Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: EpiModel

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/EpiModel

Mathematical Modeling of Infectious Disease Dynamics
39 versions
Latest release: over 1 year ago
2 dependent packages
999 downloads last month

Papers Mentioning EpiModel 19

10.1371/journal.pcbi.1005642

Learning infectious disease epidemiology in a modern framework
Cited by: 3
Author(s): Andreas Handel
Software Mentions: 5
Published: about 7 years ago

Evaluating distributional regression strategies for modelling self-reported sexual age-mixing
Cited by: 0
Author(s): Timothy M Wolock, Seth Flaxman, Kathryn Risher, Tawanda Dadirai, Simon Gregson, Jeffrey W. Eaton
Software Mentions: 3
Published: over 3 years ago

10.1098/rspb.2017.1899

Model recommendations meet management reality: implementation and evaluation of a network-informed vaccination effort for endangered Hawaiian monk seals
Cited by: 16
Author(s): Stacie J. Robinson, Michelle Barbieri, Samantha Murphy, Jason D. Baker, Albert L. Harting, Meggan E. Craft, Charles L. Littnan
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0256179

Understanding and countering the spread of conspiracy theories in social networks: Evidence from epidemiological models of Twitter data
Cited by: 6
Author(s): Julian Kauk, Helene Kreysa, Stefan R. Schweinberger
Software Mentions: 2
Published: over 3 years ago

10.1186/s12874-018-0541-7

A dynamic Bayesian Markov model for health economic evaluations of interventions in infectious disease
Cited by: 12
Author(s): Katrin Haeussler, Ardo van den Hout, Gianluca Baio
Software Mentions: 2
Published: over 6 years ago

10.1093/ve/veab011

Test-and-treat coverage and HIV virulence evolution among men who have sex with men
Cited by: 1
Author(s): Sarah E. Stansfield, Joshua T. Herbeck, Geoffrey S. Gottlieb, Neil F. Abernethy, James T. Murphy, John E. Mittler, Steven M. Goodreau
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0156844

OFFl Models: Novel Schema for Dynamical Modeling of Biological Systems
Cited by: 2
Author(s): C. Brandon Ogbunugafor, Sean P. Robinson
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0006806

Comparison of Projected and Actual Outcomes of the HIV/AIDS Epidemic in Malawi, 1990–2000
Cited by: 0
Author(s): Suja S. Rajan, David C. Sokal
Software Mentions: 2
Published: about 15 years ago

10.3389/fpubh.2021.602353

Data-Driven and Machine-Learning Methods to Project Coronavirus Disease 2019 Pandemic Trend in Eastern Mediterranean
Cited by: 2
Author(s): Wenbo Huang, Shuang Ao, Dong‐Dong Han, Yuming Liu, Shuang Liu, Yaojiang Huang
Software Mentions: 2
Published: over 3 years ago

10.2196/19353

Modeling COVID-19 Latent Prevalence to Assess a Public Health Intervention at a State and Regional Scale: Retrospective Cohort Study
Cited by: 13
Author(s): Philip Turk, Shih-Hsiung Chou, Marc Kowalkowski, Pooja Palmer, Jennifer S Priem, Melanie Spencer, Yhenneko J. Taylor, Andrew McWilliams
Software Mentions: 2
Published: over 4 years ago

10.2196/publichealth.9357

Development of an Agent-Based Model to Investigate the Impact of HIV Self-Testing Programs on Men Who Have Sex With Men in Atlanta and Seattle
Cited by: 12
Author(s): Wei Luo, David A. Katz, Deven T. Hamilton, Jennie McKenney, Samuel M. Jenness, Steven M. Goodreau, Joanne D. Stekler, Eli S. Rosenberg, Patrick S. Sullivan, Susan Cassels
Software Mentions: 2
Published: over 6 years ago

10.1007/s10844-021-00649-6

UTLDR: an agent-based framework for modeling infectious diseases and public interventions
Cited by: 1
Author(s): Giulio Rossetti, Letizia Milli, Salvatore Citraro, Virginia Morini
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-40151-2

Comparing the effects of non-homogenous mixing patterns on epidemiological outcomes in equine populations: A mathematical modelling study
Cited by: 6
Author(s): Rachael M. Milwid, Terri L. O’Sullivan, Zvonimir Poljak, Marek Laskowski, Amy L. Greer
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85252-z

A modeling study to inform screening and testing interventions for the control of SARS-CoV-2 on university campuses
Cited by: 26
Author(s): Ben Lopman, Carol Liu, Adrien Le Guillou, Andreas Handel, Timothy L. Lash, Alexander Isakov, Samuel M. Jenness
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0247770

A stochastic network-based model to simulate farm-level transmission of African swine fever virus in Vietnam
Cited by: 7
Author(s): Hu Suk Lee, Krishna K. Thakur, Phạm Thành Long, Tung Duy Dao, Vuong Nghia Bui, Vuong Nghia Bui, Huy Nguyen Quang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0169484

Individual HIV Risk versus Population Impact of Risk Compensation after HIV Preexposure Prophylaxis Initiation among Men Who Have Sex with Men
Cited by: 35
Author(s): Samuel M. Jenness, Akshay Sharma, Steven M. Goodreau, Eli S. Rosenberg, Kevin M Weiss, Karen W. Hoover, Dawn K. Smith, Patrick S. Sullivan
Software Mentions: 1
Published: almost 8 years ago

10.1017/S0950268820002289

Massive application of the SARS-CoV-2 diagnostic test: simulation of its effect on the evolution of the epidemic in Spain
Cited by: 2
Author(s): Jacobo López‐Abente, Clara Valor-Suárez, Gonzalo López‐Abente
Software Mentions: 1
Published: almost 5 years ago

10.2196/18965

Flexible, Freely Available Stochastic Individual Contact Model for Exploring COVID-19 Intervention and Control Strategies: Development and Simulation
Cited by: 9
Author(s): Tim Churches, Louisa Jorm
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0217315

Modeling the joint effects of adolescent and adult PrEP for sexual minority males in the United States
Cited by: 10
Author(s): Deven T. Hamilton, Eli S. Rosenberg, Samuel M. Jenness, Patrick S. Sullivan, Li Yan Wang, Richard Dunville, Lisa C. Barrios, Maria Aslam, Steven M. Goodreau
Software Mentions: 1
Published: over 5 years ago