cran: COBRA | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0004556

RTA Promoter Demethylation and Histone Acetylation Regulation of Murine Gammaherpesvirus 68 Reactivation
Cited by: 19
Author(s): Zhangsheng Yang, Haidong Tang, Hai Huang, Hongyu Deng
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0045292

Patterns and Possible Roles of LINE-1 Methylation Changes in Smoke-Exposed Epithelia
Cited by: 51
Author(s): Siriporn Wangsri, Keskanya Subbalekha, Nakarin Kitkumthorn, Apiwat Mutirangura
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0111686

Computational Analysis of Reciprocal Association of Metabolism and Epigenetics in the Budding Yeast: A Genome-Scale Metabolic Model (GSMM) Approach
Cited by: 11
Author(s): Ali Salehzadeh‐Yazdi, Yazdan Asgari, Ali Akbar Saboury, Ali Masoudi‐Nejad
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0204284

Split inactivated COBRA vaccine elicits protective antibodies against H1N1 and H3N2 influenza viruses
Cited by: 20
Author(s): James D. Allen, Satyajit Ray, Ted M. Ross
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0030652

Metabolic Networks of Sodalis glossinidius: A Systems Biology Approach to Reductive Evolution
Cited by: 27
Author(s): Eugeni Belda, Francisco J. Silva, Juli Peretó, Andrés Moya
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0137976

Dissecting Leishmania infantum Energy Metabolism - A Systems Perspective
Cited by: 19
Author(s): Abhishek Subramanian, Jitesh Jhawar, Ram Rup Sarkar
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0072150

ReacKnock: Identifying Reaction Deletion Strategies for Microbial Strain Optimization Based on Genome-Scale Metabolic Network
Cited by: 35
Author(s): Zixiang Xu, Ping Zheng, Jibin Sun, Yanhe Ma
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0134412

Promoter Hypermethylation and Decreased Expression of Syncytin-1 in Pancreatic Adenocarcinomas
Cited by: 10
Author(s): Qin Lu, Jinping Li, Christopher Senkowski, Zuoqing Tang, Jianhao Wang, Tianhe Huang, Xue Wang, Karen Terry, Steven T. Brower, Wayne C. Glasgow, Haibin Chen, Shi‐Wen Jiang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0092583

Design of Optimally Constructed Metabolic Networks of Minimal Functionality
Cited by: 13
Author(s): David E. Ruckerbauer, Christian Jungreuthmayer, Jürgen Zanghellini
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0033024

Sequences Sufficient for Programming Imprinted Germline DNA Methylation Defined
Cited by: 13
Author(s): Yoon Jung Park, Herry Herman, Ying Gao, Anders M. Lindroth, Benjamin Hu, Patrick J. Murphy, James R. Putnam, Paul D. Soloway
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0034850

Differential Epigenetic Regulation of TOX Subfamily High Mobility Group Box Genes in Lung and Breast Cancers
Cited by: 52
Author(s): Mathewos Tessema, Christin M. Yingling, Marcie J. Grimes, Cynthia L. Thomas, Yushi Liu, Shuguang Leng, Nancy E. Joste, Steven A. Belinsky
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0201071

Investigation of epigenetic regulatory networks associated with autism spectrum disorder (ASD) by integrated global LINE-1 methylation and gene expression profiling analyses
Cited by: 32
Author(s): Chayanin Tangsuwansri, Thanit Saeliw, Surangrat Thongkorn, Weerasak Chonchaiya, Kanya Suphapeetiporn, Apiwat Mutirangura, Tewin Tencomnao, Valerie W. Hu, Tewarit Sarachana
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0010594

Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells
Cited by: 17
Author(s): Stefania Tommasi, Sang-in Kim, Xueyan Zhong, Xiwei Wu, Gerd P. Pfeifer, Ahmad Besaratinia
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0044904

Beeswax as Dental Filling on a Neolithic Human Tooth
Cited by: 67
Author(s): Federico Bernardini, Claudio Tuniz, Alfredo Coppa, Lucia Mancini, Diego Dreossi, Diane Eichert, Gianluca Turco, Matteo Biasotto, F. Terrasi, N. De Cesare, Quan Hua, Vladimir Levchenko
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0216336

A genome-scale metabolic network reconstruction of extremely halophilic bacterium Salinibacter ruber
Cited by: 6
Author(s): Maryam Bagheri, Sayed-Amir Marashi, Mohammad Ali Amoozegar
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0122670

Uniform Sampling of Steady States in Metabolic Networks: Heterogeneous Scales and Rounding
Cited by: 42
Author(s): Daniele De Martino, Matteo Mori, Valerio Parisi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0096994

Transition of LINE-1 DNA Methylation Status and Altered Expression in First and Third Trimester Placentas
Cited by: 21
Author(s): Zhiming He, Jinping Li, Yi L. Hwa, Brian C. Brost, Qun Fang, Shi‐Wen Jiang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0045635

Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
Cited by: 101
Author(s): Ines Thiele, Ronan M. T. Fleming, Richard Que, Aarash Bordbar, Dinh Diep, Bernhard Ø. Palsson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0120032

Higher Alu Methylation Levels in Catch-Up Growth in Twenty-Year-Old Offsprings
Cited by: 19
Author(s): Kittipan Rerkasem, Prakasit Rattanatanyong, Amaraporn Rerkasem, Antika Wongthanee, Kittipong Rungruengthanakit, Ampica Mangklabruks, Apiwat Mutirangura
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0012383

Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect
Cited by: 71
Author(s): Osbaldo Resendis‐Antonio, Alberto Checa, Sergio Encarnación
Software Mentions: 1
Published: about 14 years ago

10.18632/aging.103534

The mitochondrial derived peptide humanin is a regulator of lifespan and healthspan
Cited by: 53
Author(s): Kelvin Yen, Hemal H. Mehta, Su-Jeong Kim, Yanhe Lue, James Hoang, Noel Guerrero, Jenna Port, Qiuli Bi, Gerardo Navarrete, Sebastian Brandhorst, Kaitlyn N. Lewis, Junxiang Wan, Ronald S. Swerdloff, Julie A. Mattison, Rochelle Buffenstein, Carrie V. Breton, Christina Wang, Valter D. Longo, Gil Atzmon, Douglas C. Wallace, Nir Barzilai, Pinchas Cohen
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers7030834

Claudin11 Promoter Hypermethylation Is Frequent in Malignant Melanoma of the Skin, but Uncommon in Nevus Cell Nevi
Cited by: 19
Author(s): Sara K. Walesch, Antje Richter, Peter Helmbold, Reinhard Dammann
Software Mentions: 1
Published: over 9 years ago

10.3390/cancers8030026

Aberrant Promoter Methylation of the Tumour Suppressor RASSF10 and Its Growth Inhibitory Function in Breast Cancer
Cited by: 23
Author(s): Antje Richter, Sara K. Walesch, Reinhard Dammann
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers12102808

The Promise of Circulating Tumor DNA (ctDNA) in the Management of Early-Stage Colon Cancer: A Critical Review
Cited by: 29
Author(s): Sakti Chakrabarti, Hao Xie, Raúl Urrutia, Amit Mahipal
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers5041566

Aberrant Promoter Hypermethylation of RASSF Family Members in Merkel Cell Carcinoma
Cited by: 18
Author(s): Antje Richter, Tanja Haag, Sara K. Walesch, Peter Herrmann-Trost, Wolfgang Ch. Marsch, Heinz Kutzner, Peter Helmbold, Reinhard Dammann
Software Mentions: 1
Published: about 11 years ago

10.3390/cancers10100367

Molecular Scoring of Hepatocellular Carcinoma for Predicting Metastatic Recurrence and Requirements of Systemic Chemotherapy
Cited by: 22
Author(s): Naoshi Nishida, Takafumi Nishimura, Toshimi Kaido, Kosuke Minaga, Kentaro Yamao, Ken Kamata, Hiroshi Ida, Satoru Hagiwara, Yasunori Minami, Toshiharu Sakurai, Tomohiro Watanabe, Masatoshi Kudo
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers13153907

Distinct Molecular Mechanisms of Altered HLA Class II Expression in Malignant Melanoma
Cited by: 5
Author(s): Stefanie Meyer, Diana Handke, Anja Müeller, Katharina Biehl, Markus Kreuz, Jürgen Bukur, Ulrike Koehl, Maria-Filothei Lazaridou, Mark Berneburg, André Steven, Chiara Massa, Barbara Seliger
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-020-2325-3

Targeted overexpression of the long noncoding RNA ODSM can regulate osteoblast function in vitro and in vivo
Cited by: 23
Author(s): Yixuan Wang, Ke Wang, Lijun Zhang, Yingjun Tan, Zebing Hu, Lei Dang, Hua Zhou, Gaozhi Li, Han Wang, Shu Zhang, Fei Shi, Xinsheng Cao, Ge Zhang
Software Mentions: 1
Published: almost 5 years ago

Ecosyste.ms: Papers

Projects: cran: COBRA

Papers Mentioning COBRA 629