Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: EMMREML

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/EMMREML

Fitting Mixed Models with Known Covariance Structures
4 versions
Latest release: over 9 years ago
2 dependent packages
849 downloads last month

Papers Mentioning EMMREML 22

10.1007/s00122-020-03716-8

Linear models for diallel crosses: a review with R functions
Cited by: 11
Author(s): Andrea Onofri, Niccolò Terzaroli, Luigi Russi
Software Mentions: 19
Published: about 4 years ago

10.1371/journal.pone.0156744

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer
Cited by: 408
Author(s): Giovanny Covarrubias‐Pazaran
Software Mentions: 9
Published: over 8 years ago

10.3835/plantgenome2017.03.0015

Prospects for Genomic Selection in Cassava Breeding
Cited by: 95
Author(s): Marnin D. Wolfe, Dunia Pino Del Carpio, Olumide Alabi, Lydia Ezenwaka, Ugochukwu N. Ikeogu, Siraj Ismail Kayondo, Roberto Lozano, Uche Godfrey Okeke, Alfred Ozimati, Williams Esuma, Chiedozie Egesi, Robert Kawuki, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 6
Published: about 7 years ago

10.1093/g3journal/jkaa017

AlphaSimR: an R package for breeding program simulations
Cited by: 88
Author(s): R. Chris Gaynor, Gregor Gorjanc, John M. Hickey
Software Mentions: 5
Published: about 4 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.580136

Retrospective Quantitative Genetic Analysis and Genomic Prediction of Global Wheat Yields
Cited by: 7
Author(s): Philomin Juliana, Ravi P. Singh, Hans‐Joachim Braun, Julio Huerta‐Espino, Leonardo Crespo‐Herrera, Thomas Payne, Jesse Poland, Sandesh Shrestha, Uttam Kumar, Arun Kumar Joshi, Muhammad Imtiaz, Mohammad Zillur Rahman, Fernando H. Toledo
Software Mentions: 4
Published: over 4 years ago

10.1534/g3.118.200646

A Low Resolution Epistasis Mapping Approach To Identify Chromosome Arm Interactions in Allohexaploid Wheat
Cited by: 10
Author(s): Nicholas Santantonio, Jean‐Luc Jannink, Mark E. Sorrells
Software Mentions: 4
Published: almost 6 years ago

10.2135/cropsci2018.01.0060

Genetic Variation and Trait Correlations in an East African Cassava Breeding Population for Genomic Selection
Cited by: 14
Author(s): Alfred Ozimati, R. Kawuki, Williams Esuma, Siraj Ismail Kayondo, Anthony Pariyo, Marnin D. Wolfe, Jean‐Luc Jannink
Software Mentions: 4
Published: almost 6 years ago

10.1534/g3.116.033332

Marker-Based Estimates Reveal Significant Nonadditive Effects in Clonally Propagated Cassava (<i>Manihot esculenta</i>): Implications for the Prediction of Total Genetic Value and the Selection of Varieties
Cited by: 31
Author(s): Marnin D. Wolfe, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 4
Published: about 8 years ago

10.1007/s00122-018-3206-3

Integrating genomic-enabled prediction and high-throughput phenotyping in breeding for climate-resilient bread wheat
Cited by: 71
Author(s): Philomin Juliana, Osval A. Montesinos-L֯ópez, José Crossa, Suchismita Mondal, Lorena González Pérez, Jesse Poland, Julio Huerta Espino, Leonardo Crespo‐Herrera, Velu Govindan, Susanne Dreisigacker, Sandesh Shrestha, Paulino Pérez‐Rodríguez, Francisco Pinto, Ravi P. Singh
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.564183

Genomic Selection for Grain Yield in the CIMMYT Wheat Breeding Program—Status and Perspectives
Cited by: 25
Author(s): Philomin Juliana, Ravi P. Singh, Hans‐Joachim Braun, Julio Huerta‐Espino, Leonardo Crespo‐Herrera, Velu Govindan, Suchismita Mondal, Jesse Poland, Sandesh Shrestha
Software Mentions: 2
Published: over 4 years ago

10.1007/s00122-018-3065-y

Single and multiple phenotype QTL analyses of downy mildew resistance in interspecific grapevines
Cited by: 34
Author(s): Konstantin Divilov, Paola Barba, Lance Cadle‐Davidson, Bruce I. Reisch
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0162860

Breeding Value of Primary Synthetic Wheat Genotypes for Grain Yield
Cited by: 44
Author(s): Jafar Jafarzadeh, David Bonnett, Jean‐Luc Jannink, Deniz Akdemir, Susanne Dreisigacker, Mark E. Sorrells
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.116.032888

Canopy Temperature and Vegetation Indices from High-Throughput Phenotyping Improve Accuracy of Pedigree and Genomic Selection for Grain Yield in Wheat
Cited by: 270
Author(s): Jessica Rutkoski, Jesse Poland, Suchismita Mondal, Enrique Autrique, Lorena González Pérez, José Crossa, M.P. Reynolds, Ravi P. Singh
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.120.401300

Phantom Epistasis in Genomic Selection: On the Predictive Ability of Epistatic Models
Cited by: 23
Author(s): Matías F. Schrauf, Johannes W. R. Martini, Henner Simianer, Gustavo de los Campos, Rodolfo Juan Carlos Cantet, Jan A. Freudenthal, Arthur Korte, S. Munilla
Software Mentions: 2
Published: over 4 years ago

10.1093/g3journal/jkaa053

Multivariate linear mixed model enhanced the power of identifying genome-wide association to poplar tree heights in a randomized complete block design
Cited by: 13
Author(s): Yuhua Chen, Hualong Wu, Wenguo Yang, Wei Zhao, Chunfa Tong
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12711-015-0116-6

Optimization of genomic selection training populations with a genetic algorithm
Cited by: 110
Author(s): Deniz Akdemir, Julio Isidro Sánchez, Jean‐Luc Jannink
Software Mentions: 2
Published: over 9 years ago

10.1007/s00122-021-03868-1

Accounting for epistasis improves genomic prediction of phenotypes with univariate and bivariate models across environments
Cited by: 3
Author(s): Elaheh Vojgani, Torsten Pook, Johannes W. R. Martini, Armin C. Hölker, Manfred Mayer, Chris‐Carolin Schön, Henner Simianer
Software Mentions: 1
Published: over 3 years ago

10.3835/plantgenome2017.06.0050

Regional Heritability Mapping Provides Insights into Dry Matter Content in African White and Yellow Cassava Populations
Cited by: 9
Author(s): Uche Godfrey Okeke, Deniz Akdemir, Ismail Rabbi, Peter Kulakow, Jean‐Luc Jannink
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17366-2

Prediction of genomic breeding values using new computing strategies for the implementation of MixP
Cited by: 6
Author(s): Linsong Dong, Ming Fang, Zhiyong Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-19696-1

Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta
Cited by: 59
Author(s): Siraj Ismail Kayondo, Dunia Pino Del Carpio, Roberto Lozano, Alfred Ozimati, Marnin D. Wolfe, Yona Baguma, Vernon Gracen, Samuel Kwame Offei, Morag Ferguson, Robert Kawuki, Jean‐Luc Jannink
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-016-2756-5

Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)
Cited by: 42
Author(s): Linsong Dong, Shijun Xiao, Qiurong Wang, Zhiyong Wang
Software Mentions: 1
Published: over 8 years ago