, Barbara H. Barendregt, Mirjam van der Burg, Willem A. Dik, Pantipa Chatchatee, Anton W. Langerak, Sigrid Swagemakers, Jacqueline A.C. Goos, Irene M J Mathijssen, Virgil A. S. H. Dalm, Kanya Suphapeetiporn, Kim C. Heezen, Jose Drabwell, André G. Uitterlinden, Peter J. van der Spek, P. Martin van Hagen
Software Mentions: 2
Published: over 4 years ago

10.1007/s00262-021-02901-y

Natural killer cells efficiently target multiple myeloma clonogenic tumor cells
Cited by: 6
Author(s): Alejandra Leivas, Ruth M. Risueño, Alma Guzmán, Laura Sánchez-Vega, Manuel Everardo Mondragon Perez, Diego Megı́as, Lucía Fernández, Rafael Alonso, Manuel Pérez‐Martínez, Inmaculada Rapado, Joaquín Martínez‐López
Software Mentions: 2
Published: over 3 years ago

10.1186/bcr3668

An integrated genomic approach identifies persistent tumor suppressive effects of transforming growth factor-β in human breast cancer
Cited by: 19
Author(s): Misako Sato, Mitsutaka Kadota, Binwu Tang, Howard H. Yang, Yuan Yang, Mengge Shan, Jia Weng, Michael A. Welsh, Kathleen C. Flanders, Yukiko Nagano, Aleksandra M. Michalowski, Robert Clifford, Maxwell P. Lee, Lalage M. Wakefield
Software Mentions: 2
Published: over 10 years ago

10.1038/bcj.2016.126

IFN-β induces greater antiproliferative and proapoptotic effects and increased p53 signaling compared with IFN-α in PBMCs of Adult T-cell Leukemia/Lymphoma patients
Cited by: 18
Author(s): Tim Dierckx, Ricardo Khouri, Soraya Maria Menezes, Daniele Decanine, Lourdes Farre, Achiléa Candida Lisboa Bittencourt, Anne‐Mieke Vandamme, Johan Van Weyenbergh
Software Mentions: 2
Published: over 7 years ago

10.1155/2015/630472

Effect of Atlas Vertebrae Realignment in Subjects with Migraine: An Observational Pilot Study
Cited by: 2
Author(s): H. Charles Woodfield, D. Gordon Hasick, Werner J. Becker, Michael Rose, James N. Scott
Software Mentions: 2
Published: over 9 years ago

10.1186/1752-0509-5-S2-S11

SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment
Cited by: 2
Author(s): Jae‐Hoon Lee, Soyeon Ahn, Sohee Oh, Bruce S. Weir, Taesung Park
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12918-015-0216-5

Conditional robustness analysis for fragility discovery and target identification in biochemical networks and in cancer systems biology
Cited by: 11
Author(s): Fortunato Bianconi, Elisa Baldelli, Vienna Luovini, Emanuel F. Petricoin, Lucio Crinò, Paolo Valigi
Software Mentions: 2
Published: almost 9 years ago

Projects: cran: GSA

Papers Mentioning GSA 285