Projects: cran: EpiNow2
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/EpiNow2
Estimate Real-Time Case Counts and Time-Varying Epidemiological
Parameters
7 versions
Latest release: over 2 years ago
906 downloads last month
Enhanced Analysis
Educational Contributors:
sebastian.funk@lshtm.ac.uk
james.azam@lshtm.ac.uk
adam.kucharski@lshtm.ac.uk
j.hellewell14@imperial.ac.uk
Repository Activity:
Repository Owner:
Epiforecasts (organization)
Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses. Academic
Researchers at the London School of Hygiene & Tropical Medicine doing research to forecast infectious diseases and perform real-time analyses. Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+80
Educational commit emails
4 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+14
Science terms in README
7 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning EpiNow2 7
10.1371/journal.pntd.0009327
Deciphering the introduction and transmission of SARS-CoV-2 in the Colombian Amazon BasinCited by: 7
Author(s): Nathalia Ballesteros, Marina Muñoz, Luz Helena Patiño, Carolina Hernández, Felipe González-Casabianca, Iván Carroll, Mauricio Santos-Vega, Jaime Cascante, Andrés Ángel, Alejandro Feged-Rivadeneira, Mónica Palma-Cuero, Carolina Flórez, Sergio Gómez, Adriana van de Guchte, Zenab Khan, Jayeeta Dutta, Ajay Obla, Hala Alshammary, Ana S. González-Reiche, Matthew M. Hernandez, Emilia Mia Sordillo, Viviana Simon, Harm van Bakel, Alberto Paníz-Mondolfi, Juan David Ramírez
Software Mentions: 3
Published: about 5 years ago
10.3390/vaccines9070719
Signatures of the Venezuelan Humanitarian Crisis in the First Wave of COVID-19: Fuel Shortages and Border MigrationCited by: 8
Author(s): Margarita Lampo, Juan V Hernández-Villena, Jaime Cascante, María F. Vincenti-González, David A. Forero‐Peña, Maikell Segovia, Katie Hampson, Julio Castro, María Eugenia Grillet
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pcbi.1008409
Practical considerations for measuring the effective reproductive number, RtCited by: 313
Author(s): Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, René Niehus, James A. Hay, Pablo Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Software Mentions: 2
Published: over 5 years ago
10.1101/2020.06.18.20134858
Practical considerations for measuring the effective reproductive number, <i>R<sub>t</sub></i>Cited by: 60
Author(s): Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, René Niehus, James A. Hay, Pablo Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherrat, Robin N Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey
Software Mentions: 2
Published: almost 6 years ago
10.1098/rstb.2020.0283
Exploring surveillance data biases when estimating the reproduction number: with insights into subpopulation transmission of COVID-19 in EnglandCited by: 27
Author(s): Katharine Sherratt, Sam Abbott, Sophie Meakin, Joel Hellewell, James D. Munday, Nikos I. Bosse, Mark Jit, Sebastian Funk
Software Mentions: 1
Published: about 5 years ago
10.3390/healthcare9091173
Effective Preventive Strategies to Prevent Secondary Transmission of COVID-19 in Hemodialysis Unit: The First Month of Community Outbreak in TaiwanCited by: 5
Author(s): Chun-Yu Chen, Jung-Jr Ye, Ting-Shuo Huang, Chin‐Chan Lee, Yih-Ting Chen, Cheng-Kai Hsu, Heng-Jung Hsu, Chiao‐Yin Sun, Heng‐Chih Pan, Kuo-Su Chen, Huang‐Kai Kao, Chun-Han Ko, Yun-Hsuan She, Chunying Wu, Chi-Chun Lai, Shiuh-Lin Hwang, I-Wen Wu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12916-021-02107-0
Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey dataCited by: 19
Author(s): James D. Munday, Christopher I Jarvis, Amy Gimma, Kerry L. M. Wong, Kevin van Zandvoort, Yang Liu, Joel Hellewell, Nicholas Davies, C. Julian Villabona-Arenas, Rosalind M Eggo, Akira Endo, Nikos I. Bosse, Hamish Gibbs, Carl A. B. Pearson, Fiona Yueqian Sun, Mark Jit, Kathleen O’Reilly, Yalda Jafari, Katherine E. Atkins, Naomi R. Waterlow, Alicia Roselló, Yung-Wai Desmond Chan, Anna M Foss, Billy J Quilty, Timothy Russell, Stefan Flasche, Simon R. Procter, William Waites, Rosanna C. Barnard, Adam J. Kucharski, Thibaut Jombart, Graham Medley, Rachel Lowe, Fabienne Krauer, Damien C. Tully, Kiesha Prem, Jiayao Lei, Oliver J. Brady, Frank Sandmann, Sophie Meakin, Kaja Abbas, Gwenan M. Knight, Matthew Quaife, Mihály Koltai, Sam Abbott, Samuel Clifford, Sebastian Funk, W. John Edmunds
Software Mentions: 1
Published: almost 5 years ago