Ecosyste.ms: Papers

10.1186/1745-6215-12-212

Assessment of data quality in an international multi-centre randomised trial of coronary artery surgery
Cited by: 5
Author(s): Łukasz J. Krzych, Belinda Lees, Fiona Nugara, Winston Banya, Andrzej Bochenek, Jo Cook, David P. Taggart, Marcus Flather
Software Mentions: 1
Published: about 13 years ago

10.1186/1745-6215-13-153

Rationale, study design, and analysis plan of the Alveolar Recruitment for ARDS Trial (ART): Study protocol for a randomized controlled trial
Cited by: 27
Author(s): Art Investigators
Software Mentions: 1
Published: about 12 years ago

10.3390/tropicalmed4020089

Artemisinin-Based Antimalarial Drug Therapy: Molecular Pharmacology and Evolving Resistance
Cited by: 31
Author(s): Laura E. Heller, Paul D. Roepe
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00191-16

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Cited by: 1,119
Author(s): Amir Almasi‐Hashiani, Daniel McDonald, José A. Navas-Molina, Evguenia Kopylova, James T. Morton, Zhenjiang Zech Xu, Eric P. Kightley, Luke R. Thompson, Embriette R. Hyde, Antonio González, Rob Knight
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00074-17

Parallel Evolution of Group B <i>Streptococcus</i> Hypervirulent Clonal Complex 17 Unveils New Pathoadaptive Mutations
Cited by: 27
Author(s): Alexandre Almeida, Isabelle Rosinski‐Chupin, Céline Plainvert, Pierre-Emmanuel Douarre, Maria José Borrego, Claire Poyart, Philippe Glaser
Software Mentions: 1
Published: about 7 years ago

10.5402/2012/804127

Complementary and Alternative Therapies for Pediatric Attention Deficit Hyperactivity Disorder: A Descriptive Review
Cited by: 21
Author(s): H. Russell Searight, Kayla Robertson, Todd Smith, Scott Perkins, Barbara K. Searight
Software Mentions: 1
Published: almost 12 years ago

10.1107/S205225251600943X

Three-dimensional nanostructure determination from a large diffraction data set recorded using scanning electron nanodiffraction
Cited by: 25
Author(s): Yifei Meng, Jian‐Min Zuo
Software Mentions: 1
Published: over 8 years ago

10.1155/2015/197895

A New Binning Method for Metagenomics by One-Dimensional Cellular Automata
Cited by: 0
Author(s): Yen-Ting Lin
Software Mentions: 1
Published: almost 10 years ago

10.18502/ijrm.v13i11.7962

Outcome of mock embryo transfer before the first IVF cycle: A randomized control trial
Cited by: 2
Author(s): Amol A Borkar, Amit Shah, Anil Gudi, Roy Homburg
Software Mentions: 1
Published: almost 4 years ago

10.1167/iovs.61.4.47

Retinal Structure in<i>RPE65</i>-Associated Retinal Dystrophy
Cited by: 23
Author(s): Neruban Kumaran, Michalis Georgiou, James Bainbridge, Mette Bertelsen, Michael Larsen, Fiona Blanco‐Kelly, Carmen Ayuso, Hoai Viet Tran, Francis L. Munier, Angelos Kalitzeos, Michel Michaelides
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph14080882

A Diagnostic Post-Occupancy Evaluation of the Nacadia® Therapy Garden
Cited by: 14
Author(s): Ulrik Sidenius, Patrik Karlsson Nyed, Victoria Linn Lygum, Ulrika K. Stigsdotter
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph15102199

Extension of the Advanced REACH Tool (ART) to Include Welding Fume Exposure
Cited by: 8
Author(s): Aduldatch Sailabaht, Fan Wang, John W. Cherrie
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph16020293

Restorative Effects of Classroom Soundscapes on Children’s Cognitive Performance
Cited by: 28
Author(s): Shan Shu, Hui Ma
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijerph16071284

Going beyond Quietness: Determining the Emotionally Restorative Effect of Acoustic Environments in Urban Open Public Spaces
Cited by: 27
Author(s): Karmele Herranz-Pascual, Itziar Aspuru, Ioseba Iraurgi, Álvaro Santander, José Luis Eguiguren, Igone García
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph16081456

Relation between Psychological Restorativeness and Lifestyle, Quality of Life, Resilience, and Stress-Coping in Forest Settings
Cited by: 33
Author(s): Nobuki Takayama, Takeshi Morikawa, Ernest Bielinis
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph16183373

A Smartphone App for Improving Mental Health through Connecting with Urban Nature
Cited by: 69
Author(s): Kirsten McEwan, Miles Richardson, David Sheffield, Fiona J. Ferguson, Paul J Brindley
Software Mentions: 1
Published: about 5 years ago

10.3390/ijerph16224413

Wetlands for Wellbeing: Piloting a Nature-Based Health Intervention for the Management of Anxiety and Depression
Cited by: 55
Author(s): Phoebe R. Maund, Katherine N. Irvine, Jonathan Reeves, Emily Strong, Ruth Cromie, Martin Dallimer, Zoe G. Davies
Software Mentions: 1
Published: about 5 years ago

10.3390/ijerph17093266

Measures to Promote Rural Healthcare Tourism with a Scientific Evidence-Based Approach
Cited by: 14
Author(s): Da-Wou Joung, Bo-Hwi Lee, Jeongdo Lee, Changjun Lee, Seungmo Koo, Changwon Park, Se-Bin Kim, Takahide Kagawa, Bum-Jin Park
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph17103368

The Wildman Programme. A Nature-Based Rehabilitation Programme Enhancing Quality of Life for Men on Long-Term Sick Leave: Study Protocol for a Matched Controlled Study In Denmark
Cited by: 6
Author(s): Simon Høegmark, Tonny Elmose Andersen, Patrik Grahn, Kirsten Kaya Roessler
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph17124486

Evaluation of Stoffenmanager and a New Exposure Model for Estimating Occupational Exposure to Styrene in the Fiberglass Reinforced Plastics Lamination Process
Cited by: 4
Author(s): Seok-Won Lee, Sangjun Choi, Kyung Ho Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph17176220

New-Generation Washing Agents in Remediation of Metal-Polluted Soils and Methods for Washing Effluent Treatment: A Review
Cited by: 30
Author(s): Zygmunt M. Gusiatin, Dorota Kulikowska, Barbara Klik
Software Mentions: 1
Published: about 4 years ago

10.3390/ijerph17186792

Proposing a Framework for the Restorative Effects of Nature through Conditioning: Conditioned Restoration Theory
Cited by: 28
Author(s): Lars Even Egner, Stefan Sütterlin, Giovanna Calogiuri
Software Mentions: 1
Published: about 4 years ago

10.3390/ijerph18020509

The Effects of Urban Natural Environments on Preference and Self-Reported Psychological Restoration of the Elderly
Cited by: 9
Author(s): Ling Qiu, Qujing Chen, Tian Gao
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph18168731

The Psychological Restorative Effects of Campus Environments on College Students in the Context of the COVID-19 Pandemic: A Case Study at Northwest A&amp;F University, Shaanxi, China
Cited by: 14
Author(s): Siyun Sun, Yingyuan Chen, Sen Mu, Bo Jiang, Yiwei Lin, Tian Gao, Ling Qiu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18179053

Effect of a Virtual Reality-Based Restorative Environment on the Emotional and Cognitive Recovery of Individuals with Mild-to-Moderate Anxiety and Depression
Cited by: 25
Author(s): Hongqidi Li, Wenyi Dong, Zhimeng Wang, Nuo Chen, Jianping Wu, Guangxin Wang, Ting Jiang
Software Mentions: 1
Published: about 3 years ago

10.1002/jia2.25617

Time‐varying age‐ and CD4‐stratified rates of mortality and WHO stage 3 and stage 4 events in children, adolescents and youth 0 to 24 years living with perinatally acquired HIV, before and after antiretroviral therapy initiation in the paediatric IeDEA Global Cohort Consortium
Cited by: 8
Author(s): Sophie Desmonde, Anne M Neilan, Beverly Musick, Gabriela Patten, Kulkanya Chokephaibulkit, Andrew Edmonds, Stephany N. Duda, Karen Malateste, Kara Wools‐Kaloustian, Andrea Ciaranello, Mary‐Ann Davies, Valériane Leroy, IeDEA
Software Mentions: 1
Published: about 4 years ago

10.1002/jia2.25734

Cognitive outcomes at ages seven and nine years in South African children from the children with HIV early antiretroviral (CHER) trial: a longitudinal investigation
Cited by: 8
Author(s): Kaylee S. van Wyhe, Barbara Laughton, Mark F. Cotton, Ernesta M. Meintjes, André J van der Kouwe, Michael J. Boivin, Martin Kidd, Kevin G. F. Thomas
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.12345

A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation
Cited by: 72
Author(s): Andreu Viader, Daisuke Ogasawara, Christopher M. Joslyn, Manuel Sánchez-Alavez, Simone Mori, William Nguyen, Bruno Conti, Benjamin F. Cravatt
Software Mentions: 1
Published: almost 9 years ago

10.2196/16106

Understanding How Virtual Reality Can Support Mindfulness Practice: Mixed Methods Study
Cited by: 76
Author(s): Elizabeth Seabrook, Ryan Kelly, Fiona Foley, Stephen Theiler, Neil Thomas, Greg Wadley, Maja Nedeljkovic
Software Mentions: 1
Published: over 4 years ago

10.1155/2010/407236

On-Line Adaptive Radiation Therapy: Feasibility and Clinical Study
Cited by: 19
Author(s): Taoran Li, Xiaofeng Zhu, Danthai Thongphiew, William R. Lee, Željko Vujašković, Qiuwen Wu, Fang‐Fang Yin, Qiuwen Wu
Software Mentions: 1
Published: almost 15 years ago

10.18632/oncotarget.17385

Variable step size methods for solving simultaneous algebraic reconstruction technique (SART)-type CBCT reconstructions
Cited by: 5
Author(s): Heui Chang Lee, Byung Cheol Song, Jin Sung Kim, James J. Jung, H.Harold Li, Sasa Mutic, Justin C. Park
Software Mentions: 1
Published: over 7 years ago

10.1093/jrr/rrt045

Performance validation of deformable image registration in the pelvic region
Cited by: 29
Author(s): V. Zambrano, Hugo Furtado, Daniella Fabri, Carola Lütgendorf‐Caucig, J. Góra, Markus Stock, Ramona Mayer, Wolfgang Birkfellner, Dietmar Georg
Software Mentions: 1
Published: over 11 years ago

10.1186/1742-6405-9-36

Anti-infective treatment in HIV-infected patients during perioperative period
Cited by: 7
Author(s): Baochi Liu, Lei Zhang, Ruizhang Guo, Su Jing, Lei Li, Yingzhong Shen
Software Mentions: 1
Published: almost 13 years ago

10.1107/S160057751400825X

Developments in optics and performance at BL13-XALOC, the macromolecular crystallography beamline at the Alba Synchrotron
Cited by: 160
Author(s): Judith Juanhuix, F. Gil-Ortiz, Guifré Cuní, Carles Colldelram, Josep Nicolás, Julio Lidón, E. Boter, Claude Ruget, S. Ferrer, J. Benach
Software Mentions: 1
Published: over 10 years ago

10.1155/2015/148769

Predictors of Mortality among Adult Antiretroviral Therapy Users in Southeastern Ethiopia: Retrospective Cohort Study
Cited by: 24
Author(s): Tesfaye Setegn, Abulie Takele, Tesfaye Gizaw, Dabere Nigatu, Demewoz Haile
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.aap.2018.04.007

Why do drivers become safer over the first three months of driving? A longitudinal qualitative study
Cited by: 21
Author(s): Marianne Day, Andrew R. Thompson, Damian Poulter, Chris Stride, Richard Rowe
Software Mentions: 1
Published: over 6 years ago

10.1007/s00592-020-01504-w

Baseline SD-OCT characteristics of diabetic macular oedema patterns can predict morphological features and timing of recurrence in patients treated with dexamethasone intravitreal implants
Cited by: 5
Author(s): Chiara M. Eandi, Daniele De Geronimo, Daniela Giannini, Maria Sole Polito, Gian Marco Tosi, Giovanni Neri, Y. Le Mer, Monica Varano, Mariacristina Parravano
Software Mentions: 1
Published: over 4 years ago

10.1007/s10459-021-10045-y

Differences in empathy toward patients between medical and nonmedical students: an fMRI study
Cited by: 2
Author(s): Shin Ah Kim, Young-Mee Lee, Stephan Hamann, Sang Hee Kim
Software Mentions: 1
Published: over 3 years ago

10.5334/aogh.2626

The Effects of Live-Fire Drills on Visual and Auditory Cognitive Performance among Firefighters
Cited by: 10
Author(s): Rasoul Hemmatjo, Mohammad Hajaghazadeh, Teimour Allahyari, Sajad Zare, Reza Kazemi
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13756-018-0352-y

Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014
Cited by: 83
Author(s): Laura Becker, Martin Kaase, Yvonne Pfeifer, Stephan Fuchs, Annicka Reuß, Anja von Laer, Muna Abu Sin, Miriam Korte-Berwanger, Sören Gatermann, Guido Werner
Software Mentions: 1
Published: over 6 years ago

10.1007/s00253-019-09961-2

Amino acid secretion influences the size and composition of copper carbonate nanoparticles synthesized by ureolytic fungi
Cited by: 37
Author(s): Feixue Liu, László Csetényi, Geoffrey Michael Gadd
Software Mentions: 1
Published: over 5 years ago

10.22038/aojnmb.2017.8708

Development and Evaluation of Image Reconstruction Algorithms for a Novel Desktop SPECT System.
Cited by: 1
Author(s): Navid Zeraatkar, Arman Rahmim, Saeed Sarkar, Mohammad Reza Ay
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-017-1464-8

Pysim-sv: a package for simulating structural variation data with GC-biases
Cited by: 17
Author(s): Yuchao Xia, Yun Liu, Minghua Deng, Ruibin Xi
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-14-S11-S7

An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads
Cited by: 2
Author(s): Julia Warnke, Hesham Ali
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-14-184

Benchmarking short sequence mapping tools
Cited by: 187
Author(s): Ayat Hatem, Doruk Bozdağ, Amanda E. Toland, Ümit V. Çatalyürek
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-15-163

Population genetic analysis of bi-allelic structural variants from low-coverage sequence data with an expectation-maximization algorithm
Cited by: 7
Author(s): José Ignacio Lucas-Lledó, David Vicente-Salvador, Cristina Aguado, Mario Cáceres
Software Mentions: 1
Published: over 10 years ago

10.1186/s12859-018-2424-7

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations
Cited by: 2
Author(s): Thomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-018-2307-y

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly
Cited by: 8
Author(s): Renato R. M. Oliveira, Gisele Nunes, Talvâne G. L. Lima, Guilherme Oliveira, Ronnie Alves
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-020-3533-7

TAMA: improved metagenomic sequence classification through meta-analysis
Cited by: 2
Author(s): Mikang Sim, Jongin Lee, Daehwan Lee, Daehong Kwon, Jaebum Kim
Software Mentions: 1
Published: over 4 years ago

10.1186/s12859-020-03779-w

RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads
Cited by: 4
Author(s): Xingyu Liao, Xin Gao, Tingjun Zhang, Fang‐Xiang Wu, Jianxin Wang
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-016-1434-6

Accelerating metagenomic read classification on CUDA-enabled GPUs
Cited by: 9
Author(s): Robin Kobus, Christian Hundt, André C. Müller, Bertil Schmidt
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-017-1821-7

Detection and quantification of mitochondrial DNA deletions from next-generation sequence data
Cited by: 28
Author(s): Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould, Thomas LaFramboise
Software Mentions: 1
Published: about 7 years ago

10.1186/s12859-019-2928-9

Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data
Cited by: 42
Author(s): Manojkumar Kumaran, S. Umadevi, Bharanidharan Devarajan
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-14-355

Viral quasispecies inference from 454 pyrosequencing
Cited by: 7
Author(s): Wan-Ting Poh, Eryu Xia, Kwanrutai Chin-inmanu, Lai-Ping Wong, Anthony Cheng, Prida Malasit, Prapat Suriyaphol, Yik-Ying Teo, Rick Twee‐Hee Ong
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-015-0632-y

A composite genome approach to identify phylogenetically informative data from next-generation sequencing
Cited by: 25
Author(s): Rachel S. Schwartz, Kelly M. Harkins, Anne C. Stone, Reed A. Cartwright
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-14-13

FUSIM: a software tool for simulating fusion transcripts
Cited by: 18
Author(s): Andrew E. Bruno, Jeffrey C. Miecznikowski, Maochun Qin, Jianmin Wang, Song Liu
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12859-017-1941-0

Decontaminating eukaryotic genome assemblies with machine learning
Cited by: 17
Author(s): Janna L. Fierst, Duncan Murdock
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12859-020-03740-x

Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fields
Cited by: 2
Author(s): Aranka Steyaert, Pieter Audenaert, Jan Fostier
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-015-0595-z

BioMaS: a modular pipeline for Bioinformatic analysis of Metagenomic AmpliconS
Cited by: 47
Author(s): Bruno Fosso, Mónica Santamaría, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Giacinto Donvito, A. Monaco, Pasquale Notarangelo, Graziano Pesole
Software Mentions: 1
Published: over 9 years ago

10.1186/s12859-019-3205-7

Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage
Cited by: 20
Author(s): Anna-Katharina Lau, Svenja Dörrer, Chris-André Leimeister, Christoph Bleidorn, Burkhard Morgenstern
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2105-15-149

FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses
Cited by: 10
Author(s): Sarah Killcoyne, Antonio del Sol
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2148-9-27

Convergent and divergent patterns of morphological differentiation provide more evidence for reproductive character displacement in a wood cricket Gryllus fultoni(Orthoptera: Gryllidae)
Cited by: 14
Author(s): Yikweon Jang, Yong Jin Won, Jae Chun Choe
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-018-5329-y

Microsatellite development from genome skimming and transcriptome sequencing: comparison of strategies and lessons from frog species
Cited by: 13
Author(s): Yun Xia, Wei Luo, Siqi Yuan, Yawen Zheng, Xiaomao Zeng
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-5001-6

New insights into phylogeography of worldwide Brucella canis isolates by comparative genomics-based approaches: focus on Brazil
Cited by: 9
Author(s): Acácia Ferreira Vicente, Guillaume Girault, Yannick Corde, Mateus Souza Ribeiro Mioni, Lara Borges Keid, Maryne Jaÿ, Jane Megid, Virginie Mick
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-5272-y

Mining statistically-solid k-mers for accurate NGS error correction
Cited by: 11
Author(s): Liang Zhao, Jin Xie, Lin Bai, Wen Chen, Mingju Wang, Zhonglei Zhang, Yiqi Wang, Zhe Zhao, Jinyan Li
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-6486-3

QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data
Cited by: 24
Author(s): Christine Anyansi, Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-015-2050-y

VariantMetaCaller: automated fusion of variant calling pipelines for quantitative, precision-based filtering
Cited by: 23
Author(s): András Gézsi, Bence Bolgár, Peter W. Marx, Péter Sárközy, Csaba Szalai, Péter Antal
Software Mentions: 1
Published: about 9 years ago

10.1186/1472-6963-8-240

Building capacity for antiretroviral delivery in South Africa: A qualitative evaluation of the PALSA PLUS nurse training programme
Cited by: 55
Author(s): J Stein, Simon Lewin, Lara Fairall, Pat Mayers, René English, Angeni Bheekie, Eric D. Bateman, Merrick Zwarenstein
Software Mentions: 1
Published: about 16 years ago

10.1186/s12879-016-1520-4

Potential impact of multiple interventions on HIV incidence in a hyperendemic region in Western Kenya: a modelling study
Cited by: 18
Author(s): Stéphanie Blaizot, David Maman, Benjamin Riche, Irene Mukui, Beatrice Kirubi, René Écochard, Jean-François Étard
Software Mentions: 1
Published: over 8 years ago

10.1186/s12879-015-1089-3

Effect of isoniazid preventive therapy on tuberculosis or death in persons with HIV: a retrospective cohort study
Cited by: 25
Author(s): Henok Tadesse Ayele, Maaike S. M. van Mourik, Marc J. M. Bonten
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6920-12-113

Using Audience Response Technology to provide formative feedback on pharmacology performance for non-medical prescribing students - a preliminary evaluation
Cited by: 10
Author(s): A Mostyn, Oonagh Meade, Joanne Lymn
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2288-13-152

Restricted mean survival time: an alternative to the hazard ratio for the design and analysis of randomized trials with a time-to-event outcome
Cited by: 570
Author(s): Patrick Royston, Mahesh Parmar
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12882-018-0964-8

Survival of HIV infected patients on maintenance hemodialysis in Cameroon: a comparative study
Cited by: 8
Author(s): Marie Patrice Halle, Anais Mfoula Edjomo, Hermine Fouda, Hilaire Djantio, Noël Emmanuel Essomba, Gloria Ashuntantang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2202-13-76

Infrared optical imaging of matrix metalloproteinases (MMPs) up regulation following ischemia reperfusion is ameliorated by hypothermia
Cited by: 31
Author(s): Philip A. Barber, David Rushforth, Smriti Agrawal, Ursula I. Tuor
Software Mentions: 1
Published: over 12 years ago

10.1186/s12886-015-0028-9

Repeatability and reproducibility of applanation resonance tonometry: a cross-sectional study
Cited by: 10
Author(s): Laura Ottobelli, Paolo Fogagnolo, Paolo Frezzotti, Stefano De Cillà, Elena Vallenzasca, Maurizio Digiuni, Ruggiero Paderni, Ilaria Motolese, Simone Alex Bagaglia, Eduardo Motolese, Luca Rossetti
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6793-14-4

Sympathoactivation and rho-kinase-dependent baroreflex function in experimental renovascular hypertension with reduced kidney mass
Cited by: 11
Author(s): Rainer U. Pliquett, Sebastian Benkhoff, Ok‐Sang Jung, Ralf P. Brandes
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-244X-14-20

Reducing symptoms of major depressive disorder through a systematic training of general emotion regulation skills: protocol of a randomized controlled trial
Cited by: 19
Author(s): Anna M. Ehret, Judith Kowalsky, Winfried Rief, Wolfgang Hiller, Matthias Berking
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12888-017-1324-0

From the neurobiological basis of comorbid alcohol dependence and depression to psychological treatment strategies: study protocol of a randomized controlled trial
Cited by: 17
Author(s): Alena Becker, Anna M. Ehret, Peter Kirsch
Software Mentions: 1
Published: over 7 years ago

10.1186/1756-0500-7-698

SNPest: a probabilistic graphical model for estimating genotypes
Cited by: 6
Author(s): Stinus Lindgreen, Anders Krogh, Jakob Skou Pedersen
Software Mentions: 1
Published: about 10 years ago

10.1186/s12917-021-02833-w

New Brucella variant isolated from Croatian cattle
Cited by: 3
Author(s): Silvio Špičić, Maja Zdelar-Tuk, Claire Ponsart, René S. Hendriksen, Irena Reil, Guillaume Girault, Pimlapas Leekitcharoenphon, Vesna Rukavina, Martina Rubin, Luca Freddi, Sanja Duvnjak
Software Mentions: 1
Published: over 3 years ago

10.1186/1746-6148-9-197

Urodynamic investigation by telemetry in Beagle dogs: validation and effects of oral administration of current urological drugs: a pilot study
Cited by: 10
Author(s): Stéphanie Noël, L Massart, Annick Hamaide
Software Mentions: 1
Published: about 11 years ago

10.1186/s12610-016-0044-5

Mammalian sperm nuclear organization: resiliencies and vulnerabilities
Cited by: 46
Author(s): Alexandre Champroux, J. Torres-Carreira, Parviz Gharagozloo, Joël R. Drevet, Ayhan Kocer
Software Mentions: 1
Published: almost 8 years ago

10.3390/bs2020115

Brief Treatment of Symptoms of Post-Traumatic Stress Disorder (PTSD) by Use of Accelerated Resolution Therapy (ART®)
Cited by: 33
Author(s): Kevin E. Kip, Carrie A. Elk, Kelly L. Sullivan, Rajendra Kadel, Cecile A. Lengacher, Christopher J. Long, Laney Rosenzweig, Amy Shuman, Diego Hernández, Jennifer D. Street, Sue Ann Girling, David M. Diamond
Software Mentions: 1
Published: over 12 years ago

10.3390/bs10110170

Brain Activations and Functional Connectivity Patterns Associated with Insight-Based and Analytical Anagram Solving
Cited by: 2
Author(s): Д. О. Синицын, Ilya S. Bakulin, A. Poydasheva, L. Legostaeva, Е. И. Кремнева, Dmitry Yu. Lagoda, A. Yu. Chernyavskiy, Alexey A. Medyntsev, Н. А. Супонева, Michael А. Piradov
Software Mentions: 1
Published: about 4 years ago

10.1093/bioinformatics/btaa059

Bivartect: accurate and memory-saving breakpoint detection by direct read comparison
Cited by: 4
Author(s): Keisuke Shimmura, Yuki Kato, Yukio Kawahara
Software Mentions: 1
Published: almost 5 years ago

10.1093/bioinformatics/btt593

PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Cited by: 3,110
Author(s): Jiajie Zhang, Kassian Kobert, Tomasÿ Flouri, Alexandros Stamatakis
Software Mentions: 1
Published: about 11 years ago

10.1186/1475-925X-13-65

An iterative tomosynthesis reconstruction using total variation combined with non-local means filtering
Cited by: 21
Author(s): Metin Ertaş, İsa Yıldırım, Mustafa E. Kamasak, Aydın Akan
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-925X-12-112

Digital breast tomosynthesis image reconstruction using 2D and 3D total variation minimization
Cited by: 38
Author(s): Metin Ertaş, İsa Yıldırım, Mustafa E. Kamasak, Aydın Akan
Software Mentions: 1
Published: about 11 years ago

10.1186/1475-925X-11-44

Bone-induced streak artifact suppression in sparse-view CT image reconstruction
Cited by: 17
Author(s): Seung Oh Jin, Jae Gon Kim, Soo Yeol Lee, Oh‐Kyong Kwon
Software Mentions: 1
Published: over 12 years ago

10.1155/2016/3094698

An Improved Total Variation Minimization Method Using Prior Images and Split-Bregman Method in CT Reconstruction
Cited by: 7
Author(s): Luzhen Deng, Peng Feng, Mianyi Chen, Peng He, Biao Wei
Software Mentions: 1
Published: almost 9 years ago

10.1155/2017/6482567

A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy
Cited by: 23
Author(s): Carlos Óscar S. Sorzano, Javier Vargas, Joaquı́n Otón, J.M. de la Rosa-Trevín, José Luis Vilas, Mohammad Kazemi, Roberto Melero, Laura del Caño, J. Cuenca, Pablo Conesa, J. Gómez-Blanco, Roberto Marabini, José Marı́a Carazo
Software Mentions: 1
Published: almost 8 years ago

10.1186/1751-0759-8-4

Acupuncture therapy: mechanism of action, efficacy, and safety: a potential intervention for psychogenic disorders?
Cited by: 117
Author(s): Kenji Kawakita, Kaoru Okada
Software Mentions: 1
Published: almost 11 years ago

10.1017/S0007114520003529

Obesity, COVID-19 and innate immunometabolism
Cited by: 21
Author(s): Laura E. Gleeson, Helen M. Roche, Frederick J. Sheedy
Software Mentions: 1
Published: about 4 years ago

10.1002/brb3.1363

Test–retest reproducibility of a multi‐atlas automated segmentation tool on multimodality brain MRI
Cited by: 19
Author(s): Thiago Junqueira Ribeiro de Rezende, Brunno M. Campos, Johnny Hsu, Yue Li, Can Ceritoglu, Kwame S. Kutten, Marcondes C. França, Susumu Mori, Michael I. Miller, Andréia V. Faria
Software Mentions: 1
Published: about 5 years ago

10.1002/brb3.219

BOLD signal and functional connectivity associated with loving kindness meditation
Cited by: 60
Author(s): Kathleen A. Garrison, Linda C. Mayes, R. Todd Constable, Judson A. Brewer
Software Mentions: 1
Published: almost 11 years ago

10.1002/brb3.1705

Reproducibility of graph measures at the subject level using resting‐state fMRI
Cited by: 11
Author(s): Qian Ran, Tarik Jamoulle, Jolien Schaeverbeke, Karen Meersmans, Rik Vandenberghe, Patrick Dupont
Software Mentions: 1
Published: over 4 years ago

10.1002/brb3.664

Relation between patterns of intrinsic network connectivity, cognitive functioning, and symptom presentation in trauma-exposed patients with major depressive disorder
Cited by: 13
Author(s): Melissa Parlar, Maria Densmore, Geoffrey B. Hall, Paul A. Frewen, Ruth A. Lanius, Margaret C. McKinnon
Software Mentions: 1
Published: over 7 years ago

10.1002/brb3.1207

Altered functional connectivity in binge eating disorder and bulimia nervosa: A resting‐state fMRI study
Cited by: 34
Author(s): Marion A. Stopyra, Joe J. Simon, Mandy Skunde, Stephan Walther, Martin Bendszus, Wolfgang Herzog, Hans‐Christoph Friederich
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00429-021-02255-2

Neural patterns of word processing differ in children with dyslexia and isolated spelling deficit
Cited by: 1
Author(s): Agnieszka Dębska, Chiara Banfi, Katarzyna Chyl, Gabriela Dzięgiel-Fivet, Agnieszka Kacprzak, Magdalena Łuniewska, Joanna Plewko, Anna Grabowska, Karin Landerl, Katarzyna Jednoróg
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2875-12-118

Artemisinin resistance in rodent malaria - mutation in the AP2 adaptor μ-chain suggests involvement of endocytosis and membrane protein trafficking
Cited by: 53
Author(s): Gisela Henriques, Axel Martinelli, Louise Rodrigues, Katarzyna Modrzynska, R.H. Fawcett, Douglas R. Houston, Sofia Trindade Borges, Umberto D’Alessandro, Halidou Tinto, Corine Karema, Paul Hunt, Pedro Vitor Lemos Cravo
Software Mentions: 1
Published: over 11 years ago