Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
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Educational Contributors:
msuchard@ucla.edu
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Observational Health Data Sciences and Informatics (organization)
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Science Score: 85/100
Starting Score: 100 points
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+20
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1 contributors with educational email addresses -
+15
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Repository owned by research institution
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Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1038/s41419-020-03177-3
EMC6 regulates acinar apoptosis via APAF1 in acute and chronic pancreatitisCited by: 18
Author(s): Junjie Tan, Rong-chang Cao, Lei Zhou, Zhaoxi Zhou, Huoji Chen, Jia Xu, Xuemei Chen, Yang-Chen Jin, Jiayu Lin, Zhao-chang Qi, Jing Zeng, Shu-Ji Li, Min Luo, Guodong Hu, Jin Jin, Guowei Zhang
Software Mentions: 1
Published: almost 6 years ago
10.1074/mcp.RA119.001367
The Systemin Signaling Cascade As Derived from Time Course Analyses of the Systemin-responsive Phosphoproteome*Cited by: 22
Author(s): F. Haj Ahmad, Xu Wu, Annick Stintzi, Andreas Schaller, Waltraud X. Schulze
Software Mentions: 1
Published: about 7 years ago
10.1038/s41419-018-0349-8
DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 miceCited by: 30
Author(s): Shoujun Zheng, Lirong Xiao, Yu Liu, Yujiao Wang, Lin Cheng, Junjun Zhang, Naihong Yan, Danian Chen
Software Mentions: 1
Published: over 8 years ago
10.1038/s41419-020-2645-3
LncRNA ANRIL acts as a modular scaffold of WDR5 and HDAC3 complexes and promotes alteration of the vascular smooth muscle cell phenotypeCited by: 53
Author(s): Chengxin Zhang, Shangqing Ge, Wei Gong, Jinguo Xu, Zhixin Guo, Zhuang Liu, Xiaotian Gao, Xiaoyong Wei, Shuping Ge
Software Mentions: 1
Published: about 6 years ago
10.1074/mcp.RA120.002049
High-dimensional Cytometry (ExCYT) and Mass Spectrometry of Myeloid Infiltrate in Clinically Localized Clear Cell Renal Cell Carcinoma Identifies Novel Potential Myeloid Targets for ImmunotherapyCited by: 1
Author(s): Debebe Theodros, Benjamin Murter, John-William Sidhom, Thomas R. Nirschl, David Clark, Li Jun Chen, Ada Tam, Richard L. Blosser, Zeyad Schwen, Michael H. Johnson, Phillip M. Pierorazio, Hui Zhang, Sudipto Ganguly, Drew M. Pardoll, Jelani C. Zarif
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41419-020-2285-7
Alpha-synuclein fragments trigger distinct aggregation pathwaysCited by: 18
Author(s): Tasnim Chakroun, Valentin Evsyukov, Niko-Petteri Nykänen, Matthias Höllerhage, Andreas Schmidt, Frits Kamp, Viktoria Ruf, Wolfgang Wurst, Thomas W. Rösler, Günter U. Höglinger
Software Mentions: 1
Published: over 6 years ago
10.1038/cddis.2017.265
Isodeoxyelephantopin induces protective autophagy in lung cancer cells via Nrf2-p62-keap1 feedback loopCited by: 59
Author(s): Yang Wang, Jing Zhang, Zhi‐Hao Huang, Xiaohui Huang, Wei-Bin Zheng, Xinhua Yin, Yao-Lan Li, Bin Li, Qing‐Yu He
Software Mentions: 1
Published: about 9 years ago
10.1038/s41419-020-2523-z
Formate induces a metabolic switch in nucleotide and energy metabolismCited by: 28
Author(s): Kristell Oizel, Jacqueline Tait-Mulder, Jorge Fernández-de-Cossio-Díaz, Matthias Pietzke, Holly Brunton, Sérgio Lilla, Sandeep Dhayade, Dimitris Athineos, Giovanny Rodriguez Blanco, David Sumpton, Gillian Mackay, Karen Blyth, Sara Zanivan, Johannes Meiser, Alexei Vazquez
Software Mentions: 1
Published: over 6 years ago
10.1186/s12866-017-1004-8
Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesisCited by: 8
Author(s): Getachew Tesfaye Beyene, Shewit Kalayou, Tahira Riaz, Tone Tønjum
Software Mentions: 1
Published: over 9 years ago
10.1038/s41420-021-00539-4
The proteolytic landscape of cells exposed to non-lethal stresses is shaped by executioner caspasesCited by: 4
Author(s): Maria del Carmen Conde Rubio, Roman Mylonas, Christian Widmann
Software Mentions: 1
Published: about 5 years ago
10.1038/celldisc.2016.1
Deubiquitylating enzyme USP9x regulates hippo pathway activity by controlling angiomotin protein turnoverCited by: 33
Author(s): Hung Thanh Nguyen, Diāna Andrējeva, Rajat Gupta, Chunaram Choudhary, Xin Hong, Pieter J.A. Eichhorn, Anand C Loya, Stephen M. Cohen
Software Mentions: 1
Published: over 10 years ago
10.1080/20013078.2018.1490145
Enrichment of extracellular vesicles from human synovial fluid using size exclusion chromatographyCited by: 69
Author(s): Andrew D Foers, Simon Chatfield, Laura F. Dagley, Benjamin J. Scicluna, Andrew I. Webb, Lesley Cheng, Andrew F. Hill, Ian P. Wicks, Ken C Pang
Software Mentions: 1
Published: about 8 years ago
10.1038/s41421-018-0041-2
RPS3A positively regulates the mitochondrial function of human periaortic adipose tissue and is associated with coronary artery diseasesCited by: 18
Author(s): Yan Tang, Yi He, Chen Li, Wenjuan Mu, Ying Zou, Conghui Liu, Shuwen Qian, Fuchuang Zhang, Jiabao Pan, Yina Wang, Haiyan Huang, Dongning Pan, Pengyuan Yang, Ju Mei, Rong Zeng, Qi‐Qun Tang
Software Mentions: 1
Published: about 8 years ago
10.1016/j.chom.2012.06.005
Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and PathogenesisCited by: 163
Author(s): Matthew L. Jones, Mark O. Collins, David Goulding, Jyoti S. Choudhary, Julian C. Rayner
Software Mentions: 1
Published: about 14 years ago
10.1074/mcp.TIR120.002129
ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond MappingCited by: 21
Author(s): Diana Samodova, Christopher M. Hosfield, Christian N. Cramer, Maria Valeria Giuli, Enrico Cappellini, Giulia Franciosa, Michael Rosenblatt, Christian D. Kelstrup, Jesper V. Olsen
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.cmet.2013.04.010
Dynamic Adipocyte Phosphoproteome Reveals that Akt Directly Regulates mTORC2Cited by: 328
Author(s): Sean J. Humphrey, Guang Yang, Pengyi Yang, Daniel J. Fazakerley, Jacqueline Stöckli, Pengyi Yang, David E. James
Software Mentions: 1
Published: over 13 years ago
10.1007/s00018-021-03845-3
The iRhom homology domain is indispensable for ADAM17-mediated TNFα and EGF receptor ligand releaseCited by: 8
Author(s): Stefan Düsterhöft, Selcan Kahveci-Türköz, Justyna Wozniak, Anke Seifert, Petr Kašpárek, Henrike Ohm, Shixin Liu, Jana Kopkanova, Juliane Lokau, Christoph Garbers, Christian Preisinger, Radislav Sedláček, Matthew Freeman, Andreas Ludwig
Software Mentions: 1
Published: over 5 years ago
10.1074/mcp.RA118.000958
Mass Spectrometry-based Absolute Quantification of 20S Proteasome Status for Controlled Ex-vivo Expansion of Human Adipose-derived Mesenchymal Stromal/Stem CellsCited by: 17
Author(s): Thomas Menneteau, Bertrand Fabre, Luc Garrigues, Alexandre Stella, Dušan Živković, Florence Roux‐Dalvai, Emmanuelle Mouton-Barbosa, Mathilde Beau, Marie-Laure Renoud, François Amalríc, Luc Sensebé, Anne Gonzalez de Peredo, Isabelle Ader, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet
Software Mentions: 1
Published: over 7 years ago
10.1074/mcp.M115.050245
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression ProfilesCited by: 71
Author(s): Sally J. Deeb, Stefka Tyanova, Michael Hummel, Marc Schmidt-Supprian, Juergen Cox, Matthias Mann
Software Mentions: 1
Published: almost 11 years ago
10.1016/j.celrep.2020.108235
Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC DegradationCited by: 27
Author(s): Timothy K. Soh, Colin Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, C. L. Smith, Edward Emmott, Robin Antrobus, Stephen C. Graham, Michael P. Weekes, Colin M. Crump
Software Mentions: 1
Published: almost 6 years ago
10.1074/mcp.M116.060582
Coordination of Metabolism and Virulence Factors Expression of Extraintestinal Pathogenic Escherichia coli Purified from Blood Cultures of Patients with SepsisCited by: 18
Author(s): Veronika Kuchařová Pettersen, Knut Anders Mosevoll, Paul Christoffer Lindemann, Harald G. Wiker
Software Mentions: 1
Published: about 10 years ago
10.1074/mcp.RA120.002384
Proteomic Analyses Identify Differentially Expressed Proteins and Pathways Between Low-Risk and High-Risk Subtypes of Early-Stage Lung Adenocarcinoma and Their Prognostic ImpactsCited by: 8
Author(s): Juntuo Zhou, Bing Liu, Zhongwu Li, Yang Li, Xi Chen, Yuanyuan Ma, Yan Shi, Xin Yang, Liang Zhong, Nan Wu
Software Mentions: 1
Published: over 5 years ago
10.1016/j.celrep.2016.02.040
Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal AutophagyCited by: 56
Author(s): Tian Zhang, Shichen Shen, Jun Qu, Sina Ghaemmaghami
Software Mentions: 1
Published: over 10 years ago