Ecosyste.ms: Papers

10.1186/s13059-019-1769-1

A systematic assessment of current genome-scale metabolic reconstruction tools
Cited by: 142
Author(s): Sebastián N. Mendoza, Brett G. Olivier, Douwe Molenaar, Bas Teusink
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-020-01991-8

Successful generation of epigenetic disease model mice by targeted demethylation of the epigenome
Cited by: 36
Author(s): Takuro Horii, Sumiyo Morita, Shinjiro Hino, Masashi Kimura, Yuko Hino, Hiroshi Kogo, Mitsuyoshi Nakao, Izuho Hatada
Software Mentions: 1
Published: over 4 years ago

10.1080/19490976.2021.1915673

Integration of constraint-based modeling with fecal metabolomics reveals large deleterious effects of <i>Fusobacterium</i> spp. on community butyrate production
Cited by: 19
Author(s): Johannes Hertel, Almut Heinken, Filippo Martinelli, Ines Thiele
Software Mentions: 1
Published: almost 4 years ago

10.1080/19490976.2021.1965698

Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models
Cited by: 2
Author(s): Juan P. Molina Ortiz, Dale D. McClure, Erin R. Shanahan, Fariba Dehghani, Andrew Holmes, Mark Read
Software Mentions: 1
Published: almost 4 years ago

10.1007/s13577-020-00379-x

Characterization and comparative DNA methylation profiling of four adipogenic genes in adipose-derived stem cells and dedifferentiated fat cells from aging subjects
Cited by: 6
Author(s): Kallapat Tansriratanawong, Isao Tabei, Hiroshi Ishikawa, Ayako Ohyama, Junko Toyomura, Soh Sato
Software Mentions: 1
Published: over 4 years ago

10.1177/1556984520981025

New Biparietal Bipolar Catheter Prototype for Hybrid Atrial Fibrillation Ablation
Cited by: 1
Author(s): Francesco Matteucci, Bart Maesen, Carlo de Asmundis, Gianmarco Parise, Linda Renata Micali, Gabriëlle J. M. Tuijthof, Peter Gerits, Kevin Vernooy, Jos G. Maessen, Mark La Meir
Software Mentions: 1
Published: almost 4 years ago

10.1128/JB.00147-19

Acetate Metabolism and the Inhibition of Bacterial Growth by Acetate
Cited by: 115
Author(s): Stéphane Pinhal, Delphine Ropers, Johannes Geiselmann, Hidde de Jong
Software Mentions: 1
Published: over 5 years ago

10.1128/JB.00872-16

Cooperative Metabolism in a Three-Partner Insect-Bacterial Symbiosis Revealed by Metabolic Modeling
Cited by: 52
Author(s): Nana Y. D. Ankrah, Jing Luan, Angela E. Douglas
Software Mentions: 1
Published: over 7 years ago

10.1186/1754-1611-7-14

Model-driven elucidation of the inherent capacity of Geobacter sulfurreducens for electricity generation
Cited by: 18
Author(s): Longfei Mao, W.S. Verwoerd
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.13348

Potential role of the methylation of VEGF gene promoter in response to hypoxia in oxygen‐induced retinopathy: beneficial effect of the absence of AQP4
Cited by: 31
Author(s): Francesco Pisani, Maurizio Cammalleri, Massimo Dal Monte, Filippo Locri, Maria Grazia Mola, Grazia Paola Nicchia, Antonio Frigeri, Paola Bagnoli, María Svelto
Software Mentions: 1
Published: about 7 years ago

10.1002/jcp.25428

Microbial Community Metabolic Modeling: A Community Data‐Driven Network Reconstruction
Cited by: 79
Author(s): Christopher S. Henry, Hans C. Bernstein, Pamela Weisenhorn, Ron Taylor, Joon‐Yong Lee, Jeremy Zucker, Hyun‐Seob Song
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/ery382

Kinetic modeling of the Calvin cycle identifies flux control and stable metabolomes in<i>Synechocystis</i>carbon fixation
Cited by: 21
Author(s): Markus Janasch, Johannes Asplund-Samuelsson, Ralf Steuer, Elton P. Hudson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1000935

The Epigenetic Landscape of Latent Kaposi Sarcoma-Associated Herpesvirus Genomes
Cited by: 226
Author(s): Thomas Guenther, Adam Grundhoff
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1007070

Continuous DNA replication is required for late gene transcription and maintenance of replication compartments in gammaherpesviruses
Cited by: 41
Author(s): Dajiang Li, Wenli Fu, Sankar Swaminathan
Software Mentions: 1
Published: over 6 years ago

10.1002/pros.23201

Regulation of miR-200c and miR-141 by Methylation in Prostate Cancer
Cited by: 55
Author(s): Seodhna M. Lynch, Karla O’Neill, Michael McKenna, Colum P. Walsh, Declan McKenna
Software Mentions: 1
Published: over 8 years ago

10.1093/rpd/ncab016

PATIENT-SPECIFIC DOSE ESTIMATES IN DYNAMIC COMPUTED TOMOGRAPHY MYOCARDIAL PERFUSION EXAMINATION
Cited by: 1
Author(s): Sundell Vm, Mika Kortesniemi, T. Siiskonen, A Kosunen, Stephan Rosendahl, L Büermann
Software Mentions: 1
Published: almost 4 years ago

10.5041/RMMJ.10121

The Surgical Treatment for Atrial Fibrillation: Ablation Technology and Surgical Approaches
Cited by: 6
Author(s): Linda Henry, Niv Ad
Software Mentions: 1
Published: over 11 years ago

10.1186/1477-7827-12-29

Maternal obesity and diabetes may cause DNA methylation alteration in the spermatozoa of offspring in mice
Cited by: 52
Author(s): Zhao‐Jia Ge, Qiu‐Xia Liang, Yi Hou, Zhiming Han, Heide Schatten, Qing‐Yuan Sun, Cuilian Zhang
Software Mentions: 1
Published: over 10 years ago

10.1186/1465-9921-13-86

Low intensity, long-term outpatient rehabilitation in COPD: a randomised controlled trial
Cited by: 28
Author(s): Hannes Baumann, Stefan Kluge, Katrin Rummel, Hans Klose, Jan K. Hennigs, Tibor Schmoller, Andreas Meyer
Software Mentions: 1
Published: almost 13 years ago

10.1186/1742-4690-2-64

Silencing of human T-cell leukemia virus type I gene transcription by epigenetic mechanisms
Cited by: 169
Author(s): Yuko Taniguchi, Kisato Nosaka, Jun-ichirou Yasunaga, Masako Maeda, Nancy Müeller, Akira Okayama, Masao Matsuoka
Software Mentions: 1
Published: about 19 years ago

10.1126/sciadv.abe8349

Alternative glycosylation controls endoplasmic reticulum dynamics and tubular extension in mammalian cells
Cited by: 7
Author(s): Despoina Kerselidou, Bushra Dohai, David R. Nelson, Sarah Daakour, Nicolas De Cock, Zahra Al Oula Hassoun, Dae-Kyum Kim, Julien Olivet, Diana Charles El Assal, Ashish Jaiswal, Amnah Alzahmi, Deeya Saha, Charlotte Pain, Filip Matthijssens, Pierre Lemaître, Michaël Herfs, Julien Chapuis, Bart Ghesquière, Didier Vertommen, Verena Kriechbaumer, Kèvin Knoops, Carmen López‐Iglesias, Marc van Zandvoort, Jean‐Charles Lambert, Julien Hanson, Christophe Desmet, Marc Thiry, Kyle J. Lauersen, Marc Vidal, Pieter Van Vlierberghe, Samuel Dequiedt, Kourosh Salehi‐Ashtiani, Jean-Claude Twizere
Software Mentions: 1
Published: over 3 years ago

10.1038/srep06899

ABCB4 is frequently epigenetically silenced in human cancers and inhibits tumor growth
Cited by: 22
Author(s): Steffen Kiehl, Stefanie Herkt, Antje Richter, L Fuhrmann, Nefertiti El-Nikhely, Werner Seeger, Rajkumar Savai, Reinhard Dammann
Software Mentions: 1
Published: about 10 years ago

10.1038/srep15147

Predictive analytics of environmental adaptability in multi-omic network models
Cited by: 43
Author(s): Claudio Angione, Píetro Lió
Software Mentions: 1
Published: about 9 years ago

10.1038/srep24438

Alternative promoters of Peg3 with maternal specificity
Cited by: 19
Author(s): Bambarendage P. U. Perera, Joomyeong Kim
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26932

High Production of 3-Hydroxypropionic Acid in Klebsiella pneumoniae by Systematic Optimization of Glycerol Metabolism
Cited by: 71
Author(s): Ying Liu, Xi Wang, Xizhen Ge, Pingfang Tian
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30652

Identification of uterine leiomyoma-specific marker genes based on DNA methylation and their clinical application
Cited by: 14
Author(s): Shun Sato, Ryo Maekawa, Yuriko Yamagata, Lifa Lee, Maki Okada, Kosuke Jozaki, Hiromi Asada, Hiroshi Tamura
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32378

Oxygen Displacement in Cuprates under Ionic Liquid Field-Effect Gating
Cited by: 22
Author(s): Guy Dubuis, Y. Yacoby, Hua Zhou, Xi He, A. T. Bollinger, Davor Pavuna, R. Pindak, I. Božović
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36008

Oocyte aging-induced Neuronatin (NNAT) hypermethylation affects oocyte quality by impairing glucose transport in porcine
Cited by: 13
Author(s): Yingying Gao, Li Chen, Tao Wang, Zheng‐Wen Nie, Xia Zhang, Yi‐Liang Miao
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36734

Principles of proteome allocation are revealed using proteomic data and genome-scale models
Cited by: 29
Author(s): Laurence T. Yang, James T. Yurkovich, Colton J. Lloyd, Ali Ebrahim, Michael A. Saunders, Bernhard Ø. Palsson
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-06817-5

YY1’s role in the Peg3 imprinted domain
Cited by: 7
Author(s): Hui He, An Ye, Bambarendage P. U. Perera, Joomyeong Kim
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07350-1

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition
Cited by: 7
Author(s): Neeraj Sinha, María Suárez-Diez, Evert M. van Schothorst, Jaap Keijer, Vítor A. P. Martins dos Santos, Guido Hooiveld
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-09773-2

Virtual histological assessment of the prenatal life history and age at death of the Upper Paleolithic fetus from Ostuni (Italy)
Cited by: 21
Author(s): Alessia Nava, Alfredo Coppa, Donato Coppola, Lucia Mancini, Diego Dreossi, Franco Zanini, Federico Bernardini, Claudio Tuniz, Luca Bondioli
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16026-9

Genome-scale modeling and transcriptome analysis of Leuconostoc mesenteroides unravel the redox governed metabolic states in obligate heterofermentative lactic acid bacteria
Cited by: 32
Author(s): Lokanand Koduru, Yujin Kim, Jeongsu Bang, Meiyappan Lakshmanan, Nam Soo Han, Dong-Yup Lee
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-31939-9

Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells
Cited by: 93
Author(s): Hilal Taymaz-Nikerel, Muhammed Erkan Karabekmez, Serpil Eraslan, Betül Kırdar
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-55699-2

Provitamin D3 modulation through prebiotics supplementation: simulation based assessment
Cited by: 12
Author(s): Sucheta Gokhale, Anirban Bhaduri
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-65258-9

Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling
Cited by: 1
Author(s): Inmaculada García‐Romero, Juan Nogales, Eduardo Dı́az, Eduardo Santero, Belén Floriano
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71674-8

Elucidating potential molecular signatures through host-microbe interactions for reactive arthritis and inflammatory bowel disease using combinatorial approach
Cited by: 8
Author(s): Ajay Verma, Shivani Sharda, Brijesh Rathi, Pallavi Somvanshi, Bimlesh Dhar Pandey
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-71907-w

Chloroplast development and genomes uncoupled signaling are independent of the RNA-directed DNA methylation pathway
Cited by: 4
Author(s): Liangsheng Wang, Dario Leister, Tatjana Kleine
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-76727-6

3D X-ray tomographic analysis reveals how coesite is preserved in Muong Nong-type tektites
Cited by: 4
Author(s): Matteo Masotta, Stefano Peres, Luigi Folco, Lucia Mancini, P. Rochette, B. P. Glass, Fabrizio Campanale, Nicolas Guéninchault, Francesco Radica, Sounthone Singsoupho, Enrique Navarro
Software Mentions: 1
Published: almost 4 years ago

10.1155/2014/178075

MicroRNA in Cervical Cancer: OncomiRs and Tumor Suppressor miRs in Diagnosis and Treatment
Cited by: 110
Author(s): Kouji Banno, Miho Iida, Megumi Yanokura, Iori Kisu, Takashi Iwata, Eiichiro Tominaga, Kyoko Tanaka, Daisuke Aoki
Software Mentions: 1
Published: almost 11 years ago

10.1155/2014/416289

Modeling the Differences in Biochemical Capabilities of<i>Pseudomonas</i>Species by Flux Balance Analysis: How Good Are Genome-Scale Metabolic Networks at Predicting the Differences?
Cited by: 9
Author(s): Parizad Babaei, Tahereh Ghasemi-Kahrizsangi, Sayed-Amir Marashi
Software Mentions: 1
Published: almost 11 years ago

10.3390/s111110624

Surface X-Ray Diffraction Results on the III-V Droplet Heteroepitaxy Growth Process for Quantum Dots: Recent Understanding and Open Questions
Cited by: 4
Author(s): Eyal Cohen, Naomi Elfassy, Guy Koplovitz, Shira Yochelis, S. Shusterman, Divine P. Kumah, Y. Yacoby, Roy Clarke, Yossi Paltiel
Software Mentions: 1
Published: about 13 years ago

10.3390/s120404934

Assessing Ambiguity of Context Data in Intelligent Environments: Towards a More Reliable Context Managing System
Cited by: 34
Author(s): Aitor Almeida, Diego López-de-Ipiña
Software Mentions: 1
Published: over 12 years ago

10.3390/s150614458

DEADS: Depth and Energy Aware Dominating Set Based Algorithm for Cooperative Routing along with Sink Mobility in Underwater WSNs
Cited by: 46
Author(s): A. Umar, Nadeem Javaid, Ashfaq Ahmad, Zahoor Ali Khan, Umar Qasim, Nabil Alrajeh, Amir Hayat
Software Mentions: 1
Published: over 9 years ago

10.1186/s13287-020-01747-y

Pulp stem cells with hepatocyte growth factor overexpression exhibit dual effects in rheumatoid arthritis
Cited by: 8
Author(s): Xiwen Dong, Fanxuan Kong, Chao Liu, Shiyun Dai, Yuning Zhang, Fengjun Xiao, Huan Zhang, Chu-Tse Wu, Hua Wang
Software Mentions: 1
Published: over 4 years ago

10.1007/s00464-019-06907-7

Update of Guidelines for laparoscopic treatment of ventral and incisional abdominal wall hernias (International Endohernia Society (IEHS))—Part A
Cited by: 168
Author(s): R. Bittner, Kevin Bain, Bansal Vk, Frederik Berrevoet, Juliane Bingener-Casey, D. Chen, J. Chen, Pradeep Chowbey, Ulrich Dietz, Andrew de Beaux, George Ferzli, René H. Fortelny, Henry Hoffmann, Morkos Iskander, Zhenhao Ji, L. N. Jørgensen, Rajesh Khullar, Philipp Kirchhoff, F. Köckerling, Jan F. Kukleta, K. LeBlanc, J. Li, Davide Lomanto, F Mayer, Vadim Meytes, Mahesh C. Misra, Salvador Morales-Conde, H. Niebuhr, David Radvinsky, Bruce Ramshaw, D Ranev, Wolfgang Reinpold, Anil Sharma, Rudolf Schrittwieser, Bernd Stechemesser, B. Sutedja, Jingdong Tang, Jeremy A. Warren, Dirk Weyhe, Armin Wiegering, G. Woeste, Qiyuan Yao
Software Mentions: 1
Published: over 5 years ago

10.1186/1745-6215-15-29

Cost and outcome of behavioural activation versus cognitive behaviour therapy for depression (COBRA): study protocol for a randomised controlled trial
Cited by: 25
Author(s): Shelley Rhodes, David Richards, David Ekers, Dean McMillan, Sarah Byford, Paul Farrand, Simon Gilbody, Steven D. Hollon, Willem Kuyken, Christopher R. Martell, Heather O’Mahen, Emer O’Neill, Nigel Reed, Rod S Taylor, Ed Watkins, Kim Wright
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13063-017-1834-6

A pragmatic randomised controlled trial assessing the non-inferiority of counselling for depression versus cognitive-behaviour therapy for patients in primary care meeting a diagnosis of moderate or severe depression (PRaCTICED): Study protocol for a randomised controlled trial
Cited by: 10
Author(s): David Saxon, Kate Ashley, Lindsey Bishop-Edwards, Janice Connell, Phillippa Harrison, Sally Ohlsen, Gillian E. Hardy, Stephen Kellett, Clara Mukuria, Toni Mank, Peter Bower, Mike Bradburn, John Brazier, Robert Elliott, Lynne Gabriel, Michael King, Stephen Pilling, S. C. Shaw, Glenn Waller, Michael Barkham
Software Mentions: 1
Published: over 7 years ago

10.1186/s13063-018-2559-x

Management of hypertension and multiple risk factors to enhance cardiovascular health in Singapore: The SingHypertension cluster randomized trial
Cited by: 9
Author(s): Tazeen H. Jafar, Ngiap Chuan Tan, John C. Allen, Eric A. Finkelstein, Goh P, Peter Kirm Seng Moey, Joanne Hui Min Quah, Siew Wai Hwang, Juliana Bahadin, Anandan Gerard Thiagarajah, Jason Chan, Gary Chun-Yun Kang, Agnes Koong
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-018-2576-9

Assessing the effectiveness of Enhanced Psychological Care for patients with depressive symptoms attending cardiac rehabilitation compared with treatment as usual (CADENCE): a pilot cluster randomised controlled trial
Cited by: 12
Author(s): Suzanne H Richards, Chris Dickens, Rob Anderson, David Richards, Rod S Taylor, Obioha C Ukoumunne, Katrina Turner, Manish Gandhi, Willem Kuyken, Andrew Gibson, Antoinette Davey, Fiona C Warren, Rachel Winder, John Campbell
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-020-05016-4

Statistical analysis plan for management of hypertension and multiple risk factors to enhance cardiovascular health in Singapore: the SingHypertension pragmatic cluster randomized controlled trial
Cited by: 3
Author(s): John C. Allen, Benjamin Halaand, Rupesh M. Shirore, Tazeen H. Jafar
Software Mentions: 1
Published: almost 4 years ago

10.1128/mBio.00406-19

Core Metabolism Shifts during Growth on Methanol versus Methane in the Methanotroph <i>Methylomicrobium buryatense</i> 5GB1
Cited by: 27
Author(s): Yanfen Fu, Lian He, Jennifer Reeve, David A. C. Beck, Mary E. Lidstrom
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/134768

Feasibility and Initial Performance of Simultaneous SPECT-CT Imaging Using a Commercial Multi-Modality Preclinical Imaging System
Cited by: 1
Author(s): Dustin Osborne, Derek Austin
Software Mentions: 1
Published: over 9 years ago

10.1155/2012/379807

⁶⁴Cu-NODAGA-c(RGDyK) Is a Promising New Angiogenesis PET Tracer: Correlation between Tumor Uptake and Integrin Expression in Human Neuroendocrine Tumor Xenografts
Cited by: 21
Author(s): Jytte Oxboel, Christina Schjoeth-Eskesen, Henrik H. El Ali, Jacob Madsen, Andreas Kjær
Software Mentions: 1
Published: about 12 years ago

10.1155/2011/356730

FDG-PET Quantification of Lung Inflammation with Image-Derived Blood Input Function in Mice
Cited by: 12
Author(s): Landon W. Locke, Mark B. Williams, Karen D. Fairchild, Min Zhong, Bijoy Kundu, Stuart S. Berr
Software Mentions: 1
Published: almost 13 years ago

10.3892/ijo.2013.2153

The paternally imprinted DLK1-GTL2 locus is differentially methylated in embryonal and alveolar rhabdomyosarcomas
Cited by: 14
Author(s): Gabriela Schneider, Mark J. Bowser, Dong Myung Shin, Frederic G. Barr, Mariusz Z. Ratajczak
Software Mentions: 1
Published: about 11 years ago

10.1007/s43039-021-00035-8

Conceptualising and measuring social media engagement: A systematic literature review
Cited by: 18
Author(s): Mariapina Trunfio, Simona Rossi
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph13090891

Public Health Impact and Economic Costs of Volkswagen’s Lack of Compliance with the United States’ Emission Standards
Cited by: 15
Author(s): Lifang Hou, Kai Zhang, Moira A. Luthin, Andrea A. Baccarelli
Software Mentions: 1
Published: about 8 years ago

10.3390/ijerph15040609

An Extended Chemical Plant Environmental Protection Game on Addressing Uncertainties of Human Adversaries
Cited by: 4
Author(s): Zhengqiu Zhu, Bin Chen, Sihang Qiu, Rongxiao Wang, Feiran Chen, Yiping Wang, Xiaogang Qiu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph16050720

Health Benefits from Upgrading Public Buses for Cleaner Air: A Case Study of Clark County, Nevada and the United States
Cited by: 8
Author(s): John Olajide Olawepo, L.-W. Antony Chen
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph16101857

A Metamodeling Framework for Quantifying Health Damages of Power Grid Expansion Plans
Cited by: 1
Author(s): Mark D. Rodgers, David W. Coit, Frank A. Felder, Annmarie G. Carlton
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph18041935

Air Pollution Health Risk Assessment (AP-HRA), Principles and Applications
Cited by: 35
Author(s): Tavoos Hassan Bhat, Guo Jiawen, Hooman Farzaneh
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18094516

Mediating Roles of Cognitive Complaints on Relationships between Insomnia, State Anxiety, and Presenteeism in Japanese Adult Workers
Cited by: 10
Author(s): Kuniyoshi Toyoshima, Takeshi Inoue, Akiyoshi Shimura, Yoshihiro Uchida, Jiro Masuya, Yota Fujimura, Shinji Higashi, Ichiro Kusumi
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18189647

Associations of Cognitive Complaints and Depressive Symptoms with Health-Related Quality of Life and Perceived Overall Health in Japanese Adult Volunteers
Cited by: 2
Author(s): Kuniyoshi Toyoshima, Takeshi Inoue, Toshiaki Baba, Jiro Masuya, Masahiko Ichiki, Yota Fujimura, Ichiro Kusumi
Software Mentions: 1
Published: about 3 years ago

10.1007/s10840-018-0466-4

Ortner’s syndrome after cryoballoon ablation
Cited by: 1
Author(s): Grzegorz Karkowski, Stanislas Kielczewski, Jacek Lelakowski, Marcin Kuniewicz
Software Mentions: 1
Published: about 6 years ago

10.3892/or.2013.2266

Aberrant methylation of LINE-1, SLIT2, MAL and IGFBP7 in non-small cell lung cancer
Cited by: 43
Author(s): Makoto Suzuki, Kenji Shiraishi, Ayami Eguchi, Koei Ikeda, Takeshi Mori, Kentaro Yoshimoto, Yasuomi Ohba, Tatsuya Yamada, Takaaki Ito, Yoshifumi Baba, Hideo Baba
Software Mentions: 1
Published: almost 12 years ago

10.7554/eLife.68174

Non-nucleoside reverse transcriptase inhibitor-based combination antiretroviral therapy is associated with lower cell-associated HIV RNA and DNA levels compared to protease inhibitor-based therapy
Cited by: 8
Author(s): Alexander Pasternak, Jelmer Vroom, Neeltje A. Kootstra, Ferdinand W. N. M. Wit, Marijn de Bruin, Davide De Francesco, Margreet Bakker, Caroline Sabin, Alan Winston, Jan M. Prins, Peter Reiss, Ben Berkhout, Fwnm Wit, Judith Schouten, Katherine W. Kooij, RA van Zoest, BC Elsenga, FR Janssen, Michiel Heidenrijk, W Zikkenheiner, Marc van der Valk, Thijs Booiman, AM Harskamp-Holwerda, Irma Maurer, MM Mangas Ruiz, AF Girigorie, Julien Villaudy, Esmay Frankin, T van der Kuyl, Peter Portegies, BA Schmand, Gert J. Geurtsen, JA ter Stege, Michelle Klein Twennaar, Cblm Majoie, Mwa Caan, Tanja Su, Kees Weijer, P.H.L.T. Bisschop, Andries Kalsbeek, M Wezel, Ieke Visser, HG Ruhé, Claudio Franceschi, Paolo Garagnani, Chiara Pirazzini, Miriam Capri, Fabio Dall’Olio, Mariella Chiricolo, Stefano Salvioli, Jan H.J. Hoeijmakers, Joris Pothof, Jan M. Prins, Marjolein Martens, Solange Moll, J Berkel, M Totté, Sergey Y. Kovalev, Magnus Gisslén, D Fuchs, Henrik Zetterberg, Jonathan Underwood, Leighton McDonald, Matthew A. Stott, Ken Legg, Andrew Lovell, Otto Erlwein, Nicki Doyle, Cherry I. Kingsley, DJ Sharp, Robert Leech, J. F. Cole, S. Zaheri, M.M.J. Hillebregt, Y. Ruijs, DP Benschop, David M. Burger, M de Graaff-Teulen, Giovanni Guaraldi, Alexander Bürkle, Thilo Sindlinger, María Moreno‐Villanueva, Amy Keller, Claude Libert, Sylviane Dewaele
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.01846

In vivo reprogramming of pancreatic acinar cells to three islet endocrine subtypes
Cited by: 116
Author(s): Weida Li, Mio Nakanishi, Adrian Zumsteg, Matthew A. Shear, Christopher V.E. Wright, Douglas A. Melton, Qiao Zhou
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.36018

Ongoing, rational calibration of reward-driven perceptual biases
Cited by: 42
Author(s): Yunshu Fan, Joshua I. Gold, Long Ding
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.39733

Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome
Cited by: 24
Author(s): David B Bernstein, Floyd E. Dewhirst, Daniel Segrè
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms140715029

DNA Methylation and Cancer Diagnosis
Cited by: 128
Author(s): Yannick Delpu, Pierre Cordelier, William C. Cho, Jérôme Torrisani
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms20020258

Human Germ Cell Tumors are Developmental Cancers: Impact of Epigenetics on Pathobiology and Clinic
Cited by: 90
Author(s): João Lobo, Ad J. M. Gillis, Carmen Jerónimo, Rui Henrique, Leendert H. J. Looijenga
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21072368

Analysis of Intracellular Magnesium and Mineral Depositions during Osteogenic Commitment of 3D Cultured Saos2 Cells
Cited by: 15
Author(s): Giovanna Picone, Concettina Cappadone, Alice Pasini, Joseph Lovecchio, Marilisa Cortesi, Giovanna Farruggia, Marco Lombardo, Alessandra Gianoncelli, Lucia Mancini, R.H. Menk, Sandro Donato, Emanuele Giordano, Emil Malucelli, Stefano Iotti
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22031470

GEM-Based Metabolic Profiling for Human Bone Osteosarcoma under Different Glucose and Glutamine Availability
Cited by: 4
Author(s): Ewelina Węglarz-Tomczak, Demi J. Rijlaarsdam, Jakub M. Tomczak, Stanley Brul
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22084247

DNA Methylation in Solid Tumors: Functions and Methods of Detection
Cited by: 35
Author(s): Andrea Martišová, Jitka Holčáková, Nasim Izadi, Ravery Sebuyoya, Roman Hrstka, Martin Bartošík
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22179418

Classification and Treatment of Diseases in the Age of Genome Medicine Based on Pathway Pathology
Cited by: 3
Author(s): Iver Petersen
Software Mentions: 1
Published: about 3 years ago

10.1155/2019/4914158

Regional Variation in Comorbid Prediabetes and Diabetes and Associated Factors among Hypertensive Individuals in Rural Bangladesh, Pakistan, and Sri Lanka
Cited by: 3
Author(s): Lixia Feng, Aliya Naheed, H Asita de Silva, Imtiaz Jehan, Rubhana Raqib, Tauhidul Islam, Natalie Luke, Anuradhani Kasturiratne, Hamida Farazdaq, Sahar Senan, Tazeen H. Jafar
Software Mentions: 1
Published: over 5 years ago

10.1155/2012/170172

Methylation-Mediated Molecular Dysregulation in Clinical Oral Malignancy
Cited by: 17
Author(s): Rebecca Towle, Cathie Garnis
Software Mentions: 1
Published: almost 13 years ago

10.1155/2018/9171536

DNA Methylation Status of the Interspersed Repetitive Sequences for LINE-1, Alu, HERV-E, and HERV-K in Trabeculectomy Specimens from Glaucoma Eyes
Cited by: 7
Author(s): Sunee Chansangpetch, Sasiprapa Prombhul, Visanee Tantisevi, Pimpayao Sodsai, Anita Manassakorn, Nattiya Hirankarn, Shan Lin
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.8620

Pattern of RECK CpG methylation as a potential marker for predicting breast cancer prognosis and drug-sensitivity
Cited by: 4
Author(s): Guangpu Shi, Yoko Yoshida, Kanako Yuki, T Nishimura, Yukiko Kawata, Masahiro Kawashima, Keiko Iwaisako, Kunio Yoshikawa, Junichi Kurebayashi, Masakazu Toi, Makoto Noda
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.14115

Cell-free methylation markers with diagnostic and prognostic potential in hepatocellular carcinoma
Cited by: 45
Author(s): Cheng‐Hsun Lu, Shih Ya Chen, Hui Peng, Pu Yeh Kan, Wan Chi Chang, Chia Jui Yen
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15499

Epigenetic silencing of miR-520c leads to induced S100A4 expression and its mediated colorectal cancer progression
Cited by: 21
Author(s): Giridhar Mudduluru, Katharina Ilm, Steffen Fuchs, Ulrike Stein
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.23480

The diagnostic role of DNA methylation in sporadic endometrial cancer: a systematic review and meta-analysis
Cited by: 7
Author(s): Yu Fan, Yu Wang, Shaozhi Fu, Linglin Yang, Sheng Lin, Qingze Fan, Qinglian Wen
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.24714

Elevated seminal plasma estradiol and epigenetic inactivation of <i>ESR1</i> and <i>ESR2</i> is associated with CP/CPPS
Cited by: 8
Author(s): Nils Nesheim, Stuart John Ellem, Temuujin Dansranjavin, Christina Hagenkötter, Elena Berg, Rupert Schambeck, H.‐C. Schuppe, Adrian Pilatz, Gail P. Risbridger, W. Weidner, Florian M. E. Wagenlehner, Undraga Schagdarsurengin
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.27355

IGFBP-2 acts as a tumour suppressor and plays a role in determining chemosensitivity in bladder cancer cells
Cited by: 8
Author(s): Zhen Tang, David Gillatt, Edward Rowe, Anthony Koupparis, Jeff M.P. Holly, Claire M Perks
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.27583

Aberrant epigenetic silencing of neuronatin is a frequent event in human osteosarcoma
Cited by: 5
Author(s): Haleema Saeed, Sayantani Sinha, Christine Mella, Jeffrey Kuerbitz, Monica L Cales, Mark A. Steele, Jennifer J. Stanke, Derek S. Damron, Fayez F. Safadi, Steven J. Kuerbitz
Software Mentions: 1
Published: over 4 years ago

10.1093/ofid/ofz198

Validation of a Novel Multivariate Method of Defining HIV-Associated Cognitive Impairment
Cited by: 9
Author(s): Jonathan Underwood, Davide De Francesco, James H. Cole, Matthan W.A. Caan, Rosan A van Zoest, Ben Schmand, David J. Sharp, Caroline Sabin, Peter Reiss, Alan Winston
Software Mentions: 1
Published: over 5 years ago

10.1186/1479-5876-7-90

Epigenetic control of the ubiquitin carboxyl terminal hydrolase 1 in renal cell carcinoma
Cited by: 25
Author(s): Barbara Seliger, Diana Handke, Elisabeth Schabel, Juergen Bukur, Rudolf Lichtenfels, Reinhard Dammann
Software Mentions: 1
Published: about 15 years ago

10.3390/cancers12030539

Enhanced CXCR4 Expression Associates with Increased Gene Body 5-Hydroxymethylcytosine Modification but not Decreased Promoter Methylation in Colorectal Cancer
Cited by: 9
Author(s): Alexei J. Stuckel, Wei Zhang, Xu Zhang, Shuai Zeng, Urszula Dougherty, Reba Mustafi, Qiong Zhang, Elsa Perreand, Tripti Khare, Trupti Joshi, Diana C. West-Szymanski, Marc Bissonnette, Sharad Khare
Software Mentions: 1
Published: over 4 years ago

10.1093/aobpla/plu026

Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile
Cited by: 9
Author(s): Meiyappan Lakshmanan, Bijayalaxmi Mohanty, Sung-Hun Lim, Sun-Hwa Ha, Dong-Yup Lee
Software Mentions: 1
Published: almost 11 years ago

10.1128/AEM.02931-19

Metabolic Exchange with Non-Alkane-Consuming Pseudomonas stutzeri SLG510A3-8 Improves <i>n</i> -Alkane Biodegradation by the Alkane Degrader <i>Dietzia</i> sp. Strain DQ12-45-1b
Cited by: 31
Author(s): Bing Hu, Yuan Fang, Shuang Geng, Liqun Wen, Mengdi Wu, Yong Nie, Yue‐Qin Tang, Xiao‐Lei Wu
Software Mentions: 1
Published: over 4 years ago

10.1007/s00253-017-8531-y

Metabolic characterization of a CHO cell size increase phase in fed-batch cultures
Cited by: 77
Author(s): Xiao Pan, Ciska Dalm, René H. Wijffels, Dirk E. Martens
Software Mentions: 1
Published: about 7 years ago

10.1155/2017/9763848

Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function
Cited by: 20
Author(s): ShengShee Thor, J.R. Peterson, Zaida Luthey‐Schulten
Software Mentions: 1
Published: almost 8 years ago

10.1155/2017/7481619

The Influence of Oblique Angle Forced Exercise in Surgically Destabilized Stifle Joints Is Synergistic with Bone, but Antagonistic with Cartilage in an Ovine Model of Osteoarthritis
Cited by: 4
Author(s): Rachel J. Hill, Holly M. Mason, Gavin Yeip, Samer Merchant, Aaron L. Olsen, Rusty Stott, Arnaud J. Van Wettere, Eadric Bressel, Jeffrey B. Mason
Software Mentions: 1
Published: over 7 years ago

10.1002/acr.23879

How Do Glucocorticoids Used in Rheumatic Disease Affect Body Weight? A Narrative Review of the Evidence
Cited by: 6
Author(s): Catharine Morgan, Ruth Costello, David Ray, William G Dixon
Software Mentions: 1
Published: over 4 years ago

10.1186/ar4361

Health-related quality of life and functional ability in patients with early arthritis during remission steered treatment: results of the IMPROVED study
Cited by: 20
Author(s): L. Heimans, K.V.C. Wevers-de Boer, Karel K.M. Koudijs, Karen Visser, Yvonne P M Goekoop-Ruiterman, J.B. Harbers, Gerda M Steup-Beekman, LR Lard, Bernard Grillet, Tom W J Huizinga, Cornelia F Allaart
Software Mentions: 1
Published: almost 12 years ago

10.1080/08916930802024202

ICF, an immunodeficiency syndrome: DNA methyltransferase 3B involvement, chromosome anomalies, and gene dysregulation
Cited by: 134
Author(s): Melanie Ehrlich, Cecilia G. Sánchez, Chunbo Shao, Rie Nishiyama, John H. Kehrl, Rork Kuick, Takeo Kubota, Samir Hanash
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12859-014-0409-8

DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis
Cited by: 106
Author(s): Jose A. Gomez, Kai Höffner, Paul I. Barton
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12859-018-2422-9

CiliateGEM: an open-project and a tool for predictions of ciliate metabolic variations and experimental condition design
Cited by: 1
Author(s): Alessio Mancini, Filmon Eyassu, Maxwell Conway, Annalisa Occhipinti, Píetro Lió, Claudio Angione, Sandra Pucciarelli
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-11-501

Predicting enzyme targets for cancer drugs by profiling human Metabolic reactions in NCI-60 cell lines
Cited by: 55
Author(s): Limin Liu, Xiaobo Zhou, Wai‐Ki Ching, Ping Wang
Software Mentions: 1
Published: about 14 years ago