Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 1 year ago
3 dependent packages
1,891 downloads last month
Papers Mentioning Andromeda 1,724
10.3389/fmicb.2019.03081
Proteomic Profiling Reveals the Architecture of Granulomatous Lesions Caused by Tuberculosis and Mycobacterium avium Complex Lung DiseaseCited by: 12
Author(s): Shintaro Seto, Kozo Morimoto, Tsutomu Yoshida, Masayuki Hiramatsu, Makoto Hijikata, Toshi Nagata, Fumihito Kikuchi, Yuji Shiraishi, Atsuyuki Kurashima, Naoto Keicho
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2018.03033
Characterization of Sigma Factor Genes in Streptomyces lividans TK24 Using a Genomic Library-Based Approach for Multiple Gene DeletionsCited by: 14
Author(s): Yuriy Rebets, Konstantinos C. Tsolis, Elísabet Eik Guðmundsdóttir, Joachim Koepff, Beata Wawiernia, Tobias Busche, Arne Bleidt, Liliya Horbal, Maksym Myronovskyi, Yousra Ahmed, Wolfgang Wiechert, Christian Rückert, Mohamed Belal Hamed, Bohdan Bilyk, Jozef Anné, Ólafur H. Friðjónsson, Jörn Kalinowski, Marco Oldiges, Anastassios Economou, Andriy Luzhetskyy
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2018.03285
Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Escherichia coli Modulates Proteolysis of LpxCCited by: 31
Author(s): Nikolas Thomanek, Jan Arends, Claudia Lindemann, Katalin Barkovits, Helmut E. Meyer, Katrin Marcus, Franz Narberhaus
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2016.00533
Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival‡Cited by: 12
Author(s): Lei Shi, Vaishnavi Ravikumar, Abderahmane Derouiche, Boris Maček, Ivan Mijaković
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2019.00100
Deprivation of the Periplasmic Chaperone SurA Reduces Virulence and Restores Antibiotic Susceptibility of Multidrug-Resistant Pseudomonas aeruginosaCited by: 28
Author(s): Kristina Klein, Michael Sonnabend, Lisa Lucie Frank, Karolin Leibiger, Mirita Franz‐Wachtel, Boris Maček, Thomas Trunk, Jack C. Leo, Ingo B. Autenrieth, Monika Schütz, Erwin Bohn
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.623735
Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylated Proteins in Fusarium oxysporumCited by: 5
Author(s): Hengwei Qian, Lulu Wang, Xian-Liang Ma, Xingling Yi, Baoshan Wang, Wenxing Liang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.719337
Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in Aspergillus niger in PeanutsCited by: 6
Author(s): Manlin Xu, Xia Zhang, Jing Yu, Zhiqing Guo, Ying Liu, Xinying Song, Kang He, Guowei Li, Yucheng Chi
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2014.00751
Functional genomics of corrinoid starvation in the organohalide-respiring bacterium Dehalobacter restrictus strain PER-K23Cited by: 23
Author(s): Aamani Rupakula, Yue Lu, Thomas Kruse, Sjef Boeren, Christof Holliger, Hauke Smidt, Julien Maillard
Software Mentions: 1
Published: almost 10 years ago
10.3389/fmicb.2014.00356
Analysis of T4SS-induced signaling by H. pylori using quantitative phosphoproteomicsCited by: 17
Author(s): Frithjof Glowinski, Carsten Holland, Bernd Thiede, Peter R. Jungblut, Thomas Meyer
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2019.02613
Proteome-Wide Identification of Lysine Propionylation in the Conidial and Mycelial Stages of Trichophyton rubrumCited by: 9
Author(s): Xingye Xu, Xingwei Cao, Jian Yang, Lihong Chen, Bo Liu, Tao Liu, Qi Jin
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2020.632367
Comprehensive Succinylome Profiling Reveals the Pivotal Role of Lysine Succinylation in Energy Metabolism and Quorum Sensing of Staphylococcus epidermidisCited by: 9
Author(s): Yiping Zhao, Yang Han, Yuzhe Sun, Zhen-Dong Wei, Jialong Chen, Xueli Niu, Qian An, Li Zhang, Ruiqun Qi, Xinghua Gao
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.639123
Proteomic Analysis of Caspofungin-Induced Responses in Planktonic Cells and Biofilms of Candida albicansCited by: 3
Author(s): Peng Li, Chaminda Jayampath Seneviratne, Qingxian Luan, Lijian Jin
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2015.00237
Comparative Ser/Thr/Tyr phosphoproteomics between two mycobacterial species: the fast growing Mycobacterium smegmatis and the slow growing Mycobacterium bovis BCGCited by: 30
Author(s): Kehilwe C. Nakedi, Andrew J. M. Nel, Shaun Garnett, Jonathan M. Blackburn, Nelson C. Soares
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2019.00406
The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur SpeciesCited by: 4
Author(s): Simona Riedel, Beata Siemiątkowska, Mutsumi Watanabe, Christina S. Müller, Volker Schünemann, Rainer Hoefgen, Silke Leimkühler
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.00382
Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440Cited by: 36
Author(s): Wing‐Jin Li, Tanja Narancic, Shane T. Kenny, Paul-Joachim Niehoff, Kevin E. O’Connor, Lars M. Blank, Nick Wierckx
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.00111
Heat and Pressure Resistance in Escherichia coli Relates to Protein Folding and AggregationCited by: 15
Author(s): Hui Li, Ryan G. Mercer, Jürgen Behr, S. Heinzlmeir, Lynn M. McMullen, Rudi F. Vogel, Michael G. Gänzle
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2019.01942
The Tyrosine-Autokinase UbK Is Required for Proper Cell Growth and Cell Morphology of Streptococcus pneumoniaeCited by: 12
Author(s): Anaïs Pelletier, Céline Freton, Clément Gallay, Jennyfer Trouve, Caroline Cluzel, Mirita Franz‐Wachtel, Boris Maček, Jean‐Michel Jault, Christophe Grangeasse, Sébastien Guiral
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2020.559440
Secretome-Wide Analysis of Lysine Acetylation in Fusarium oxysporum f. sp. lycopersici Provides Novel Insights Into Infection-Related ProteinsCited by: 9
Author(s): Jingtao Li, Mingming Gao, Dean W. Gabriel, Wenxing Liang, Limin Song
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2020.00546
Iron Limitation in Klebsiella pneumoniae Defines New Roles for Lon Protease in Homeostasis and Degradation by Quantitative ProteomicsCited by: 17
Author(s): Benjamin Muselius, Arjun Sukumaran, Jason Yeung, Jennifer Geddes‐McAlister
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.00795
Comparative Proteomic Analysis of Mycobacterium tuberculosis Lineage 7 and Lineage 4 Strains Reveals Differentially Abundant Proteins Linked to Slow Growth and VirulenceCited by: 19
Author(s): Solomon Abebe Yimer, Alemayehu Godana Birhanu, Shewit Kalayou, Tahira Riaz, Ephrem Debebe Zegeye, Getachew Tesfaye Beyene, Carol Holm‐Hansen, Gunnstein Norheim, Markose Abebe, Abraham Aseffa, Tone Tønjum
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2020.565914
Phenotypic Modulation of Biofilm Formation in a Staphylococcus epidermidis Orthopedic Clinical Isolate Grown Under Different Mechanical Stimuli: Contribution From a Combined Proteomic StudyCited by: 2
Author(s): Marta Bottagisio, Pietro Barbacini, Alessandro Bidossi, Enrica Torretta, Elinor deLancey-Pulcini, Cecilia Gelfi, Garth A. James, Arianna B. Lovati, Daniele Capitanio
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2019.01401
The ER Lumenal Hsp70 Protein FpLhs1 Is Important for Conidiation and Plant Infection in Fusarium pseudograminearumCited by: 19
Author(s): Linlin Chen, Xuejing Geng, Yuming Ma, Jingya Zhao, Wenbo Chen, Xiaoping Xing, Yan Shi, Bing‐Jian Sun, Honglian Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.01844
TrypOx, a Novel Eukaryotic Homolog of the Redox-Regulated Chaperone Hsp33 in Trypanosoma bruceiCited by: 4
Author(s): Samar Aramin, Rosi Fassler, Vaibhav Chikne, Mor Goldenberg, Tal Arian, Liat Kolet Eliaz, Oded Rimon, Oren Ram, Shulamit Michaeli, Dana Reichmann
Software Mentions: 1
Published: over 4 years ago