Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Benchmarking

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Benchmarking

Benchmark and Frontier Analysis Using DEA and SFA
17 versions
Latest release: about 2 years ago
8 dependent packages
1,930 downloads last month

Papers Mentioning Benchmarking 22

10.1186/s12916-016-0653-z
The potential to expand antiretroviral therapy by improving health facility efficiency: evidence from Kenya, Uganda, and Zambia
Cited by: 20
Author(s): Laura Di Giorgio, Mark Moses, Nancy Fullman, Alexandra Wollum, Ruben Conner, Jane Achan, Tom Achoki, Kelsey Bannon, Roy Burstein, Emily Dansereau, Brendan DeCenso, Kristen Delwiche, Herbert C. Duber, Emmanuela Gakidou, Anne Gasasira, Annie Haakenstad, Michelle Hanlon, Gloria Ikilezi, Caroline Kisia, Aubrey J. Levine, Mashekwa Maboshe, Felix Masiye, Samuel H. Masters, Chrispin Mphuka, Pamela Njuguna, Thomas Odeny, Emelda A. Okiro, D. Allen Roberts, Christopher J L Murray, Abraham D. Flaxman
Software Mentions: 4
Published: over 8 years ago
10.1093/gigascience/giy168
New<i>de novo</i>assembly of the Atlantic bottlenose dolphin (<i>Tursiops truncatus</i>) improves genome completeness and provides haplotype phasing
Cited by: 5
Author(s): Karine A. Martinez-Viaud, Cindy Lawley, Milmer Martinez Vergara, Gil Ben-Zvi, Tammy Biniashvili, Kobi Baruch, Judy St. Leger, Jennie Le, Aparna Natarajan, Marlem Rivera, Marbie Guillergan, Erich B. Jaeger, Brian Steffy, Aleksey V. Zimin
Software Mentions: 3
Published: almost 6 years ago
10.1093/bioinformatics/btab048
<i>De novo</i> genome assembly of <i>Solanum sitiens</i> reveals structural variation associated with drought and salinity tolerance
Cited by: 7
Author(s): Corentin Molitor, Tomasz J. Kurowski, Pedro Machado Almeida, Pramod Eerolla, Daniel Spindlow, Sandeep Kashyap, Bijendra Singh, H. C. Prasanna, Andrew J. Thompson, Fady Mohareb
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12864-017-3852-x
Coping with living in the soil: the genome of the parthenogenetic springtail Folsomia candida
Cited by: 97
Author(s): Anna Faddeeva-Vakhrusheva, Ken Kraaijeveld, Martijn F.L. Derks, Seyed Yahya Anvar, Valeria Agamennone, Wouter Suring, Andries A. Kampfraath, Jacintha Ellers, Giang Le Ngoc, Cornelis A.M. van Gestel, Janine Mariën, Sandra Smit, Nico M. van Straalen, Dick Roelofs
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0147261
Efficiency of Health Care Production in Low-Resource Settings: A Monte-Carlo Simulation to Compare the Performance of Data Envelopment Analysis, Stochastic Distance Functions, and an Ensemble Model
Cited by: 12
Author(s): Laura Di Giorgio, Abraham D. Flaxman, Mark Moses, Nancy Fullman, Michelle Hanlon, Ruben Conner, Alexandra Wollum, Christopher J L Murray
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0251668
De novo transcriptome assembly of the green alga Ankistrodesmus falcatus
Cited by: 6
Author(s): Rachel A. Schomaker, Jeffry L. Dudycha
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pbio.3000954
Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression
Cited by: 61
Author(s): Dan Vanderpool, Bùi Quang Minh, Robert Lanfear, Daniel Hughes, Shwetha C. Murali, R. Alan Harris, Muthuswamy Raveendran, Donna M. Muzny, Mark S. Hibbins, R. Williamson, Richard A. Gibbs, Kim C. Worley, Jeffrey Rogers, Matthew W. Hahn
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0220187
Pheromone gland transcriptome of the pink bollworm moth, Pectinophora gossypiella: Comparison between a laboratory and field population
Cited by: 7
Author(s): Xiaoyi Dou, Sijun Liu, Victoria Soroker, Ally R. Harari, Russell A. Jurenka
Software Mentions: 2
Published: over 5 years ago
10.1534/g3.116.030486
Head Transcriptomes of Two Closely Related Species of Fruit Flies of the<i>Anastrepha fraterculus</i>Group Reveals Divergent Genes in Species with Extensive Gene Flow
Cited by: 14
Author(s): Victor Borges Rezende, Carlos Congrains, André Luís A. Lima, Emeline Boni Campanini, Aline Minali Nakamura, Janaína Lima de Oliveira, Samira Chahad‐Ehlers, Iderval Sobrinho, Reinaldo Alves de Brito
Software Mentions: 2
Published: about 8 years ago
10.1186/s13071-016-1846-1
Genomic resources for a unique, low-virulence Babesia taxon from China
Cited by: 17
Author(s): Guiquan Guan, Pasi K. Korhonen, Neil D. Young, Anson V. Koehler, Tao Wang, Youquan Li, Zhijie Liu, Jianxun Luo, Hong Yin, Robin B. Gasser
Software Mentions: 2
Published: about 8 years ago
10.1186/s13561-019-0248-4
Quality of life in chronic conditions using patient-reported measures and biomarkers: a DEA analysis in type 1 diabetes
Cited by: 4
Author(s): Sixten Borg, Ulf G. Gerdtham, Katarina Eeg‐Olofsson, Bo Palaszewski, Soffia Guðbjörnsdóttir
Software Mentions: 2
Published: about 5 years ago
10.1186/s43008-019-0023-5
Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa
Cited by: 16
Author(s): Feifei Liu, ShuaiFei Chen, M. A. Ferreira, Runlei Chang, Mohammad Sayari, Aquillah M. Kanzi, Brenda D. Wingfield, Michael J. Wingfield, David Pizarro, Ana Crespo, Pradeep K. Divakar, Z. Wilhelm de Beer, Tuan A. Duong
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-018-4768-9
The developmental transcriptomes of two sea biscuit species with differing larval types
Cited by: 4
Author(s): Anne Frances Armstrong, Richard K. Grosberg
Software Mentions: 1
Published: over 6 years ago
10.1186/s13104-019-4400-3
The genome of the Black Bengal goat (Capra hircus)
Cited by: 8
Author(s): Amam Zonaed Siddiki, Abdul Baten, Masum Billah, Mohammad Atique Ul Alam, Kazi Shefaul Mulk Shawrob, Sourav Saha, Mitu Chowdhury, Atif Rahman, M. J. Stear, Gous Miah, Mahadia Kumkum, Md. Sirazul Islam, Mohammad Alamgir Hossain, A. K. M. Moniruzzaman Mollah, M.K.I. Khan
Software Mentions: 1
Published: over 5 years ago
10.1186/s13104-021-05532-9
Transcriptome of Aquilaria malaccensis containing agarwood formed naturally and induced artificially
Cited by: 1
Author(s): Farah Adibah Abdul Kadir, Kamalrul Azlan Azizan, Roohaida Othman
Software Mentions: 1
Published: over 3 years ago
10.1128/MRA.00400-19
Draft Genome Sequence of Filamentous Fungus Phialemoniopsis curvata , Isolated from Diesel Fuel
Cited by: 1
Author(s): Vanessa A. Varaljay, Wanda J. Lyon, Audra L. Crouch, Carrie A. Drake, Jeffrey M. Hollomon, Lloyd J. Nadeau, Heather S. Nunn, Bradley S. Stevenson, Caitlin L. Bojanowski, Wendy J. Crookes‐Goodson
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00904-19
High-Quality Draft Genome Sequence of the Causal Agent of the Current Panama Disease Epidemic
Cited by: 12
Author(s): Rachel Warmington, William T. Kay, Aaron R. Jeffries, Paul O’Neill, Audrey Farbos, Karen Moore, Daniel P. Bebber, David J. Studholme
Software Mentions: 1
Published: about 5 years ago
10.1038/s42003-021-02472-9
AQPX-cluster aquaporins and aquaglyceroporins are asymmetrically distributed in trypanosomes
Cited by: 4
Author(s): Fiorella Carla Tesán, Ramiro Lorenzo, Karina Alleva, Ana Romina Fox
Software Mentions: 1
Published: over 3 years ago
10.3389/fmed.2020.00457
The World Health Organization Global Benchmarking Tool an Instrument to Strengthen Medical Products Regulation and Promote Universal Health Coverage
Cited by: 36
Author(s): Alireza Khadem Broojerdi, Hiiti Sillo, Razieh Ostad Ali Dehaghi, Monika A. Ward, Mohamed Refaat, Jane Parry
Software Mentions: 1
Published: over 4 years ago
10.3390/genes9120598
The Genome of the North American Brown Bear or Grizzly: Ursus arctos ssp. horribilis
Cited by: 35
Author(s): Gregory A. Taylor, Heather Kirk, Lauren Coombe, Shaun D. Jackman, Justin Chu, Kane Tse, Dean Cheng, Eric Chuah, Pawan Pandoh, Rebecca Carlsen, Yongjun Zhao, Andrew J. Mungall, Richard A. Moore, İnanç Birol, Maria Franke, Marco A. Marra, Christopher J. Dutton, Steven J.M. Jones
Software Mentions: 1
Published: almost 6 years ago
10.1093/gigascience/giz152
A draft genome sequence of the elusive giant squid, Architeuthis dux
Cited by: 32
Author(s): Rute R. da Fonseca, Alvarina Couto, André M. Machado, Broňa Brejová, Caroline B. Albertin, Filipe Silva, Paul Geeleher, Tobias Baril, Alex Hayward, Alexandre Campos, Ângela Maria Ribeiro, Iñigo Barrio-Hernandez, Henk-Jan T. Hoving, Ricardo Tafur-Jimenez, Chong Chu, Bárbara Frazão, Bent Petersen, Fernando Peñaloza, Francesco Musacchia, Graham Alexander, Hugo Osório, Inger E. Winkelmann, Oleg Simakov, Simon Rasmussen, Mehboob‐ur Rahman, Davide Pisani, Jakob Vinther, Erich D. Jarvis, Guojie Zhang, Jan M. Strugnell, L. Filipe C. Castro, Olivier Fédrigo, Mateus Patrício, Qiye Li, Sara Rocha, Agostinho Antunes, Yufeng Wu, Bin Ma, Remo Sanges, Tomáš Vinař, Blagoy Blagoev, Thomas Sicheritz-Pontén, Rasmus Nielsen, M. Thomas P. Gilbert
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12859-020-03926-3
Set-theory based benchmarking of three different variant callers for targeted sequencing
Cited by: 0
Author(s): José Arturo Molina-Mora, Mariela Solano-Vargas
Software Mentions: 1
Published: almost 4 years ago