Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: GOplot

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/GOplot

Visualization of Functional Analysis Data
3 versions
Latest release: over 8 years ago
1 dependent package
1,625 downloads last month

Papers Mentioning GOplot 269

10.3389/fgene.2021.702102
Construction and Validation of an Immune-Based Prognostic Model for Pancreatic Adenocarcinoma Based on Public Databases
Cited by: 3
Author(s): Miaobin Mao, Hong-Jian Ling, Yu‐Ping Lin, Yanling Chen, Benhua Xu, Rong Zheng
Software Mentions: 5
Published: over 3 years ago
10.3389/fimmu.2019.02474
Multi-Parameter Analysis of Biobanked Human Bone Marrow Stromal Cells Shows Little Influence for Donor Age and Mild Comorbidities on Phenotypic and Functional Properties
Cited by: 55
Author(s): Anastazja Andrzejewska, Rusan Catar, Janosch Schoon, Taimoor H. Qazi, F. Andrea Sass, Dorit Jacobi, Antje Blankenstein, Simon Reinke, D. H. Krüger, Mathias Streitz, Stephan Schlickeiser, Sarina Richter, Naima Souidi, Christien Madlen Beez, Julian Kamhieh-Milz, Ulrike Krüger, Tomasz Żemojtel, Karsten Jürchott, Dirk Strunk, Petra Reinke, Georg N. Duda, Guido Moll, Sven Geißler
Software Mentions: 5
Published: about 5 years ago
10.3389/fimmu.2018.02055
Molecular and Cellular Response to Experimental Anisakis pegreffii (Nematoda, Anisakidae) Third-Stage Larval Infection in Rats
Cited by: 19
Author(s): Ivana Bušelić, Željka Trumbić, Jerko Hrabar, Anamarija Vrbatović, Ivana Bočina, Ivona Mladineo
Software Mentions: 5
Published: about 6 years ago
10.3389/fimmu.2019.01716
Enhanced Immunomodulation in Inflammatory Environments Favors Human Cardiac Mesenchymal Stromal-Like Cells for Allogeneic Cell Therapies
Cited by: 3
Author(s): Falk Diedrichs, Meaghan Stolk, Karsten Jürchott, Marion Haag, Michael Sittinger, Martina Seifert
Software Mentions: 5
Published: over 5 years ago
10.3389/fnins.2018.00136
Neurogenomic Profiling Reveals Distinct Gene Expression Profiles Between Brain Parts That Are Consistent in Ophthalmotilapia Cichlids
Cited by: 4
Author(s): Sofie Derycke, Loïc Kéver, Koen Herten, Koen Van Den Berge, Maarten Van Steenberge, Jeroen Van Houdt, Lieven Clement, Pascal Poncin, Éric Parmentier, Erik Verheyen
Software Mentions: 5
Published: over 6 years ago
10.3389/fonc.2021.637733
Low Expression of ADCY4 Predicts Worse Survival of Lung Squamous Cell Carcinoma Based on Integrated Analysis and Immunohistochemical Verification
Cited by: 3
Author(s): Zhicong Liu, Lixin Ru, Zhenchao Ma
Software Mentions: 5
Published: over 3 years ago
10.3389/fonc.2021.592107
Identification of Expression Patterns and Potential Prognostic Significance of m5C-Related Regulators in Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Zhaolong Han, Biao Yang, Yu Wang, Xiuxia Zeng, Zhen Tian
Software Mentions: 5
Published: over 3 years ago
10.7150/jca.49409
Identification of marker genes and cell subtypes in castration-resistant prostate cancer cells
Cited by: 6
Author(s): Xiaodan Lin, Nanping Lin, Tingting Lin, Yupeng Wu, Peng Huang, Zhi‐Bin Ke, Yunzhi Lin, Shao‐Hao Chen, Qing‐Shui Zheng, Yong Wei, Xue-Yi Xue, Rongjin Lin, Ning Xu
Software Mentions: 5
Published: almost 4 years ago
10.1155/2020/7503605
Integrated Analyses Identify Immune-Related Signature Associated with Qingyihuaji Formula for Treatment of Pancreatic Ductal Adenocarcinoma Using Network Pharmacology and Weighted Gene Co-Expression Network
Cited by: 9
Author(s): Xiang Qian, Zhuo Chen, Sha Sha Chen, Lu Ming Liu, Ai Qin Zhang
Software Mentions: 5
Published: over 4 years ago
10.1155/2021/8810849
Development of an Autophagy-Related Gene Prognostic Model and Nomogram for Estimating Renal Clear Cell Carcinoma Survival
Cited by: 7
Author(s): Ying Wang, Yinhui Yao, Jingyi Zhao, Chunhua Cai, Junhui Hu, Yan‐Wu Zhao
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12967-020-02323-x
Development of an autophagy-related gene expression signature for prognosis prediction in prostate cancer patients
Cited by: 63
Author(s): Daixing Hu, Li Jiang, Shengjun Luo, Xin Zhao, Hao Hu, Guozhi Zhao, Wei Tang
Software Mentions: 5
Published: over 4 years ago
10.3389/fnins.2016.00390
Bidirectional Expression of Metabolic, Structural, and Immune Pathways in Early Myopia and Hyperopia
Cited by: 31
Author(s): Nina Riddell, Loretta Giummarra, Nathan E. Hall, Sheila G. Crewther
Software Mentions: 4
Published: about 8 years ago
10.1155/2021/6628391
Identification of Prognostic Risk Model Based on DNA Methylation-Driven Genes in Esophageal Adenocarcinoma
Cited by: 2
Author(s): Yuhua Chen, Jinjie Wang, Hao Zhou, Zhanghao Huang, Qian Li, Wei Shi
Software Mentions: 4
Published: over 3 years ago
10.3390/life11080835
Identification of Autophagy- and Ferroptosis-Related lncRNAs Functioned through Immune-Related Pathways in Head and Neck Squamous Carcinoma
Cited by: 9
Author(s): Qi Guo, Xuehan Zhang, Tao Shen, Xiangting Wang
Software Mentions: 4
Published: over 3 years ago
10.7717/peerj.11561
The m<sup>6</sup>A-related gene signature for predicting the prognosis of breast cancer
Cited by: 7
Author(s): Shanliang Zhong, Lin Zhenzhong, Huanwen Chen, Ling Mao, Jifeng Feng, Siying Zhou
Software Mentions: 4
Published: over 3 years ago
10.1155/2020/8962090
Identification of Differentially Expressed lncRNAs and mRNAs in Children with Acquired Aplastic Anemia by RNA Sequencing
Cited by: 1
Author(s): Shaoying Lu, Xiaoxiao Song, Jing Chen, Xuguang Qiao
Software Mentions: 4
Published: over 4 years ago
10.1186/s12967-020-02327-7
Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis
Cited by: 15
Author(s): Yang Liu, Ting‐Yu Chen, Zhi-Yan Yang, Wei Bin Fang, Qian Wu, Zhang Chao
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2020.584604
Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage
Cited by: 16
Author(s): Yeliz Demırcı, Gokhan Cucun, Yusuf Kaan Poyraz, Suhaib Mohammed, Guillaume Heger, Irene Papatheodorou, Günes Özhan
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2020.00294
Methylation-Driven Genes Identified as Novel Prognostic Indicators for Thyroid Carcinoma
Cited by: 12
Author(s): Liting Lv, Liyu Cao, Guoqing Hu, Qinyan Shen, Jiaming Wu
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2019.00712
Prognostic lncRNAs, miRNAs, and mRNAs Form a Competing Endogenous RNA Network in Colon Cancer
Cited by: 33
Author(s): Qianrong Huang, Xin-Bin Pan
Software Mentions: 4
Published: over 5 years ago
10.1002/cam4.3275
A prognostic model composed of four long noncoding RNAs predicts the overall survival of Asian patients with hepatocellular carcinoma
Cited by: 8
Author(s): Xuefeng Gu, Hongbo Li, Ling Sha, Wei Zhao
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2020.529386
Integrative Analysis of DNA Methylation and Gene Expression to Determine Specific Diagnostic Biomarkers and Prognostic Biomarkers of Breast Cancer
Cited by: 17
Author(s): Ming Zhang, Yilin Wang, Yan Wang, Longyang Jiang, Xueping Li, Hua Gao, Minjie Wei, Lin Zhao
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.202452
Evaluation of the prognostic values of solute carrier (SLC) family 39 genes for patients with lung adenocarcinoma
Cited by: 8
Author(s): Haoming Zhou, Yingbo Zhu, Huizhong Qi, Liang Liang, Hao Wu, Jingping Yuan, Qingyong Hu
Software Mentions: 4
Published: almost 4 years ago
10.1002/cam4.3654
Establishment of a prognostic model of four genes in gastric cancer based on multiple data sets
Cited by: 11
Author(s): Liqun Zhou, Shi H Li, You Wu, Lin Xin
Software Mentions: 4
Published: over 3 years ago
10.18632/aging.203352
Development and validation of prognostic model based on the analysis of autophagy-related genes in colon cancer
Cited by: 8
Author(s): Yongfeng Wang, Kaili Lin, Tianchun Xu, Liuli Wang, Liangyin Fu, Guangming Zhang, Jing Ai, Yajun Jiao, Rongrong Zhu, Xiaoyong Han, Hui Cai
Software Mentions: 4
Published: over 3 years ago
10.3390/ijms19041111
Transcriptome Profile in Unilateral Adrenalectomy-Induced Compensatory Adrenal Growth in the Rat
Cited by: 11
Author(s): Karol Jopek, Marianna Tyczewska, Piotr Celichowski, Ludwik K. Malendowicz, Marcin Ruciński
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.ppat.1009107
Mycolactone toxin induces an inflammatory response by targeting the IL-1β pathway: Mechanistic insight into Buruli ulcer pathophysiology
Cited by: 23
Author(s): Mélanie Foulon, Marie Robbe-Saule, Jérémy Manry, Lucille Esnault, Yan Boucaud, Alexandre Alcaïs, Marine Malloci, Martine Fanton d’Andon, Tiffany Beauvais, Nathalie Labarrière, Pascale Jeannin, Laurent Abel, Jean‐Paul Saint‐André, Anne Croué, Yves Delneste, Ivo Gomperts Boneca, Laurent Marsollier, Estelle Marion
Software Mentions: 4
Published: almost 4 years ago
10.3389/fgene.2020.00989
Identification of the Prognostic Value of Immune-Related Genes in Esophageal Cancer
Cited by: 16
Author(s): Xiong Guo, Yujun Wang, Han Zhang, Chuan Qin, Anqi Cheng, Jianjun Li, Xinglong Dai, Ziwei Wang
Software Mentions: 4
Published: over 4 years ago
10.1007/s12079-020-00575-2
Spermatozoa induce transcriptomic alterations in bovine oviductal epithelial cells prior to initial contact
Cited by: 7
Author(s): Qurat Ul Ain Reshi, Janeli Viil, James Ord, Freddy Lättekivi, Kasun Godakumara, Mohammad Mehedi Hasan, Monika Nõmm, Kersti Jääger, Agne Velthut-Meikas, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 4
Published: about 4 years ago
10.1111/jcmm.15569
LIX1 regulates YAP activity and controls gastrointestinal cancer cell plasticity
Cited by: 8
Author(s): Amandine Guérin, Delphine Martire, Eva Trenquier, Tom Lesluyes, Sébastien Sagnol, Marine Pratlong, Elise Lefebvre, Frédéric Chibon, Pascal de Santa Barbara, Sandrine Faure
Software Mentions: 4
Published: over 4 years ago
10.1186/s13075-020-02195-y
Increased serum calpain activity is associated with HMGB1 levels in systemic sclerosis
Cited by: 9
Author(s): Ji-Na Zheng, Yang Li, Yue-Mei Yan, Yong Yu, Wenqi Shao, Qiang Wang
Software Mentions: 4
Published: over 4 years ago
10.1111/jcmm.15650
Combined analysis of RNA‐sequence and microarray data reveals effective metabolism‐based prognostic signature for neuroblastoma
Cited by: 4
Author(s): Xinyao Meng, Chenzhao Feng, Erhu Fang, Jiexiong Feng, Xiang Zhao
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2021.688882
MiR-1236-3p Inhibits the Proliferation, Invasion, and Migration of Colon Cancer Cells and Hinders Epithelial-Mesenchymal Transition by Targeting DCLK3
Cited by: 9
Author(s): Yang Zhao, Hongyi Zhou, Jie Shen, Shaohui Yang, Ke Deng, Qi Li, Wei Cui
Software Mentions: 4
Published: about 3 years ago
10.1186/s12920-021-00954-7
Identification of genes and pathways involved in malignant pleural mesothelioma using bioinformatics methods
Cited by: 3
Author(s): Xingsheng Liu, Kun Qian, Gaojun Lu, Peng Chen, Yi Zhang
Software Mentions: 4
Published: over 3 years ago
10.1038/s41420-021-00462-8
NR5A2 transcriptional activation by BRD4 promotes pancreatic cancer progression by upregulating GDF15
Cited by: 10
Author(s): Feng Guo, Yingke Zhou, Hui Guo, Dianyun Ren, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 3 years ago
10.18632/aging.202943
Identification of key pathways and genes in carotid atherosclerosis through bioinformatics analysis of RNA-seq data
Cited by: 2
Author(s): Zhongchen Li, Jiheng Hao, Kun Chen, Qunlong Jiang, Peijian Wang, Xiaohui Xing, Jiyue Wang, Yinjiang Zhang, Yi Xiao, Liyong Zhang
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2021.687629
A Non-Coding RNA Network Involved in KSHV Tumorigenesis
Cited by: 4
Author(s): Julián Naipauer, Martín E García Solá, Daria Salyakina, Santas Rosario, Siôn L. Williams, Omar A. Coso, Martı́n C. Abba, Enrique A. Mesri, Ezequiel Lacunza
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0252452
Comprehensive analysis of lncRNA biomarkers in kidney renal clear cell carcinoma by lncRNA-mediated ceRNA network
Cited by: 4
Author(s): Ke Gong, Ting Xie, Yiliao Luo, Hui Guo, Jinlan Chen, Zhiping Tan, Yifeng Yang, Li Xie
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pgen.1008189
Host-dependent nitrogen recycling as a mechanism of symbiont control in Aiptasia
Cited by: 66
Author(s): Guoxin Cui, Yi Jin Liew, Yong Li, Najeh M. Kharbatia, Noura Ibrahim Omar Zahran, Abdul‐Hamid Emwas, Vı́ctor M. Eguı́luz, Manuel Aranda
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-016-2952-3
Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response
Cited by: 46
Author(s): Marcos Paolinelli, José Manuel Villalobos-Escobedo, Philippe E. Rolshausen, Alfredo Herrera-Estrella, Clara E. Galindo-Sánchez, José Fabricio López-Hernández, Rufina Hernández-Martínez
Software Mentions: 4
Published: over 8 years ago
10.1155/2020/7397132
Prognostic Correlation of an Autophagy-Related Gene Signature in Patients with Head and Neck Squamous Cell Carcinoma
Cited by: 17
Author(s): Cai Yang, Hongxiang Mei, Liang Peng, Fulin Jiang, Bingjie Xie, Juan Li
Software Mentions: 4
Published: almost 4 years ago
10.1534/g3.117.300245
Genome-Wide Screen for<i>Saccharomyces cerevisiae</i>Genes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host
Cited by: 7
Author(s): Sujal Phadke, Calum J. Maclean, Serena Zhao, Emmi A. Mueller, Lucas A. Michelotti, Kaitlyn L. Norman, Anuj Kumar, Timothy Y. James
Software Mentions: 4
Published: almost 7 years ago
10.1093/g3journal/jkab072
Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar)
Cited by: 2
Author(s): Marianne Iversen, Teshome Dagne Mulugeta, Alexander C. West, Even H. Jørgensen, Samuel Martín, Simen Rød Sandve, David G. Hazlerigg
Software Mentions: 4
Published: over 3 years ago
10.3390/genes9120574
A Two-Cohort RNA-seq Study Reveals Changes in Endometrial and Blood miRNome in Fertile and Infertile Women
Cited by: 25
Author(s): Kadri Rekker, Signe Altmäe, Marina Suhorutshenko, Maire Peters, Juan F. Martínez-Blanch, Francisco M. Codoñer, Felipe Vilella, Carlos Simón, Andres Salumets, Agne Velthut-Meikas
Software Mentions: 4
Published: about 6 years ago
10.3389/fmolb.2021.653805
High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: over 3 years ago
10.3389/fmolb.2021.687576
A Comprehensive Analysis of the Downregulation of miRNA-1827 and Its Prognostic Significance by Targeting SPTBN2 and BCL2L1 in Ovarian Cancer
Cited by: 7
Author(s): Penghui Feng, Zhitong Ge, Zaixin Guo, Lin Lin, Qi Yu
Software Mentions: 4
Published: over 3 years ago
10.3390/genes10090725
A Transcriptome Analysis Identifies Biological Pathways and Candidate Genes for Feed Efficiency in DLY Pigs
Cited by: 9
Author(s): Xingwang Wang, Shaoyun Li, Jie Wu, Rongrong Ding, Jianping Quan, Enqin Zheng, Jie Yang, Zhenfang Wu
Software Mentions: 4
Published: about 5 years ago
10.3390/genes11070815
Cortical Granule Distribution and Expression Pattern of Genes Regulating Cellular Component Size, Morphogenesis, and Potential to Differentiation are Related to Oocyte Developmental Competence and Maturational Capacity In Vivo and In Vitro
Cited by: 10
Author(s): Magdalena Kulus, Wiesława Kranc, Michal Ješeta, Patrycja Sujka‐Kordowska, Aneta Konwerska, Sylwia Ciesiółka, Piotr Celichowski, Lisa Moncrieff, Ievgeniia Kocherova, Małgorzata Józkowiak, Jakub Kulus, Maria Wieczorkiewicz, Hanna Piotrowska‐Kempisty, Mariusz T. Skowroński, Dorota Bukowska, Marie Machatková, Šárka Hanuláková, Paul Mozdziak, J. M. Jaśkowski, Bartosz Kempisty, Paweł Antosik
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2021.633059
Prediction of a Competing Endogenous RNA Co-expression Network by Comprehensive Methods in Systemic Sclerosis-Related Interstitial Lung Disease
Cited by: 2
Author(s): Yue-Mei Yan, Ji-Na Zheng, Liwei Wu, Qianwen Rao, Qiaorong Yang, Di Gao, Qiang Wang
Software Mentions: 4
Published: over 3 years ago
10.7150/ijms.49053
Comprehensive analysis of TPX2-related ceRNA network as prognostic biomarkers in lung adenocarcinoma
Cited by: 6
Author(s): Huo Chen, Meng-Yu Zhang, Rui Li, Xi-Jia Zhou, Liu T, Jianping Li, Xiao Liu, Yi-Qing Qu
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-021-92932-3
Dietary phosphorus and calcium in feed affects miRNA profiles and their mRNA targets in jejunum of two strains of laying hens
Cited by: 6
Author(s): Muhammad Arsalan Iqbal, Asghar Ali, Frieder Hadlich, Michael Oster, Henry Reyer, Nares Trakooljul, Vera Sommerfeld, M. Rodehutscord, Klaus Wimmers, Siriluck Ponsuksili
Software Mentions: 4
Published: over 3 years ago
10.3390/biom9120788
The Impact of Integrin-Mediated Matrix Adhesion on Cisplatin Resistance of W1 Ovarian Cancer Cells
Cited by: 20
Author(s): Kathleen Wantoch von Rekowski, Philipp König, Svenja Henze, Martin Schlesinger, Piotr Zawierucha, Radosław Januchowski, Gerd Bendas
Software Mentions: 4
Published: almost 5 years ago
10.1155/2020/4535820
A Novel Four-Gene Prognostic Signature as a Risk Biomarker in Cervical Cancer
Cited by: 6
Author(s): Jun Wang, Hua Zheng, Yatian Han, Geng Wang, Yanbin Li
Software Mentions: 4
Published: almost 4 years ago
10.3389/fnmol.2018.00375
L-Lactate Regulates the Expression of Synaptic Plasticity and Neuroprotection Genes in Cortical Neurons: A Transcriptome Analysis
Cited by: 57
Author(s): Michael B. Margineanu, Hanan Mahmood, Hubert Fiumelli, Pierre J. Magistretti
Software Mentions: 4
Published: about 6 years ago
10.3390/ijms21020440
Anisotropic Platinum Nanoparticle-Induced Cytotoxicity, Apoptosis, Inflammatory Response, and Transcriptomic and Molecular Pathways in Human Acute Monocytic Leukemia Cells
Cited by: 24
Author(s): Sangiliyandi Gurunathan, M. Jeyaraj, Hyeonwoo La, Hyunjin Yoo, Youngsok Choi, Jeong Tae, Chankyu Park, Jin‐Hoi Kim, Kwonho Hong
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-020-70353-y
Single-cell RNA sequencing uncovers heterogenous transcriptional signatures in macrophages during efferocytosis
Cited by: 43
Author(s): Connor Lantz, Behram Radmanesh, Esther Liu, Edward B. Thorp, Jennie Lin
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2020.00934
Integrated Analysis of a Risk Score System Predicting Prognosis and a ceRNA Network for Differentially Expressed lncRNAs in Multiple Myeloma
Cited by: 8
Author(s): Sijie Zhou, Jiuyuan Fang, Yan Sun, Huixiang Li
Software Mentions: 4
Published: about 4 years ago
10.1128/mBio.03602-20
A PAS Protein Directs Metabolic Reprogramming during Cryptococcal Adaptation to Hypoxia
Cited by: 7
Author(s): Youbao Zhao, Xiaorong Lin
Software Mentions: 3
Published: over 3 years ago
10.7150/jca.53760
Prognostic Role of the Ubiquitin Proteasome System in Clear Cell Renal Cell Carcinoma: A Bioinformatic Perspective
Cited by: 5
Author(s): Hongda Guo, Yan Li, Yaxiao Liu, Lipeng Chen, Zhengdong Gao, Lekai Zhang, Nan Zhou, Hu Guo, Benkang Shi
Software Mentions: 3
Published: almost 4 years ago
10.7150/jca.54565
Systematic Analysis of 4-gene Prognostic Signature in Patients with Diffuse Gliomas Based on Gene Expression Profiles
Cited by: 1
Author(s): Chunhai Huang, Zujian Xiong, Qi Yang, Xuejun Li
Software Mentions: 3
Published: almost 4 years ago
10.1111/jcmm.14598
Establishment and characterization of induced pluripotent stem cells (iPSCs) from central nervous system lupus erythematosus
Cited by: 10
Author(s): Maria Teresa De Angelis, Gianluca Santamaria, Elvira Immacolata Parrotta, Stefania Scalise, Michela Lo Conte, Sara Gasparini, Edoardo Ferlazzo, Umberto Aguglia, Clara Ciampi, Antonella Sgura, Giovanni Cuda
Software Mentions: 3
Published: about 5 years ago
10.1038/s41426-018-0187-x
Filamentation in <i>Candida auris</i>, an emerging fungal pathogen of humans: passage through the mammalian body induces a heritable phenotypic switch
Cited by: 93
Author(s): Huizhen Yue, Bing Jian, Qiushi Zheng, Yulong Zhang, Tianren Hu, Han Du, Hui Wang, Guanghua Huang
Software Mentions: 3
Published: almost 6 years ago
10.1111/jcmm.15957
Prediction of a competing endogenous RNA co‐expression network as a prognostic marker in glioblastoma
Cited by: 13
Author(s): Qing Peng, Runmin Li, Ying Liu, Xianghong Xu, Wensi Ni, Huiran Lin, Ning Liang
Software Mentions: 3
Published: about 4 years ago
10.7717/peerj.11627
Development and validation of ferroptosis-related lncRNAs signature for hepatocellular carcinoma
Cited by: 20
Author(s): Jingang Liang, Yaofeng Zhi, Wenhui Deng, Weige Zhou, Xuejun Li, Zheyou Cai, Zengtai Zhu, Jinxiang Zeng, Wanlan Wu, Ying Dong, Jin Huang, Yuzhuo Zhang, Shichao Xu, Yixin Feng, Fuping Ding, Zhang Jin
Software Mentions: 3
Published: over 3 years ago
10.18632/aging.103437
Subtype-specific risk models for accurately predicting the prognosis of breast cancer using differentially expressed autophagy-related genes
Cited by: 5
Author(s): Baoai Han, He Zhang, Yuying Zhu, Xingxing Han, Zhiyong Wang, Zicong Gao, Yue Yuan, Ruinan Tian, Fei Zhang, Ruifang Niu
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-018-19627-0
In vitro RNA-seq-based toxicogenomics assessment shows reduced biological effect of tobacco heating products when compared to cigarette smoke
Cited by: 31
Author(s): Linsey E. Haswell, Sarah Corke, Ivan Verrastro, Andrew Baxter, Anisha Banerjee, Jason Adamson, Tomasz Jaunky, Christopher Proctor, Marianna Gaça, Emmanuel Minet
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-020-77623-9
UBC9 coordinates inflammation affecting development of bladder cancer
Cited by: 15
Author(s): Xiaoliang Huang, Yuting Tao, Jiamin Gao, Xiaoting Zhou, Shaomei Tang, Caiwang Deng, Zhiyong Lai, Xinggu Lin, Qiuyan Wang, Tianyu Li
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-65947-5
De novo RNA sequencing analysis of Aeluropus littoralis halophyte plant under salinity stress
Cited by: 13
Author(s): Elham Younesi-Melerdi, Ghorbanali Nematzadeh, Ali Pakdin Parizi, Mohammad Reza Bakhtiarizadeh, Seyed Abolfazl Motahari
Software Mentions: 3
Published: over 4 years ago
10.18632/aging.104089
Identification and characterization of dynamically regulated hepatitis-related genes in a concanavalin A-induced liver injury model
Cited by: 1
Author(s): Anna Chen, Yidong Wang, Jiaqi Wu, Dongfang Tang, Qianru Zhu, Anqian Lu, Jin Yang, Zhejun Cai, Junping Shi
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-020-71040-8
Human transcription factor and protein kinase gene fusions in human cancer
Cited by: 7
Author(s): Kari Salokas, Rigbe Weldatsadik, Markku Varjosalo
Software Mentions: 3
Published: about 4 years ago
10.18632/aging.102365
Association of a novel seven-gene expression signature with the disease prognosis in colon cancer patients
Cited by: 21
Author(s): Haojie Yang, Lun Hua, Hong-Cheng Lin, Dan Gan, Wei Jin, Can Cui, Yixin Yan, Yiming Qian, Changpeng Han, Zhenyi Wang
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2020.00734
Analysis of Differentially Expressed Genes and Molecular Pathways in Familial Hypercholesterolemia Involved in Atherosclerosis: A Systematic and Bioinformatics Approach
Cited by: 75
Author(s): Sanjit Kumar, Dhirendra Kumar, R. Bithia, Srivarshini Sankar, R. Magesh, Mariem Sidenna, George Priya Doss C, Hatem Zayed
Software Mentions: 3
Published: over 4 years ago
10.18632/oncotarget.16688
Chromatin state dynamics during NK cell activation
Cited by: 17
Author(s): Yang Li, Jin Wang, Jie Yin, Xinhua Liu, Minghang Yu, Ting Li, Yanping Han, Xi Wang
Software Mentions: 3
Published: over 7 years ago
10.1186/s13578-019-0356-1
Transcriptome analysis reveals an important candidate gene involved in both nodal metastasis and prognosis in lung adenocarcinoma
Cited by: 42
Author(s): Xiao Zhu, Hui Luo, Ying Xu
Software Mentions: 3
Published: about 5 years ago
10.18632/oncotarget.22659
Clinical role and biological function of CDK5 in hepatocellular carcinoma: A study based on immunohistochemistry, RNA-seq and<i>in vitro</i>investigation
Cited by: 13
Author(s): Rui Zhang, Peng Lin, Hong Yang, Yun He, Yi‐Wu Dang, Zhaoyong Feng, Gang Chen
Software Mentions: 3
Published: almost 7 years ago
10.18632/oncotarget.24089
An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: almost 7 years ago
10.1186/s13018-020-02180-w
A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning
Cited by: 10
Author(s): Jianyong Liu, Ningjie Chen
Software Mentions: 3
Published: almost 4 years ago
10.1002/brb3.1879
Identifying functionally relevant candidate genes for inflexible ethanol intake in mice and humans using a guilt‐by‐association approach
Cited by: 8
Author(s): Luana Martins de Carvalho, Pablo Augusto de Souza Fonseca, Isadora Marques Paiva, Samara Damasceno, Agatha Sondertoft Braga Pedersen, Daniel Almeida da Silva e Silva, Corinde E. Wiers, Nora D. Volkow, Ana Lúcia Brunialti Godard
Software Mentions: 3
Published: about 4 years ago
10.1042/BSR20194464
Identification of sulforaphane regulatory network in hepatocytes by microarray data analysis based on GEO database
Cited by: 2
Author(s): Lei Gao, Jinshen Wang, Yuhua Zhao, Junhua Liu, Da Cai, Xiao Zhang, Yutao Wang, Shuqiu Zhang
Software Mentions: 3
Published: almost 4 years ago
10.3390/biom9090429
The Role of Circular RNA CDR1as/ciRS-7 in Regulating Tumor Microenvironment: A Pan-Cancer Analysis
Cited by: 81
Author(s): Zou, Zihao Zheng, Deng Deng, Kan Yang, Weibo Xie, Tang Tang, Weibo Xie
Software Mentions: 3
Published: about 5 years ago
10.1186/s13018-020-01965-3
Identification of potential specific biomarkers and key signaling pathways between osteogenic and adipogenic differentiation of hBMSCs for osteoporosis therapy
Cited by: 9
Author(s): Jianjun Wu, Peian Cai, Zhenhui Lu, Zhang Zhi, Xixi He, Bikang Zhu, Li Zheng, Jinmin Zhao
Software Mentions: 3
Published: about 4 years ago
10.3389/fonc.2019.01038
m6A RNA Methylation Regulators Contribute to Malignant Progression and Have Clinical Prognostic Impact in Gastric Cancer
Cited by: 68
Author(s): Yue Su, Jinqi Huang, Jichang Hu
Software Mentions: 3
Published: about 5 years ago
10.3390/ijms20010084
The Unique Mechanisms of Cellular Proliferation, Migration and Apoptosis are Regulated through Oocyte Maturational Development—A Complete Transcriptomic and Histochemical Study
Cited by: 20
Author(s): Błażej Chermuła, Maciej Brązert, Michal Ješeta, Katarzyna Ożegowska, Patrycja Sujka‐Kordowska, Aneta Konwerska, Artur Bryja, Wiesława Kranc, Maurycy Jankowski, Mariusz J. Nawrocki, Ievgeniia Kocherova, Piotr Celichowski, Blanka Borowiec, Małgorzata Popis, Joanna Budna‐Tukan, Paweł Antosik, Dorota Bukowska, Klaus‐Peter Brüssow, Leszek Pawełczyk, M Bruska, Maciej Zabel, Michał Nowicki, Bartosz Kempisty
Software Mentions: 3
Published: almost 6 years ago
10.1155/2020/2071593
High Expression of UBB, RAC1, and ITGB1 Predicts Worse Prognosis among Nonsmoking Patients with Lung Adenocarcinoma through Bioinformatics Analysis
Cited by: 11
Author(s): Huan Deng, Yo-Ping Huang, Li Wang, Ming Chen
Software Mentions: 3
Published: about 4 years ago
10.3390/ijms21072268
Thymosin β4 Identified by Transcriptomic Analysis from HF Anagen to Telogen Promotes Proliferation of SHF-DPCs in Albas Cashmere Goat
Cited by: 3
Author(s): Bai Dai, Hao Fei, Teng Xu, Bing Zhu, Li-qing Ren, Xiaoyu Han, Dongjun Liu
Software Mentions: 3
Published: over 4 years ago
10.3390/v13091834
The MAPK/ERK Pathway and the Role of DUSP1 in JCPyV Infection of Primary Astrocytes
Cited by: 4
Author(s): Michael Wilczek, Francesca J. Armstrong, Remi P. Geohegan, Colleen L. Mayberry, Jeanne K. DuShane, Benjamin L. King, Melissa S. Maginnis
Software Mentions: 3
Published: about 3 years ago
10.1155/2019/6545210
New Gene Markers of Angiogenesis and Blood Vessels Development in Porcine Ovarian Granulosa Cells during Short-Term Primary Culture In Vitro
Cited by: 20
Author(s): Błażej Chermuła, Maciej Brązert, Dariusz Iżycki, Sylwia Ciesiółka, Wiesława Kranc, Piotr Celichowski, Katarzyna Ożegowska, Mariusz J. Nawrocki, Maurycy Jankowski, Michal Ješeta, Paweł Antosik, Dorota Bukowska, Mariusz T. Skowroński, Klaus‐Peter Brüssow, M Bruska, Leszek Pawełczyk, Maciej Zabel, Michał Nowicki, Bartosz Kempisty
Software Mentions: 3
Published: almost 6 years ago
10.1155/2020/4927547
Integrated Transcriptomic Analysis Reveals the Molecular Mechanism of Meningiomas by Weighted Gene Coexpression Network Analysis
Cited by: 0
Author(s): Biao Yang, Shuxun Wei, Yupo Ma, Sheng‐Hua Chu
Software Mentions: 3
Published: over 4 years ago
10.1155/2021/9991726
Identification of Vital Hub Genes and Potential Molecular Pathways of Dermatomyositis by Bioinformatics Analysis
Cited by: 3
Author(s): Xueren Ouyang, Yuning Zeng, Xiaotao Jiang, Haowen Xu, Yile Ning
Software Mentions: 3
Published: about 3 years ago
10.1155/2021/5584681
Biodata Mining of Differentially Expressed Genes between Acute Myocardial Infarction and Unstable Angina Based on Integrated Bioinformatics
Cited by: 4
Author(s): Siyu Guo, Zhihong Huang, Xinkui Liu, Jingyuan Zhang, Peizhi Ye, Chao Wu, Shan Lu, Shanshan Jia, Xiaomeng Zhang, Xiuping Chen, Miaomiao Wang, Jiarui Wu
Software Mentions: 3
Published: about 3 years ago
10.18632/aging.103888
Revealing the targets and mechanisms of vitamin A in the treatment of COVID-19
Cited by: 55
Author(s): Rong Li, Ka Wu, Yu Liu, Liang Xiao, William Ka Fai Tse, Yang Lu, Keng Po Lai
Software Mentions: 3
Published: over 4 years ago
10.1186/s12870-021-02867-0
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)
Cited by: 7
Author(s): Denise Herbert, Thomas P. Gross, Oliver Rupp, Annette Becker
Software Mentions: 3
Published: almost 4 years ago
10.7717/peerj.6091
Screening of prognostic biomarkers for endometrial carcinoma based on a ceRNA network
Cited by: 6
Author(s): Mingjun Zheng, Rui Gou, Wenchao Zhang, Xin Nie, Jing Wang, Lingling Gao, Juanjuan Liu, Xiao Li, Bei Lin
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13578-021-00555-y
DNA primase subunit 1 deteriorated progression of hepatocellular carcinoma by activating AKT/mTOR signaling and UBE2C-mediated P53 ubiquitination
Cited by: 25
Author(s): Mengqi Zhu, Mengna Wu, Saiyan Bian, Qisheng Song, Mingbing Xiao, Hua Huang, You Li, Jianping Zhang, Jie Zhang, Chun Cheng, Wenkai Ni, Wenjie Zheng
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-019-6223-y
Comparative transcriptomics in Syllidae (Annelida) indicates that posterior regeneration and regular growth are comparable, while anterior regeneration is a distinct process
Cited by: 23
Author(s): Rannyele Passos Ribeiro, Guillermo Ponz‐Segrelles, Christoph Bleidorn, M. Teresa Aguado
Software Mentions: 3
Published: about 5 years ago
10.1167/iovs.17-22173
Novel Myopia Genes and Pathways Identified From Syndromic Forms of Myopia
Cited by: 47
Author(s): Daniel Ian Flitcroft, James Loughman, Christine F. Wildsoet, Cathy Williams, Jeremy A. Guggenheim
Software Mentions: 3
Published: almost 7 years ago
10.3390/genes10080576
A High Protein Model Alters the Endometrial Transcriptome of Mares
Cited by: 5
Author(s): Yatta Linhares Boakari, Hesham A. Ali, Pouya Dini, Shavahn C. Loux, Cláudia Barbosa Fernandes, Kirsten E. Scoggin, A. Esteller-Vico, L.M. Lawrence, Barry A. Ball
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2020.573877
Analysis of Hub Genes Involved in Distinction Between Aged and Fetal Bone Marrow Mesenchymal Stem Cells by Robust Rank Aggregation and Multiple Functional Annotation Methods
Cited by: 6
Author(s): Xiaoyao Liu, Mingjing Yin, Junlong Da, Kai Zhang, Xinjian Zhang, Lixue Liu, Jianqun Wang, Han Jin, Zhongshuang Liu, Bin Zhang, Ying Li
Software Mentions: 3
Published: almost 4 years ago
10.1155/2020/7524057
Construction and Validation of Predictive Model to Identify Critical Genes Associated with Advanced Kidney Disease
Cited by: 4
Author(s): Guangda Xin, Guangyu Zhou, Wenlong Zhang, Xiaofei Zhang
Software Mentions: 3
Published: about 4 years ago
10.1128/mSystems.00491-20
Integrated Metabolic Modeling, Culturing, and Transcriptomics Explain Enhanced Virulence of Vibrio cholerae during Coinfection with Enterotoxigenic Escherichia coli
Cited by: 8
Author(s): Alyaa M. Abdel-Haleem, Vaishnavi Ravikumar, Boyang Ji, Katsuhiko Mineta, Xin Gao, Jens Nielsen, Takashi Gojobori, Ivan Mijaković
Software Mentions: 3
Published: about 4 years ago