Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: AmyloGram

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/AmyloGram

Prediction of Amyloid Proteins
2 versions
Latest release: almost 7 years ago
181 downloads last month

Papers Mentioning AmyloGram 8

10.1038/s41598-020-64270-3

PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Cited by: 17
Author(s): Jakub W Wojciechowski, Małgorzata Kotulska
Software Mentions: 4
Published: over 4 years ago

Amyloidogenic motifs revealed by n-gram analysis
Cited by: 40
Author(s): Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms22105127

Variability of Amyloid Propensity in Imperfect Repeats of CsgA Protein of Salmonella enterica and Escherichia coli
Cited by: 7
Author(s): Natalia Szulc, Marlena Gąsior-Głogowska, Jakub W Wojciechowski, Monika Szefczyk, Andrzej Żak, Michał Burdukiewicz, Małgorzata Kotulska
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.00532

On the Conformational Dynamics of β-Amyloid Forming Peptides: A Computational Perspective
Cited by: 17
Author(s): Konda Mani Saravanan, Haiping Zhang, Huiling Zhang, Wenhui Xi, Yanjie Wei
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-021-04139-y

Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars
Cited by: 1
Author(s): Witold Dyrka, Marlena Gąsior-Głogowska, Monika Szefczyk, Natalia Szulc
Software Mentions: 2
Published: over 3 years ago

10.1002/2211-5463.13213

Prion‐like proteins: from computational approaches to proteome‐wide analysis
Cited by: 12
Author(s): Marcos Gil-García, Valentín Iglesias, Irantzu Pallarés, Salvador Ventura
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-86530-6

Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data
Cited by: 2
Author(s): Natalia Szulc, Michał Burdukiewicz, Marlena Gąsior-Głogowska, Jakub W Wojciechowski, Jarosław Chilimoniuk, Dorota Mackiewicz, Tomas Šneideris, Vytautas Smirnovas, Małgorzata Kotulska
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02729

The Sheaths of Methanospirillum Are Made of a New Type of Amyloid Protein
Cited by: 12
Author(s): Line Friis Bakmann Christensen, Lonnie Maria Hansen, Kai Finster, Gunna Christiansen, Per Halkjær Nielsen, Daniel E. Otzen, Morten Simonsen Dueholm
Software Mentions: 1
Published: almost 6 years ago