Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: BRETIGEA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/BRETIGEA

Brain Cell Type Specific Gene Expression Analysis
2 versions
Latest release: over 3 years ago
207 downloads last month

Papers Mentioning BRETIGEA 7

A HML6 endogenous retrovirus on chromosome 3 is upregulated in amyotrophic lateral sclerosis motor cortex
Cited by: 10
Author(s): Ashley Jones, Alfredo Iacoangeli, Brett N. Adey, Harry Bowles, Aleksey Shatunov, Claire Troakes, Jeremy A. Garson, Adele L. McCormick, Ammar Al‐Chalabi
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-020-79740-x

Combinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer’s Disease
Cited by: 12
Author(s): Travis Johnson, Shunian Xiang, Tianhan Dong, Zhi Huang, Michael Cheng, Tianfu Wang, Kai Yang, Dong Ni, Kun Huang, Jie Zhang
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-27293-5

Brain Cell Type Specific Gene Expression and Co-expression Network Architectures
Cited by: 283
Author(s): Andrew McKenzie, Minghui Wang, Mads E. Hauberg, John F. Fullard, Alexey Kozlenkov, Alexandra B. Keenan, Yasmin L. Hurd, Stella Dracheva, Patrizia Casaccia, Panos Roussos, Bin Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13293-020-00288-6

Sex-specific and shared expression profiles of vulnerability and resilience to trauma in brain and blood
Cited by: 11
Author(s): Grace S Kim, Monica Uddin
Software Mentions: 3
Published: over 4 years ago

10.1186/s12883-021-02407-1

Cell type-specific potential pathogenic genes and functional pathways in Alzheimer’s Disease
Cited by: 15
Author(s): Xiaolan Wang, Lianjian Li
Software Mentions: 2
Published: almost 3 years ago

10.1186/s13024-020-00392-6

Deciphering cellular transcriptional alterations in Alzheimer’s disease brains
Cited by: 38
Author(s): Xue Wang, Mariet Allen, Shaoyu Li, Zachary Quicksall, Tulsi Patel, Troy Carnwath, Joseph S. Reddy, Minerva M. Carrasquillo, Sarah Lincoln, Thuy Nguyen, Kimberly G. Malphrus, Dennis W. Dickson, Julia E. Crook, Yan W. Asmann, Nilüfer Ertekin-Taner
Software Mentions: 2
Published: about 4 years ago

10.7554/eLife.54822

Mouse brain transcriptome responses to inhaled nanoparticulate matter differed by sex and APOE in Nrf2-Nfkb interactions
Cited by: 18
Author(s): Amin Haghani, Mafalda Cacciottolo, Kevin R. Doty, Carla D’Agostino, Max Thorwald, Nikoo Safi, Morgan E. Levine, Constantinos Sioutas, Terrence Town, Henry Jay Forman, Todd E. Morgan, Caleb E. Finch
Software Mentions: 2
Published: about 4 years ago