Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
Enhanced Analysis
Educational Contributors:
msuchard@ucla.edu
Repository Activity:
Repository Owner:
Observational Health Data Sciences and Informatics (organization)
Institutional
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
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+20
Educational commit emails
1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution
Penalties:
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-15
No science keywords
No scientific terms found in keywords/classifiers -
-10
No science terms in description
No scientific terms found in description -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1186/1471-2105-13-S16-S12
1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput dataCited by: 493
Author(s): Juergen Cox, Matthias Mann
Software Mentions: 1
Published: almost 14 years ago
10.1007/s10456-019-09688-8
Cancer-associated fibroblast-derived WNT2 increases tumor angiogenesis in colon cancerCited by: 141
Author(s): Daniela Unterleuthner, Patrick Neuhold, Katharina Schwarz, Lukas Janker, Benjamin Neuditschko, Harini Nivarthi, Ilija Crnčec, Nina Kramer, Christine Unger, Markus Hengstschläger, Robert Eferl, Richard Moriggl, Wolfgang Sommergruber, Christopher Gerner, Helmut Dolznig
Software Mentions: 1
Published: almost 7 years ago
10.1186/s40478-019-0806-3
Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophyCited by: 16
Author(s): Wiebke A. Rehorst, Maximilian P. Thelen, Hendrik Nolte, Clara Türk, Sebahattin Çırak, Jonathan M. Peterson, G. William Wong, Brunhilde Wirth, Marcus Krüger, Dominic Winter, Min Jeong Kye
Software Mentions: 1
Published: almost 7 years ago
10.3390/antibiotics10020116
Staphylococcus aureus Interferes with Streptococci Spatial Distribution and with Protein Expression of Species within a Polymicrobial Oral BiofilmCited by: 7
Author(s): Etyene Schnurr, Pune Nina Paqué, Thomas Attin, Paolo Nanni, Jonas Grossmann, Silva Holtfreter, Barbara M. Bröker, Christian Köhler, Binh An Diep, Apoena de Aguiar Ribeiro, Thomas Thurnheer
Software Mentions: 1
Published: over 5 years ago
10.3390/antibiotics8040248
Proteomic and Metabolomic Analyses of a Tea-Tree Oil-Selected Staphylococcus aureus Small Colony VariantCited by: 4
Author(s): Nathanial Torres, Steven D. Hartson, Janet Rogers, John E. Gustafson
Software Mentions: 1
Published: over 6 years ago
10.3390/antibiotics9110757
Putative Antimicrobial Peptides of the Posterior Salivary Glands from the Cephalopod Octopus vulgaris Revealed by Exploring a Composite Protein DatabaseCited by: 6
Author(s): Daniela Almeida, Dany Domínguez-Pérez, Ana Lemos de Matos, Guillermı́n Agüero-Chapin, Hugo Osório, Vı́tor Vasconcelos, Alexandre Campos, Agostinho Antunes
Software Mentions: 1
Published: almost 6 years ago
10.3390/antibiotics10050501
Proteomic Charting of Imipenem Adaptive Responses in a Highly Carbapenem Resistant Clinical Enterobacter roggenkampii IsolateCited by: 1
Author(s): Suruchi Nepal, Sandra Maaß, Stefano Grasso, Francis M. Cavallo, Jürgen Bartel, Dörte Becher, Erik Bathoorn, Jan Maarten van Dijl
Software Mentions: 1
Published: over 5 years ago
10.3390/antiox10071134
The Interplay between S-Glutathionylation and Phosphorylation of Cardiac Troponin I and Myosin Binding Protein C in End-Stage Human Failing HeartsCited by: 12
Author(s): Heidi Budde, Roua Hassoun, Melina Tangos, Saltanat Zhazykbayeva, Melissa Herwig, Marharyta Varatnitskaya, Marcel Sieme, Simin Delalat, Innas Sultana, Detmar Kolijn, Kamilla Gömöri, Muhammad Jarkas, Mária Lódi, Kornélia Jaquet, Árṕad Kov́acs, Hans Georg Mannherz, Vasco Sequeira, Andreas Mügge, Lars I. Leichert, Samuel Sossalla, Nazha Hamdani
Software Mentions: 1
Published: about 5 years ago
10.3390/antiox10071055
Novel Extract from Beetle Ulomoides dermestoides: A Study of Composition and Antioxidant ActivityCited by: 10
Author(s): Н. А. Ушакова, E. S. Brodsky, Olga V. Tikhonova, А. Е. Донцов, М. В. Марсова, A. A. Shelepchikov, А. И. Бастраков
Software Mentions: 1
Published: about 5 years ago
10.1021/acsomega.0c05997
Influence of Post-Translational Modifications on Protein Identification in Database SearchesCited by: 4
Author(s): Fanni Bugyi, Dániel Szabó, Győző Szabó, Ágnes Révész, Veronika F.S. Pape, Eszter Soltész‐Katona, Eszter Tóth, Orsolya Kovács, Tamás Langó, Károly Vékey, László Drahos
Software Mentions: 1
Published: over 5 years ago
10.1093/aobpla/plaa042
A proteomic analysis of grain yield-related traits in wheatCited by: 11
Author(s): Sintayehu Daba, Xiaoqin Liu, Uma K. Aryal, Mohsen Mohammadi
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40478-020-00943-4
Transmission of ALS pathogenesis by the cerebrospinal fluidCited by: 26
Author(s): Pooja-Shree Mishra, Hejer Boutej, Geneviève Soucy, Christine Bareil, Sunil Kumar, Vincent Picher-Martel, Nicolas Dupré, Jasna Križ, Jean‐Pierre Julien
Software Mentions: 1
Published: over 6 years ago
10.1007/s00401-014-1329-4
C9orf72 FTLD/ALS-associated Gly-Ala dipeptide repeat proteins cause neuronal toxicity and Unc119 sequestrationCited by: 277
Author(s): Stephanie May, Daniel Hornburg, Martin H. Schludi, Thomas Arzberger, Kristin Rentzsch, Benjamin M. Schwenk, Friedrich A. Grässer, Kohji Mori, Elisabeth Kremmer, Julia Banzhaf-Strathmann, Matthias Mann, Felix Meissner, Dieter Edbauer
Software Mentions: 1
Published: about 12 years ago
10.1128/AEM.02808-19
Identification of Genes Required for Glucan Exopolysaccharide Production in Lactobacillus johnsonii Suggests a Novel Biosynthesis MechanismCited by: 12
Author(s): Melinda J. Mayer, Alfonsina D’Amato, Ian J. Colquhoun, Gwénaëlle Le Gall, Arjan Narbad
Software Mentions: 1
Published: over 6 years ago
10.1007/s00253-020-10654-4
Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteriaCited by: 4
Author(s): Lasse van Geelen, Farnusch Kaschani, Shabnam Shaneh Sazzadeh, Emmanuel T Adeniyi, Dieter Meier, Peter Proksch, Klaus Pfeffer, Markus Kaiser, Thomas R. Ioerger, Rainer Kalscheuer
Software Mentions: 1
Published: over 6 years ago
10.1007/s00203-017-1381-2
Identification of proteins differentially expressed by Chlamydia trachomatis treated with chlamydiaphage capsid protein VP1 during intracellular growthCited by: 7
Author(s): Jingyue Ma, Yuan Sun, Changgui Sun, Quan Zhou, Mei Qi, Jie Kong, Jing Wang, Yuanjun Liu, Quanzhong Liu
Software Mentions: 1
Published: over 9 years ago
10.1007/s00204-021-03042-y
Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier functionCited by: 7
Author(s): Giorgia Del Favero, Lukas Janker, Benjamin Neuditschko, Julia Hohenbichler, Еndre Kiss, Lydia Woelflingseder, Christopher Gerner, Doris Marko
Software Mentions: 1
Published: over 5 years ago
10.1007/s00204-020-02712-7
Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of actionCited by: 13
Author(s): Bharath Sampadi, Alex Pines, Stephanie Munk, Branislav Mišovic, Anton J. de Groot, Bob van de Water, Jesper V. Olsen, Leon H.F. Mullenders, Harry Vrieling
Software Mentions: 1
Published: over 6 years ago
10.1007/s12520-020-01199-8
Child murder in the Early Bronze Age: proteomic sex identification of a cold case from Schleinbach, AustriaCited by: 15
Author(s): Katharina Rebay‐Salisbury, Lukas Janker, Doris Pany‐Kucera, Dina Schuster, Michaela Spannagl‐Steiner, Lukas Waltenberger, Roderick B. Salisbury, Fabian Kanz
Software Mentions: 1
Published: almost 6 years ago
10.1002/advs.202002596
Exosomes for Wound Healing: Purification Optimization and Identification of Bioactive ComponentsCited by: 46
Author(s): Britta Hettich, Maya Ben‐Yehuda Greenwald, Sabine Werner, Jean‐Christophe Leroux
Software Mentions: 1
Published: almost 6 years ago
10.18632/aging.202361
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulationCited by: 10
Author(s): Maria Hernandez-Valladares, Elise Aasebø, Frode S. Berven, Frode Selheim, Øystein Bruserud
Software Mentions: 1
Published: over 5 years ago
10.18632/aging.101404
Induction, regulation and roles of neural adhesion molecule L1CAM in cellular senescenceCited by: 12
Author(s): Blanka Mrázková, Rastislav Dzijak, Terezie Imrichová, Lenka Kyjacová, Péter Baráth, Petr Džubák, Dušan Holub, Marián Hajdúch, Zuzana Nahácka, Ladislav Anděra, Petr Holicek, Pavla Vašicová, Olena Sapega, Jiří Bártek, Zdeněk Hodný
Software Mentions: 1
Published: over 8 years ago
10.1111/acel.13192
The aged hematopoietic system promotes hippocampal‐dependent cognitive declineCited by: 15
Author(s): Lucas K. Smith, Evgenia Verovskaya, Gregor Bieri, Alana Horowitz, Saskia N. I. von Ungern‐Sternberg, Karin Lin, Peter Seizer, Emmanuelle Passegué, Saul Villeda
Software Mentions: 1
Published: about 6 years ago