Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: tximport

https://packages.ecosyste.ms/registries/bioconductor.org/packages/tximport

Import and summarize transcript-level estimates for transcript- and gene-level analysis
1 version
Latest release: about 1 year ago
13 dependent packages
318,433 downloads total

Papers Mentioning tximport 367

10.3389/fpls.2019.00235
Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
Cited by: 49
Author(s): Cristiane P. G. Calixto, Nikoleta A. Τzioutziou, Allan B. James, Csaba Hornyik, Wenbin Guo, Runxuan Zhang, Hugh G. Nimmo, John W. Brown
Software Mentions: 4
Published: over 5 years ago
10.1016/j.crimmu.2021.07.002
Tissue macrophages and interferon-gamma signalling control blood-stage Plasmodium chabaudi infections derived from mosquito-transmitted parasites
Cited by: 2
Author(s): Katrien Deroost, Christopher Alder, Caroline Hosking, Sarah McLaughlin, Jing-wen Lin, Matthew D. Lewis, Yolanda Saavedra-Torres, John W.G. Addy, Prisca Lévy, Maria Giorgalli, Jean Langhorne
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13287-020-02111-w
Radiation-induced toxicity in rectal epithelial stem cell contributes to acute radiation injury in rectum
Cited by: 11
Author(s): Felipe Rodriguez-Tirado, Payel Bhanja, Eduardo Castro-Nallar, Ximena Diaz Olea, Catalina Salamanca, Subhrajit Saha
Software Mentions: 4
Published: almost 4 years ago
10.15252/embj.2019104202
Systematic analysis of the <scp>IL</scp> ‐17 receptor signalosome reveals a robust regulatory feedback loop
Cited by: 14
Author(s): Helena Draberova, Sarka Janusova, Daniela Knizkova, Tereza Šemberová, Michaela Přibíková, Andrea Ujevic, Karel Harant, Sofija Knápková, Matouš Hrdinka, Viola Fanfani, Giovanni Stracquadanio, Ales Drobek, Klara Ruppova, Ondřej Štěpánek, Peter Dráber
Software Mentions: 4
Published: over 4 years ago
10.1186/s12864-017-3840-1
Characterizing the reproductive transcriptomic correlates of acute dehydration in males in the desert-adapted rodent, Peromyscus eremicus
Cited by: 9
Author(s): Lauren Kordonowy, Matthew D. MacManes
Software Mentions: 4
Published: over 7 years ago
10.1038/s42003-021-02366-w
Multiomic analysis of Schistosoma mansoni reveals unique expression profiles in cercarial heads and tails
Cited by: 1
Author(s): James R Hagerty, Hyung Chul Kim, Emmitt R. Jolly
Software Mentions: 4
Published: over 3 years ago
10.1038/s42003-019-0306-9
Mechanistic insights into the evolution of DUF26-containing proteins in land plants
Cited by: 67
Author(s): Aleksia Vaattovaara, Benjamin Brandt, Sitaram Rajaraman, Omid Safronov, Andres Veidenberg, Markéta Luklová, Jaakko Kangasjärvi, Ari Löytynoja, Michael Hothorn, Jarkko Salojärvi, Michael Wrzaczek
Software Mentions: 4
Published: almost 6 years ago
10.1002/ece3.7664
Alternative migratory tactics in brown trout (<i>Salmo trutta</i>) are underpinned by divergent regulation of metabolic but not neurological genes
Cited by: 3
Author(s): Robert Wynne, Louise C. Archer, Stephen A. Hutton, Luke Harman, Patrick Gargan, Peter Moran, Eileen Dillane, Jamie Coughlan, T. Cross, Philip McGinnity, Thomas J. Colgan, Thomas E. Reed
Software Mentions: 4
Published: over 3 years ago
10.1186/s13072-019-0319-0
Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells
Cited by: 29
Author(s): Ryuichiro Nakato, Youichiro Wada, Ryo Nakaki, Genta Nagae, Yuki Katou, Sadami Tsutsumi, N. Nakajima, Hiroshi Fukuhara, Atsushi Iguchi, Takahide Kohro, Yasuharu Kanki, Yutaka Saitô, Mika Kobayashi, Akashi Izumi-Taguchi, Naoki Osato, Kenji Tatsuno, Asuka Kamio, Yoko Hayashi‐Takanaka, Hiromi Wada, Shinzo Ohta, Masamichi Aikawa, Hiroyuki Nakajima, Masaki Nakamura, Rebecca C. McGee, Kyle W. Heppner, Tatsuo Kawakatsu, Michiru Genno, Hiroshi Yanase, Haruki Kume, Takaaki Senbonmatsu, Yukio Homma, Shigeyuki Nishimura, Toutai Mitsuyama, Hiroyuki Aburatani, Hiroshi Kimurâ, Katsuhiko Shirahige
Software Mentions: 4
Published: almost 5 years ago
10.1186/s13059-018-1590-2
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
Cited by: 249
Author(s): Mihaela Pertea, Alaina Shumate, Geo Pertea, Ales Varabyou, Florian P. Breitwieser, Yu Chi Chang, Anil K. Madugundu, Akhilesh Pandey, Steven L. Salzberg
Software Mentions: 4
Published: almost 6 years ago
10.1111/eva.13142
Transcriptional frontloading contributes to cross‐tolerance between stressors
Cited by: 8
Author(s): Michael T. Collins, Melody S. Clark, John I. Spicer, Manuela Truebano
Software Mentions: 4
Published: about 4 years ago
10.1186/s12864-021-07416-5
Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing
Cited by: 20
Author(s): Wei Wang, Lei Wang, Ling Wang, Mingqian Tan, Collins Ogutu, Ziyan Yin, Jian Zhou, Jiaomei Wang, Lijun Wang, Xin Yan
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12967-021-02754-0
FOXO1 mitigates the SMAD3/FOXL2C134W transcriptomic effect in a model of human adult granulosa cell tumor
Cited by: 5
Author(s): Christian Secchi, Paola Benaglio, Francesca Mulas, Martina Belli, Dwayne G. Stupack, Shunichi Shimasaki
Software Mentions: 3
Published: over 3 years ago
10.1136/annrheumdis-2020-217204
Investigation of genetically regulated gene expression and response to treatment in rheumatoid arthritis highlights an association between <i>IL18RAP</i> expression and treatment response
Cited by: 10
Author(s): Svetlana Cherlin, Myles Lewis, Darren Plant, Nisha Nair, Katriona Goldmann, Evan Tzanis, Michael R. Barnes, Paul McKeigue, Jennifer H. Barrett, Costantino Pitzalis, Anne Barton, Heather J. Cordell
Software Mentions: 3
Published: over 4 years ago
10.3390/antibiotics9100715
Aureolic Acid Group of Agents as Potential Antituberculosis Drugs
Cited by: 2
Author(s): Julia Bespyatykh, Dmitry Bespiatykh, Maja V. Malakhova, Ksenia M. Klimina, Andrey Bespyatykh, Anna M. Varizhuk, Anna N. Tevyashova, Tatiana A Nikolenko, Galina E. Pozmogova, Elena N. Ilina, Egor Shitikov
Software Mentions: 3
Published: about 4 years ago
10.1186/s12885-019-6327-4
Molecular subtyping improves prognostication of Stage 2 colorectal cancer
Cited by: 13
Author(s): Rachel Purcell, Sebastian Schmeier, Yee Chen Lau, John F. Pearson, F. A. Frizelle
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12862-021-01779-9
Shifts in morphology, gene expression, and selection underlie web loss in Hawaiian Tetragnatha spiders
Cited by: 7
Author(s): Cory A. Berger, Michael S. Brewer, Nobuaki Kono, Hiroyuki Nakamura, Kazuharu Arakawa, Susan Kennedy, Hannah M. Wood, Seira A. Adams, Rosemary G. Gillespie
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-018-5321-6
Time matters! Developmental shift in gene expression between the head and the trunk region of the cichlid fish Astatotilapia burtoni
Cited by: 2
Author(s): Athimed El Taher, Nicolás Lichilín, Walter Salzburger, Astrid Böhne
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12864-019-5426-6
Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome
Cited by: 4
Author(s): Madison T. Ortega, Nathan J. Bivens, Takamichi Jogahara, Asato Kuroiwa, Scott A. Givan, Cheryl S. Rosenfeld
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12891-021-04662-2
Dysregulation of ribosome-related genes in ankylosing spondylitis: a systems biology approach and experimental method
Cited by: 3
Author(s): Arezou Lari, Hamid Gholami Pourbadie, Ali Sharifi‐Zarchi, Maryam Akhtari, Leila Nejatbakhsh Samimi, Ahmadreza Jamshidi, Mahdi Mahmoudi
Software Mentions: 3
Published: about 3 years ago
10.1186/s12870-020-02612-z
Insights into the resistance of a synthetically-derived wheat to Septoria tritici blotch disease: less is more
Cited by: 6
Author(s): Harriet R. Benbow, Ciarán J. Brennan, Binbin Zhou, Thalia Christodoulou, Simon Berry, Cristóbal Uauy, Ewen Mullins, Fiona M. Doohan
Software Mentions: 3
Published: about 4 years ago
10.1093/brain/awz241
CSF1R inhibitor JNJ-40346527 attenuates microglial proliferation and neurodegeneration in P301S mice
Cited by: 137
Author(s): Renzo Mancuso, Gemma Fryatt, Madeleine Cleal, Juliane Obst, Elena Pipi, Jimena Monzón‐Sandoval, Elena M. Ribé, Laura Winchester, Caleb Webber, Alejo J. Nevado, Tom Jacobs, Nigel Austin, Clara Theunis, Karolien Grauwen, Eva Ruiz, Amritpal Mudher, Marta Vicente-Rodríguez, Christine A. Parker, Camilla Simmons, Diana Cash, Jill C. Richardson, Declan N.C. Jones, Simon Lovestone, Diego Gómez-Nicola, V. Hugh Perry
Software Mentions: 3
Published: about 5 years ago
10.3390/medicina57090861
Gene Expression Analysis in Patients with Cocaine-Induced Midline Destructive Lesions
Cited by: 3
Author(s): Matteo Trimarchi, Giacomo Bertazzoni, Alessandro Vinciguerra, Celia Pardini, Fabio Simeoni, Davide Cittaro, Mario Bussi, Dejan Lazarevic
Software Mentions: 3
Published: about 3 years ago
10.1093/molbev/msab131
Diverse Molecular Mechanisms Contribute to Differential Expression of Human Duplicated Genes
Cited by: 9
Author(s): Colin J. Shew, Paulina Carmona-Mora, Daniela C. Soto, Mira Mastoras, Elizabeth S. Roberts, Joseph Rosas, Dhriti Jagannathan, Gulhan Kaya, Henriette O’Geen, Megan Y. Dennis
Software Mentions: 3
Published: over 3 years ago
10.1074/mcp.RA120.002102
Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing
Cited by: 46
Author(s): Alerie Guzman de la Fuente, Rayner M L Queiroz, Tanay Ghosh, Christopher E McMurran, Juan F. Cubillos, Dwight E. Bergles, Denise Fitzgerald, Clare A. Jones, Kathryn S. Lilley, Colin P. Glover, R. J. M. Franklin
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.6626
The transcriptomic response to a short day to long day shift in leaves of the reference legume <i>Medicago truncatula</i>
Cited by: 15
Author(s): Geoffrey Thomson, James Taylor, Joanna Putterill
Software Mentions: 3
Published: over 5 years ago
10.14814/phy2.15004
Differential inflammatory responses of the native left and right ventricle associated with donor heart preservation
Cited by: 2
Author(s): Ienglam Lei, Wei Huang, Peter A. Ward, Jordan S. Pober, George Tellides, Gorav Ailawadi, Francis D. Pagani, Andrew P. Landstrom, Zhong Wang, Richard M. Mortensen, Marília Cascalho, Jeffrey L. Platt, Yuqing Eugene Chen, Hugo Yu Kor Lam, Paul C. Tang
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0233980
iPSCs from people with MS can differentiate into oligodendrocytes in a homeostatic but not an inflammatory milieu
Cited by: 24
Author(s): Itzy E. Morales Pantoja, Matthew D. Smith, Labchan Rajbhandari, Linzhao Cheng, Yongxing Gao, Vasiliki Mahairaki, Arun Venkatesan, Peter A. Calabresi, Kathryn C. Fitzgerald, Katharine A. Whartenby
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0239558
Transcriptomic signatures of cold adaptation and heat stress in the winter ant (Prenolepis imparis)
Cited by: 5
Author(s): Maria A. Tonione, Ke Bi, Neil D. Tsutsui
Software Mentions: 3
Published: about 4 years ago
10.3390/cells9112484
Quick, Coordinated and Authentic Reprogramming of Ribosome Biogenesis during iPSC Reprogramming
Cited by: 5
Author(s): Kejin Hu
Software Mentions: 3
Published: about 4 years ago
10.3390/cells10092376
Transcriptomic Response Dynamics of Human Primary and Immortalized Adrenocortical Cells to Steroidogenic Stimuli
Cited by: 4
Author(s): Kimberly Wellman, Rui Fu, Amber Baldwin, Juilee Rege, Elisabeth Murphy, William E. Rainey, Neelanjan Mukherjee
Software Mentions: 3
Published: about 3 years ago
10.1186/s13148-019-0697-y
A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers
Cited by: 18
Author(s): Gregor Richter, Jochen Kruppa, Matthias Munz, Ricarda Wiehe, Robert Häsler, André Franke, Orlando Martins, Yvonne Jockel‐Schneider, Corinna Bruckmann, Henrik Dommisch, Arne S. Schäefer
Software Mentions: 3
Published: over 5 years ago
10.1038/s42003-020-01305-5
Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases
Cited by: 3
Author(s): Saoko Atsumi, Hiroto Katoh, Daisuke Komura, Itaru Hashimoto, Genta Furuya, Hirotomo Koda, Hiroki Konishi, Ryôhei Suzuki, Asami Yamamoto, Satsuki Yuba, Hiroyuki Abé, Yasushi Rino, Takashi Oshima, Tetsuo Ushiku, Masashi Fukayama, Yasuyuki Seto, Shumpei Ishikawa
Software Mentions: 3
Published: about 4 years ago
10.1016/j.dib.2019.105025
RNA sequencing data of mouse 2-cell embryos treated with DMSO
Cited by: 0
Author(s): Min-Hee Kang, Seong-Yeob You, Kwonho Hong, Jin‐Hoi Kim
Software Mentions: 3
Published: almost 5 years ago
10.1242/dev.177840
Deficient autophagy in epithelial stem cells drives aging in the freshwater cnidarian <i>Hydra</i>
Cited by: 24
Author(s): Szymon Tomczyk, Nenad Slavko Suknovic, Quentin Schenkelaars, Yvan Wenger, Kazadi Ekundayo, Wanda Christa Buzgariu, Christoph Bauer, Kathleen E. Fischer, Steven N. Austad, Brigitte Galliot
Software Mentions: 3
Published: almost 6 years ago
10.15252/emmm.202113929
Histamine signaling and metabolism identify potential biomarkers and therapies for lymphangioleiomyomatosis
Cited by: 2
Author(s): C. Nájera Herranz, Francesca Mateo, Alexandra Baiges, Gorka Ruíz de Garibay, Alexandra Junza, Simon R. Johnson, Suzanne Miller, Nadia García, Jordi Capellades, Antonio Gómez, August Vidal, Luís Palomero, Roderic Espín, Ana I. Extremera, Eline Blommaert, Eva Revilla‐López, Berta Sáez, Susana Gómez-Ollés, Julio Ancochea, Claudia Valenzuela, Tamara Alonso, Piedad Ussetti, Rosalía Laporta, Antoni Xaubet, José Antonio Rodríguez-Portal, Ana Montes-Worboys, Carlos Machahua, Jaume Bordas, Javier A. Menéndez, Josep M. Cruzado, Roser Guiteras, Christophe Bontoux, Concettina La Motta, Aleix Noguera‐Castells, Mario Mancino, Enrique Lastra, Raül Rigo-Bonnin, José C. Perales, Francesc Viñals, Álvaro Lahiguera, Xiaohu Zhang, Daniel Cuadras, Coline H.M. van Moorsel, Joanne J. van der Vis, Marian J.R. Quanjel, Harilaos Filippakis, Razqallah Hakem, Chiara Gorrini, Marc Ferrer, Aslihan Ugun-Klusek, E. Ellen Billett, Elżbieta Radzikowska, Álvaro Casanova, María Molina-Molina, Antonio Román, Óscar Yanes, Miquel Àngel Pujana
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.5403
Differential gene expression analysis of symbiotic and aposymbiotic<i>Exaiptasia</i>anemones under immune challenge with<i>Vibrio coralliilyticus</i>
Cited by: 11
Author(s): Charles Roesel, Steven V. Vollmer
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.6764
Transcriptomics reveals specific molecular mechanisms underlying transgenerational immunity in <i>Manduca sexta</i>
Cited by: 6
Author(s): Charles Roesel, Rebeca B. Rosengaus, Wendy A. Smith, Steven V. Vollmer
Software Mentions: 3
Published: about 4 years ago
10.1186/s12987-019-0137-6
A perfusion bioreactor-based 3D model of the subarachnoid space based on a meningeal tissue construct
Cited by: 7
Author(s): Albert Neutzner, Laura Power, Markus Dürrenberger, Hendrik P. N. Scholl, Peter Meyer, Hanspeter E. Killer, David Wendt, Corina Kohler
Software Mentions: 3
Published: over 5 years ago
10.3389/fcell.2020.582282
Increased Expression of Zyxin and Its Potential Function in Androgenetic Alopecia
Cited by: 5
Author(s): Qingmei Liu, Xiaofeng Shi, Yue Zhang, Yan Huang, Kai Yang, Yulong Tang, Yanyun Ma, Yuting Zhang, Ji'an Wang, Li Zhang, Qi Zhang, Lei Xiao, Jinran Lin, Jiucun Wang, Wenyu Wu
Software Mentions: 3
Published: almost 4 years ago
10.3389/fgene.2021.639160
Exploring Common Therapeutic Targets for Neurodegenerative Disorders Using Transcriptome Study
Cited by: 10
Author(s): S. Akila Parvathy Dharshini, Sherlyn Jemimah, Y-h. Taguchi, M. Michael Gromiha
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2021.684015
Impaired Vitamin D Signaling in T Cells From a Family With Hereditary Vitamin D Resistant Rickets
Cited by: 6
Author(s): Fatima A. H. Al-Jaberi, Martin Kongsbak-Wismann, Alejandro Aguayo-Orozco, Nicolai Krogh, Terkild Brink Buus, Daniel Villalba Lopez, Anna K. O. Rode, Eva Gravesen, Klaus Ølgaard, Søren Brunak, Anders Woetmann, Niels Ødum, Charlotte M. Bonefeld, Carsten Geisler
Software Mentions: 3
Published: over 3 years ago
10.3389/fnmol.2021.683196
Gene Dosage- and Age-Dependent Differential Transcriptomic Changes in the Prefrontal Cortex of Shank2-Mutant Mice
Cited by: 3
Author(s): Seung-Joon Lee, Hyojin Kang, Hwajin Jung, Eunjoon Kim, Eunee Lee
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2021.705384
Wnt/β-Catenin Inhibition Disrupts Carboplatin Resistance in Isogenic Models of Triple-Negative Breast Cancer
Cited by: 16
Author(s): Willy Antoni Abreu de Oliveira, Stijn Moens, Youssef El Laithy, Bernard K. van der Veer, Paraskevi Athanasouli, Emanuela Elsa Cortesi, Maria Francesca Baietti, Kian Peng Koh, Juan-José Ventura, Frédéric Amant, Daniela Annibali, Frederic Lluı́s
Software Mentions: 3
Published: over 3 years ago
10.3389/fphys.2021.562817
Single-Cell RNA Sequencing Analysis of Chicken Anterior Pituitary: A Bird’s-Eye View on Vertebrate Pituitary
Cited by: 11
Author(s): Jiannan Zhang, Can Lv, Chunheng Mo, Meng Li, Ying Wan, Juan Li, Yajun Wang
Software Mentions: 3
Published: over 3 years ago
10.1186/s13059-020-02019-x
A human lung tumor microenvironment interactome identifies clinically relevant cell-type cross-talk
Cited by: 31
Author(s): Andrew J. Gentles, Angela Bik‐Yu Hui, Weiguo Feng, Armon Azizi, Ramesh V. Nair, Gina Bouchard, David A. Knowles, Alice L. Yu, Youngtae Jeong, Alborz Bejnood, Erna Forgó, Sushama Varma, Yue Xu, Amanda Kuong, Viswam S. Nair, Robert B. West, Matt van de Rijn, Chuong D. Hoang, Maximilian Diehn, Sylvia K. Plevritis
Software Mentions: 3
Published: over 4 years ago
10.1186/s13059-020-02152-7
Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation
Cited by: 57
Author(s): Celestia Fang, Zhenjia Wang, Cuijuan Han, Stephanie L. Safgren, Kathryn A. Helmin, Emmalee R. Adelman, Valentina Serafin, Giuseppe Basso, Kyle P. Eagen, Alexandre Gaspar-Maia, María E. Figueroa, Benjamin D. Singer, Aakrosh Ratan, Panagiotis Ntziachristos, Chongzhi Zang
Software Mentions: 3
Published: about 4 years ago
10.1172/jci.insight.140134
Effects of tesamorelin on hepatic transcriptomic signatures in HIV-associated NAFLD
Cited by: 11
Author(s): Lindsay T Fourman, James M. Billingsley, George Agyapong, Shannan Ho Sui, Meghan N. Feldpausch, Julia B. Purdy, Isabel Zheng, Chelsea S Pan, Kathleen E. Corey, Martin Torriani, David E. Kleiner, Colleen Hadigan, Takara Stanley, Raymond T. Chung, Steven Grinspoon
Software Mentions: 3
Published: over 4 years ago
10.1111/jcmm.15687
Development of a prognostic gene signature based on an immunogenomic infiltration analysis of osteosarcoma
Cited by: 14
Author(s): Yan Yu, Hongliang Zhang, Tingting Ren, Yi Huang, Xin Liang, Wei Wang, Jianfang Niu, Yu Han, Wei Guo
Software Mentions: 3
Published: over 4 years ago
10.1111/jcmm.16502
Novel COL4A1‐VEGFD gene fusion in myofibroma
Cited by: 5
Author(s): Guillaume Dachy, Sylvie Fraïtag, Boutaina Boulouadnine, Sabine Cordi, Jean‐Baptiste Demoulin
Software Mentions: 3
Published: over 3 years ago
10.21203/rs.3.rs-513461/v1
SARS-CoV-2 Infection Causes Dopaminergic Neuron Senescence
Cited by: 17
Author(s): Shuibing Chen, Yanxiao Han, Liuliu Yang, Tae Il Kim, Manoj S. Nair, Oliver Harschnitz, Pengfei Wang, Jiajun Zhu, So Yeon Koo, Xiaoxue Tang, Lauretta A. Lacko, Vasuretha Chandar, Yaron Bram, Tuo Zhang, Wei Zhang, Feng He, James Caicedo, Yaoxing Huang, Todd Evans, Paul van der Valk, Maarten J. Titulaer, Jochem K. H. Spoor, Robert L. Furler, Peter Canoll, James E. Goldman, Serge Przedborski, Robert E. Schwartz, David D. Ho, Lorenz Studer
Software Mentions: 3
Published: over 3 years ago
10.1126/sciadv.abi6896
Gene therapy with AR isoform 2 rescues spinal and bulbar muscular atrophy phenotype by modulating AR transcriptional activity
Cited by: 18
Author(s): Wooi Fang Lim, Mitra Forouhan, Thomas C. Roberts, Jesse Dabney, Ruth Ellerington, Alfina A Speciale, Raquel Manzano, Maria Lieto, Gina Sangha, Subhashis Banerjee, Mariana Conceição, Lara Cravo, Annabelle Biscans, Loïc Roux, Naemeh Pourshafie, Christopher Grunseich, Stéphanie Duguez, Anastasia Khvorova, Maria Pennuto, Constanza J. Cortés, Albert R. La Spada, Kenneth H. Fischbeck, Matthew J. Wood, Pasquale Striano
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-27912-1
Expression ratio of the TGFβ-inducible gene MYO10 is prognostic for overall survival of squamous cell lung cancer patients and predicts chemotherapy response
Cited by: 11
Author(s): Dmytro Dvornikov, Marc A. Schneider, Sebastian Ohse, Magdalena Szczygieł, I. Titkova, Marcus Rosenblatt, Thomas Muley, Arne Warth, Felix Herth, Hendrik Dienemann, Michael Thomas, Jens Timmer, Marcel Schilling, Hauke Busch, Melanie Boerries, Michael Meister, Ursula Klingmüller
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-018-32310-8
The m6A-methylase complex recruits TREX and regulates mRNA export
Cited by: 82
Author(s): Simon Lesbirel, Nicolas Viphakone, Matthew T Parker, Jacob Parker, Catherine G. Heath, Ian Sudbery, Stuart A. Wilson
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-019-46492-2
Global impact of diet and temperature over aquaculture of Octopus vulgaris paralarvae from a transcriptomic approach
Cited by: 24
Author(s): Pablo García-Fernández, María Prado-Álvarez, Manuel Nande, Daniel García de la serrana, C. Perales-Raya, E. Almansa, Inmaculada Varó, Camino Gestal
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-019-52628-1
Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae
Cited by: 8
Author(s): Felix Mittermayer, Martina Stiasny, Catriona Clemmesen, Till Bayer, Velmurugu Puvanendran, Melissa Chierici, Sissel Jentoft, Thorsten B.H. Reusch
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-020-70498-w
Multi-omic studies on missense PLG variants in families with otitis media
Cited by: 4
Author(s): Tori C. Bootpetch, Lena Hafrén, Christina L. Elling, Erin E. Baschal, Ani Manichaikul, Harold S. Pine, Wasyl Szeremeta, Melissa A. Scholes, Stephen P. Cass, Eric D. Larson, Kenny H. Chan, Rafaqat Ishaq, Jeremy D. Prager, Rehan Sadiq Shaikh, Samuel P. Gubbels, Ayesha Yousaf, Todd Wine, Michael J. Bamshad, Patricia J. Yoon, Herman A. Jenkins, Deborah A. Nickerson, Sven-Olrik Streubel, Norman R. Friedman, Daniel N. Frank, Elisabet Einarsdottir, Juha Kere, Saima Riazuddin, Kathleen A. Daly, Suzanne M. Leal, Allen F. Ryan, Petri S. Mattila, Zubair M. Ahmed, Michèle M. Sale, Tasnee Chonmaitree, Regie Lyn P. Santos‐Cortez
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-021-90857-5
Differential gene expression in Drosophila melanogaster and D. nigrosparsa infected with the same Wolbachia strain
Cited by: 5
Author(s): Matsapume Detcharoen, M. Schilling, Wolfgang Arthofer, Birgit C. Schlick‐Steiner, Florian M. Steiner
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-90439-5
Immunological and hematological outcomes following protracted low dose/low dose rate ionizing radiation and simulated microgravity
Cited by: 9
Author(s): Amber M. Paul, Eliah Overbey, Willian A. da Silveira, Nathaniel J. Szewczyk, Nina C. Nishiyama, Michael J. Pecaut, Sulekha Anand, Jonathan M. Galazka, Xiao Wen Mao
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-91023-7
Gene expression changes and DNA damage after ex vivo exposure of peripheral blood cells to various CT photon spectra
Cited by: 7
Author(s): Hanns Leonhard Kaatsch, B Becker, Simone Schüle, Patrick Ostheim, K Nestler, Julia Jakobi, Barbara Schäfer, Thomas Hantke, Marc A. Brockmann, Michael Abend, Stephan Waldeck, Matthias Port, Harry Scherthan, Reinhard Ullmann
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-021-96109-w
Inhibiting SARS-CoV-2 infection in vitro by suppressing its receptor, angiotensin-converting enzyme 2, via aryl-hydrocarbon receptor signal
Cited by: 17
Author(s): Keiji Tanimoto, Kiichi Hirota, Takahiro Fukazawa, Yoshiyuki Matsuo, Toshihito Nomura, Tanuza Nazmul, Nobuyuki Hirohashi, Hidemasa Bono, Takemasa Sakaguchi
Software Mentions: 3
Published: over 3 years ago
10.1126/scitranslmed.abg7673
Exaggerated IL-17A activity in human in vivo recall responses discriminates active tuberculosis from latent infection and cured disease
Cited by: 27
Author(s): Gabriele Pollara, Chris Turner, Joshua Rosenheim, Aneesh Chandran, Lucy Bell, Ayesha Khan, Amit A. Patel, Luis Felipe Peralta, Anna Folino, Ayse U. Akarca, Cristina Venturini, Tina Baker, Simone Ecker, Fabio Luigi Massimo Ricciardolo, Teresa Marafioti, César Ugarte-Gil, David Moore, Benjamin M. Chain, Gillian S. Tomlinson, Mahdad Noursadeghi
Software Mentions: 3
Published: over 3 years ago
10.1101/2021.01.19.427194
BRD2 inhibition blocks SARS-CoV-2 infection by reducing transcription of the host cell receptor ACE2
Cited by: 7
Author(s): Ruilin Tian, Avi J. Samelson, Veronica V. Rezelj, Merissa Chen, Gokul N. Ramadoss, Xiaoyan Guo, Alice Mac Kain, Quang Tran, Shion A. Lim, Irene Lui, James K. Nuñez, Sarah J. Rockwood, Na Liu, Jared Carlson-Stevermer, Jennifer Oki, Travis J. Maures, Kevin Holden, Jonathan S. Weissman, James A. Wells, Bruce R. Conklin, Marco Vignuzzi, Martin Kampmann
Software Mentions: 3
Published: almost 4 years ago
10.1128/mSphere.00477-17
The Candida albicans TOR-Activating GTPases Gtr1 and Rhb1 Coregulate Starvation Responses and Biofilm Formation
Cited by: 26
Author(s): Peter R. Flanagan, Ningning Liu, Darren J. Fitzpatrick, Karsten Hokamp, Julia R. Köhler, Gary P. Moran
Software Mentions: 3
Published: almost 7 years ago
10.1128/mSystems.00974-20
Nonadditive Transcriptomic Signatures of Genotype-by-Genotype Interactions during the Initiation of Plant-Rhizobium Symbiosis
Cited by: 23
Author(s): Camilla Fagorzi, Giovanni Bacci, Rui Huang, Lisa Cangioli, Alice Checcucci, Margherita Fini, Elena Perrin, Chiara Natali, George C. diCenzo, Alessio Mengoni
Software Mentions: 3
Published: over 3 years ago
10.1167/iovs.62.7.16
North Carolina Macular Dystrophy: Phenotypic Variability and Computational Analysis of Disease-Associated Noncoding Variants
Cited by: 9
Author(s): David J. Green, Eva Lenassi, Cerys Manning, David McGaughey, Vinod Sharma, Graeme Black, Jamie M Ellingford, Panagiotis I. Sergouniotis
Software Mentions: 3
Published: over 3 years ago
10.1038/s41389-020-00286-8
Functional screening identifies aryl hydrocarbon receptor as suppressor of lung cancer metastasis
Cited by: 21
Author(s): Silke Nothdurft, Clotilde Thumser-Henner, Frank Breitenbücher, Ross A. Okimoto, Madeleine Dorsch, Christiane A. Opitz, Ahmed Sadik, Charlotte Esser, Michael Hölzel, Saurabh Asthana, Jan Förster, Daniela Beißer, Sophie Kalmbach, Barbara M. Grüner, Trever G. Bivona, Alexander Schramm, Martin Schüler
Software Mentions: 3
Published: about 4 years ago
10.7554/eLife.63368
Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila
Cited by: 24
Author(s): Bhavatharini Kasinathan, Serafin U. Colmenares, Hannah McConnell, Janet M. Young, Gary H. Karpen, Harmit S. Malik
Software Mentions: 3
Published: about 4 years ago
10.7554/eLife.43877
Detailed analysis of chick optic fissure closure reveals Netrin-1 as an essential mediator of epithelial fusion
Cited by: 27
Author(s): Holly Hardy, James Prendergast, Aara Patel, Sunit Dutta, Violeta Trejo-Reveles, Hannah Kröger, Andrea R. Yung, Lisa V. Goodrich, Brian P. Brooks, Jane C. Sowden, Joe Rainger
Software Mentions: 3
Published: over 5 years ago
10.7554/eLife.61070
EKLF/KLF1 expression defines a unique macrophage subset during mouse erythropoiesis
Cited by: 17
Author(s): K. Mukherjee, Li Xue, Antanas Planutis, Merlin Nithya Gnanapragasam, Andrew Chess, James J. Bieker
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms20194742
Causes and Consequences of A Glutamine Induced Normoxic HIF1 Activity for the Tumor Metabolism
Cited by: 17
Author(s): Matthias Kappler, Ulrike Pabst, Claus Weinholdt, Helge Täubert, Swetlana Rot, Tom Kaune, Johanna Kotrba, Martin Porsch, Antje Güttler, Matthias Bache, Knut Krohn, Fabian Bull, Anne Riemann, Claudia Wickenhauser, Barbara Seliger, Johannes Schubert, Bilal Al‐Nawas, Oliver Thews, Ivo Große, Dirk Vordermark, Alexander W. Eckert
Software Mentions: 3
Published: about 5 years ago
10.3390/ijms22020810
Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Cited by: 8
Author(s): Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijms22073767
Characterization of Type I Interferon-Associated Chemokines and Cytokines in Lacrimal Glands of Nonobese Diabetic Mice
Cited by: 5
Author(s): Merri-Grace Allred, Michael S. Chimenti, Ashley E. Ciecko, Yi-Guang Chen, Scott M. Lieberman
Software Mentions: 3
Published: over 3 years ago
10.1186/s12974-020-01781-w
Transcriptomic analysis of brain tissues identifies a role for CCAAT enhancer binding protein β in HIV-associated neurocognitive disorder
Cited by: 11
Author(s): Saranya Canchi, Mary Swinton, Robert A. Rissman, Jerel Adam Fields
Software Mentions: 3
Published: over 4 years ago
10.1186/s12864-018-5312-7
Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism
Cited by: 9
Author(s): Yameng Lu, Paul R. Johnston, Stuart R. Dennis, Michael T. Monaghan, Uwe John, Piet Spaak, Justyna Wolinska
Software Mentions: 2
Published: almost 6 years ago
10.3389/fnmol.2018.00250
Integrative Brain Transcriptome Analysis Reveals Region-Specific and Broad Molecular Changes in Shank3-Overexpressing Mice
Cited by: 28
Author(s): Can Jin, Hyojin Kang, Jae Ryun Ryu, Shinhyun Kim, Yinhua Zhang, Yeunkum Lee, Yoonhee Kim, Ki-Hoon Han
Software Mentions: 2
Published: about 6 years ago
10.1186/s12864-020-06903-5
Sexual dimorphism and sex-biased gene expression in an egg parasitoid species, Anastatus disparis
Cited by: 4
Author(s): Pengcheng Liu, Dejun Hao, Haoyuan Hu, Jian‐Rong Wei
Software Mentions: 2
Published: over 4 years ago
10.1186/s40168-020-00963-1
A mixed community of skin microbiome representatives influences cutaneous processes more than individual members
Cited by: 22
Author(s): Kristin Loomis, Susan K. Wu, Amanda Ernlund, Kristina Zudock, Allison Reno, Kianna M Blount, David Karig
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12934-020-01326-z
Assessment of the ptxD gene as a growth and selective marker in Trichoderma atroviride using Pccg6, a novel constitutive promoter
Cited by: 6
Author(s): Nohemí Carreras-Villaseñor, José Guillermo Rico-Ruiz, Ricardo A. Chávez Montes, Lenin Yong-Villalobos, José Fabricio López-Hernández, Pedro Martı́nez-Hernández, Luis Herrera‐Estrella, Damar López‐Arredondo
Software Mentions: 2
Published: over 4 years ago
10.1186/s12974-021-02197-w
Traumatic brain injury results in unique microglial and astrocyte transcriptomes enriched for type I interferon response
Cited by: 33
Author(s): Brittany P. Todd, Michael S. Chimenti, Zili Luo, Polly J. Ferguson, Alexander G. Bassuk, Elizabeth A. Newell
Software Mentions: 2
Published: over 3 years ago
10.26508/lsa.202101037
RNA sequencing reveals niche gene expression effects of beta-hydroxybutyrate in primary myotubes
Cited by: 2
Author(s): Philip M.M. Ruppert, Lie Deng, Guido Hooiveld, Roland W. J. Hangelbroek, Anja Zeigerer, Sander Kersten
Software Mentions: 2
Published: over 3 years ago
10.1002/art.41184
B Cell Synovitis and Clinical Phenotypes in Rheumatoid Arthritis: Relationship to Disease Stages and Drug Exposure
Cited by: 32
Author(s): Felice Rivellese, Frances Humby, Silvia Bugatti, Liliane Fossati-Jimack, Hasan Rizvi, Davide Lucchesi, Gloria Lliso-Ribera, Alessandra Nerviani, Rebecca Hands, Giovanni Giorli, B. Frias, Georgina Thorborn, Edyta Jaworska, Christopher R. John, Katriona Goldmann, Myles Lewis, Antonio Manzo, Michèle Bombardieri, Costantino Pitzalis, Iain B. McInnes, Chris Buckley, Peter Taylor, Ernest Choy, Arthur G. Pratt, Christopher J Edwards, Nagui Gendi, Pauline Ho, Bhaskar Dasgupta, Patrick Durez, João Eurico Fonseca, Pier Paolo Sainaghi, Mattia Bellan, John D. Isaacs, Juan D. Cañete, Alberto Cauli, Mattia Congia, Piero Reynolds, Robert J. Moots, Nora Ng, Carlomaurizio Montecucco, Patrick Verschueren
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms20061344
Specificity of the Metallothionein-1 Response by Cadmium-Exposed Normal Human Urothelial Cells
Cited by: 18
Author(s): Rhiannon V. McNeill, Andrew S. Mason, Mark E. Hodson, James W.F. Catto, Jennifer Southgate
Software Mentions: 2
Published: over 5 years ago
10.1016/S2666-5247(21)00146-4
Blood transcriptional biomarkers of acute viral infection for detection of pre-symptomatic SARS-CoV-2 infection: a nested, case-control diagnostic accuracy study
Cited by: 35
Author(s): Gupta Rk, Joshua Rosenheim, Lucy Bell, Aneesh Chandran, José Afonso Guerra‐Assunção, Gabriele Pollara, Matthew Whelan, Jessica Artico, George Joy, Hibba Kurdi, Daniel M. Altmann, Rosemary J. Boyton, Mala K. Maini, Áine McKnight, Jonathan Lambourne, Teresa Cutiño-Moguel, Charlotte Manisty, Thomas A. Treibel, James Moon, Benjamin M. Chain, Mahdad Noursadeghi, Hakam Abbass, Aderonke Abiodun, Mashael Alfarih, Zoe Alldis, Oliver E. Amin, Mervyn Andiapen, João Augusto, Georgiana Luisa Baca, Sasha N. L. Bailey, Anish Bhuva, Alex Boulter, Ruth Bowles, Olivia V Bracken, Ben O’Brien, Tim Brooks, Natalie Bullock, David K. Butler, Gabriella Captur, Nicola Champion, Carmen Chan, David Collier, Jorge Couto de Sousa, Xosé Couto-Parada, Rhodri H. Davies, Brooke Douglas, Cecilia Di Genova, Keenan Dieobi‐Anene, Mariana O. Diniz, Anaya Ellis, Karen Feehan, Malcolm Finlay, Marianna Fontana, Nasim Forooghi, Celia Gaier, Joseph M. Gibbons, Derek W. Gilroy, Matt Hamblin, Gabrielle Harker, Jacqueline Hewson, Lauren M. Hickling, Aroon D. Hingorani, Lee Howes, Alun Hughes, Gemma Hughes, Rebecca Hughes, Ivie Itua, Victor Jardim, Wing-Yiu Jason Lee, Melaniepetra Jensen, Jessica Jones, Meleri Jones, Vikas Kapil, Kai‐Min Lin, Sarah Louth, Vineela Mandadapu, Katia Menacho, Celina Mfuko, Oliver Mitchelmore, Christopher Moon, Diana Muñoz Sandoval, Sam M. Murray, Ashley Otter, Corinna Pade, Susana Palma, Ruth Parker, Kush Patel, Babita Pawarova, Steffen E. Petersen, Brian Piniera, Franziska P. Pieper, Daniel Pope, Maria Prossora, Lisa Rannigan, Alicja Rapala, Catherine J. Reynolds, Amy Richards, Matthew Robathan, Genine Sambile, Nathalie M. Schmidt, Amanda Semper, Andreas Seraphim, Mihaela Simion, Angelique Smit, Michelle A. Sugimoto, Leo Swadling, Stephen Taylor, Nigel Temperton, Stephen J. Thomas, George Thornton, Art Tucker, Jessry Veerapen, Mohit Vijayakumar, Sophie Welch, Theresa Wodehouse, Lucinda Wynne, Dan Zahedi
Software Mentions: 2
Published: about 3 years ago
10.3390/ijms20194800
Cytosolic Phospholipase A2 Alpha Regulates TLR Signaling and Migration in Metastatic 4T1 Cells
Cited by: 13
Author(s): Hanna Maja Tunset, Astrid Jullumstrø Feuerherm, Linn-Karina M. Selvik, Berit Johansen, Siver Andreas Moestue
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.ppat.1008038
Subclinical in utero Zika virus infection is associated with interferon alpha sequelae and sex-specific molecular brain pathology in asymptomatic porcine offspring
Cited by: 14
Author(s): Ivan Trus, Daniel Udenze, Brian Cox, Nathalie G. Bérubé, Rebecca E. Nordquist, Franz Josef van der Staay, Yanyun Huang, Gary P. Kobinger, David Safronetz, Volker Gerdts, Uladzimir Karniychuk
Software Mentions: 2
Published: about 5 years ago
10.1172/jci.insight.147280
Endothelial SOCS3 maintains homeostasis and promotes survival in endotoxemic mice
Cited by: 18
Author(s): Nina Martino, Ramon Bossardi Ramos, Shuhan Lu, Kara Leyden, Lindsay Tomaszek, Sudeshna Sadhu, Gabrielle Fredman, Ariel Jaitovich, Peter Vincent, Alejandro P. Adam
Software Mentions: 2
Published: over 3 years ago
10.1186/s12917-021-02955-1
A defect in the NOG gene increases susceptibility to spontaneous superficial chronic corneal epithelial defects (SCCED) in boxer dogs
Cited by: 5
Author(s): Kathryn M. Meurs, Keith W. Montgomery, Steven G. Friedenberg, Brian Williams, Brian C. Gilger
Software Mentions: 2
Published: over 3 years ago
10.1172/jci.insight.139452
Prenatal inflammation enhances antenatal corticosteroid–induced fetal lung maturation
Cited by: 10
Author(s): Augusto F. Schmidt, Paranthaman Senthamaraikannan, James P. Bridges, Pietro Presicce, Courtney M. Jackson, Lisa Miller, Suhas G. Kallapur, Claire Chougnet, Alan H. Jobe
Software Mentions: 2
Published: almost 4 years ago
10.3390/genes11010020
Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition
Cited by: 11
Author(s): Fernando Manuel Matias Hurtado, Maísa de Siqueira Pinto, Perla Novais de Oliveira, Diego Mauricio Riaño-Pachón, Laura Beatriz Inocente, Helaine Carrer
Software Mentions: 2
Published: almost 5 years ago
10.1534/g3.117.300504
Identification of Two Distinct Classes of the Human INO80 Complex Genome-Wide
Cited by: 19
Author(s): John S. Runge, Jesse R. Raab, Terry Magnuson
Software Mentions: 2
Published: over 6 years ago
10.1186/s12870-019-2106-2
Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought
Cited by: 7
Author(s): Andrew D. L. Nelson, Griesel Ponciano, Colleen McMahan, Daniel C. Ilut, N. Ace Pugh, Diaa Eldin M. Elshikha, Douglas J. Hunsaker, Duke Pauli
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-018-36649-w
Targeted expression profiling by RNA-Seq improves detection of cellular dynamics during pregnancy and identifies a role for T cells in term parturition
Cited by: 41
Author(s): Adi L. Tarca, Roberto Romero, Zhonghui Xu, Nardhy Gómez-López, Offer Erez, Chaur‐Dong Hsu, Sonia S. Hassan, Vincent J. Carey
Software Mentions: 2
Published: almost 6 years ago
10.3389/fnsys.2018.00063
Gene Network Dysregulation in the Trigeminal Ganglia and Nucleus Accumbens of a Model of Chronic Migraine-Associated Hyperalgesia
Cited by: 19
Author(s): Hyeonsoo Jeong, Laura S. Moye, Bruce R. Southey, Álvaro Gonzalez Hernández, Isaac Dripps, Elena V. Romanova, Stanislav S. Rubakhin, Jonathan V. Sweedler, Amynah Pradhan, Sandra L. Rodriguez-Zas
Software Mentions: 2
Published: almost 6 years ago
10.3389/fpls.2021.645218
Maize (Zea mays L.) Nucleoskeletal Proteins Regulate Nuclear Envelope Remodeling and Function in Stomatal Complex Development and Pollen Viability
Cited by: 13
Author(s): Joseph F. McKenna, Hardeep K. Gumber, Zachary M. Turpin, Alexis M. Jalovec, Andre C. Kartick, Katja Graumann, Hank W. Bass
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2020.622748
RNA-Seq Highlights Molecular Events Associated With Impaired Pollen-Pistil Interactions Following Short-Term Heat Stress in Brassica napus
Cited by: 12
Author(s): Neeta Lohani, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-019-52577-9
Developmental transcriptomes of the sea star, Patiria miniata, illuminate how gene expression changes with evolutionary distance
Cited by: 12
Author(s): Tsvia Gildor, Gregory A. Cary, Maya Lalzar, Veronica F. Hinman, Smadar Ben-Tabou de-Leon
Software Mentions: 2
Published: about 5 years ago
10.1186/s12920-018-0437-8
Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma
Cited by: 9
Author(s): Luís Augusto Eijy Nagai, Sung‐Joon Park, Kenta Nakai
Software Mentions: 2
Published: over 5 years ago
10.3389/fpls.2021.680151
Transcriptomic Analysis of Resistant and Susceptible Responses in a New Model Root-Knot Nematode Infection System Using Solanum torvum and Meloidogyne arenaria
Cited by: 12
Author(s): Kenzo Sato, Taketo Uehara, Julia Holbein, Yuko Sasaki-Sekimoto, Pamela Gan, Takahiro Bino, Katsushi Yamaguchi, Yasunori Ichihashi, Noriko Maki, Shuji Shigenobu, Hiroyuki Ohta, Rochus Franke, Shahid Siddique, Florian M. W. Grundler, Takamasa Suzuki, Yasuhiro Kadota, Ken Shirasu
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-020-59514-1
Combined HER3-EGFR score in triple-negative breast cancer provides prognostic and predictive significance superior to individual biomarkers
Cited by: 24
Author(s): Angela Ogden, Shristi Bhattarai, Bikram Sahoo, Nigel P. Mongan, Mansour Alsaleem, Andrew Green, Mohammed A. Aleskandarany, Ian O. Ellis, Sonal Pattni, Xiaoxian Bill Li, Carlos S. Moreno, Uma Krishnamurti, Emiel A. M. Janssen, Kristín Jónsdóttir, Emad A. Rakha, Padmashree C.G. Rida, Ritu Aneja
Software Mentions: 2
Published: almost 5 years ago