Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: DiffCorr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DiffCorr

Analyzing and Visualizing Differential Correlation Networks in Biological Data
3 versions
Latest release: over 1 year ago
372 downloads last month

Papers Mentioning DiffCorr 21

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: over 5 years ago

10.3389/fgene.2019.00594

BioNetStat: A Tool for Biological Networks Differential Analysis
Cited by: 21
Author(s): Vinícius Carvalho Jardim, Suzana de Siqueira Santos, André Fujita, Marcos Silveira Buckeridge
Software Mentions: 22
Published: over 5 years ago

10.1186/s12859-017-1579-y

metaX: a flexible and comprehensive software for processing metabolomics data
Cited by: 402
Author(s): Bo Wen, Zhanlong Mei, Chunwei Zeng, Siqi Liu
Software Mentions: 11
Published: almost 8 years ago

10.1186/s12918-016-0349-1

DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Cited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: about 8 years ago

10.1371/journal.pone.0240523

Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA)
Cited by: 12
Author(s): Deisy Morselli Gysi, Tiago de Miranda Fragoso, Fatemeh Zebardast, Wesley Bertoli, Volker Busskamp, Eivind Almaas, Katja Nowick
Software Mentions: 8
Published: about 4 years ago

10.3390/metabo10050202

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources
Cited by: 59
Author(s): Tara Eicher, Garrett Kinnebrew, Andrew Patt, Kyle Spencer, Kevin L. Ying, Qin Ma, Raghu Machiraju, Ewy A. Mathé
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pone.0079729

DCGL v2.0: An R Package for Unveiling Differential Regulation from Differential Co-expression
Cited by: 76
Author(s): Jing Yang, Hui Yu, Baohong Liu, Zhongming Zhao, Lei Liu, Liangxiao Ma, Yixue Li, Yuanyuan Li
Software Mentions: 7
Published: about 11 years ago

10.3390/ijms20020263

Molecular Network-Based Drug Prediction in Thyroid Cancer
Cited by: 14
Author(s): Xingyu Xu, Hang Long, Baohang Xi, Binbin Ji, Zejun Li, Yunyue Dang, Cheng Jiang, Yao Yao, Jialiang Yang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.647653

DysPIA: A Novel Dysregulated Pathway Identification Analysis Method
Cited by: 1
Author(s): Limei Wang, Weixin Xie, Kongning Li, Zhenzhen Wang, Xia Li, Weixing Feng, Li Jin
Software Mentions: 6
Published: over 3 years ago

10.1128/mSphere.00982-20

Decreased Ecological Resistance of the Gut Microbiota in Response to Clindamycin Challenge in Mice Colonized with the Fungus Candida albicans
Cited by: 2
Author(s): Laura Markey, Antonia Pugliese, Theresa Tian, Farrah Roy, Kyongbum Lee, Carol A. Kumamoto
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13104-016-2331-9

Differential correlation for sequencing data
Cited by: 18
Author(s): Charlotte Siska, Katerina Kechris
Software Mentions: 5
Published: almost 8 years ago

10.1098/rsif.2019.0610

Construction, comparison and evolution of networks in life sciences and other disciplines
Cited by: 10
Author(s): Deisy Morselli Gysi, Katja Nowick
Software Mentions: 4
Published: over 4 years ago

10.3390/metabo9060117

Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
Cited by: 42
Author(s): Su H. Chu, Mengna Huang, Rachel S. Kelly, Elisa Benedetti, Jalal K. Siddiqui, Oana A. Zeleznik, Alexandre Pereira, David M. Herrington, Craig E. Wheelock, Jan Krumsiek, Michael J. McGeachie, Steven C. Moore, Peter Kraft, Ewy A. Mathé, Jessica Lasky‐Su
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.675438

Identification of Key Genes With Differential Correlations in Lung Adenocarcinoma
Cited by: 9
Author(s): You Zhou, Bin Xu, Yi Zhou, Jian Liu, Xiao Zheng, Yingting Liu, Hepu Deng, Ming Liu, Xiubao Ren, Jianchuan Xia, Xiangyin Kong, Tao Huang, Jingting Jiang
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0197329

Specific serum and CSF microRNA profiles distinguish sporadic behavioural variant of frontotemporal dementia compared with Alzheimer patients and cognitively healthy controls
Cited by: 58
Author(s): Johannes Denk, Felix Oberhauser, Johannes Kornhuber, Jens Wiltfang, Klaus Faßbender, Matthias L. Schroeter, Alexander E Volk, Janine Diehl‐Schmid, Johannes Prudlo, Adrian Danek, G. Bernhard Landwehrmeyer, Martin Lauer, Markus Otto, Holger Jahn
Software Mentions: 2
Published: over 6 years ago

10.1038/srep35064

Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection
Cited by: 24
Author(s): Zhenhong Jiang, Xiaobao Dong, Zhigang Li, Fei He, Ziding Zhang
Software Mentions: 2
Published: about 8 years ago

10.1186/s13040-017-0152-6

Metrics to estimate differential co-expression networks
Cited by: 9
Author(s): Elpidio-Emmanuel Gonzalez-Valbuena, Víctor Treviño
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-92312-x

Network of biomarkers and their mediation effects on the associations between regular exercise and the incidence of cardiovascular & metabolic diseases
Cited by: 4
Author(s): Joo Yong Park, Jaesung Choi, Ji Eun Kim, Mi-Young Lee, Aesun Shin, Jong koo Lee, Daehee Kang, Ji Yeob Choi
Software Mentions: 1
Published: over 3 years ago

10.1186/s10020-019-0106-1

Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia
Cited by: 6
Author(s): Zaynab Mousavian, Abbas Nowzari-Dalini, Yasir Rahmatallah, Ali Masoudi‐Nejad
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-018-2085-6

IntLIM: integration using linear models of metabolomics and gene expression data
Cited by: 32
Author(s): Jalal K. Siddiqui, Elizabeth Baskin, Mingrui Liu, Carmen Z. Cantemir-Stone, Bofei Zhang, Russell Bonneville, Joseph P. McElroy, Kevin R. Coombes, Ewy A. Mathé
Software Mentions: 1
Published: almost 7 years ago