Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
Enhanced Analysis
Educational Contributors:
msuchard@ucla.edu
Repository Activity:
Repository Owner:
Observational Health Data Sciences and Informatics (organization)
Institutional
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
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+20
Educational commit emails
1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution
Penalties:
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-15
No science keywords
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-10
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No scientific terms found in description -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.3389/fimmu.2019.01648
Endoplasmic Reticulum Associated Aminopeptidase 2 (ERAP2) Is Released in the Secretome of Activated MDMs and Reduces in vitro HIV-1 InfectionCited by: 21
Author(s): Irma Saulle, Salomè V. Ibba, Enrica Torretta, Cecilia Vittori, Claudio Fenizia, Federica Piancone, Davide Minisci, Elisa Lori, Daria Trabattoni, Cecilia Gelfi, Mario Clerici, Mara Biasin
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2021.657562
Phosphoproteome Study of Escherichia coli Devoid of Ser/Thr Kinase YeaG During the Metabolic Shift From Glucose to MalateCited by: 9
Author(s): Abida Sultan, Carsten Jers, Tariq Ganief, Lei Shi, Mériem Senissar, Julie Bonne Køhler, Boris Maček, Ivan Mijaković
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.08153
Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunitsCited by: 80
Author(s): Diego Acosta‐Alvear, Min Y. Cho, Thomas Wild, Tonia J. Buchholz, Andrew D. Lerner, Olga Šimáková, Jamie Hahn, Neha Korde, Ola Landgren, Irina Marić, Chunaram Choudhary, Peter Walter, Jonathan S. Weissman, Martin Kampmann
Software Mentions: 1
Published: about 11 years ago
10.7554/eLife.25555
Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagyCited by: 280
Author(s): Paolo Grumati, Giulio Morozzi, Soraya Hölper, Muriel Mari, Marie Lena I.E. Harwardt, Riqiang Yan, Stefan Müller, Fulvio Reggiori, Mike Heilemann, Ivan Đikić
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2016.01927
Global Lysine Acetylome Analysis of Desiccated Somatic Embryos of Picea asperataCited by: 15
Author(s): Yan Xia, Danlong Jing, Lisheng Kong, Jianwei Zhang, Fangqun Ouyang, Hanguo Zhang, Junhui Wang, Shougong Zhang
Software Mentions: 1
Published: over 9 years ago
10.3389/fmicb.2020.597818
Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic BacteriumCited by: 14
Author(s): С. Н. Гаврилов, Д. Г. Заварзина, Ivan M. Elizarov, Т. V. Tikhonova, Н. И. Дергоусова, Vladimir O. Popov, Jonathan R. Lloyd, David Knight, Mohamed Y. El‐Naggar, Sahand Pirbadian, Kar Man Leung, Frank T. Robb, Maksim Zakhartsev, Orianna Bretschger, E. A. Bonch-Osmolovskaya
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.62470
Identification of host proteins differentially associated with HIV-1 RNA splice variantsCited by: 14
Author(s): Rachel A. Knoener, Edward L. Evans, Jordan T. Becker, Mark Scalf, Bayleigh E. Benner, Nathan M. Sherer, Lloyd M. Smith
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.ppat.1008855
SAMHD1 phosphorylation and cytoplasmic relocalization after human cytomegalovirus infection limits its antiviral activityCited by: 12
Author(s): Simone De Meo, Valentina Dell’Oste, Rosa Molfetta, Valentina Tassinari, Lavinia Vittoria Lotti, Simone Vespa, Benedetta Pignoloni, Daniela Angela Covino, Laura Fantuzzi, Roberta Bona, Alessandra Zingoni, Ilaria Nardone, Matteo Biolatti, Alessandra Coscia, Rossella Paolini, Monsef Benkirane, Fredrik Edfors, Tatyana Sandalova, Adnane Achour, John Hiscott, Santo Landolfo, Angela Santoni, Cristina Cerboni
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.ppat.1009134
The SUMOylation pathway suppresses arbovirus replication in Aedes aegypti cellsCited by: 4
Author(s): Samuel Stokes, Floriane Almire, Michael H. Tatham, Steven McFarlane, Peter Mertens, Emilie Pondeville, Chris Boutell
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.00592
Proteomics Reveal Enhanced Oxidative Stress Responses and Metabolic Adaptation in Acidithiobacillus ferrooxidans Biofilm Cells on PyriteCited by: 42
Author(s): Sören Bellenberg, Dieu Huynh, Ansgar Poetsch, Wolfgang Sand, Mario Vera
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2019.00097
New Insights for RANKL as a Proinflammatory Modulator in Modeled Inflammatory ArthritisCited by: 30
Author(s): Maria Papadaki, Vagelis Rinotas, Foteini Violitzi, Trias Thireou, George Panayotou, Martina Samiotaki, Eleni Douni
Software Mentions: 1
Published: over 7 years ago
10.3389/fimmu.2018.00405
Differential Phagocytic Properties of CD45low Microglia and CD45high Brain Mononuclear Phagocytes—Activation and Age-Related EffectsCited by: 80
Author(s): Srikant Rangaraju, Syed Ali Raza, Noel Xiang'An Li, Ranjita Betarbet, Eric B. Dammer, Duc M. Duong, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2018.03130
Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1Cited by: 29
Author(s): Benjamin H. Gregson, Gergana Metodieva, Metodi V. Metodiev, Peter N. Golyshin, Boyd A. McKew
Software Mentions: 1
Published: over 7 years ago
10.1073/pnas.1910262116
Corazonin signaling integrates energy homeostasis and lunar phase to regulate aspects of growth and sexual maturation in <i>Platynereis</i>Cited by: 44
Author(s): Gabriele Andreatta, Caroline Broyart, Charline Borghgraef, Karim Vadiwala, V. V. Kozin, Alessandra Polo, Andrea Bileck, Isabel Beets, Liliane Schoofs, Christopher Gerner, Florian Raible
Software Mentions: 1
Published: over 6 years ago
10.1073/pnas.1905641117
Direct visualization of degradation microcompartments at the ER membraneCited by: 62
Author(s): Sahradha Albert, Wojciech Wietrzyñski, Chia-Wei Lee, Miroslava Schaffer, Florian Beck, Jan M. Schuller, Patrice A. Salomé, Jürgen M. Plitzko, Wolfgang Baumeister, Benjamin D. Engel
Software Mentions: 1
Published: over 6 years ago
10.3390/nu13082657
Anti-Salmonella Activity and Peptidomic Profiling of Peptide Fractions Produced from Sturgeon Fish Skin Collagen (Huso huso) Using Commercial EnzymesCited by: 8
Author(s): Maryam Atef, Yasmina Ait Chait, Seýed Mahdi Ojagh, Ali Mohammad Latifi, Mina Esmaeili, Riadh Hammami, Chibuike C. Udenigwe
Software Mentions: 1
Published: about 5 years ago
10.1186/1477-5956-10-28
In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia giganteaCited by: 75
Author(s): Karlheinz Mann, Eric Edsinger, Matthias Mann
Software Mentions: 1
Published: over 14 years ago
10.1186/1477-5956-11-40
The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshellCited by: 41
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: over 13 years ago
10.1186/1477-5956-11-43
Quantitative proteomics reveals regulatory differences in the chondrocyte secretome from human medial and lateral femoral condyles in osteoarthritic patientsCited by: 35
Author(s): Johan Stenberg, Ulla Rüetschi, Eva Skiöldebrand, Johan Kärrholm, Anders Lindahl
Software Mentions: 1
Published: almost 13 years ago
10.1186/1477-5956-12-41
Probing SH2-domains using Inhibitor Affinity Purification (IAP)Cited by: 10
Author(s): Michael Höfener, Stephanie Heinzlmeir, Bernhard Küster, Norbert Sewald
Software Mentions: 1
Published: about 12 years ago
10.1186/s12953-015-0078-1
Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomesCited by: 27
Author(s): Karlheinz Mann, Matthias Mann
Software Mentions: 1
Published: about 11 years ago
10.1186/s12953-015-0086-1
The calcified eggshell matrix proteome of a songbird, the zebra finch (Taeniopygia guttata)Cited by: 29
Author(s): Karlheinz Mann
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2020.01497
Comprehensive Transcriptome and Proteome Analyses Reveal the Modulation of Aflatoxin Production by Aspergillus flavus on Different Crop SubstratesCited by: 6
Author(s): Li Xu, Yiran Jiang, Longxue Ma, Xiaoyun Ma, Yang Liu, Jianguo Shan, Ke Ma, Fuguo Xing
Software Mentions: 1
Published: about 6 years ago