cran: DA | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-8-90

Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data
Cited by: 10
Author(s): Caroline Truntzer, Catherine Mercier, Jacques Estève, Christian Gautier, Pascal Roy
Software Mentions: 3
Published: over 17 years ago

10.1002/ctm2.458

Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage
Cited by: 28
Author(s): Han Jin, Pieter Goossens, Péter Juhász, Wouter J. Eijgelaar, Marco Manca, Jöel Karel, Evgueni Smirnov, C.J.J.M. Sikkink, Barend Mees, Olivia J. Waring, Kim van Kuijk, Gregorio E. Fazzi, Marion J.J. Gijbels, Martina Kutmon, Chris T. Evelo, Ulf Hedin, M. J. A. P. Daemen, Judith C. Sluimer, Ljubica Matic, Erik A. L. Biessen
Software Mentions: 3
Published: over 3 years ago

10.1007/s00018-020-03553-4

Prevention of age-associated neuronal hyperexcitability with improved learning and attention upon knockout or antagonism of LPAR2
Cited by: 13
Author(s): Caroline Fischer, Heiko Endle, Lana Schumann, Annett Wilken-Schmitz, Julia Kaiser, Susanne Gerber, Christina Francisca Vogelaar, Mirko H. H. Schmidt, Robert Nitsch, Isabel Faria Snodgrass, Dominique Thomas, Johannes Vogt, Irmgard Tegeder
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0239701

Transcriptomic and metabolomic profiling of melatonin treated soybean (Glycine max L.) under drought stress during grain filling period through regulation of secondary metabolite biosynthesis pathways
Cited by: 14
Author(s): Liang Cao, Xijun Jin, Yuxian Zhang, Mingcong Zhang, Yanhong Wang
Software Mentions: 3
Published: about 4 years ago

10.3390/nu9050485

Urinary Metabolomics in Pediatric Obesity and NAFLD Identifies Metabolic Pathways/Metabolites Related to Dietary Habits and Gut-Liver Axis Perturbations
Cited by: 53
Author(s): Jacopo Troisi, Luca Pierri, Annamaria Landolfi, F. Marcianò, A. Bisogno, F. Belmonte, Carmen Palladino, Salvatore Guercio Nuzio, Pietro Campiglia, Pietro Vajro
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms22168751

Integrated Metabolomic and Transcriptomic Analysis Reveals the Flavonoid Regulatory Network by Eutrema EsMYB90
Cited by: 8
Author(s): Yuting Qi, Chuanshun Li, Chonghao Duan, Caihong Gu, Quan Zhang
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms21041546

The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming
Cited by: 12
Author(s): Olga Andrzejczak, Jesper Foged Havelund, Weiqing Wang, Sergey I. Kovalchuk, Christina E Hagensen, Harald Hasler-Sheetal, Ole N. Jensen, Adelina Rogowska-Wrzesińska, Ian Max Møller, Kim H. Hebelstrup
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0256388

Differential expression of urinary volatile organic compounds by sex, male reproductive status, and pairing status in the maned wolf (Chrysocyon brachyurus)
Cited by: 3
Author(s): Marieke K. Jones, Thomas B. Huff, Elizabeth W. Freeman, Nucharin Songsasen
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20020401

Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic Profiles
Cited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: almost 6 years ago

10.1186/2049-3002-2-18

Metabolic reprogramming induced by ketone bodies diminishes pancreatic cancer cachexia
Cited by: 179
Author(s): Surendra K. Shukla, Teklab Gebregiworgis, Vinee Purohit, Nina V. Chaika, Venugopal Gunda, Prakash Radhakrishnan, Kamiya Mehla, Iraklis I. Pipinos, Robert Powers, Fang Yu, Pankaj K. Singh
Software Mentions: 3
Published: about 10 years ago

10.1002/ijc.31536

Pre‐diagnostic blood immune markers, incidence and progression of B‐cell lymphoma and multiple myeloma: Univariate and functionally informed multivariate analyses
Cited by: 13
Author(s): Roel Vermeulen, Fatemeh Saberi Hosnijeh, Barbara Bodinier, Lützen Portengen, Benoît Liquet, Javiera Garrido-Manriquez, Henk M. Lokhorst, Ingvar A. Bergdahl, Soterios A. Kyrtopoulos, Ann Sofie Johansson, Panagiotis Georgiadis, Beatrice Melin, Domenico Palli, Vittorio Krogh, Salvatore Panico, Carlotta Sacerdote, Rosario Tumino, Paolo Víneis, Raphaële Castagné, Marc Chadeau‐Hyam, Maria Botsivali, Aristotelis Chatziioannou, Ioannis Valavanis, Jos Kleinjans, Theo M. C. M. de Kok, Hector C. Keun, Toby J. Athersuch, Rachel S. Kelly, Per Lenner, Göran Hallmans, Euripides G. Stephanou, Antonis Myridakis, Manolis Kogevinas, Lucia Fazzo, Marco De Santis, Pietro Comba, Benedetta Bendinelli, Hannu Kiviranta, Panu Rantakokko, Riikka Airaksinen, Päivi Ruokojärvi, Mark S. Gilthorpe, Sarah Fleming, Thomas Fleming, Yu Kang Tu, Thomas Lundh, Kuo Liong Chien, Wei-Jen Chen, Wen‐Chung Lee, Chuhsing Kate Hsiao, Po-Chen Kuo, Hung Hung, Shu-Fen Liao
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0159548

Metabolic Profiles of Obesity in American Indians: The Strong Heart Family Study
Cited by: 14
Author(s): Qi Zhao, Yun Zhu, Lyle G. Best, Jason G. Umans, Karan Uppal, Vi Linh Tran, Dean P. Jones, Elisa T. Lee, Barbara V. Howard, Jinying Zhao
Software Mentions: 3
Published: over 8 years ago

10.1099/jmm.0.028126-0

Microbial community and metabolomic comparison of irritable bowel syndrome faeces
Cited by: 190
Author(s): Kannan Ponnusamy, Jung Ran Choi, Jiyoung Kim, Sun-Young Lee, Choong Hwan Lee
Software Mentions: 3
Published: over 13 years ago

10.1002/cam4.1107

Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis
Cited by: 34
Author(s): Mayank Saraswat, Sakari Joenväärä, Hanna Seppänen, Harri Mustonen, Caj Haglund, Risto Renkonen
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0036297

Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (PPAR) γ Activators and Pan-PPAR Partial Agonists
Cited by: 163
Author(s): M.V. Liberato, Alessandro S. Nascimento, Steven D. Ayers, Jean Z. Lin, Aleksandra Čvoro, Rodrigo L. Silveira, Leandro Martı́nez, Paulo C. T. Souza, Daniel Menezes Saidemberg, Tuo Deng, Angela Angelica Amato, Marie Togashi, Willa A. Hsueh, Kevin J. Phillips, Mário Sérgio Palma, Francisco de Assis Rocha Neves, Munir S. Skaf, Paul Webb, Igor Polikarpov
Software Mentions: 3
Published: over 12 years ago

10.1107/S1399004715005210

In meso in situ serial X-ray crystallography of soluble and membrane proteins
Cited by: 98
Author(s): Chia‐Ying Huang, V. Oliéric, Pikyee Ma, Ezequiel Panepucci, Kay Diederichs, Meitian Wang, Martin Caffrey
Software Mentions: 3
Published: over 9 years ago

10.3390/ijms161226133

A Combined Metabolomic and Proteomic Analysis of Gestational Diabetes Mellitus
Cited by: 24
Author(s): Joanna Hajduk, Agnieszka Klupczynska, Paweł Dereziński, Jan Matysiak, Piotr Kokot, Dorota Nowak, Marzena Gajęcka, Ewa Nowak‐Markwitz, Zenon J. Kokot
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-021-90737-y

Rapid evolution of mammalian APLP1 as a synaptic adhesion molecule
Cited by: 6
Author(s): Wataru Onodera, Toru Asahi, Naoya Sawamura
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-90931-y

1H NMR based metabolic profiling distinguishes the differential impact of capture techniques on wild bighorn sheep
Cited by: 3
Author(s): Galen O’Shea-Stone, Rachelle Lambert, Brian Tripet, J. G. Berardinelli, Jennifer M. Thomson, Valérie Copié, Robert A. Garrott
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-82201-8

A metabolomic approach to target antimalarial metabolites in the Artemisia annua fungal endophytes
Cited by: 24
Author(s): Hani A. Alhadrami, Ahmed M. Sayed, Ahmed O. El-Gendy, Yara I. Shamikh, Yasser Gaber, Walid Bakeer, Noheir H. Sheirf, Eman Zekry Attia, Gehan M. Shaban, Basma Ali Khalifa, Che Julius Ngwa, Gabriele Pradel, Mostafa E. Rateb, Hossam M. Hassan, Dalal Hussien M. Alkhalifah, Usama Ramadan Abdelmohsen, Wael N. Hozzein
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-77105-y

Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population
Cited by: 16
Author(s): Toshimori Kitami, Sanae Fukuda, Tamotsu Kato, Kouzi Yamaguti, Yasuhito Nakatomi, Emi Yamano, Yosky Kataoka, Kei Mizuno, Yuuri Tsuboi, Yasushi Kogo, Harukazu Suzuki, Masayoshi Itoh, M. Morioka, Hideya Kawaji, Haruhiko Koseki, Jun Kikuchi, Yoshihide Hayashizaki, Hiroshi Ohno, Hirohiko Kuratsune, Yasuyoshi Watanabe
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-84901-7

Association of maternal gut microbiota and plasma metabolism with congenital heart disease in offspring: a multi-omic analysis
Cited by: 7
Author(s): Tingting Wang, Lizhang Chen, Peng Huang, Tubao Yang, Senmao Zhang, Lijuan Zhao, Letao Chen, Zi‐Wei Ye, Liu Luo, Jiabi Qin
Software Mentions: 3
Published: over 3 years ago

10.3390/s121216291

Multivariate and Multiscale Data Assimilation in Terrestrial Systems: A Review
Cited by: 78
Author(s): Carsten Montzka, Valentijn R. N. Pauwels, Harrie‐Jan Hendricks Franssen, Xujun Han, Harry Vereecken
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41397-021-00237-5

Gene expression signatures predict response to therapy with growth hormone
Cited by: 1
Author(s): Adam Stevens, Philip Murray, Chiara De Leonibus, Terence Garner, Ekaterina Koledova, Geoffrey Ambler, Klaus Kapelari, Gerhard Binder, Mohamad Maghnie, Stefano Zucchini, Elena Bashnina, Julia Skorodok, Diego Yeste, Alicia Belgorosky, Juan-Pedro Lopez Siguero, Régis Coutant, Eirik Vangsøy-Hansen, Lars Hagenäs, Jovanna Dahlgren, Cheri Deal, Pierre Chatelain, Peter Clayton
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-57468-y

Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel Syndrome
Cited by: 33
Author(s): Johanna Sundin, Imran Aziz, Sofia Nordlander, Annikka Polster, Yue Hu, Luisa W. Hugerth, Alexandra Pennhag, Lars Engstrand, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-72145-w

Inhibition of enteric methanogenesis in dairy cows induces changes in plasma metabolome highlighting metabolic shifts and potential markers of emission
Cited by: 17
Author(s): Bénédict Yanibada, Ulli Martin Hohenester, Mélanie Petera, Cécile Canlet, Stéphanie Durand, Fabien Jourdan, Julien Bernard, Cécile Martin, Maguy Eugène, Diego P. Morgavi, Hamid Boudra
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-020-6522-3

Tuberomics: a molecular profiling for the adaption of edible fungi (Tuber magnatum Pico) to different natural environments
Cited by: 13
Author(s): Federico Vita, Beatrice Giuntoli, Edoardo Bertolini, Cosimo Taiti, Elettra Marone, Chiara D’Ambrosio, Emanuela Trovato, Danilo Sciarrone, Mariosimone Zoccali, Raffaella Balestrini, Andrea Scaloni, Luigi Mondello, Stefano Mancuso, Massimo Alessio, Amedeo Alpi
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12014-018-9221-1

High accuracy differentiating autoimmune pancreatitis from pancreatic ductal adenocarcinoma by immunoglobulin G glycosylation
Cited by: 23
Author(s): Hsi-Chang Shih, Ming‐Chu Chang, Chein‐Hung Chen, I‐Lin Tsai, San-Yuan Wang, Ya-Po Kuo, Chung-Hsuan Chen, Yu-Ting Chang
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0198156

Time course metabolome of Roux-en-Y gastric bypass confirms correlation between leptin, body weight and the microbiome
Cited by: 14
Author(s): Loqmane Seridi, Gregory C. Leo, G. Lynis Dohm, Walter J. Pories, James M. Lenhard
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj-cs.370

An integrated cuckoo search optimizer for single and multi-objective optimization problems
Cited by: 3
Author(s): Xiangbo Qi, Zhaohui Yuan, Yan Song
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-73747-0

A role for the immune system in advanced laryngeal cancer
Cited by: 9
Author(s): Marta Tagliabue, Fausto Maffini, Caterina Fumagalli, Sara Gandini, Daniela Lepanto, Federica Corso, Salvatore Cacciola, Alberto Ranghiero, Alessandra Rappa, Davide Vacirca, Maria Cossu Rocca, Daniela Alterio, Elena Guerini-Rocco, Augusto Cattaneo, Francesco Chu, Stefano Zorzi, Giuseppe Curigliano, Susanna Chiocca, Massimo Barberis, Giuseppe Viale, Mohssen Ansarin
Software Mentions: 3
Published: about 4 years ago

10.3390/s16071013

An Improved Simulated Annealing Technique for Enhanced Mobility in Smart Cities
Cited by: 17
Author(s): Hayder M. Amer, Naveed Salman, Matthew Hawes, Moumena Chaqfeh, Lyudmila Mihaylova, Martin Mayfield
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-19630-5

A procession of metabolic alterations accompanying muscle senescence in Manduca sexta
Cited by: 9
Author(s): Bernard Wone, Jason M. Kinchen, Elana R. Kaup
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-017-12254-1

Large-scale Metabolomic Analysis Reveals Potential Biomarkers for Early Stage Coronary Atherosclerosis
Cited by: 31
Author(s): Xueqin Gao, Chaofu Ke, Haixia Liu, Wei Liu, Kang Li, Bo Yu, Meng Sun
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-018-27964-3

Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics
Cited by: 14
Author(s): Emiro Buendía, Josefina Zakzuk, Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Luis Caraballo
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-07015-z

Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreas
Cited by: 9
Author(s): Christoffer Nord, Maria Eriksson, Andrea Dicker, Anna Eriksson, Eivind Grong, Erwin Ilegems, Ronald Mårvik, Bård Kulseng, Per Olof Berggren, András Gorzsás, Ulf Ahlgren
Software Mentions: 3
Published: over 7 years ago

10.3390/molecules24142582

Comprehensive Chemical Profiling and Multidirectional Biological Investigation of Two Wild Anthemis Species (Anthemis tinctoria var. Pallida and A. cretica subsp. tenuiloba): Focus on Neuroprotective Effects
Cited by: 22
Author(s): Giustino Orlando, Gökhan Zengin, Claudio Ferrante, Maurizio Ronci, Lucia Recinella, İsmail Şenkardeş, Reneta Gevrenova, Dimitrina Zheleva‐Dimitrova, Annalisa Chiavaroli, Sheila Leone, Simonetta Cristina Di Simone, Luigi Brunetti, Marie Carene Nancy Picot-Allain, Mohamad Fawzi Mahomoodally, Kouadio Ibrahime Sinan, Luigi Menghini
Software Mentions: 3
Published: over 5 years ago

10.1111/j.1365-294X.2010.04986.x

Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates
Cited by: 83
Author(s): Pauline Charruau, Carlos Fernandes, Pablo Orozco‐terWengel, Joris Peters, Luke Hunter, Hooshang Ziaie, Alireza Jourabchian, Houman Jowkar, George B. Schaller, Stéphane Ostrowski, Paul Vercammen, Thierry Grange, Christian Schlötterer, Antoinette Kotzé, Eva-María Geigl, Chris Walzer, Pamela A. Burger
Software Mentions: 3
Published: almost 14 years ago

10.1002/1878-0261.12642

Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors
Cited by: 7
Author(s): Xin Ku, Qiangling Sun, Lei Zhu, Zhenyu Gu, Yuchen Han, Ning Xu, Chen Meng, Xiaohua Yang, Wei Yan, Wentao Fang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12876-020-01281-4

Fecal microbiota composition is linked to the postoperative disease course in patients with Crohn’s disease
Cited by: 11
Author(s): Anna Strömbeck, Anders Lasson, Hans Strid, Johanna Sundin, Per-Ove Stotzer, Magnus Simrén, Maria K. Magnusson, Lena Öhman
Software Mentions: 3
Published: over 4 years ago

10.1186/s12862-014-0166-3

Species-specific ant brain manipulation by a specialized fungal parasite
Cited by: 96
Author(s): Charissa de Bekker, Lauren E. Quevillon, Philip B. Smith, Kimberly R. Fleming, Debashis Ghosh, Andrew D. Patterson, David Hughes
Software Mentions: 3
Published: about 10 years ago

10.1186/s40168-019-0738-y

Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale
Cited by: 16
Author(s): David Randall, Julius Kieswich, Jonathan R. Swann, Kieran McCafferty, Christoph Thiemermann, Michael A. Curtis, Lesley Hoyles, M. Yaqoob
Software Mentions: 3
Published: about 5 years ago

10.1186/s40168-021-01085-y

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics
Cited by: 14
Author(s): Patrick T. West, Samantha L. Peters, Matthew R. Olm, Feiqiao Brian Yu, Haley Gause, Yue Clare Lou, Brian Firek, Robyn Baker, Alexander D. Johnson, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Software Mentions: 3
Published: over 3 years ago

10.1042/BSR20202915

Lipid profiling of mouse intestinal organoids for studying APC mutations
Cited by: 3
Author(s): Zoë H. Jukes, Anne Freier, Maria Glymenaki, Richard C. D. Brown, Lee Parry, Elizabeth J. Want, Panagiotis A. Vorkas, Jia V. Li
Software Mentions: 3
Published: over 3 years ago

10.1186/s40168-020-00976-w

High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice
Cited by: 32
Author(s): Joan Serrano, Kathleen R. Smith, Audra L. Crouch, Vandana Sharma, Fanchao Yi, Veronika Vargova, Traci E. LaMoia, Lydia M. Dupont, Vanida A. Serna, Fang Tang, Laisa Gomes-Dias, Joshua J. Blakeslee, Emmanuel Hatzakis, Scott N. Peterson, Matthew Anderson, Richard E. Pratley, George A. Kyriazis
Software Mentions: 3
Published: almost 4 years ago

10.1038/srep17141

Preterm gut microbiota and metabolome following discharge from intensive care
Cited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-018-31264-1

Differentiation and comparison of Wolfiporia cocos raw materials based on multi-spectral information fusion and chemometric methods
Cited by: 19
Author(s): Yan Li, Yuanzhong Wang
Software Mentions: 3
Published: about 6 years ago

10.3389/fmolb.2015.00004

A data preprocessing strategy for metabolomics to reduce the mask effect in data analysis
Cited by: 70
Author(s): Jun Yang, Xinjie Zhao, Xin Lü, Xiaohui Lin, Guowang Xu
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2016.00701

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: over 8 years ago

10.3389/fnut.2021.702085

Changes in Intestinal Flora Structure and Metabolites Are Associated With Myocardial Fibrosis in Patients With Persistent Atrial Fibrillation
Cited by: 4
Author(s): Langsha Liu, Juan Su, Rui Li, Fanyan Luo
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2020.569727

Alterations of Gut Microbiome and Metabolite Profiling in Mice Infected by Schistosoma japonicum
Cited by: 27
Author(s): Yue Hu, Jiansong Chen, Yongping Xu, Hongli Zhou, Ping Huang, Yu-Bin Ma, Minzhao Gao, Shaoyun Cheng, Haiyun Zhou, Ziquan Lv
Software Mentions: 3
Published: about 4 years ago

10.3389/fimmu.2021.694344

Mechanism of the Immunomodulatory Effect of the Combination of Live Bifidobacterium, Lactobacillus, Enterococcus, and Bacillus on Immunocompromised Rats
Cited by: 15
Author(s): Longxian Lv, Deguang Mu, Yi‐Ling Du, Yan Ren, Huiyong Jiang
Software Mentions: 3
Published: over 3 years ago

10.3390/metabo8030050

Potential Metabolomic Linkage in Blood between Parkinson’s Disease and Traumatic Brain Injury
Cited by: 14
Author(s): Massimo S. Fiandaca, Thomas Groß, Thomas M. Johnson, Michele T.M. Hu, Samuel Evetts, Richard Wade‐Martins, Kian Merchant‐Borna, Jeffrey J. Bazarian, Amrita K. Cheema, Mark Mapstone, Howard J. Federoff
Software Mentions: 3
Published: about 6 years ago

10.1186/s13568-021-01246-0

Identification of the molecular mechanisms underlying brisket disease in Holstein heifers via microbiota and metabolome analyses
Cited by: 1
Author(s): Kun Yao, Shuxiang Wang, Gaowa Naren, Shuai Huang, Shengli Li, Weijuan Shao
Software Mentions: 3
Published: over 3 years ago

10.3390/metabo9120308

From Samples to Insights into Metabolism: Uncovering Biologically Relevant Information in LC-HRMS Metabolomics Data
Cited by: 58
Author(s): Julijana Ivanišević, Elizabeth J. Want
Software Mentions: 3
Published: almost 5 years ago

10.3390/metabo11090627

Comparative Untargeted Metabolomic Profiling of Induced Mitochondrial Fusion in Pancreatic Cancer
Cited by: 0
Author(s): Nathalie Nguyen, Meifang Yu, Vinit Y. Reddy, Ariana Carolina Acevedo-Diaz, Enzo C. Mesarick, Joseph Abi Jaoude, Min Yuan, John M. Asara, Cullen M. Taniguchi
Software Mentions: 3
Published: about 3 years ago

10.1007/s11306-020-01717-8

MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data
Cited by: 14
Author(s): Joanna C. Wolthuis, Stefanía Magnúsdóttir, Mia L. Pras‐Raves, Maryam Moshiri, Judith Jans, Boudewijn M.T. Burgering, Saskia W.C. van Mil, Jeroen de Ridder
Software Mentions: 3
Published: about 4 years ago

10.3390/metabo10050205

Sedentariness and Urinary Metabolite Profile in Type 2 Diabetic Patients, a Cross-Sectional Study
Cited by: 7
Author(s): Elisa Benetti, Erica Liberto, Davide Bressanello, Valentina Bordano, Arianna Carolina Rosa, Gianluca Miglio, Jonida Haxhi, Giuseppe Pugliese, Stefano Balducci, Chiara Emilia Irma Cordero
Software Mentions: 3
Published: over 4 years ago

10.3390/metabo10010028

A Case Report of Switching from Specific Vendor-Based to R-Based Pipelines for Untargeted LC-MS Metabolomics
Cited by: 14
Author(s): Álvaro Fernández-Ochoa, Rosa Quirantes-Piné, Isabel Borrás-Linares, María de la Luz Cádiz-Gurrea, Marta E. Alarcón‐Riquelme, Carl Brunius, Antonio Segura‐Carretero
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2020.564579

Differential Gut Microbiota and Fecal Metabolites Related With the Clinical Subtypes of Myasthenia Gravis
Cited by: 17
Author(s): Xunmin Tan, Yu Huang, Tingjia Chai, Xiaoli Zhao, Yifan Li, Jing Wu, Hanping Zhang, Jiajia Duan, Weiwei Liang, Bangmin Yin, Ke Cheng, Gang Yu, Peng Zheng, Peng Xie
Software Mentions: 3
Published: about 4 years ago

10.3389/fchem.2021.662659

The Effects of Sampling and Storage Conditions on the Metabolite Profile of the Marine Sponge Geodia barretti
Cited by: 4
Author(s): Ida Erngren, E.F. Smit, Curt Pettersson, Paco Cárdenas, Mikael Hedeland
Software Mentions: 3
Published: over 3 years ago

10.1002/fsn3.1841

A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of Clausena lansium (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: about 4 years ago

10.3390/foods8120641

Temporal Check-All-That-Apply (TCATA) Reveals Matrix Interaction Effects on Flavor Perception in a Model Wine Matrix
Cited by: 10
Author(s): Andrew R. Poveromo, Helene Hopfer
Software Mentions: 3
Published: almost 5 years ago

10.1093/bioinformatics/btz067

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis
Cited by: 27
Author(s): Yang Yang, Timothy M. Walker, A Sarah Walker, Daniel J. Wilson, Timothy E. A. Peto, Derrick W. Crook, Farah E. Shamout, Irena Arandjelović, Iñaki Comas, Maha Farhat, Qian Gao, Vitali Sintchenko, Dick van Soolingen, Sarah Hoosdally, Ana Lúıza Gibertoni Cruz, Joshua A. Carter, Clara Grazian, Sarah G Earle, Samaneh Kouchaki, Yang Yang, Timothy M. Walker, Philip Fowler, David A. Clifton, Zamin Iqbal, Martin Hunt, E. Grace Smith, Priti Rathod, Lisa Jarrett, Daniela Matias, Daniela María Cirillo, Emanuele Borroni, Simone Battaglia, Arash Ghodousi, Andrea Spitaleri, Andrea Maurizio Cabibbe, Sabira Tahseen, Kayzad Nilgiriwala, Sanchi Shah, Camilla Rodrigues, Priti Kambli, Utkarsha Surve, R. S. Khot, Stefan Niemann, Thomas Köhl, Matthias Merker, Harald Hoffmann, Nikolay Molodtsov, Sara Plesnik, Nazir Ismail, Guy Thwaites, Thuong Nguyen Thuy Thuong, Nhung Hoang Ngoc, Vijay Srinivasan, D. J. Moore, David Jorge Coronel, Walter Solano, George F. Gao, Guangxue He, Yanlin Zhao, Aijing Ma, Chunfa Liu, Baoli Zhu, Ian F. Laurenson, Pauline Claxton, Anastasia Koch, Robert J. Wilkinson, Ajit Lalvani, James E. Posey, James Jennifer Gardy, Jim Werngren, Nicholas I. Paton, Ruwen Jou, Mei-Hua Wu, Wan-Hsuan Lin, Lucilaine Ferrazoli, Rosângela Siqueira de Oliveira, São Paulo, Tingting Zhu, David A. Clifton
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0231976

New insights in the allelopathic traits of different barley genotypes: Middle Eastern and Tibetan wild-relative accessions vs. cultivated modern barley
Cited by: 16
Author(s): Mauro Maver, Begoña Miras-Moreno, Luigi Lucini, Marco Trevisan, Youry Pii, Stefano Cesco, Tanja Mimmo
Software Mentions: 3
Published: over 4 years ago

10.3389/fcell.2021.648209

Melatonin Modulates Lipid Metabolism in Porcine Cumulus–Oocyte Complex via Its Receptors
Cited by: 4
Author(s): Tianqi Zhu, Shengyu Guan, Dongying Lv, Mengmeng Zhao, Laiqing Yan, Li Shi, Pengyun Ji, Lu Zhang, Guoshi Liu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.01494

Mutant Proteomics of Lung Adenocarcinomas Harboring Different EGFR Mutations
Cited by: 6
Author(s): Toshihide Nishimura, Ákos Végvári, Hiroki Nakamura, Harubumi Kato, Hisashi Saji
Software Mentions: 3
Published: about 4 years ago

10.1186/s40168-017-0246-x

Microbiome and metabolome modifying effects of several cardiovascular disease interventions in apo-E−/− mice
Cited by: 73
Author(s): Paul M. Ryan, Lis E. E. London, Trent C. Bjorndahl, Rupasri Mandal, Kiera Murphy, Gerald F. Fitzgerald, Fergus Shanahan, R. Paul Ross, David S. Wishart, Noel M. Caplice, Catherine Stanton
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-51489-y

NMR-based metabolic profiling and comparison of Japanese persimmon cultivars
Cited by: 9
Author(s): Shinsei Ryu, Tsuyoshi Muramatsu, Kazuo Furihata, Feifei Wei, Masanori Koda, Takuya Miyakawa, Masaru Tanokura
Software Mentions: 3
Published: about 5 years ago

10.3390/nu11020274

Metabolomic Salivary Signature of Pediatric Obesity Related Liver Disease and Metabolic Syndrome
Cited by: 35
Author(s): Jacopo Troisi, F. Belmonte, A. Bisogno, Luca Pierri, Angelo Colucci, Giovanni Scala, Pierpaolo Cavallo, Claudia Mandato, Antonella Di Nuzzi, Laura Di Michele, Anna Pia Delli Bovi, Salvatore Guercio Nuzio, Pietro Vajro
Software Mentions: 3
Published: almost 6 years ago

10.1155/2013/487158

Metabonomics Combined with UPLC-MS Chemical Profile for Discovery of Antidepressant Ingredients of a Traditional Chinese Medicines Formula, Chaihu-Shu-Gan-San
Cited by: 10
Author(s): Hongmei Jia, Zhiheng Su, Wei Long, Yuetao Liu, Xing Chang, Hongwu Zhang, Gang Ding, Yun Feng, Duan Cai, Zhong‐Mei Zou
Software Mentions: 2
Published: almost 12 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12918-018-0589-3

Dynamic elementary mode modelling of non-steady state flux data
Cited by: 7
Author(s): Abel Folch-Fortuny, Bas Teusink, Huub C. J. Hoefsloot, Age K. Smilde, Alberto Ferrer
Software Mentions: 2
Published: over 6 years ago

10.1111/1462-2920.14975

Quick microbial molecular phenotyping by differential shotgun proteomics
Cited by: 22
Author(s): Duarte Gouveia, Lucia Grenga, Olivier Pible, Jean Armengaud
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/8064557

GC-MS Based Metabolomics Reveals the Synergistic Mechanism of Gardeniae Fructus-Forsythiae Fructus Herb Pair in Lipopolysaccharide-Induced Acute Lung Injury Mouse Model
Cited by: 0
Author(s): Wenhui Wu, Hongyuan Lin, Ailing Yin, Cunsi Shen, Hongliang Zhou, Ma-Jie Wang, Huidong Yu, Haidan Wang, Zhihao Zhang, Wei Zhou
Software Mentions: 2
Published: over 3 years ago

10.1186/s12870-021-02841-w

Non-targeted and targeted metabolomics profiling of tea plants (Camellia sinensis) in response to its intercropping with Chinese chestnut
Cited by: 15
Author(s): Tian Wu, Rui Zou, Dian Pu, Lan Zeng-quan, Bingyu Zhao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12870-015-0672-5

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition
Cited by: 40
Author(s): Ilhame Diboun, Sweety Mathew, Maryam Al-Rayyashi, Mohamed A. Elrayess, María Fernanda Torres, Anna Halama, Michaël Méret, Robert P. Mohney, Edward D. Karoly, Joel A. Malek, Karsten Suhre
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12870-021-03047-w

Insights into the mechanism of the effects of rhizosphere microorganisms on the quality of authentic Angelica sinensis under different soil microenvironments
Cited by: 10
Author(s): Lei Zhu, Hui Yan, Guisheng Zhou, Chunhao Jiang, Pei Liu, Guang Yu, Sheng Guo, Qinan Wu, Jin‐Ao Duan
Software Mentions: 2
Published: over 3 years ago

10.1155/2014/528396

NMR-Based Metabonomic Studies on Stomach Heat and Cold Syndromes and Intervention Effects of the Corresponding Formulas
Cited by: 6
Author(s): Zhigeng Zou, Bin Han, Ming Gong, Shumei Wang, Shengwang Liang
Software Mentions: 2
Published: almost 11 years ago

10.1155/2019/3491852

Metabolomics Analysis in Serum from Patients with Colorectal Polyp and Colorectal Cancer by 1H-NMR Spectrometry
Cited by: 51
Author(s): Jinping Gu, Yaqing Xiao, Dan Shu, Xianrui Liang, Xiaomin Hu, Yuanyuan Xie, Donghai Lin, Hua Li
Software Mentions: 2
Published: over 5 years ago

10.3390/diagnostics10110936

Metabolomics of Interstitial Fluid, Plasma and Urine in Patients with Arterial Hypertension: New Insights into the Underlying Mechanisms
Cited by: 9
Author(s): Angelika Chachaj, Rafał Matkowski, Gerhard Gröbner, Andrzej Szuba, Ilona Dudka
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.7289

Temperature but not ocean acidification affects energy metabolism and enzyme activities in the blue mussel, Mytilus edulis
Cited by: 17
Author(s): Omera B. Matoo, Gisela Lannig, Christian Bock, Inna M. Sokolova
Software Mentions: 2
Published: over 3 years ago

10.1016/j.dib.2016.08.050

Multivariate data validation for investigating primary HCMV infection in pregnancy
Cited by: 19
Author(s): Luigi Barberini, Antonio Noto, Luca Saba, Francesco Palmas, Vassilios Fanos, Angelica Dessì, Maurizio Zavattoni, Claudia Fattuoni, Michele Mussap
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00216-012-6313-z

Near-infrared (NIR) hyperspectral imaging and multivariate image analysis to study growth characteristics and differences between species and strains of members of the genus Fusarium
Cited by: 45
Author(s): Paul J. Williams, Paul Geladi, T. J. Britz, Marena Manley
Software Mentions: 2
Published: over 12 years ago

10.1093/database/baz042

GenDiS database update with improved approach and features to recognize homologous sequences of protein domain superfamilies
Cited by: 0
Author(s): Meenakshi Iyer, K. S. Bhargava, Pavalam Murugavel, Ramanathan Sowdhamini
Software Mentions: 2
Published: almost 6 years ago

10.1155/2019/9293617

Dragonfly Algorithm and Its Applications in Applied Science Survey
Cited by: 82
Author(s): Chnoor M. Rahman, Tarik A. Rashid
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12870-021-03169-1

Metabolome and transcriptome analysis of flavor components and flavonoid biosynthesis in fig female flower tissues (Ficus carica L.) after bagging
Cited by: 15
Author(s): Ziran Wang, Miaoyu Song, Zhe Wang, Shangwu Chen, Huiqin Ma
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-019-0675-0

Structural analysis identifies an escape route from the adverse lipogenic effects of liver X receptor ligands
Cited by: 14
Author(s): Anna Y. Belorusova, Emma Evertsson, Daniel Hovdal, Jenny Sandmark, Emma Bratt, Ingela Maxvall, Ira G. Schulman, Peter Åkerblad, Eva-Lotte Lindstedt
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-12-253

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
Cited by: 618
Author(s): Kim‐Anh Lê Cao, Simon Boitard, Philippe Besse
Software Mentions: 2
Published: over 13 years ago

10.1186/s13054-018-2275-7

Plasma mitochondrial DNA and metabolomic alterations in severe critical illness
Cited by: 28
Author(s): Pär I. Johansson, Kiichi Nakahira, Angela Rogers, Michael J. McGeachie, Rebecca M. Baron, Laura E. Fredenburgh, John S. Harrington, Augustine M.K. Choi, Kenneth B. Christopher
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41433-021-01503-3

AI-based structure-function correlation in age-related macular degeneration
Cited by: 6
Author(s): Leon von der Emde, Maximilian Pfau, Frank G. Holz, Monika Fleckenstein, Karsten Kortuem, Pearse A. Keane, Daniel L. Rubin, Steffen Schmitz-Valckenberg
Software Mentions: 2
Published: over 3 years ago

10.1002/clc.23195

Dysbiotic gut microbes may contribute to hypertension by limiting vitamin D production
Cited by: 45
Author(s): Kun Zuo, Jing Li, Qiuhua Xu, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Qing Yin, Yudan Cao, Pan Wang, Yanwen Qin, Xiaoyan Liu, Jiu-Chang Zhong, Jun Cai, Kuibao Li, Xinchun Yang
Software Mentions: 2
Published: over 5 years ago

10.1007/s00216-020-02628-2

Discrimination of grass pollen of different species by FTIR spectroscopy of individual pollen grains
Cited by: 14
Author(s): Sabrina Diehn, Boris Zimmermann, Valeria Tafintseva, Murat Bağcıoğlu, Achim Köhler, Mikael Ohlson, Siri Fjellheim, Janina Kneipp
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2105-15-97

Multi-TGDR, a multi-class regularization method, identifies the metabolic profiles of hepatocellular carcinoma and cirrhosis infected with hepatitis B or hepatitis C virus
Cited by: 12
Author(s): Suyan Tian, Howard H. Chang, Chi Wang, Jing Jiang, Xiaomei Wang, Junqi Niu
Software Mentions: 2
Published: over 10 years ago

10.1002/chem.202002838

Principles and Applications of Miniaturized Near‐Infrared (NIR) Spectrometers
Cited by: 143
Author(s): Krzysztof B. Beć, Justyna Grabska, Christian W. Huck
Software Mentions: 2
Published: about 4 years ago

10.1016/j.celrep.2017.06.039

Microbial-Host Co-metabolites Are Prodromal Markers Predicting Phenotypic Heterogeneity in Behavior, Obesity, and Impaired Glucose Tolerance
Cited by: 72
Author(s): Marc Dumas, Alice Rothwell, Lesley Hoyles, Thomas Aranias, Julien Chilloux, Sophie Caldérari, Elisa M. Noll, Noémie Péan, Claire Boulangé, Christine Blancher, Richard H. Barton, Quan Gu, Jane Fearnside, Chloé Deshayes, Christophe Hue, James A. Scott, Jeremy K. Nicholson, Dominique Guyader
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-12-33

A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid identification of Bacillus spores and classification of Bacillus species
Cited by: 30
Author(s): Elon Correa, Royston Goodacre
Software Mentions: 2
Published: almost 14 years ago

10.1186/s40478-017-0495-8

Metabolomics reveals distinct, antibody-independent, molecular signatures of MS, AQP4-antibody and MOG-antibody disease
Cited by: 35
Author(s): Maciej Juryńczyk, Fay Probert, Tianrong Yeo, George Tackley, Claridge Tdw., Ana Cavey, Mark Woodhall, Siddharth Arora, Till Winkler, Eric Schiffer, Angela Vincent, Gabriele C. DeLuca, Nicola R. Sibson, Maria Isabel Leite, Patrick Waters, Daniel C. Anthony, Jacqueline Palace
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-11-339

Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques
Cited by: 54
Author(s): Maris Lapins, Jarl E. S. Wikberg
Software Mentions: 2
Published: over 14 years ago

10.1186/1752-153X-7-36

Exploring potential chemical markers by metabolomics method for studying the processing mechanism of traditional Chinese medicine using RPLC-Q-TOF/MS: a case study of Radix Aconiti
Cited by: 21
Author(s): Yubo Li, Yuming Wang, Li-Na Su, Lixin Li, Yanjun Zhang
Software Mentions: 2
Published: over 11 years ago

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