Ecosyste.ms: Papers

10.1534/g3.114.010298

Parametric and Nonparametric Statistical Methods for Genomic Selection of Traits with Additive and Epistatic Genetic Architectures
Cited by: 132
Author(s): Réka Howard, Alicia L. Carriquiry, William D. Beavis
Software Mentions: 8
Published: over 10 years ago

10.1186/1471-2164-15-1048

Genomic selection accuracies within and between environments and small breeding groups in white spruce
Cited by: 86
Author(s): Jean Beaulieu, Trevor Doerksen, John Mackay, André Rainville, Jean Bousquet
Software Mentions: 5
Published: over 10 years ago

10.1038/srep19244

Evaluation of the 2b-RAD method for genomic selection in scallop breeding
Cited by: 57
Author(s): Jun Dou, Xue Li, Qiang Fu, Wenqian Jiao, Yangping Li, Tianqi Li, Yangfan Wang, Xiaoli Hu, Shi Wang, Zhenmin Bao
Software Mentions: 5
Published: over 8 years ago

10.1186/s12870-017-1059-6

Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids
Cited by: 86
Author(s): Beiping Tan, Dário Grattapaglia, Gustavo Salgado Martins, Karina Zamprogno Ferreira, Björn Sundberg, Pär K. Ingvarsson
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0173368

Breeding Jatropha curcas by genomic selection: A pilot assessment of the accuracy of predictive models
Cited by: 15
Author(s): Leonardo de Azevedo Peixoto, Bruno Galvêas Laviola, Alexandre Alonso Alves, Tatiana Barbosa Rosado, Leonardo Lopes Bhering
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1004982

Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
Cited by: 378
Author(s): Jennifer Spindel, Hamida Begum, Deniz Akdemir, P. S. Virk, B. C. Y. Collard, Edilberto D. Redoña, G. N. Atlin, Jean‐Luc Jannink, Susan R. McCouch
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0040964

Prediction of Expected Years of Life Using Whole-Genome Markers
Cited by: 16
Author(s): Gustavo de los Campos, Yann C. Klimentidis, Ana I. Vázquez, David B. Allison
Software Mentions: 3
Published: about 12 years ago

10.1534/g3.115.019745

Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations
Cited by: 43
Author(s): Saravanan Thavamanikumar, Rudy Dolferus, Bala R. Thumma
Software Mentions: 3
Published: almost 9 years ago

10.1186/1297-9686-44-29

Parallel Markov chain Monte Carlo - bridging the gap to high-performance Bayesian computation in animal breeding and genetics
Cited by: 20
Author(s): Xiaolin Wu, Chuanyu Sun, Timothy Beissinger, Guilherme J. M. Rosa, K.A. Weigel, Natalia de Leon Gatti, Daniel Gianola
Software Mentions: 3
Published: almost 12 years ago

10.1186/1753-6561-5-S7-O13

Genomic selection in tree breeding: testing accuracy of prediction models including dominance effect
Cited by: 10
Author(s): Marie Denis, Jean‐Marc Bouvet
Software Mentions: 2
Published: about 13 years ago

10.3389/fgene.2013.00086

Genomic Risk Models Improve Prediction of Longitudinal Lipid Levels in Children and Young Adults
Cited by: 5
Author(s): Nathan E. Wineinger, Andrew R. Harper, Ondrej Libiger, Sathanur R. Srinivasan, Wei Chen, Gerald S. Berenson, Nicholas J. Schork
Software Mentions: 2
Published: over 11 years ago

10.1007/s11032-014-0143-y

Genome-wide prediction of three important traits in bread wheat
Cited by: 46
Author(s): G. Charmet, Eric Storlie, François-Xavier Oury, V. Laurent, D. Béghin, Laetitia Chevarin, Annie Lapierre, Marie-Reine Perretant, Bernard Rolland, Emmanuel Heumez, Laure Duchalais, Ellen Goudemand, Jacques Bordes, Olivier Robert
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2180-10-161

Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination
Cited by: 224
Author(s): Camila Carlos, Mathias M. Pires, Nancy C. Stoppe, Elayse Maria Hachich, Maria Inês Z. Sato, Tânia A. T. Gomes, Luiz Augusto do Amaral, Laura Maria Mariscal Ottoboni
Software Mentions: 2
Published: over 14 years ago

10.1186/1471-2156-15-15

Effects of single nucleotide polymorphism marker density on degree of genetic variance explained and genomic evaluation for carcass traits in Japanese Black beef cattle
Cited by: 24
Author(s): Shinichiro Ogawa, Hideaki Matsuda, Yoshinori Taniguchi, Toshio Watanabe, Syoyo Nishimura, Yoshikazu Sugimoto, Hiroaki Iwaisaki
Software Mentions: 2
Published: over 10 years ago

10.1007/s00122-012-1868-9

Genome-enabled prediction of genetic values using radial basis function neural networks
Cited by: 146
Author(s): Juan Manuel González-Camacho, Gustavo de los Campos, Paulino Pérez, Daniel Gianola, Jill E. Cairns, George Mahuku, Raman Babu, J. Crossa
Software Mentions: 1
Published: over 12 years ago

10.1186/s12863-015-0264-2

Ridge, Lasso and Bayesian additive-dominance genomic models
Cited by: 47
Author(s): Camila Ferreira Azevedo, Marcos Deon Vilela de Resende, Fabyano Fonseca e Silva, José Marcelo Soriano Viana, Marco Valente, Marcio F. R. Resende, Patricio Muñoz
Software Mentions: 1
Published: about 9 years ago

10.1186/s12863-014-0149-9

Effect of genotype imputation on genome-enabled prediction of complex traits: an empirical study with mice data
Cited by: 11
Author(s): V.P.S. Felipe, Hayrettin Okut, Daniel Gianola, Martinho A. Silva, Guilherme J. M. Rosa
Software Mentions: 1
Published: almost 10 years ago

10.1186/1752-0509-5-S3-S2

Polytomy identification in microbial phylogenetic reconstruction
Cited by: 16
Author(s): Guan Ning Lin, Chao Zhang, Dong Xu
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pgen.1002051

Beyond Missing Heritability: Prediction of Complex Traits
Cited by: 230
Author(s): Robert Makowsky, Nicholas M. Pajewski, Yann C. Klimentidis, Ana I. Vázquez, Christine W. Duarte, David B. Allison, Gustavo de los Campos
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0165323

Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness
Cited by: 29
Author(s): Jérôme Bartholome, M.C.A.M. Bink, Joost van Heerwaarden, Émilie Chancerel, Christophe Boury, Isabelle Lesur, Fikret Isik, Laurent Bouffier, Christophe Plomion
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0091693

Enhancing Genome-Enabled Prediction by Bagging Genomic BLUP
Cited by: 38
Author(s): Daniel Gianola, K.A. Weigel, Nicole Krämer, Alessandra Stella, Chris‐Carolin Schön
Software Mentions: 1
Published: over 10 years ago

10.1289/ehp.1307736

Vehicular Traffic–Related Polycyclic Aromatic Hydrocarbon Exposure and Breast Cancer Incidence: The Long Island Breast Cancer Study Project (LIBCSP)
Cited by: 72
Author(s): Irina Mordukhovich, Jan Beyea, Amy H. Herring, Maureen Hatch, Steven D. Stellman, Susan L. Teitelbaum, David B. Richardson, Robert C. Millikan, Lawrence S. Engel, Sumitra Shantakumar, Susan E. Steck, Alfred I. Neugut, Pavel Rőssner, Regina M. Santella, Marilie D. Gammon
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2013.00174

Heritability of pulmonary function estimated from pedigree and whole-genome markers
Cited by: 42
Author(s): Yann C. Klimentidis, Ana I. Vázquez, Gustavo de los Campos, David B. Allison, Mark T. Dransfield, Victor J. Thannickal
Software Mentions: 1
Published: over 11 years ago

10.1534/g3.113.010025

Heteroscedastic Ridge Regression Approaches for Genome-Wide Prediction With a Focus on Computational Efficiency and Accurate Effect Estimation
Cited by: 15
Author(s): Nina Hofheinz, Matthias Frisch
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.114.010504

Accuracy of Estimation of Genomic Breeding Values in Pigs Using Low-Density Genotypes and Imputation
Cited by: 38
Author(s): Yvonne M Badke, R. O. Bates, Catherine W. Ernst, Justin Fix, Juan P. Steibel
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.114.013094

Bayesian Genomic-Enabled Prediction as an Inverse Problem
Cited by: 6
Author(s): Jaime Cuevas, Sergio Pérez-Elizalde, Víctor Miranda Soberanis, Paulino Pérez‐Rodríguez, Daniel Gianola, J. Crossa
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12711-015-0099-3

Maximizing crossbred performance through purebred genomic selection
Cited by: 26
Author(s): Hadi Esfandyari, Anders Christian Sørensen, P. Bijma
Software Mentions: 1
Published: over 9 years ago