10.1038/s41598-020-72145-w

Inhibition of enteric methanogenesis in dairy cows induces changes in plasma metabolome highlighting metabolic shifts and potential markers of emission
Cited by: 17
Author(s): Bénédict Yanibada, Ulli Martin Hohenester, Mélanie Petera, Cécile Canlet, Stéphanie Durand, Fabien Jourdan, Julien Bernard, Cécile Martin, Maguy Eugène, Diego P. Morgavi, Hamid Boudra
Software Mentions: 3
Published: about 6 years ago

10.1111/jcmm.15837

Diagnostic potential of circulating cell‐free microRNAs for community‐acquired pneumonia and pneumonia‐related sepsis
Cited by: 19
Author(s): Stefanie Hermann, Florian Brandes, Benedikt Kirchner, Dominik Buschmann, Melanie Borrmann, Matthias Klein, Stefan Kotschote, Michael Bonin, Marlene Reithmair, Inès Kaufmann, Gustav Schelling, Michael W. Pfaffl
Software Mentions: 3
Published: about 6 years ago

10.1186/s12931-020-01364-6

Increased mortality of acute respiratory distress syndrome was associated with high levels of plasma phenylalanine
Cited by: 17
Author(s): Jing Xu, Tingting Pan, Xiaoling Qi, Ruoming Tan, Xiaoli Wang, Zhaojun Liu, Zheying Tao, Yi Zhang, Hong Chen, Yihui Wang, Jingjing Zhang, Jie Wang, Jialin Liu
Software Mentions: 3
Published: over 6 years ago

10.1002/jbm4.10478

Metabolic Alterations in Older Women With Low Bone Mineral Density Supplemented With <i>Lactobacillus reuteri</i>
Cited by: 14
Author(s): Peishun Li, Daniel Sundh, Boyang Ji, Dimitra Lappa, Lingqun Ye, Jens Nielsen, Mattias Lorentzon
Software Mentions: 3
Published: over 5 years ago

10.1186/s13054-021-03544-2

Urinary metabolites predict mortality or need for renal replacement therapy after combat injury
Cited by: 12
Author(s): Sarah Gisewhite, Ian J. Stewart, Greg J. Beilman, Elizabeth R. Lusczek
Software Mentions: 3
Published: over 5 years ago

10.1186/s12915-019-0693-x

Cold-induced lipid dynamics and transcriptional programs in white adipose tissue
Cited by: 70
Author(s): Zhonglin Xu, Wenjing You, Yanbing Zhou, Wentao Chen, Yizhen Wang, Tizhong Shan
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2016.00701

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium
Cited by: 102
Author(s): Joshua C McCann, Shaoyu Luan, F.C. Cardoso, Hooman Derakhshani, Ehsan Khafipour, Juan J. Loor
Software Mentions: 3
Published: over 10 years ago

10.3389/fimmu.2021.694344

Mechanism of the Immunomodulatory Effect of the Combination of Live Bifidobacterium, Lactobacillus, Enterococcus, and Bacillus on Immunocompromised Rats
Cited by: 15
Author(s): Longxian Lv, Deguang Mu, Yi‐Ling Du, Yan Ren, Huiyong Jiang
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo8030050

Potential Metabolomic Linkage in Blood between Parkinson’s Disease and Traumatic Brain Injury
Cited by: 14
Author(s): Massimo S. Fiandaca, Thomas Groß, Thomas M. Johnson, Michele T.M. Hu, Samuel Evetts, Richard Wade‐Martins, Kian Merchant‐Borna, Jeffrey J. Bazarian, Amrita K. Cheema, Mark Mapstone, Howard J. Federoff
Software Mentions: 3
Published: about 8 years ago

10.3390/metabo10050205

Sedentariness and Urinary Metabolite Profile in Type 2 Diabetic Patients, a Cross-Sectional Study
Cited by: 7
Author(s): Elisa Benetti, Erica Liberto, Davide Bressanello, Valentina Bordano, Arianna Carolina Rosa, Gianluca Miglio, Jonida Haxhi, Giuseppe Pugliese, Stefano Balducci, Chiara Emilia Irma Cordero
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-12254-1

Large-scale Metabolomic Analysis Reveals Potential Biomarkers for Early Stage Coronary Atherosclerosis
Cited by: 31
Author(s): Xueqin Gao, Chaofu Ke, Haixia Liu, Wei Liu, Kang Li, Bo Yu, Meng Sun
Software Mentions: 3
Published: about 9 years ago

10.3389/fimmu.2020.569727

Alterations of Gut Microbiome and Metabolite Profiling in Mice Infected by Schistosoma japonicum
Cited by: 27
Author(s): Yue Hu, Jiansong Chen, Yongping Xu, Hongli Zhou, Ping Huang, Yu-Bin Ma, Minzhao Gao, Shaoyun Cheng, Haiyun Zhou, Ziquan Lv
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.564579

Differential Gut Microbiota and Fecal Metabolites Related With the Clinical Subtypes of Myasthenia Gravis
Cited by: 17
Author(s): Xunmin Tan, Yu Huang, Tingjia Chai, Xiaoli Zhao, Yifan Li, Jing Wu, Hanping Zhang, Jiajia Duan, Weiwei Liang, Bangmin Yin, Ke Cheng, Gang Yu, Peng Zheng, Peng Xie
Software Mentions: 3
Published: about 6 years ago

10.1038/srep22525

Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease
Cited by: 103
Author(s): Qiang Feng, Zhipeng Liu, Shilong Zhong, Ruijun Li, Huihua Xia, Zhuye Jie, Bo Wen, Xiaomin Chen, Wei Yan, Yanqun Fan, Zhenyu Guo, Nan Meng, Jiyan Chen, Yu Xin, Zhiwei Zhang, Karsten Kristiansen, Jun Wang, Xun Xu, Kunlun He, Guanglei Li
Software Mentions: 3
Published: over 10 years ago

10.3389/fcell.2021.648209

Melatonin Modulates Lipid Metabolism in Porcine Cumulus–Oocyte Complex via Its Receptors
Cited by: 4
Author(s): Tianqi Zhu, Shengyu Guan, Dongying Lv, Mengmeng Zhao, Laiqing Yan, Li Shi, Pengyun Ji, Lu Zhang, Guoshi Liu
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-8-90

Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data
Cited by: 10
Author(s): Caroline Truntzer, Catherine Mercier, Jacques Estève, Christian Gautier, Pascal Roy
Software Mentions: 3
Published: over 19 years ago

10.1186/s40168-017-0246-x

Microbiome and metabolome modifying effects of several cardiovascular disease interventions in apo-E−/− mice
Cited by: 73
Author(s): Paul M. Ryan, Lis E. E. London, Trent C. Bjorndahl, Rupasri Mandal, Kiera Murphy, Gerald F. Fitzgerald, Fergus Shanahan, R. Paul Ross, David S. Wishart, Noel M. Caplice, Catherine Stanton
Software Mentions: 3
Published: over 9 years ago

10.3390/foods8120641

Temporal Check-All-That-Apply (TCATA) Reveals Matrix Interaction Effects on Flavor Perception in a Model Wine Matrix
Cited by: 10
Author(s): Andrew R. Poveromo, Helene Hopfer
Software Mentions: 3
Published: almost 7 years ago

10.1002/fsn3.1841

A comparative UPLC‐Q‐Orbitrap‐MS untargeted metabolomics investigation of different parts of <i>Clausena lansium</i> (Lour.) Skeels
Cited by: 15
Author(s): Ruiyi Fan, Cheng Peng, Xinxin Zhang, Diyang Qiu, Genlin Mao, Yusheng Lu, Jiwu Zeng
Software Mentions: 3
Published: almost 6 years ago

10.3390/molecules24142582

Comprehensive Chemical Profiling and Multidirectional Biological Investigation of Two Wild Anthemis Species (Anthemis tinctoria var. Pallida and A. cretica subsp. tenuiloba): Focus on Neuroprotective Effects
Cited by: 22
Author(s): Giustino Orlando, Gökhan Zengin, Claudio Ferrante, Maurizio Ronci, Lucia Recinella, İsmail Şenkardeş, Reneta Gevrenova, Dimitrina Zheleva‐Dimitrova, Annalisa Chiavaroli, Sheila Leone, Simonetta Cristina Di Simone, Luigi Brunetti, Marie Carene Nancy Picot-Allain, Mohamad Fawzi Mahomoodally, Kouadio Ibrahime Sinan, Luigi Menghini
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.7265

Integrating omics to characterize eco‐physiological adaptations: How moose diet and metabolism differ across biogeographic zones
Cited by: 3
Author(s): Christian Fohringer, Ilona Dudka, Robert L. Spitzer, Fredrik Stenbacka, Olena Rzhepishevska, Joris P. G. M. Cromsigt, Gerhard Gröbner, Göran Ericsson, Navinder J. Singh
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1896

Quantitative and qualitative shifts in defensive metabolites define chemical defense investment during leaf development in <i><scp>I</scp>nga</i>, a genus of tropical trees
Cited by: 44
Author(s): Natasha L. Wiggins, Dale L. Forrister, María‐José Endara, Phyllis D. Coley, Thomas A. Kursar
Software Mentions: 3
Published: almost 11 years ago

10.3389/fchem.2021.662659

The Effects of Sampling and Storage Conditions on the Metabolite Profile of the Marine Sponge Geodia barretti
Cited by: 4
Author(s): Ida Erngren, E.F. Smit, Curt Pettersson, Paco Cárdenas, Mikael Hedeland
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-19630-5

A procession of metabolic alterations accompanying muscle senescence in Manduca sexta
Cited by: 9
Author(s): Bernard Wone, Jason M. Kinchen, Elana R. Kaup
Software Mentions: 3
Published: over 8 years ago

10.1002/cam4.1107

Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis
Cited by: 34
Author(s): Mayank Saraswat, Sakari Joenväärä, Hanna Seppänen, Harri Mustonen, Caj Haglund, Risto Renkonen
Software Mentions: 3
Published: over 9 years ago

10.1186/2049-3002-2-18

Metabolic reprogramming induced by ketone bodies diminishes pancreatic cancer cachexia
Cited by: 179
Author(s): Surendra K. Shukla, Teklab Gebregiworgis, Vinee Purohit, Nina V. Chaika, Venugopal Gunda, Prakash Radhakrishnan, Kamiya Mehla, Iraklis I. Pipinos, Robert Powers, Fang Yu, Pankaj K. Singh
Software Mentions: 3
Published: about 12 years ago

10.1107/S1399004715005210

<i>In meso in situ</i> serial X-ray crystallography of soluble and membrane proteins
Cited by: 98
Author(s): Chia‐Ying Huang, V. Oliéric, Pikyee Ma, Ezequiel Panepucci, Kay Diederichs, Meitian Wang, Martin Caffrey
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0256388

Differential expression of urinary volatile organic compounds by sex, male reproductive status, and pairing status in the maned wolf (Chrysocyon brachyurus)
Cited by: 3
Author(s): Marieke K. Jones, Thomas B. Huff, Elizabeth W. Freeman, Nucharin Songsasen
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0159548

Metabolic Profiles of Obesity in American Indians: The Strong Heart Family Study
Cited by: 14
Author(s): Qi Zhao, Yun Zhu, Lyle G. Best, Jason G. Umans, Karan Uppal, Vi Linh Tran, Dean P. Jones, Elisa T. Lee, Barbara V. Howard, Jinying Zhao
Software Mentions: 3
Published: about 10 years ago

10.3390/plants9050592

From Genome to Field—Observation of the Multimodal Nematicidal and Plant Growth-Promoting Effects of Bacillus firmus I-1582 on Tomatoes Using Hyperspectral Remote Sensing
Cited by: 16
Author(s): Nik Susič, Uroš Žibrat, Lovro Sinkovič, Andrej Vončina, Jaka Razinger, M. Knapič, Aleš Sedlar, Saša Širca, Barbara Gerič Stare
Software Mentions: 3
Published: over 6 years ago

10.3389/fmolb.2015.00004

A data preprocessing strategy for metabolomics to reduce the mask effect in data analysis
Cited by: 70
Author(s): Jun Yang, Xinjie Zhao, Xin Lü, Xiaohui Lin, Guowang Xu
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.4859

Physical, but not chemical, antiherbivore defense expression is related to the clustered spatial distribution of tropical trees in an Amazonian forest
Cited by: 7
Author(s): Johanna Cobo-Quinche, María‐José Endara, Renato Valencia, Dolly Muñoz-Upegui, Rafael E. Cárdenas
Software Mentions: 3
Published: over 7 years ago

10.1038/s41397-021-00237-5

Gene expression signatures predict response to therapy with growth hormone
Cited by: 1
Author(s): Adam Stevens, Philip Murray, Chiara De Leonibus, Terence Garner, Ekaterina Koledova, Geoffrey Ambler, Klaus Kapelari, Gerhard Binder, Mohamad Maghnie, Stefano Zucchini, Elena Bashnina, Julia Skorodok, Diego Yeste, Alicia Belgorosky, Juan-Pedro Lopez Siguero, Régis Coutant, Eirik Vangsøy-Hansen, Lars Hagenäs, Jovanna Dahlgren, Cheri Deal, Pierre Chatelain, Peter Clayton
Software Mentions: 3
Published: over 5 years ago

10.3390/nu11020274

Metabolomic Salivary Signature of Pediatric Obesity Related Liver Disease and Metabolic Syndrome
Cited by: 35
Author(s): Jacopo Troisi, F. Belmonte, A. Bisogno, Luca Pierri, Angelo Colucci, Giovanni Scala, Pierpaolo Cavallo, Claudia Mandato, Antonella Di Nuzzi, Laura Di Michele, Anna Pia Delli Bovi, Salvatore Guercio Nuzio, Pietro Vajro
Software Mentions: 3
Published: over 7 years ago

10.3390/plants8090346

Early Detection of Sage (Salvia officinalis L.) Responses to Ozone Using Reflectance Spectroscopy
Cited by: 24
Author(s): Alessandra Marchica, Silvia Loré, Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Damiano Remorini
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-020-6522-3

Tuberomics: a molecular profiling for the adaption of edible fungi (Tuber magnatum Pico) to different natural environments
Cited by: 13
Author(s): Federico Vita, Beatrice Giuntoli, Edoardo Bertolini, Cosimo Taiti, Elettra Marone, Chiara D’Ambrosio, Emanuela Trovato, Danilo Sciarrone, Mariosimone Zoccali, Raffaella Balestrini, Andrea Scaloni, Luigi Mondello, Stefano Mancuso, Massimo Alessio, Amedeo Alpi
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0198156

Time course metabolome of Roux-en-Y gastric bypass confirms correlation between leptin, body weight and the microbiome
Cited by: 14
Author(s): Loqmane Seridi, Gregory C. Leo, G. Lynis Dohm, Walter J. Pories, James M. Lenhard
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj-cs.370

An integrated cuckoo search optimizer for single and multi-objective optimization problems
Cited by: 3
Author(s): Xiangbo Qi, Zhaohui Yuan, Yan Song
Software Mentions: 3
Published: over 5 years ago

10.3390/nu9050485

Urinary Metabolomics in Pediatric Obesity and NAFLD Identifies Metabolic Pathways/Metabolites Related to Dietary Habits and Gut-Liver Axis Perturbations
Cited by: 53
Author(s): Jacopo Troisi, Luca Pierri, Annamaria Landolfi, F. Marcianò, A. Bisogno, F. Belmonte, Carmen Palladino, Salvatore Guercio Nuzio, Pietro Campiglia, Pietro Vajro
Software Mentions: 3
Published: over 9 years ago

10.1042/BSR20202915

Lipid profiling of mouse intestinal organoids for studying <i>APC</i> mutations
Cited by: 3
Author(s): Zoë H. Jukes, Anne Freier, Maria Glymenaki, Richard C. D. Brown, Lee Parry, Elizabeth J. Want, Panagiotis A. Vorkas, Jia V. Li
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0036297

Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (PPAR) γ Activators and Pan-PPAR Partial Agonists
Cited by: 163
Author(s): M.V. Liberato, Alessandro S. Nascimento, Steven D. Ayers, Jean Z. Lin, Aleksandra Čvoro, Rodrigo L. Silveira, Leandro Martı́nez, Paulo C. T. Souza, Daniel Menezes Saidemberg, Tuo Deng, Angela Angelica Amato, Marie Togashi, Willa A. Hsueh, Kevin J. Phillips, Mário Sérgio Palma, Francisco de Assis Rocha Neves, Munir S. Skaf, Paul Webb, Igor Polikarpov
Software Mentions: 3
Published: over 14 years ago

10.3390/ijms20020401

Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic Profiles
Cited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms21041546

The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming
Cited by: 12
Author(s): Olga Andrzejczak, Jesper Foged Havelund, Weiqing Wang, Sergey I. Kovalchuk, Christina E Hagensen, Harald Hasler-Sheetal, Ole N. Jensen, Adelina Rogowska-Wrzesińska, Ian Max Møller, Kim H. Hebelstrup
Software Mentions: 3
Published: over 6 years ago

10.1099/jmm.0.028126-0

Microbial community and metabolomic comparison of irritable bowel syndrome faeces
Cited by: 190
Author(s): Kannan Ponnusamy, Jung Ran Choi, Jiyoung Kim, Sun-Young Lee, Choong Hwan Lee
Software Mentions: 3
Published: over 15 years ago

10.1111/j.1365-294X.2010.04986.x

Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates
Cited by: 83
Author(s): Pauline Charruau, Carlos Fernandes, Pablo Orozco‐terWengel, Joris Peters, Luke Hunter, Hooshang Ziaie, Alireza Jourabchian, Houman Jowkar, George B. Schaller, Stéphane Ostrowski, Paul Vercammen, Thierry Grange, Christian Schlötterer, Antoinette Kotzé, Eva-María Geigl, Chris Walzer, Pamela A. Burger
Software Mentions: 3
Published: over 15 years ago

10.1002/1878-0261.12642

Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors
Cited by: 7
Author(s): Xin Ku, Qiangling Sun, Lei Zhu, Zhenyu Gu, Yuchen Han, Ning Xu, Chen Meng, Xiaohua Yang, Wei Yan, Wentao Fang
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms161226133

A Combined Metabolomic and Proteomic Analysis of Gestational Diabetes Mellitus
Cited by: 24
Author(s): Joanna Hajduk, Agnieszka Klupczynska, Paweł Dereziński, Jan Matysiak, Piotr Kokot, Dorota Nowak, Marzena Gajęcka, Ewa Nowak‐Markwitz, Zenon J. Kokot
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12876-020-01281-4

Fecal microbiota composition is linked to the postoperative disease course in patients with Crohn’s disease
Cited by: 11
Author(s): Anna Strömbeck, Anders Lasson, Hans Strid, Johanna Sundin, Per-Ove Stotzer, Magnus Simrén, Maria K. Magnusson, Lena Öhman
Software Mentions: 3
Published: over 6 years ago

10.1186/s12862-014-0166-3

Species-specific ant brain manipulation by a specialized fungal parasite
Cited by: 96
Author(s): Charissa de Bekker, Lauren E. Quevillon, Philip B. Smith, Kimberly R. Fleming, Debashis Ghosh, Andrew D. Patterson, David Hughes
Software Mentions: 3
Published: about 12 years ago

10.1186/s40168-019-0738-y

Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale
Cited by: 16
Author(s): David Randall, Julius Kieswich, Jonathan R. Swann, Kieran McCafferty, Christoph Thiemermann, Michael A. Curtis, Lesley Hoyles, M. Yaqoob
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-57257-2

Postprandial Metabolism is Impaired in Overweight Normoglycemic Young Adults without Family History of Diabetes
Cited by: 20
Author(s): Ashok Kumar, Gopika Satheesh, G. Vijayakumar, Mahesh Chandran, Priya R. Prabhu, Leena Simon, V. Raman Kutty, Kartha Cc, Abdul Jaleel
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-021-01085-y

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics
Cited by: 14
Author(s): Patrick T. West, Samantha L. Peters, Matthew R. Olm, Feiqiao Brian Yu, Haley Gause, Yue Clare Lou, Brian Firek, Robyn Baker, Alexander D. Johnson, Michael J. Morowitz, Robert L. Hettich, Jillian F. Banfield
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-020-00976-w

High-dose saccharin supplementation does not induce gut microbiota changes or glucose intolerance in healthy humans and mice
Cited by: 32
Author(s): Joan Serrano, Kathleen R. Smith, Audra L. Crouch, Vandana Sharma, Fanchao Yi, Veronika Vargova, Traci E. LaMoia, Lydia M. Dupont, Vanida A. Serna, Fang Tang, Laisa Gomes-Dias, Joshua J. Blakeslee, Emmanuel Hatzakis, Scott N. Peterson, Matthew Anderson, Richard E. Pratley, George A. Kyriazis
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-57468-y

Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel Syndrome
Cited by: 33
Author(s): Johanna Sundin, Imran Aziz, Sofia Nordlander, Annikka Polster, Yue Hu, Luisa W. Hugerth, Alexandra Pennhag, Lars Engstrand, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22168751

Integrated Metabolomic and Transcriptomic Analysis Reveals the Flavonoid Regulatory Network by Eutrema EsMYB90
Cited by: 8
Author(s): Yuting Qi, Chuanshun Li, Chonghao Duan, Caihong Gu, Quan Zhang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-018-27964-3

Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics
Cited by: 14
Author(s): Emiro Buendía, Josefina Zakzuk, Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Luis Caraballo
Software Mentions: 3
Published: over 8 years ago

10.1007/s11306-020-01717-8

MetaboShiny: interactive analysis and metabolite annotation of mass spectrometry-based metabolomics data
Cited by: 14
Author(s): Joanna C. Wolthuis, Stefanía Magnúsdóttir, Mia L. Pras‐Raves, Maryam Moshiri, Judith Jans, Boudewijn M.T. Burgering, Saskia W.C. van Mil, Jeroen de Ridder
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-017-09431-7

Biogeography shaped the metabolome of the genus Espeletia: a phytochemical perspective on an Andean adaptive radiation
Cited by: 25
Author(s): Guillermo F. Padilla-González, Mauricio Diazgranados, Fernando Batista Da Costa
Software Mentions: 3
Published: about 9 years ago

10.1038/s41598-017-07015-z

Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreas
Cited by: 9
Author(s): Christoffer Nord, Maria Eriksson, Andrea Dicker, Anna Eriksson, Eivind Grong, Erwin Ilegems, Ronald Mårvik, Bård Kulseng, Per Olof Berggren, András Gorzsás, Ulf Ahlgren
Software Mentions: 3
Published: about 9 years ago

10.1186/s13568-021-01246-0

Identification of the molecular mechanisms underlying brisket disease in Holstein heifers via microbiota and metabolome analyses
Cited by: 1
Author(s): Kun Yao, Shuxiang Wang, Gaowa Naren, Shuai Huang, Shengli Li, Weijuan Shao
Software Mentions: 3
Published: over 5 years ago

10.3390/metabo9120308

From Samples to Insights into Metabolism: Uncovering Biologically Relevant Information in LC-HRMS Metabolomics Data
Cited by: 58
Author(s): Julijana Ivanišević, Elizabeth J. Want
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-31264-1

Differentiation and comparison of Wolfiporia cocos raw materials based on multi-spectral information fusion and chemometric methods
Cited by: 19
Author(s): Yan Li, Yuanzhong Wang
Software Mentions: 3
Published: about 8 years ago

10.3390/metabo11090627

Comparative Untargeted Metabolomic Profiling of Induced Mitochondrial Fusion in Pancreatic Cancer
Cited by: 0
Author(s): Nathalie Nguyen, Meifang Yu, Vinit Y. Reddy, Ariana Carolina Acevedo-Diaz, Enzo C. Mesarick, Joseph Abi Jaoude, Min Yuan, John M. Asara, Cullen M. Taniguchi
Software Mentions: 3
Published: about 5 years ago

10.3390/metabo10010028

A Case Report of Switching from Specific Vendor-Based to R-Based Pipelines for Untargeted LC-MS Metabolomics
Cited by: 14
Author(s): Álvaro Fernández-Ochoa, Rosa Quirantes-Piné, Isabel Borrás-Linares, María de la Luz Cádiz-Gurrea, Marta E. Alarcón‐Riquelme, Carl Brunius, Antonio Segura‐Carretero
Software Mentions: 3
Published: over 6 years ago

10.3389/fnut.2021.702085

Changes in Intestinal Flora Structure and Metabolites Are Associated With Myocardial Fibrosis in Patients With Persistent Atrial Fibrillation
Cited by: 4
Author(s): Langsha Liu, Juan Su, Rui Li, Fanyan Luo
Software Mentions: 3
Published: about 5 years ago

10.1093/bioinformatics/btz067

DeepAMR for predicting co-occurrent resistance of <i>Mycobacterium tuberculosis</i>
Cited by: 27
Author(s): Yang Yang, Timothy M. Walker, A Sarah Walker, Daniel J. Wilson, Timothy E. A. Peto, Derrick W. Crook, Farah E. Shamout, Irena Arandjelović, Iñaki Comas, Maha Farhat, Qian Gao, Vitali Sintchenko, Dick van Soolingen, Sarah Hoosdally, Ana Lúıza Gibertoni Cruz, Joshua A. Carter, Clara Grazian, Sarah G Earle, Samaneh Kouchaki, Yang Yang, Timothy M. Walker, Philip Fowler, David A. Clifton, Zamin Iqbal, Martin Hunt, E. Grace Smith, Priti Rathod, Lisa Jarrett, Daniela Matias, Daniela María Cirillo, Emanuele Borroni, Simone Battaglia, Arash Ghodousi, Andrea Spitaleri, Andrea Maurizio Cabibbe, Sabira Tahseen, Kayzad Nilgiriwala, Sanchi Shah, Camilla Rodrigues, Priti Kambli, Utkarsha Surve, R. S. Khot, Stefan Niemann, Thomas Köhl, Matthias Merker, Harald Hoffmann, Nikolay Molodtsov, Sara Plesnik, Nazir Ismail, Guy Thwaites, Thuong Nguyen Thuy Thuong, Nhung Hoang Ngoc, Vijay Srinivasan, D. J. Moore, David Jorge Coronel, Walter Solano, George F. Gao, Guangxue He, Yanlin Zhao, Aijing Ma, Chunfa Liu, Baoli Zhu, Ian F. Laurenson, Pauline Claxton, Anastasia Koch, Robert J. Wilkinson, Ajit Lalvani, James E. Posey, James Jennifer Gardy, Jim Werngren, Nicholas I. Paton, Ruwen Jou, Mei-Hua Wu, Wan-Hsuan Lin, Lucilaine Ferrazoli, Rosângela Siqueira de Oliveira, São Paulo, Tingting Zhu, David A. Clifton
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0231976

New insights in the allelopathic traits of different barley genotypes: Middle Eastern and Tibetan wild-relative accessions vs. cultivated modern barley
Cited by: 16
Author(s): Mauro Maver, Begoña Miras-Moreno, Luigi Lucini, Marco Trevisan, Youry Pii, Stefano Cesco, Tanja Mimmo
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.01494

Mutant Proteomics of Lung Adenocarcinomas Harboring Different EGFR Mutations
Cited by: 6
Author(s): Toshihide Nishimura, Ákos Végvári, Hiroki Nakamura, Harubumi Kato, Hisashi Saji
Software Mentions: 3
Published: about 6 years ago

10.1038/srep17141

Preterm gut microbiota and metabolome following discharge from intensive care
Cited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-019-51489-y

NMR-based metabolic profiling and comparison of Japanese persimmon cultivars
Cited by: 9
Author(s): Shinsei Ryu, Tsuyoshi Muramatsu, Kazuo Furihata, Feifei Wei, Masanori Koda, Takuya Miyakawa, Masaru Tanokura
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2018.01967

Butyrate Protects Mice Against Methionine–Choline-Deficient Diet-Induced Non-alcoholic Steatohepatitis by Improving Gut Barrier Function, Attenuating Inflammation and Reducing Endotoxin Levels
Cited by: 128
Author(s): Jianzhong Ye, Longxian Lv, Wenshuai Wu, Yating Li, Ding Shi, Daiqiong Fang, Feifei Guo, Huiyong Jiang, Yan Ren, Wanchun Ye
Software Mentions: 2
Published: about 8 years ago

10.1186/s12918-018-0589-3

Dynamic elementary mode modelling of non-steady state flux data
Cited by: 7
Author(s): Abel Folch-Fortuny, Bas Teusink, Huub C. J. Hoefsloot, Age K. Smilde, Alberto Ferrer
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.649091

Multi-Omics Analysis Reveals Disturbance of Nanosecond Pulsed Electric Field in the Serum Metabolic Spectrum and Gut Microbiota
Cited by: 1
Author(s): Yeping Dong, Jiahua Lu, Ting Wang, Zhiliang Huang, Xinhua Chen, Zhigang Ren, Hong Ling, Ang Li, Dezhi Yang, Haiyang Xie, Zengwen Wu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01550

Gut Microbiome and Metabolome Were Altered and Strongly Associated With Platelet Count in Adult Patients With Primary Immune Thrombocytopenia
Cited by: 11
Author(s): Xuewu Zhang, Silan Gu, Liangshun You, Yu Xu, De Zhou, Yunbo Chen, Yan Ren, Huiyong Jiang, Yating Li, Longxian Lv, W. Qian
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.526266

Enzymatic Browning in Wheat Kernels Produces Symptom of Black Point Caused by Bipolaris sorokiniana
Cited by: 5
Author(s): Qiaoyun Li, Kaige Xu, Siyu Wang, Mengyu Li, Yumei Jiang, Xiaolong Liang, Jishan Niu, Chenyang Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12870-021-02841-w

Non-targeted and targeted metabolomics profiling of tea plants (Camellia sinensis) in response to its intercropping with Chinese chestnut
Cited by: 15
Author(s): Tian Wu, Rui Zou, Dian Pu, Lan Zeng-quan, Bingyu Zhao
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-015-0672-5

Metabolomics of dates (Phoenix dactylifera) reveals a highly dynamic ripening process accounting for major variation in fruit composition
Cited by: 40
Author(s): Ilhame Diboun, Sweety Mathew, Maryam Al-Rayyashi, Mohamed A. Elrayess, María Fernanda Torres, Anna Halama, Michaël Méret, Robert P. Mohney, Edward D. Karoly, Joel A. Malek, Karsten Suhre
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12870-021-03047-w

Insights into the mechanism of the effects of rhizosphere microorganisms on the quality of authentic Angelica sinensis under different soil microenvironments
Cited by: 10
Author(s): Lei Zhu, Hui Yan, Guisheng Zhou, Chunhao Jiang, Pei Liu, Guang Yu, Sheng Guo, Qinan Wu, Jin‐Ao Duan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.02451

Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan
Cited by: 8
Author(s): Taha Soliman, James Davis Reimer, Sung‐Yin Yang, Alejandro Villar‐Briones, Michael C. Roy, Holger Jenke‐Kodama
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2016.00446

Mycobacterium avium Subspecies paratuberculosis Infection Modifies Gut Microbiota under Different Dietary Conditions in a Rabbit Model
Cited by: 31
Author(s): Rakel Arrazuria, Natalia Elguezabal, Ramón A. Juste, Hooman Derakhshani, Ehsan Khafipour
Software Mentions: 2
Published: over 10 years ago

10.3389/fmed.2014.00027

Patterns of Circulating Inflammatory Biomarkers in Older Persons with Varying Levels of Physical Performance: A Partial Least Squares-Discriminant Analysis Approach
Cited by: 34
Author(s): Emanuele Marzetti, Francesco Landi, Federico Marini, Matteo Cesari, Thomas W. Buford, Todd M. Manini, Graziano Onder, Marco Pahor, Roberto Bernabei, Christiaan Leeuwenburgh, Riccardo Calvani
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2016.02151

Human Catestatin Alters Gut Microbiota Composition in Mice
Cited by: 25
Author(s): Mohammad Fazle Rabbi, Peris M. Munyaka, Nour Eissa, Marie‐Hélène Metz‐Boutigue, Ehsan Khafipour, Jean–Eric Ghia
Software Mentions: 2
Published: over 9 years ago

10.1007/s00216-012-6313-z

Near-infrared (NIR) hyperspectral imaging and multivariate image analysis to study growth characteristics and differences between species and strains of members of the genus Fusarium
Cited by: 45
Author(s): Paul J. Williams, Paul Geladi, T. J. Britz, Marena Manley
Software Mentions: 2
Published: about 14 years ago

10.3389/fimmu.2021.671239

Patients With Common Variable Immunodeficiency (CVID) Show Higher Gut Bacterial Diversity and Levels of Low-Abundance Genes Than the Healthy Housemates
Cited by: 12
Author(s): Juraj Bosák, Matej Lexa, Kristýna Fiedorová, Darshak Gadara, Lenka Micenková, Zdeněk Spáčil, Jiří Litzman, Tomáš Freiberger, David Šmajs
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.675480

Alterations of Serum Metabolites and Fecal Microbiota Involved in Ewe Follicular Cyst
Cited by: 3
Author(s): Tao Feng, Hongxiang Ding, Jing Wang, Wei Xu, Yan Liu, Ákos Kenéz
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2021.652807

The Arachidonic Acid Metabolism Mechanism Based on UPLC-MS/MS Metabolomics in Recurrent Spontaneous Abortion Rats
Cited by: 8
Author(s): Meihe Li, Huiling Yang, Min-Hee Kang, Peng An, Xiumei Wu, Huimin Dang, Xin Xu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-021-03169-1

Metabolome and transcriptome analysis of flavor components and flavonoid biosynthesis in fig female flower tissues (Ficus carica L.) after bagging
Cited by: 15
Author(s): Ziran Wang, Miaoyu Song, Zhe Wang, Shangwu Chen, Huiqin Ma
Software Mentions: 2
Published: about 5 years ago

10.3389/fendo.2020.00215

Assessing Urinary Metabolomics in Giant Pandas Using Chromatography/Mass Spectrometry: Pregnancy-Related Changes in the Metabolome
Cited by: 11
Author(s): Maosheng Cao, Li ChunJin, Yuliang Liu, Kailai Cai, Lu Chen, Chenfeng Yuan, Zijiao Zhao, Boqi Zhang, Rong Hou, Xu Zhou
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-12-253

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems
Cited by: 618
Author(s): Kim‐Anh Lê Cao, Simon Boitard, Philippe Besse
Software Mentions: 2
Published: over 15 years ago

10.3389/fmicb.2019.00440

Comparative Metabonomic Investigations of Schistosoma japonicum From SCID Mice and BALB/c Mice: Clues to Developmental Abnormality of Schistosome in the Immunodeficient Host
Cited by: 12
Author(s): Rong Liu, Wenjun Cheng, Hongliang Tang, Qian Zhong, Zhenping Ming, Hui-Fen Dong
Software Mentions: 2
Published: over 7 years ago

10.3389/fmolb.2021.636599

Characterization of Weak Protein Domain Structure by Spin-Label Distance Distributions
Cited by: 8
Author(s): Irina Ritsch, Laura Esteban-Hofer, Elisabeth Lehmann, Leonidas Emmanouilidis, Maxim Yulikov, Frédéric H.‐T. Allain, Gunnar Jeschke
Software Mentions: 2
Published: over 5 years ago

10.1007/s00216-020-02628-2

Discrimination of grass pollen of different species by FTIR spectroscopy of individual pollen grains
Cited by: 14
Author(s): Sabrina Diehn, Boris Zimmermann, Valeria Tafintseva, Murat Bağcıoğlu, Achim Köhler, Mikael Ohlson, Siri Fjellheim, Janina Kneipp
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-15-97

Multi-TGDR, a multi-class regularization method, identifies the metabolic profiles of hepatocellular carcinoma and cirrhosis infected with hepatitis B or hepatitis C virus
Cited by: 12
Author(s): Suyan Tian, Howard H. Chang, Chi Wang, Jing Jiang, Xiaomei Wang, Junqi Niu
Software Mentions: 2
Published: over 12 years ago

10.3389/fnagi.2020.587989

Differential Profile of Systemic Extracellular Vesicles From Sporadic and Familial Alzheimer’s Disease Leads to Neuroglial and Endothelial Cell Degeneration
Cited by: 14
Author(s): Juan Villar-Vesga, Julián Henao‐Restrepo, Daniëlle C Voshart, David Aguillón, Andrés Villegas, Diana Castaño, Julián D. Arias-Londoño, Inge S. Zuhorn, Laís Ribovski, Lara Barazzuol, Gloria Patricia Cardona‐Gómez, Rafael Posada‐Duque
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcimb.2019.00410

Serum Lipidomics Analysis of Classical Swine Fever Virus Infection in Piglets and Emerging Role of Free Fatty Acids in Virus Replication in vitro
Cited by: 19
Author(s): Shuaipeng Ma, Qian Mao, Wenxian Chen, Mengpo Zhao, Keke Wu, Dehai Song, Xin Li, Erpeng Zhu, Songqing Fan, Lin Yi, Hongxing Ding, Mingqiu Zhao, Jinding Chen
Software Mentions: 2
Published: almost 7 years ago

10.3390/foods9081090

Rapid Analysis of Milk Using Low-Cost Pocket-Size NIR Spectrometers and Multivariate Analysis
Cited by: 32
Author(s): Jordi Riu, Giulia Gorla, Dib Chakif, Ricard Boqué, Barbara Giussani
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2105-12-33

A genetic algorithm-Bayesian network approach for the analysis of metabolomics and spectroscopic data: application to the rapid identification of Bacillus spores and classification of Bacillus species
Cited by: 30
Author(s): Elon Correa, Royston Goodacre
Software Mentions: 2
Published: over 15 years ago

10.3390/foods9060805

Wine Quality Drivers: A Case Study on South African Chenin Blanc and Pinotage Wines
Cited by: 8
Author(s): Jeanne Brand, Valeria Panzeri, Astrid Buica
Software Mentions: 2
Published: over 6 years ago

10.1186/s40478-017-0495-8

Metabolomics reveals distinct, antibody-independent, molecular signatures of MS, AQP4-antibody and MOG-antibody disease
Cited by: 35
Author(s): Maciej Juryńczyk, Fay Probert, Tianrong Yeo, George Tackley, Claridge Tdw., Ana Cavey, Mark Woodhall, Siddharth Arora, Till Winkler, Eric Schiffer, Angela Vincent, Gabriele C. DeLuca, Nicola R. Sibson, Maria Isabel Leite, Patrick Waters, Daniel C. Anthony, Jacqueline Palace
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2105-11-339

Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques
Cited by: 54
Author(s): Maris Lapins, Jarl E. S. Wikberg
Software Mentions: 2
Published: over 16 years ago