Projects: cran: Andromeda
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda
Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: over 3 years ago
3 dependent packages
1,891 downloads last month
Enhanced Analysis
Educational Contributors:
msuchard@ucla.edu
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Repository Owner:
Observational Health Data Sciences and Informatics (organization)
Institutional
README Analysis:
Science Score: 85/100
Starting Score: 100 points
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+20
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1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution
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Non-science indicators
1 non-scientific terms found
Very Likely Science (85)
Papers Mentioning Andromeda 1,724
10.1371/journal.pone.0142162
A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung AdenocarcinomaCited by: 30
Author(s): Paul A. Stewart, Katja Parapatics, Eric A. Welsh, André C. Müller, Haoyun Cao, Bin Fang, John M. Koomen, Steven Eschrich, Keiryn L. Bennett, Eric B. Haura
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0091380
Identification of Protein Partners in Mycobacteria Using a Single-Step Affinity Purification MethodCited by: 20
Author(s): Przemysław Płociński, Daniel Laubitz, Dominik Cysewski, Krystian Stoduś, Katarzyna Kowalska, Andrzej Dziembowski
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0183908
Comparative quantitative proteomic analysis of disease stratified laser captured microdissected human islets identifies proteins and pathways potentially related to type 1 diabetesCited by: 25
Author(s): Julius O. Nyalwidhe, Wojciech J. Grzesik, Tanya C. Burch, Michele L. Semeraro, Tayab Waseem, Ivan Gerling, Raghavendra G. Mirmira, Margaret A. Morris, Jerry L. Nadler
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0147586
Proteome-Wide Identification of Lysine Succinylation in the Proteins of Tomato (Solanum lycopersicum)Cited by: 66
Author(s): Weibo Jin, Fuyong Wu
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0204522
Time-resolved proteomics of adenovirus infected cellsCited by: 16
Author(s): Alberto Valdés, Hongxing Zhao, Ulf Pettersson, Sara Bergström Lind
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0177871
BIRC6 mediates imatinib resistance independently of Mcl-1Cited by: 15
Author(s): Denis Okumu, Michael P. East, Merlin Levine, Laura E. Herring, Raymond Zhang, Samuel F. Gilbert, David W. Litchfield, Yanping Zhang, Lee M. Graves
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0116702
ABCE1 Is a Highly Conserved RNA Silencing SuppressorCited by: 15
Author(s): Kairi Kärblane, Jelena Gerassimenko, Lenne Nigul, Alla Piirsoo, Agata Smialowska, Kadri Vinkel, Per Kylsten, Karl Ekwall, Peter Swoboda, Erkki Truve, Cecilia Sarmiento
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0186806
Mass spectrometry-based quantification of the cellular response to ultraviolet radiation in HeLa cellsCited by: 4
Author(s): Hong Xu, Xuanyi Chen, Nanjiao Ying, Meixia Wang, Xin Xu, Rongyi Shi, Yuejin Hua
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0232585
Comparison of a human neuronal model proteome upon Japanese encephalitis or West Nile Virus infection and potential role of mosquito saliva in neuropathogenesisCited by: 4
Author(s): Benoît Besson, Justine Basset, Sandrine Gatellier, Hélène Chabrolles, Thibault Chaze, Véronique Hourdel, Mariette Matondo, Nathalie Pardigon, Valérie Choumet
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0094391
Analysis of Expressed Genes of the Bacterium ‘Candidatus Phytoplasma Mali’ Highlights Key Features of Virulence and MetabolismCited by: 28
Author(s): Christin Siewert, Toni Luge, Bojan Duduk, E. Seemüller, Carmen Büttner, Sascha Sauer, Michael Kube
Software Mentions: 1
Published: over 12 years ago
10.1186/s12864-019-5848-1
The difference in serum proteomes in schizophrenia and bipolar disorderCited by: 25
Author(s): L. Smirnova, A. Seregin, Irina S. Boksha, E. Yu. Dmitrieva, German G. Simutkin, E. Kornetova, Olga K. Savushkina, Anastasia Letova, Н. А. Бохан, Svetlana A. Ivanova, Victor G. Zgoda
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0206478
Protein variability in cerebrospinal fluid and its possible implications for neurological protein biomarker researchCited by: 25
Author(s): Lukas Schilde, Steffen Kösters, Simone Steinbach, Karin Schork, Martin Eisenacher, Sara Galozzi, Michael Turewicz, Katalin Barkovits, Brit Mollenhauer, Katrin Marcus, Caroline May
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0151764
Proteins in the Cocoon of Silkworm Inhibit the Growth of Beauveria bassianaCited by: 23
Author(s): Xiaomeng Guo, Zhaoming Dong, Yan Zhang, Youshan Li, Huawei Liu, Qingyou Xia, Ping Zhao
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0072951
Accurate LC Peak Boundary Detection for 16O/18O Labeled LC-MS DataCited by: 8
Author(s): Jian Cui, Konstantinos Pétritis, Tony Tegeler, Brianne Petritis, Xuepo Ma, Yufang Jin, Shou‐Jiang Gao, Jianqiu Michelle Zhang
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0198985
Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducksCited by: 14
Author(s): Yuqin Wu, Jianhui Li, Xuze Qin, Shiqiang Sun, Zhibin Xiao, Xiaoyu Dong, Muhammad Shahid, Dafei Yin, Jianmin Yuan
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2164-14-777
Urinary proteomic and non-prefractionation quantitative phosphoproteomic analysis during pregnancy and non-pregnancyCited by: 35
Author(s): Jianhua Zheng, Liguo Liu, Jin Wang, Qi Jin
Software Mentions: 1
Published: almost 13 years ago
10.3390/cancers12030685
Vitamin C Restricts the Emergence of Acquired Resistance to EGFR-Targeted Therapies in Colorectal CancerCited by: 39
Author(s): Annalisa Lorenzato, Alessandro Magrì, Vittoria Matafora, Valentina Audrito, Pamela Arcella, Luca Lazzari, Monica Montone, Simona Lamba, Silvia Deaglio, Salvatore Siena, Andrea Bertotti, Livio Trusolino, Ángela Bachi, Federica Di Nicolantonio, Alberto Bardelli, Sabrina Arena
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers12113443
Metabolic Plasticity Is an Essential Requirement of Acquired Tyrosine Kinase Inhibitor Resistance in Chronic Myeloid LeukemiaCited by: 4
Author(s): Miriam G. Contreras Mostazo, Nina Kurrle, Marta Casado, Dominik C. Fuhrmann, Islam Alshamleh, Björn Häupl, Paloma Martı́n-Sanz, Bernhard Brüne, Hubert Serve, Harald Schwalbe, Frank Schnütgen, Silvia Marín, Marta Cascante
Software Mentions: 1
Published: almost 6 years ago
10.3390/cancers12092383
Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic ProfilingCited by: 9
Author(s): Misol Do, Hongbeom Kim, Dongyoon Shin, Joonho Park, Haeryoung Kim, Youngmin Han, Jin Young Jang, Youngsoo Kim
Software Mentions: 1
Published: about 6 years ago
10.3390/cancers12061371
Progression-Dependent Altered Metabolism in Osteosarcoma Resulting in Different Nutrient Source DependenciesCited by: 9
Author(s): Raphaela Fritsche‐Guenther, Yoann Gloaguen, Marieluise Kirchner, Philipp Mertins, Per‐Ulf Tunn, Jennifer Kirwan
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-019-6227-7
Comparative acetylome analysis reveals the potential roles of lysine acetylation for DON biosynthesis in Fusarium graminearumCited by: 13
Author(s): Shanyue Zhou, Chunlan Wu
Software Mentions: 1
Published: almost 7 years ago
10.3390/cancers13143404
Tyrosine Phosphoproteomics of Patient-Derived Xenografts Reveals Ephrin Type-B Receptor 4 Tyrosine Kinase as a Therapeutic Target in Pancreatic CancerCited by: 2
Author(s): Santosh Renuse, Vijay Sagar Madamsetty, Dong-Gi Mun, Anil K. Madugundu, Smrita Singh, Savita Udainiya, Kiran K. Mangalaparthi, Min‐Sik Kim, Ren Liu, Sunil Kumar, Valery Krasnoperov, Mark J. Truty, Rondell P. Graham, Parkash S. Gill, Debabrata Mukhopadhyay, Akhilesh Pandey
Software Mentions: 1
Published: about 5 years ago
10.3390/cancers13010062
The Extracellular Bone Marrow Microenvironment—A Proteomic Comparison of Constitutive Protein Release by In Vitro Cultured Osteoblasts and Mesenchymal Stem CellsCited by: 14
Author(s): Elise Aasebø, Even Birkeland, Frode Selheim, Frode S. Berven, Annette K. Brenner, Øystein Bruserud
Software Mentions: 1
Published: over 5 years ago