Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
Enhanced Analysis
Educational Contributors:
msuchard@ucla.edu
Repository Activity:
Repository Owner:
Observational Health Data Sciences and Informatics (organization)
Institutional
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
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+20
Educational commit emails
1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution
Penalties:
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-15
No science keywords
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-10
No science terms in description
No scientific terms found in description -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1128/mSystems.00549-21
Proteome Dynamics during Antibiotic Persistence and ResuscitationCited by: 4
Author(s): Maja Šemanjski, Fabio Lino Gratani, Till Englert, Payal Nashier, Viktor Beke, Nicolas C. Nalpas, Elsa Germain, Shilpa Elizabeth George, Christiane Wolz, Kenn Gerdes, Boris Maček
Software Mentions: 1
Published: about 5 years ago
10.1007/s00439-021-02345-5
ASL expression in ALDH1A1+ neurons in the substantia nigra metabolically contributes to neurodegenerative phenotypeCited by: 6
Author(s): Shaul Lerner, Raya Eilam, Lital N. Adler, Julien Baruteau, Topaz Kreiser, Michael Tsoory, Alexander Brandis, Tevie Mehlman, Mina Ryten, Juan A. Botía, Sonia García-Ruiz, Alejandro Cisterna Garcia, Carlo Dionisi‐Vici, Giusy Ranucci, Marco Spada, Ram Mazkereth, Robert McCarter, Rima Izem, Thomas J Balmat, Rachel L. Richesson, Ehud Gazit, Sandesh C.S. Nagamani, Ayelet Erez
Software Mentions: 1
Published: about 5 years ago
10.1186/s40246-014-0022-y
Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysisCited by: 16
Author(s): Konstantinos Sousounis, Rital B. Bhavsar, Mario Looso, Marcus Krüger, Jessica L. Beebe, Thomas Braun, Panagiotis A. Tsonis
Software Mentions: 1
Published: almost 12 years ago
10.1038/s41396-020-00769-x
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiberCited by: 41
Author(s): Live Heldal Hagen, Charles Brooke, Claire Shaw, Angela D. Norbeck, Hailan Piao, Magnus Ø. Arntzen, Heather Olson, Alex Copeland, Nancy G. Isern, Anil Shukla, Simon Roux, Vincent Lombard, Bernard Henrissat, Michelle O’Malley, Igor V. Grigoriev, Susannah G. Tringe, Roderick I. Mackie, Ljiljana Paša‐Tolić, Phillip B. Pope, Matthias Hess
Software Mentions: 1
Published: about 6 years ago
10.1038/s41396-018-0243-5
Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal bloomsCited by: 75
Author(s): Frank Unfried, Stefan Becker, C.S. Robb, Jan Hendrik Hehemann, Stephanie Markert, Stefan E. Heiden, Tjorven Hinzke, Dörte Becher, Greta Reintjes, Karen Krüger, Burak Avcı, Lennart Kappelmann, Richard L. Hahnke, Tanja Fischer, Jens Harder, Hanno Teeling, Bernhard M. Fuchs, Tristan Barbeyron, Rudolf Amann, Thomas Schweder
Software Mentions: 1
Published: over 8 years ago
10.1186/s13046-018-0737-z
Lipid accumulation in human breast cancer cells injured by iron depletorsCited by: 15
Author(s): Maida De Bortoli, Elena Taverna, Elisa Maffioli, Patrizia Casalini, Francesco Crisafi, Vikas Kumar, Claudio Caccia, Dario Polli, Gioacchino Tedeschi, Italia Bongarzone
Software Mentions: 1
Published: over 8 years ago
10.1186/s13046-021-01879-w
Overexpressed WDR3 induces the activation of Hippo pathway by interacting with GATA4 in pancreatic cancerCited by: 9
Author(s): Wenjie Su, Shaihong Zhu, Kai Chen, Hongji Yang, Mingwu Tian, Qiang Fu, Guo‐Ming Shi, Shijian Feng, Dianyun Ren, Xin Jin, Chong Yang
Software Mentions: 1
Published: over 5 years ago
10.1186/s13046-021-02095-2
circHMGCS1–016 reshapes immune environment by sponging miR-1236-3p to regulate CD73 and GAL-8 expression in intrahepatic cholangiocarcinomaCited by: 24
Author(s): Yaping Xu, Ze-Ning Dong, Siwei Wang, Yi-Min Zheng, Chi Zhang, Yingqun Zhou, Yujie Zhao, Yan Zhao, Wenquan Feng, Rui Peng, Maochun Tang, Dou‐Sheng Bai, Xiaoyong Huang, Chuanyong Guo
Software Mentions: 1
Published: about 5 years ago
10.1084/jem.20200206
Deciphering and predicting CD4+ T cell immunodominance of influenza virus hemagglutininCited by: 26
Author(s): Antonino Cassotta, Philipp Paparoditis, Roger Geiger, Ramgopal R. Mettu, Samuel J. Landry, Alessia Donati, Marco Benevento, Mathilde Foglierini, David Lewis, Antonio Lanzavecchia, Federica Sallusto
Software Mentions: 1
Published: over 6 years ago
10.1080/20013078.2018.1490145
Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatographyCited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: over 8 years ago
10.1080/20013078.2019.1635420
Mitochondrial protein enriched extracellular vesicles discovered in human melanoma tissues can be detected in patient plasmaCited by: 94
Author(s): Su Chul Jang, Rossella Crescitelli, Aleksander Cvjetkovic, Valerio Belgrano, Roger Olofsson Bagge, Karin Sundfeldt, Takahiro Ochiya, Raghu Kalluri, Jan Lötvall
Software Mentions: 1
Published: about 7 years ago
10.1002/jev2.12109
Apoptotic vesicles restore liver macrophage homeostasis to counteract type 2 diabetesCited by: 70
Author(s): Chenxi Zheng, Bing‐Dong Sui, Xiao Zhang, Jiachen Hu, Ji Chen, Liu Jin, Di Wu, Qingyuan Ye, Lei Xiang, Xinyu Qiu, Siying Liu, Zhihong Deng, Jun Zhou, Shiyu Liu, Songtao Shi, Yan Jin
Software Mentions: 1
Published: over 5 years ago
10.1002/jev2.12129
<i>Cryptococcus</i> extracellular vesicles properties and their use as vaccine platformsCited by: 39
Author(s): Juliana Rizzo, Sarah Sze Wah Wong, Anastasia D. Gazi, Frédérique Moyrand, Thibault Chaze, Pierre‐Henri Commère, Sophie Novault, Mariette Matondo, Gérard Péhau‐Arnaudet, Flavia C G Reis, Matthijn Vos, Lysangela Ronalte Alves, Robin C. May, Leonardo Nimrichter, Márcio L. Rodrigues, Vishukumar Aimanianda, Guilhem Janbon
Software Mentions: 1
Published: over 5 years ago
10.3390/jof5010007
Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella LarvaeCited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: almost 8 years ago
10.3390/jof6020042
Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress ResponseCited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 6 years ago
10.3390/jof7090748
ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis ManifestationCited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: about 5 years ago
10.1155/2015/678527
Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa CellsCited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: about 11 years ago
10.1155/2015/841769
SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma PatientsCited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: over 11 years ago
10.1167/iovs.17-22927
Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial CellsCited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: over 8 years ago
10.1038/s41388-019-0971-7
Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: about 7 years ago
10.1093/jisesa/ieab057
Identification of N-linked Glycoproteins in Silkworm Serum Using Con A Lectin Affinity Chromatography and Mass SpectrometryCited by: 0
Author(s): Zhaoming Dong, Lin Ye, Yan Zhang, Zhiyong Chen, Benchi Li, Tao Zhang, Ping Zhao
Software Mentions: 1
Published: over 5 years ago
10.1038/s41389-021-00334-x
MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5Cited by: 9
Author(s): Krista Juurikka, Antoine Dufour, Kari P. Pehkonen, Barbara Mainoli, Priscila Campioni Rodrigues, Nestor Solis, Théo Klein, Pia Nyberg, Christopher M. Overall, Tuula Salo, Pirjo Åström
Software Mentions: 1
Published: over 5 years ago
10.1194/jlr.RA120001126
Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic controlCited by: 18
Author(s): Stacey N Keenan, William De Nardo, Jieqiong Lou, Ralf B. Schittenhelm, Magdalene K Montgomery, James G. Granneman, Elizabeth Hinde, Matthew J. Watt
Software Mentions: 1
Published: almost 6 years ago