Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: tilingArray

https://packages.ecosyste.ms/registries/bioconductor.org/packages/tilingArray

Transcript mapping with high-density oligonucleotide tiling arrays
1 version
Latest release: about 1 year ago
2 dependent packages
44,953 downloads total

Papers Mentioning tilingArray 17

10.1371/journal.pcbi.1000227

Analyzing ChIP-chip Data Using Bioconductor
Cited by: 19
Author(s): Joern Toedling, Wolfgang Huber
Software Mentions: 39
Published: about 16 years ago

Analysis of Array-CGH Data Using the R and Bioconductor Software Suite
Cited by: 8
Author(s): Winfried Hofmann, Anja Weigmann, Marcel Tauscher, Britta Skawran, Tim Focken, R Buurman, Luzie U. Wingen, Brigitte Schlegelberger, Doris Steinemann
Software Mentions: 11
Published: almost 16 years ago

10.1155/2014/910390

<i>biomvRhsmm:</i>Genomic Segmentation with Hidden Semi-Markov Model
Cited by: 4
Author(s): Yang Du, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 10
Published: almost 11 years ago

10.1186/1471-2105-13-222

Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray
Cited by: 3
Author(s): Víctor Segura, Alejandro Toledo‐Arana, Maite Uzqueda, Íñigo Lasa, Arrate Muñoz-Barrutia
Software Mentions: 8
Published: over 12 years ago

10.1371/journal.pone.0000737

ADaCGH: A Parallelized Web-Based Application and R Package for the Analysis of aCGH Data
Cited by: 26
Author(s): Ramón Díaz‐Uriarte, Oscar M. Rueda
Software Mentions: 8
Published: over 17 years ago

10.15252/msb.20167507

TT‐seq captures enhancer landscapes immediately after T‐cell stimulation
Cited by: 43
Author(s): Margaux Michel, Carina Demel, Benedikt Zacher, Björn Schwalb, Stefan Krebs, Helmut Blum, Julien Gagneur, Patrick Cramer
Software Mentions: 7
Published: almost 8 years ago

10.15252/msb.20209873

Transcriptionally active enhancers in human cancer cells
Cited by: 20
Author(s): Katja Lidschreiber, Lisa Anna Jung, Henrik von der Emde, Kashyap Dave, Jussi Taipale, Patrick Cramer, Michael Lidschreiber
Software Mentions: 6
Published: almost 4 years ago

10.15252/msb.20145654

Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle
Cited by: 21
Author(s): Benedikt Zacher, Michael Lidschreiber, Patrick Cramer, Julien Gagneur, Achim Tresch
Software Mentions: 5
Published: about 10 years ago

10.1186/1471-2105-9-390

R/parallel – speeding up bioinformatics analysis with R
Cited by: 27
Author(s): Gonzalo Vera, Ritsert C. Jansen, Remo Suppi
Software Mentions: 5
Published: about 16 years ago

10.7554/eLife.15477

Increasing Notch signaling antagonizes PRC2-mediated silencing to promote reprograming of germ cells into neurons
Cited by: 31
Author(s): Stefanie Seelk, Irene Adrian‐Kalchhauser, Balázs Hargitai, Martina Hajdůšková, Silvia Gutnik, Baris Tursun, Rafal Ciosk
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0029917

Repression of Meiotic Genes by Antisense Transcription and by Fkh2 Transcription Factor in Schizosaccharomyces pombe
Cited by: 29
Author(s): Huei-Mei Chen, Adam P. Rosebrock, Sohail Khan, Bruce Futcher, Janet Leatherwood
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.ppat.0030077

Epigenomic Modifications Predict Active Promoters and Gene Structure in Toxoplasma gondii
Cited by: 106
Author(s): Mathieu Gissot, Krystyna A. Kelly, James W. Ajioka, John M. Greally, Kami Kim
Software Mentions: 3
Published: over 17 years ago

10.1371/journal.pgen.1002742

Genome-Wide Analysis of GLD-1–Mediated mRNA Regulation Suggests a Role in mRNA Storage
Cited by: 43
Author(s): Claudia Scheckel, Dimos Gaidatzis, Jane E. Wright, Rafal Ciosk
Software Mentions: 3
Published: over 12 years ago

10.1186/1471-2105-14-84

Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples
Cited by: 3
Author(s): David Mosén-Ansorena, Ana M. Aransay
Software Mentions: 2
Published: almost 12 years ago

10.1111/j.1365-2958.2009.06830.x

The transcriptionally active regions in the genome of <i>Bacillus subtilis</i>
Cited by: 149
Author(s): Simon Rasmussen, Henrik Bjørn Nielsen, Hanne Østergaard Jarmer
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0080495

The Role of Ctk1 Kinase in Termination of Small Non-Coding RNAs
Cited by: 15
Author(s): Tineke L. Lenstra, Agnieszka Tudek, Sandra Clauder, Zhenyu Xu, Spyridon T. Pachis, Dik van Leenen, Patrick Kemmeren, Lars M. Steinmetz, Domenico Libri, Frank C. P. Holstege
Software Mentions: 1
Published: about 11 years ago

10.1186/gb-2010-11-3-r24

High-resolution transcription atlas of the mitotic cell cycle in budding yeast
Cited by: 103
Author(s): Marina Granovskaia, Lars Juhl Jensen, Matthew E. Ritchie, Joern Toedling, Ning Ye, Peer Bork, Wolfgang Huber, Lars M. Steinmetz
Software Mentions: 1
Published: almost 15 years ago