cran: BioVenn | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-71144-1

Differential contribution of bone marrow-derived infiltrating monocytes and resident macrophages to persistent lung inflammation in chronic air pollution exposure
Cited by: 14
Author(s): Roopesh Singh Gangwar, Vinesh Vinayachandran, Rengasamy Palanivel, RV Paul Chan, Bong Soo Park, Rachel Diamond-Zaluski, Elaine Ann Ebreo Cara, Anthony Cha, Lopamudra Das, Courteney Asase, Andrei Maiseyeu, Jeffrey A. Deiuliis, Jixin Zhong, Wayne Mitzner, Shyam Biswal, Sanjay Rajagopalan
Software Mentions: 2
Published: about 4 years ago

10.1111/mpp.12854

Involvement of a PadR regulator PrhP on virulence of <i>Ralstonia solanacearum</i> by controlling detoxification of phenolic acids and type III secretion system
Cited by: 15
Author(s): Yong Zhang, Weiqi Zhang, Liangliang Han, Jing Li, Xiaojun Shi, Yasufumi Hikichi, Kouhei Ohnishi
Software Mentions: 2
Published: over 5 years ago

10.1074/mcp.RA117.000215

Quantitative Proteomics After Spinal Cord Injury (SCI) in a Regenerative and a Nonregenerative Stage in the Frog Xenopus laevis
Cited by: 16
Author(s): Dasfne Lee-Liu, Liangliang Sun, Norman J. Dovic̀hi, Juan Larraı́n
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-84169-x

Interrelationship of myo-inositol pathways with systemic metabolic conditions in two strains of high-performance laying hens during their productive life span
Cited by: 9
Author(s): Fernando Gonzalez-Uarquin, Vera Sommerfeld, M. Rodehutscord, Korinna Huber
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90309-0

Niche specificity and functional diversity of the bacterial communities associated with Ginkgo biloba and Panax quinquefolius
Cited by: 6
Author(s): Hanan R. Shehata, Subramanyam Ragupathy, Thomas Anderson Henry, Steven G. Newmaster
Software Mentions: 2
Published: over 3 years ago

10.3390/jpm11030160

Cannabis Use Induces Distinctive Proteomic Alterations in Olfactory Neuroepithelial Cells of Schizophrenia Patients
Cited by: 7
Author(s): Marta Barrera-Conde, Karina Ausín, Mercedes Lachén-Montes, Joaquín Fernández‐Irigoyen, L. Galindo, Aida Cuenca‐Royo, Cristina Fernández-Avilés, Vı́ctor Pérez, Rafael de la Torre, Enrique Santamaría, Patricia Robledo
Software Mentions: 2
Published: over 3 years ago

10.1074/mcp.RA120.002082

The Mouse Heart Mitochondria N Terminome Provides Insights into ClpXP-Mediated Proteolysis
Cited by: 16
Author(s): Eduard Hofsetz, Fatih Demir, Karolina Szczepanowska, Alexandra Kukat, Jayachandran N. Kizhakkedathu, Aleksandra Trifunović, Pitter F. Huesgen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12974-016-0570-2

Induction of the type I interferon response in neurological forms of Gaucher disease
Cited by: 52
Author(s): Einat B. Vitner, Tamar Farfel-Becker, Natália Santos Ferreira, Dena Leshkowitz, Piyush Sharma, Karl S. Lang, Anthony H. Futerman
Software Mentions: 2
Published: over 8 years ago

10.1128/mBio.00656-16

Degradation of the Plant Defense Signal Salicylic Acid Protects Ralstonia solanacearum from Toxicity and Enhances Virulence on Tobacco
Cited by: 57
Author(s): Tiffany M. Lowe‐Power, Jonathan M. Jacobs, Florent Ailloud, Brianna Fochs, Philippe Prior, Caitilyn Allen
Software Mentions: 2
Published: over 8 years ago

10.1186/s12974-020-01934-x

Mice defective in interferon signaling help distinguish between primary and secondary pathological pathways in a mouse model of neuronal forms of Gaucher disease
Cited by: 9
Author(s): Ayelet Vardi, Shifra Ben‐Dor, Soo Min Cho, Ulrich Kalinke, Julia Spanier, Anthony H. Futerman
Software Mentions: 2
Published: about 4 years ago

10.1128/mBio.02401-17

MYR1-Dependent Effectors Are the Major Drivers of a Host Cell’s Early Response to <i>Toxoplasma</i> , Including Counteracting MYR1-Independent Effects
Cited by: 41
Author(s): Adit Naor, Michael W. Panas, Nicole D. Marino, Michael Coffey, Christopher J. Tonkin, John C. Boothroyd
Software Mentions: 2
Published: over 6 years ago

10.3390/cells9051223

TNFα Rescues Dendritic Cell Development in Hematopoietic Stem and Progenitor Cells Lacking C/EBPα
Cited by: 3
Author(s): Subramanian Anirudh, Angelika Rosenberger, Elke Schwarzenberger, Carolin Schaefer, Herbert Strobl, Armin Zebisch, Heinz Sill, Albert Wölfler
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.00170-18

Broad-Spectrum Regulation of Nonreceptor Tyrosine Kinases by the Bacterial ADP-Ribosyltransferase EspJ
Cited by: 17
Author(s): Dominic J. Pollard, Cédric N. Berger, Ernest C. So, Lu Yu, Kate S. Hadavizadeh, Patricia A. Jennings, Edward W. Tate, Jyoti S. Choudhary, Gad Frankel
Software Mentions: 2
Published: over 6 years ago

10.1016/j.cell.2014.12.013

SOX17 Is a Critical Specifier of Human Primordial Germ Cell Fate
Cited by: 644
Author(s): Naoko Irie, Leehee Weinberger, Walfred W.C. Tang, Toshihiro Kobayashi, Sergey Viukov, Yair S. Manor, Sabine Dietmann, Jacob Hanna, M. Azim Surani
Software Mentions: 2
Published: almost 10 years ago

10.3390/cancers11020238

Cell-Free DNA Variant Sequencing Using CTC-Depleted Blood for Comprehensive Liquid Biopsy Testing in Metastatic Breast Cancer
Cited by: 24
Author(s): Corinna Keup, Markus Storbeck, Siegfried Hauch, Peter F. Hahn, Markus Sprenger-Haussels, Mitra Tewes, Paweł Mach, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms8010033

VelA and LaeA are Key Regulators of Epichloë festucae Transcriptomic Response during Symbiosis with Perennial Ryegrass
Cited by: 6
Author(s): Mostafa Rahnama, Paul Maclean, Damien J. Fleetwood, Richard D. Johnson
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.dib.2016.09.031

SWATH-MS proteome profiling data comparison of DJ-1, Parkin, and PINK1 knockout rat striatal mitochondria
Cited by: 12
Author(s): Kelly L. Stauch, Lance M. Villeneuve, Phillip R. Purnell, Sanjit Pandey, Chittibabu Guda, Howard S. Fox
Software Mentions: 2
Published: almost 8 years ago

10.1093/database/bav006

PathCards: multi-source consolidation of human biological pathways
Cited by: 190
Author(s): Frida Belinky, Noam Nativ, Gil Stelzer, Shahar Zimmerman, Tsippi Iny Stein, Marilyn Safran, Doron Lancet
Software Mentions: 2
Published: almost 10 years ago

10.1242/dev.143479

ChIP-seq analysis of genomic binding regions of five major transcription factors in mouse epiblast stem cells that highlights a central role for ZIC2
Cited by: 28
Author(s): Kazunari Matsuda, Tomoyuki Mikami, Shinya Oki, Hideaki Iida, Munazah Andrabi, Jeremy M. Boss, Katsushi Yamaguchi, Shuji Shigenobu, Hisato Kondoh
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0116726

Whole Cell Formaldehyde Cross-Linking Simplifies Purification of Mitochondrial Nucleoids and Associated Proteins Involved in Mitochondrial Gene Expression
Cited by: 31
Author(s): Nina Rajala, Fenna Hensen, Hans Wessels, Daniel Ives, Jolein Gloerich, Johannes N. Spelbrink
Software Mentions: 2
Published: almost 10 years ago

10.15252/emmm.201809736

Progerin accelerates atherosclerosis by inducing endoplasmic reticulum stress in vascular smooth muscle cells
Cited by: 74
Author(s): Magda R. Hamczyk, Ricardo Villa‐Bellosta, Vı́ctor Quesada, Pilar Gonzalo, Sandra Vidak, Rosa M. Nevado, María Jesús Andrés‐Manzano, Tom Misteli, Carlos López-Otı́n, Vicente Andrés
Software Mentions: 2
Published: over 5 years ago

10.1289/ehp.1510352

On the Utility of ToxCast™ and ToxPi as Methods for Identifying New Obesogens
Cited by: 71
Author(s): Amanda Janesick, Giorgio Dimastrogiovanni, Lenka Vanek, Christy Boulos, Raquel Chamorro-García, Weiyi Tang, Bruce Blumberg
Software Mentions: 2
Published: over 8 years ago

10.1017/S0950268821001369

SARS-CoV-2 outbreak in a synagogue community: longevity and strength of anti-SARS-CoV-2 IgG responses
Cited by: 0
Author(s): Yael Gozlan, Stephen Reingold, Ravit Koren, Osnat Halpern, Gili Regev‐Yochay, Carmit Cohen, Asaf Biber, Orit Picard, Ella Mendelson, Yaniv Lustig, Orna Mor
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnagi.2019.00195

Exploring the Mitochondrial Degradome by the TAILS Proteomics Approach in a Cellular Model of Parkinson’s Disease
Cited by: 7
Author(s): Marta Lualdi, Maurizio Ronci, Mara Zilocchi, Federica Corno, Emily Samuela Turilli, Mauro Sponchiado, Antonio Aceto, Tiziana Alberio, Mauro Fasano
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0248103

Changes in protein expression due to metformin treatment and hyperinsulinemia in a human endometrial cancer cell line
Cited by: 6
Author(s): Carsten Lange, Amanda Machado Weber, Ronny Schmidt, Christoph Schroeder, Thomas Strowitzki, Ariane Germeyer
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.571294

The Impact of Biomaterial Cell Contact on the Immunopeptidome
Cited by: 3
Author(s): Michael Ghosh, Hanna Hartmann, Meike Jakobi, Léo März, Leon Bichmann, Lena Katharina Freudenmann, Lena Mühlenbruch, Sören Segan, Hans‐Georg Rammensee, Nicole Schneiderhan‐Marra, Christopher Shipp, Stefan Stevanović, Thomas Joos
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0095554

Comparative Transcriptome Analysis of Short Fiber Mutants Ligon-Lintless 1 And 2 Reveals Common Mechanisms Pertinent to Fiber Elongation in Cotton (Gossypium hirsutum L.)
Cited by: 33
Author(s): Matthew K. Gilbert, Hee Jin Kim, Yuhong Tang, Marina Naoumkina, David D. Fang
Software Mentions: 2
Published: over 10 years ago

10.3390/microorganisms9010062

Cyanobacterial Mats in Calcite-Precipitating Serpentinite-Hosted Alkaline Springs of the Voltri Massif, Italy
Cited by: 9
Author(s): Aysha Kamran, Kathrin Sauter, Andreas Reimer, Theresa Wacker, Joachim Reitner, Michael Hoppert
Software Mentions: 2
Published: almost 4 years ago

10.3389/fcell.2020.565261

MIR143 Inhibits Steroidogenesis and Induces Apoptosis Repressed by H3K27me3 in Granulosa Cells
Cited by: 6
Author(s): Yuyi Zhong, Liying Li, Zitao Chen, Shuqi Diao, Yingting He, Zhe Zhang, Hao Zhang, Xiaolong Yuan, Jiaqi Li
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0199240

Influence of factor XIII activity on post-operative transfusion in congenital cardiac surgery—A retrospective analysis
Cited by: 3
Author(s): Fabian Fahlbusch, Thomas Heinlein, Manfred Rauh, Sven Dittrich, Robert Cesnjevar, Julia Moosmann, Jennifer Nadal, Matthias Schmid, Frank Muench, Michael Schroth, Wolfgang Rascher, Hans-Georg Topf
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2016.00058

Gene Expression Profiling of Muscle Stem Cells Identifies Novel Regulators of Postnatal Myogenesis
Cited by: 42
Author(s): Sonia Alonso-Martín, Anne Rochat, Despoina Mademtzoglou, Jessica Morais, Aurélien de Reyniès, Frédéric Auradé, Ted Hung-Tse Chang, Peter S. Zammit, Frédéric Relaix
Software Mentions: 2
Published: over 8 years ago

10.3389/fcimb.2019.00430

Demonstration and Characterization of Cyst-Like Structures in the Life Cycle of Trichomonas vaginalis
Cited by: 18
Author(s): Divya Beri, Priya Yadav, HR Nandini Devi, Chinmaya Narayana Kotimoole, Darshak Gadara, Utpal Tatu
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00698-19

Genome-Scale Investigation of the Metabolic Determinants Generating Bacterial Fastidious Growth
Cited by: 13
Author(s): Léo Gerlin, Ludovic Cottret, Sophie Cesbron, Géraldine Taghouti, Marie‐Agnès Jacques, Stéphane Genin, Caroline Baroukh
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-016-0727-2

Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne
Cited by: 51
Author(s): Sariful Islam, David D. Fang, Gregory N. Thyssen, Christopher D. Delhom, Yongliang Liu, Hee Jin Kim
Software Mentions: 2
Published: almost 9 years ago

10.1093/hmg/ddu049

Association of polyalanine and polyglutamine coiled coils mediates expansion disease-related protein aggregation and dysfunction
Cited by: 58
Author(s): Ilaria Pelassa, Davide Corà, Federico Cesano, Francisco J. Monje, Pier Giorgio Montarolo, Ferdinando Fiumara
Software Mentions: 2
Published: almost 11 years ago

10.3389/fgene.2014.00001

Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast
Cited by: 119
Author(s): Daniel A. Medina, Antonio Jordán-Pla, Gonzalo Millán-Zambrano, Sebastián Chávez, Mordechai Choder, José E. Pérez-Ortín
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-9-488

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
Cited by: 1,249
Author(s): Tim Hulsen, Jacob de Vlieg, Wynand Alkema
Software Mentions: 2
Published: almost 17 years ago

10.3389/fimmu.2020.01809

Polarized Trout Epithelial Cells Regulate Transepithelial Electrical Resistance, Gene Expression, and the Phosphoproteome in Response to Viral Infection
Cited by: 8
Author(s): Shankar Chandra Mandal, Manfred Weidmann, Amaya Albalat, Emma Carrick, Bernat Morro, Simon J Mackenzie
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2021.705974

Immunopeptidomics-Guided Warehouse Design for Peptide-Based Immunotherapy in Chronic Lymphocytic Leukemia
Cited by: 18
Author(s): Annika Nelde, Yacine Maringer, Tatjana Bilich, Helmut R. Salih, Malte Roerden, Jonas S. Heitmann, Ana Marcu, Jens Bauer, Marian C. Neidert, Claudio Denzlinger, Gerald Illerhaus, Walter Aulitzky, Hans‐Georg Rammensee, Juliane S. Walz
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2019.00632

Mapping of Dynamic Transcriptome Changes Associated With Silica-Triggered Autoimmune Pathogenesis in the Lupus-Prone NZBWF1 Mouse
Cited by: 15
Author(s): Melissa A. Bates, Abby D. Benninghoff, Kristen N. Gilley, Andrij Holian, Jack R. Harkema, James J. Pestka
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.658372

ARTEMIS: A Novel Mass-Spec Platform for HLA-Restricted Self and Disease-Associated Peptide Discovery
Cited by: 5
Author(s): Kathryn Finton, Mi-Youn Brusniak, Lisa Jones, Chenwei Lin, Andrew Fioré-Gartland, Chance Brock, Philip R. Gafken, Roland K. Strong
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0100504

Detection of Expressional Changes Induced by Intrauterine Growth Restriction in the Developing Rat Mammary Gland via Exploratory Pathways Analysis
Cited by: 16
Author(s): Lea Beinder, Nina Faehrmann, Rainer Wachtveitl, Ilona Winterfeld, Andrea Hartner, Carlos Menendez-Castro, Manfred Rauh, Matthias Ruebner, Hanna Huebner, Stephanie C. Noegel, H. G. Doerr, Wolfgang Rascher, Fabian Fahlbusch
Software Mentions: 2
Published: over 10 years ago

10.18632/oncotarget.17592

Secretome analysis of breast cancer-associated adipose tissue to identify paracrine regulators of breast cancer growth
Cited by: 12
Author(s): Lore Lapeire, An Hendrix, Evelyne Lecoutere, Mieke Van Bockstal, Jo Vandesompele, Dawn Maynard, Geert Braems, Rudy Van den Broecke, Cathérine Müller, Marc Bracke, Véronique Cocquyt, Hannelore Denys, Olivier De Wever
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-015-1895-4

Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)
Cited by: 58
Author(s): Nicholas A. Mueth, Sowmya Ramachandran, Scot H. Hulbert
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2164-14-758

Metabolite and transcriptome analysis during fasting suggest a role for the p53-Ddit4 axis in major metabolic tissues
Cited by: 64
Author(s): Michael Schupp, Fang Chen, Erika R. Briggs, Shilpa Rao, Helmut Josef Pelzmann, Ariane Pessentheiner, Juliane Gertrude Bogner‐Strauß, Mitchell A. Lazar, Don A. Baldwin, Andreas Prokesch
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-015-1711-1

Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes
Cited by: 9
Author(s): Clarissa Boschiero, Almas Gheyas, Hannah K Ralph, Lél Eöry, Bob Paton, Richard Kuo, Janet E. Fulton, Rudolf Preisinger, Pete Kaiser, David W. Burt
Software Mentions: 2
Published: over 9 years ago

Projects: cran: BioVenn

Papers Mentioning BioVenn 247