bioconductor projects 1,374
Very Likely Science (100)
Very Likely Science (90)
Very Likely Science (100)
bioconductor: ffpe
Quality assessment and control for FFPE microarray expression dataPapers that mentioned: 2
Very Likely Science (100)
bioconductor: flowCut
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence AnalysisPapers that mentioned: 2
Very Likely Science (85)
bioconductor: gaga
GaGa hierarchical model for high-throughput data analysisPapers that mentioned: 2
Very Likely Science (75)
bioconductor: loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLsPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (100)
bioconductor: GeneExpressionSignature
Gene Expression Signature based Similarity MetricPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (90)
bioconductor: apComplex
Estimate protein complex membership using AP-MS protein dataPapers that mentioned: 2
Very Likely Science (98)
bioconductor: GenomicScores
Infrastructure to work with genomewide position-specific scoresPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (75)
bioconductor: ggtreeExtra
An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"Papers that mentioned: 2
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: affyILM
Linear Model of background subtraction and the Langmuir isothermPapers that mentioned: 2
Very Likely Science (90)
bioconductor: goSTAG
A tool to use GO Subtrees to Tag and Annotate Genes within a setPapers that mentioned: 2
Very Likely Science (98)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: HiLDA
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocationPapers that mentioned: 2
Very Likely Science (100)
bioconductor: affyPara
Papers that mentioned: 2
Unlikely Science (0)
bioconductor: twoddpcr
Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting moleculesPapers that mentioned: 2
Very Likely Science (100)
bioconductor: TSRchitect
Papers that mentioned: 2
Unlikely Science (0)
bioconductor: SwimR
Papers that mentioned: 2
Unlikely Science (0)
Very Likely Science (100)
bioconductor: sparseDOSSA
Sparse Data Observations for Simulating Synthetic AbundancePapers that mentioned: 2
Very Likely Science (90)
bioconductor: BiocWorkflowTools
Tools to aid the development of Bioconductor Workflow packagesPapers that mentioned: 2
Very Likely Science (75)
Very Likely Science (75)
Very Likely Science (90)
bioconductor: scMAGeCK
Papers that mentioned: 2
Unlikely Science (0)
bioconductor: CGEN
An R package for analysis of case-control studies in genetic epidemiologyPapers that mentioned: 2
Very Likely Science (93)
bioconductor: ClusterSignificance
The ClusterSignificance package provides tools to assess if class clusters in dimensionality reduced data representations have a separation different from permuted dataPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (98)
Very Likely Science (85)
bioconductor: ABAEnrichment
Papers that mentioned: 2
Unlikely Science (0)
Very Likely Science (90)
bioconductor: FLAMES
FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq dataPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (83)
bioconductor: icetea
Integrating Cap Enrichment with Transcript Expression AnalysisPapers that mentioned: 2
Very Likely Science (100)
bioconductor: FindMyFriends
Papers that mentioned: 2
Unlikely Science (0)
bioconductor: MoonlightR
Identify oncogenes and tumor suppressor genes from omics dataPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (98)
bioconductor: MetaVolcanoR
Gene Expression Meta-analysis Visualization ToolPapers that mentioned: 2
Very Likely Science (100)
bioconductor: immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow CytometryPapers that mentioned: 2
Very Likely Science (75)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP InputsPapers that mentioned: 2
Very Likely Science (98)
Very Likely Science (100)
bioconductor: GenoGAM
Papers that mentioned: 2
Unlikely Science (0)
bioconductor: methylCC
Estimate the cell composition of whole blood in DNA methylation samplesPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (100)
bioconductor: miRspongeR
Identification and analysis of miRNA sponge regulationPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (75)
Very Likely Science (100)
Very Likely Science (75)
bioconductor: R453Plus1Toolbox
A package for importing and analyzing data from Roche's Genome Sequencer SystemPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (100)
bioconductor: R3CPET
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet ProcessPapers that mentioned: 1
Very Likely Science (100)
bioconductor: GladiaTOX
R Package for Processing High Content Screening dataPapers that mentioned: 1
Very Likely Science (75)
bioconductor: BiocPkgTools
Collection of simple tools for learning about Bioconductor PackagesPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MineICA
Analysis of an ICA decomposition obtained on genomics dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: GCSscore
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arraysPapers that mentioned: 1
Very Likely Science (78)
bioconductor: RTNsurvival
Survival analysis using transcriptional networks inferred by the RTN packagePapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (75)
bioconductor: soGGi
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic IntervalsPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (100)
Very Likely Science (100)
bioconductor: cBioPortalData
Exposes and makes available data from the cBioPortal web resourcesPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: restfulSE
Access matrix-like HDF5 server content or BigQuery content through a SummarizedExperiment interfacePapers that mentioned: 1
Very Likely Science (75)
Very Likely Science (100)
Very Likely Science (98)
Very Likely Science (85)
bioconductor: rhdf5client
Access HDF5 content from HDF Scalable Data ServicePapers that mentioned: 1
Very Likely Science (83)
Very Likely Science (90)
bioconductor: epigenomix
Epigenetic and gene transcription data normalization and integration with mixture modelsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: sRACIPE
Systems biology tool to simulate gene regulatory circuitsPapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (90)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (75)
Very Likely Science (100)
bioconductor: fmrs
Variable Selection in Finite Mixture of AFT Regression and FMR ModelsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: RNAinteract
Estimate Pairwise Interactions from multidimensional featuresPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (70)
bioconductor: dyebias
The GASSCO method for correcting for slide-dependent gene-specific dye biasPapers that mentioned: 1
Very Likely Science (90)
bioconductor: proBatch
Tools for Diagnostics and Corrections of Batch Effects in ProteomicsPapers that mentioned: 1
Very Likely Science (100)
bioconductor: MesKit
A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterationsPapers that mentioned: 1
Very Likely Science (75)
bioconductor: DominoEffect
Identification and Annotation of Protein Hotspot ResiduesPapers that mentioned: 1
Very Likely Science (90)
Very Likely Science (90)
bioconductor: MeSHDbi
DBI to construct MeSH-related package from sqlite filePapers that mentioned: 1
Very Likely Science (75)
bioconductor: exomePeak2
Peak Calling and differential analysis for MeRIP-SeqPapers that mentioned: 1
Very Likely Science (100)
bioconductor: proBAMr
Generating SAM file for PSMs in shotgun proteomics dataPapers that mentioned: 1
Very Likely Science (100)
bioconductor: memes
motif matching, comparison, and de novo discovery using the MEME SuitePapers that mentioned: 1
Very Likely Science (100)
Very Likely Science (100)
bioconductor: ceRNAnetsim
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)Papers that mentioned: 1
Very Likely Science (100)