Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
Enhanced Analysis
Educational Contributors:
msuchard@ucla.edu
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Repository Owner:
Observational Health Data Sciences and Informatics (organization)
Institutional
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
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+20
Educational commit emails
1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution
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-10
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-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1016/j.chom.2012.06.005
Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and PathogenesisCited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: about 14 years ago
10.3390/molecules25184071
High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in PlasmaCited by: 10
Author(s): Elisa Maffioli, Zhenze Jiang, Simona Nonnis, Armando Negri, Valentina Romeo, Christopher B. Lietz, Vivian Hook, Giuseppe Ristagno, Giuseppe Baselli, Erik B. Kistler, Federico Aletti, Anthony J. O’Donoghue, Gioacchino Tedeschi
Software Mentions: 1
Published: about 6 years ago
10.1016/j.cmet.2013.04.010
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: over 13 years ago
10.1007/s00018-021-03845-3
The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand releaseCited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 5 years ago
10.3390/molecules26082397
Proteomic and Bioinformatic Investigation of Altered Pathways in Neuroglobin-Deficient Breast Cancer CellsCited by: 16
Author(s): Michele Costanzo, Marco Fiocchetti, Paolo Ascenzi, Maria Marino, Marianna Caterino, Margherita Ruoppolo
Software Mentions: 1
Published: over 5 years ago
10.1111/mec.15298
Evidence for a role of protein phosphorylation in the maintenance of the cnidarian–algal symbiosisCited by: 5
Author(s): Fabia Simona, Huoming Zhang, Christian R. Voolstra
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.celrep.2020.108235
Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC DegradationCited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: almost 6 years ago
10.1074/mcp.M116.064428
Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and AngiogenesisCited by: 24
Author(s): Ivor H. Evans, Susan Kennedy, Ketevan Paliashvili, Tapesh Santra, Maiko Yamaji, Ruth C. Lovering, Gary Britton, Paul Frankel, Walter Kölch, Ian Zachary
Software Mentions: 1
Published: over 9 years ago
10.1074/mcp.RA119.001367
The Systemin Signaling Cascade As Derived from Time Course Analyses of the Systemin-responsive Phosphoproteome*Cited by: 22
Author(s): F. Haj Ahmad, Xu Wu, Annick Stintzi, Andreas Schaller, Waltraud X. Schulze
Software Mentions: 1
Published: about 7 years ago
10.1016/j.celrep.2016.02.040
Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal AutophagyCited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 10 years ago
10.1016/j.celrep.2017.03.020
Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome ReplicationCited by: 37
Author(s): Marija Marić, Progya P. Mukherjee, Michael H. Tatham, Ronald T. Hay, Karim Labib
Software Mentions: 1
Published: over 9 years ago
10.1016/j.celrep.2018.09.007
Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription TerminationCited by: 53
Author(s): Tea Kecman, Krzysztof Kuś, Dong-Hyuk Heo, K Duckett, Adrien Birot, Sabrina Liberatori, Shabaz Mohammed, Lucía Geis-Asteggiante, Carol V. Robinson, Lidia Vasiljeva
Software Mentions: 1
Published: almost 8 years ago
10.1074/mcp.RA120.002049
High-dimensional Cytometry (ExCYT) and Mass Spectrometry of Myeloid Infiltrate in Clinically Localized Clear Cell Renal Cell Carcinoma Identifies Novel Potential Myeloid Targets for ImmunotherapyCited by: 1
Author(s): Debebe Theodros, Benjamin Murter, John-William Sidhom, Thomas R. Nirschl, David Clark, Li Jun Chen, Ada Tam, Richard L. Blosser, Zeyad Schwen, Michael H. Johnson, Phillip M. Pierorazio, Hui Zhang, Sudipto Ganguly, Drew M. Pardoll, Jelani C. Zarif
Software Mentions: 1
Published: almost 6 years ago
10.7554/eLife.32111
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistanceCited by: 84
Author(s): Daniel J. Fazakerley, Rima Chaudhuri, Pengyi Yang, Ghassan J. Maghzal, Kristen C. Thomas, James R. Krycer, Sean J. Humphrey, Benjamin L. Parker, Kelsey H. Fisher‐Wellman, Christopher C. Meoli, Nolan J. Hoffman, Ciana Diskin, James G. Burchfield, Mark J. Cowley, Warren Kaplan, Zora Modrušan, Ganesh Kolumam, Pengyi Yang, Daniel L. Chen, Dorit Samocha-Bonet, Jerry R. Greenfield, Kyle L. Hoehn, Roland Stocker, David E. James
Software Mentions: 1
Published: over 8 years ago
10.1074/mcp.TIR120.002129
ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond MappingCited by: 21
Author(s): Diana Samodova, Christopher M. Hosfield, Christian N. Cramer, Maria Valeria Giuli, Enrico Cappellini, Giulia Franciosa, Michael Rosenblatt, Christian D. Kelstrup, Jesper V. Olsen
Software Mentions: 1
Published: almost 6 years ago
10.1074/mcp.RA118.000958
Mass Spectrometry-based Absolute Quantification of 20S Proteasome Status for Controlled Ex-vivo Expansion of Human Adipose-derived Mesenchymal Stromal/Stem CellsCited by: 17
Author(s): Thomas Menneteau, Bertrand Fabre, Luc Garrigues, Alexandre Stella, Dušan Živković, Florence Roux‐Dalvai, Emmanuelle Mouton-Barbosa, Mathilde Beau, Marie-Laure Renoud, François Amalríc, Luc Sensebé, Anne Gonzalez de Peredo, Isabelle Ader, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2019.01.027
Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst ComplexCited by: 27
Author(s): Ye Dee Tay, Marcin Leda, Christos Spanos, Juri Rappsilber, Andrew B. Goryachev, Kenneth E. Sawin
Software Mentions: 1
Published: over 7 years ago
10.1016/j.celrep.2018.10.104
Deletion of APC7 or APC16 Allows Proliferation of Human Cells without the Spindle Assembly CheckpointCited by: 11
Author(s): Thomas Wild, Magda Budzowska, Susanne Hellmuth, Susana Eibes, Gopal Karemore, Marin Barišić, Olaf Stemmann, Chunaram Choudhary
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.celrep.2018.08.092
Interplay of Histone Marks with Serine ADP-RibosylationCited by: 72
Author(s): Edward Bartlett, Juán José Bonfiglio, Evgeniia Prokhorova, Thomas Colby, Florian Zobel, Ivan Ahel, Ivan Matić
Software Mentions: 1
Published: about 8 years ago
10.1074/mcp.M115.050245
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression ProfilesCited by: 71
Author(s): Sally J. Deeb, Stefka Tyanova, Michael Hummel, Marc Schmidt-Supprian, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago
10.7554/eLife.00785
MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascadesCited by: 270
Author(s): Siqi Liu, Jueqi Chen, Xin Cai, Jiaxi Wu, Xiang Chen, You Wu, Lijun Sun, Zhijian J. Chen
Software Mentions: 1
Published: about 13 years ago
10.1038/s41422-020-0294-9
The PIWI protein Aubergine recruits eIF3 to activate translation in the germ plasmCited by: 21
Author(s): Anne Ramat, Maria-Rosa Garcia-Silva, Camille Jahan, Rima Naït-Saïdi, Jérémy Dufourt, Céline Garret, Aymeric Chartier, Julie Cremaschi, Vipul Patel, Mathilde Decourcelle, Amandine Bastide, François Juge, Martine Simonelig
Software Mentions: 1
Published: over 6 years ago
10.1007/s12192-015-0583-2
Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPsCited by: 67
Author(s): Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, Pierre Goloubinoff
Software Mentions: 1
Published: over 11 years ago