10.3390/ijms20020438

Gut Microbiota and Predicted Metabolic Pathways in a Sample of Mexican Women Affected by Obesity and Obesity Plus Metabolic Syndrome
Cited by: 114
Author(s): Alejandra Chávez-Carbajal, Khemlal Nirmalkar, Ana Bertha Pérez-Lizaur, Fernando Hernández-Quiroz, Silvia Ramírez-del-Alto, Jaime García‐Mena, César Hernández‐Guerrero
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20163980

A Metagenomic-Based Approach for the Characterization of Bacterial Diversity Associated with Spontaneous Malolactic Fermentations in Wine
Cited by: 38
Author(s): Carmen Berbegal, Luigimaria Borruso, Mariagiovanna Fragasso, Maria Tufariello, Pasquale Russo, Lorenzo Brusetti, Giuseppe Spano, Vittorio Capozzi
Software Mentions: 3
Published: about 7 years ago

10.3390/ijms21030945

Effect of Pepper-Containing Diets on the Diversity and Composition of Gut Microbiome of Drosophila melanogaster
Cited by: 8
Author(s): Marleny García-Lozano, Joshua Haynes, Carlos Lopez-Ortiz, Purushothaman Natarajan, Yadira Peña-Garcia, Padma Nimmakayala, John R. Stommel, Suresh Babu Alaparthi, Cristian Sirbu, Nagamani Balagurusamy, Umesh K. Reddy
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms21134634

New Insight into the Composition of Wheat Seed Microbiota
Cited by: 33
Author(s): Agnieszka Kuźniar, Kinga Włodarczyk, Jarosław Grządziel, Małgorzata Woźniak, Karolina Furtak, Anna Gałązka, Ewa Dziadczyk, Ewa Skórzyńska-Polit, Agnieszka Woliñska
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms221910747

16S rRNA of Mucosal Colon Microbiome and CCL2 Circulating Levels Are Potential Biomarkers in Colorectal Cancer
Cited by: 14
Author(s): Carmela Nardelli, Ilaria Granata, Marcella Nunziato, Mario Setaro, Fortunata Carbone, Claudio Zulli, Vincenzo Pilone, Ettore Capoluongo, Giovanni Domenico De Palma, Francesco Corcione, Giuseppe Matarese, Francesco Salvatore, Lucia Sacchetti
Software Mentions: 3
Published: about 5 years ago

10.1080/20002297.2018.1536182

Preliminary study of the oral mycobiome of children with and without dental caries
Cited by: 27
Author(s): Jacquelyn M. Fechney, Gina V. Browne, Neeta Prabhu, László Irinyi, Wieland Meyer, Toby Hughes, Michelle Bockmann, Grant Townsend, Hanieh Salehi, Christina Adler
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.isci.2021.102659

The impact of propagule pressure on whole community invasions in biomethane-producing communities
Cited by: 5
Author(s): Pawel Sierocinski, Jesica Soria Pascual, Daniel Padfield, Mike Salter, Angus Buckling
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.01410

Humic Substances Alter Ammonia Production and the Microbial Populations Within a RUSITEC Fed a Mixed Hay – Concentrate Diet
Cited by: 18
Author(s): Stephanie A. Terry, Aline Maria Pereira Cruz Ramos, Devin B. Holman, Tim A. McAllister, Gerhard Breves, A. V. Chaves
Software Mentions: 3
Published: over 8 years ago

10.1002/advs.201900752

Gut Microbiota Changes in Patients with Bipolar Depression
Cited by: 86
Author(s): Shaohua Hu, Ang Li, Tingting Huang, Jianbo Lai, Jingjing Li, M. Elizabeth Sublette, Haifeng Lü, Qing‐Yi Lu, Yanli Du, Zhiying Hu, Chee H. Ng, Hua Zhang, Joan Lu, Tingting Mou, Shengyong Lu, Dandan Wang, Jinfeng Duan, Jianbo Hu, Manli Huang, Ning Wei, Weihua Zhou, Lifang Ruan, Ming D. Li, Yi Xu
Software Mentions: 3
Published: over 7 years ago

10.1002/advs.202100536

Decreased Abundance of <i>Akkermansia muciniphila</i> Leads to the Impairment of Insulin Secretion and Glucose Homeostasis in Lean Type 2 Diabetes
Cited by: 63
Author(s): Jing Zhang, Yueqiong Ni, Lingling Qian, Qichen Fang, Tingting Zheng, Mingliang Zhang, Qiongmei Gao, Ying Zhang, Jingwei Ni, Xuhong Hou, Yuqian Bao, Petia Kovatcheva‐Datchary, Aimin Xu, Huating Li, Gianni Panagiotou, Weiping Jia
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103108

Microbiome succession with increasing age in three oral sites
Cited by: 14
Author(s): Shili Liu, Yihua Wang, Le Zhao, Xiaoyuan Sun, Qiang Feng
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.202277

Mental awareness improved mild cognitive impairment and modulated gut microbiome
Cited by: 27
Author(s): Wei Wei Thwe Khine, Miao Lian Voong, Ted Kheng Siang Ng, Lei Feng, Grishma Rane, Alan Prem Kumar, Ee Heok Kua, Ratha Mahendran, Rathi Mahendran, Yuan‐Kun Lee
Software Mentions: 3
Published: almost 6 years ago

10.1152/ajpgi.00253.2018

Associations between the gut microbiota and host responses to high altitude
Cited by: 41
Author(s): J. Philip Karl, Claire E. Berryman, Andrew Young, Patrick N. Radcliffe, Tobyn Branck, Ida G. Pantoja-Feliciano, Jennifer Rood, Stefan M. Pasiakos
Software Mentions: 3
Published: almost 8 years ago

10.1186/s42523-021-00079-3

Longitudinal assessment of the bovine ocular bacterial community dynamics in calves
Cited by: 14
Author(s): Alison Bartenslager, Nirosh D. Althuge, John Dustin Loy, Matthew M. Hille, Matthew L Spangler, Samodha C. Fernando
Software Mentions: 3
Published: over 5 years ago

10.1186/s42523-020-00068-y

Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)
Cited by: 7
Author(s): Raphael Eisenhofer, Kristofer M. Helgen, David A. Taggart
Software Mentions: 3
Published: over 5 years ago

10.1186/s42523-020-00034-8

Microbial symbiosis and coevolution of an entire clade of ancient vertebrates: the gut microbiota of sea turtles and its relationship to their phylogenetic history
Cited by: 23
Author(s): T. Franciscus Scheelings, Robert J. Moore, Thi Thu Hao Van, Marcel Klaassen, Richard D. Reina
Software Mentions: 3
Published: over 6 years ago

10.3390/ani11051335

Bacillus Subtilis 29784 as a Feed Additive for Broilers Shifts the Intestinal Microbial Composition and Supports the Production of Hypoxanthine and Nicotinic Acid
Cited by: 11
Author(s): Pearl Choi, Lamya Rhayat, Eric Pinloche, Estelle Devillard, Ellen De Paepe, Lynn Vanhaecke, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11051433

Faecal Microbiome Transplantation as a Solution to Chronic Enteropathies in Dogs: A Case Study of Beneficial Microbial Evolution
Cited by: 11
Author(s): Michele Berlanda, Giada Innocente, Barbara Simionati, Barbara Di Camillo, Sonia Facchin, Maria Cecilia Giron, Edoardo Savarino, Federico Sebastiani, Francesca Fiorio, Ilaria Patuzzi
Software Mentions: 3
Published: over 5 years ago

10.3390/ani9030098

Evaluation of Black Soldier Fly (Hermetia illucens) Larvae and Pre-Pupae Raised on Household Organic Waste, as Potential Ingredients for Poultry Feed
Cited by: 73
Author(s): Kiyonori Kawasaki, Yuka Hashimoto, A. Nosrati Hori, T. Kawasaki, Hirofumi Hirayasu, Shun–ichiro Iwase, Akira Hashizume, Atsushi Ido, Chiemi Miura, Takeshi Miura, Satoshi Nakamura, Tomohiro Seyama, Yoshiki Matsumoto, Koji Kasai, Yuji Fujitani
Software Mentions: 3
Published: over 7 years ago

10.3390/ani11071975

A Standard Scale to Measure Equine Keeper Status and the Effect of Metabolic Tendency on Gut Microbiome Structure
Cited by: 0
Author(s): A. Johnson, Amy S. Biddle
Software Mentions: 3
Published: over 5 years ago

10.3390/ani11010084

A Single Dose of Synbiotics and Vitamins at Birth Affects Piglet Microbiota before Weaning and Modifies Post-Weaning Performance
Cited by: 5
Author(s): Marion Girard, M. Tretola, Giuseppe Bee
Software Mentions: 3
Published: almost 6 years ago

10.3390/antibiotics9020055

A 28 Day Clinical Assessment of a Lactic Acid-containing Antimicrobial Intimate Gel Wash Formulation on Skin Tolerance and Impact on the Vulvar Microbiome
Cited by: 11
Author(s): Elizabeth Bruning, Ying Chen, Karen McCue, Joseph R. Rubino, Jeremy E. Wilkinson, Alan D. Brown
Software Mentions: 3
Published: over 6 years ago

10.1128/AEM.01047-20

Fungal Signature of Moisture Damage in Buildings: Identification by Targeted and Untargeted Approaches with Mycobiome Data
Cited by: 9
Author(s): Rachel I. Adams, Iman Sylvain, Michal Spilak, John W. Taylor, Michael S. Waring, Mark J. Mendell
Software Mentions: 3
Published: about 6 years ago

10.1007/s00253-017-8714-6

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate
Cited by: 39
Author(s): Larisa Cortés-Tolalpa, Justin Norder, Jan Dirk van Elsas, Joana Falcão Salles
Software Mentions: 3
Published: over 8 years ago

10.1186/s12898-015-0051-y

Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach
Cited by: 161
Author(s): Wiebke Sickel, Markus J. Ankenbrand, Gudrun Grimmer, Andrea Holzschuh, Stephan Härtel, Jonathan Lanzen, Ingolf Steffan‐Dewenter, Alexander Keller
Software Mentions: 3
Published: about 11 years ago

10.1186/s12864-017-3721-7

Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples
Cited by: 19
Author(s): Jake Lin, Lenka Kramná, Reija Autio, Heikki Hyöty, Matti Nykter, Ondřej Cinek
Software Mentions: 3
Published: over 9 years ago

10.1186/s12866-020-01859-8

How being synanthropic affects the gut bacteriome and mycobiome: comparison of two mouse species with contrasting ecologies
Cited by: 11
Author(s): Barbora Bendová, Jaroslav Piálek, Ľudovít Ďureje, Lucie Schmiedová, Dagmar Čížková, Jean‐François Martin, Jakub Kreisinger
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-020-02017-w

Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition
Cited by: 18
Author(s): Ovokeraye H. Oduaran, Fiona B. Tamburini, Venesa Sahibdeen, Ryan Brewster, F. Xavier Gómez‐Olivé, Kathleen Kahn, Shane A. Norris, Stephen Tollman, Rhian Twine, Alisha Wade, Ryan G. Wagner, Stephen Tollman, Ami S. Bhatt, Scott Hazelhurst
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12866-020-01724-8

The influence of blood on the human gut microbiome
Cited by: 23
Author(s): Thierry Chénard, Mandy Malick, Jean Dubé, Éric Massé
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-019-1586-4

Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes
Cited by: 14
Author(s): Samuel Verbanic, Colin Y. Kim, John M. Deacon, Irene Chen
Software Mentions: 3
Published: about 7 years ago

10.1186/s12866-018-1367-5

Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study
Cited by: 13
Author(s): Martin Steen Mortensen, Bo Jensen, Jeanne V.A. Williams, Asker Brejnrod, Lee O’Brien Andersen, Dennis Röser, Bente Utoft Andreassen, Andreas Munk Petersen, Christen Rune Stensvold, Søren J. Sørensen, Karen A. Krogfelt
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12866-021-02288-x

Comparison of targeted metagenomics and IS-Pro methods for analysing the lung microbiome
Cited by: 2
Author(s): Tanweer Goolam Mahomed, Rph Peters, Ghj Pretorius, Akhter Goolam Mahomed, Veronica Ueckermann, Marleen M. Kock, M.M. Ehlers
Software Mentions: 3
Published: about 5 years ago

10.1186/s12866-021-02156-8

Microbial predation accelerates granulation and modulates microbial community composition
Cited by: 7
Author(s): Siew Herng Chan, Muhammad Hafiz Ismail, Chuan Hao Tan, Scott A. Rice, Diane McDougald
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-021-02139-9

Identification of cutaneous fungi and mites in adult atopic dermatitis: analysis by targeted 18S rRNA amplicon sequencing
Cited by: 8
Author(s): Sofie Marie Edslev, Paal Skytt Andersen, Tove Agner, Ditte Marie Lindhardt Saunte, Anna Cäcilia Ingham, Thor Bech Johannesen, Maja‐Lisa Clausen
Software Mentions: 3
Published: over 5 years ago

10.1186/s12866-020-01759-x

The penile microbiota of Black South African men: relationship with human papillomavirus and HIV infection
Cited by: 23
Author(s): Harris Onywera, Anna‐Lise Williamson, Luca Cozzuto, Sarah Bonnin, Zizipho Z. A. Mbulawa, David Coetzee, Julia Ponomarenko, Tracy L. Meiring
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-020-01969-3

Microbial succession from a subsequent secondary death event following mass mortality
Cited by: 12
Author(s): Lindsay Harrison, Emilia Kooienga, Cori Speights, Jeffery K. Tomberlin, Marcus A. Lashley, Brandon T. Barton, Heather R. Jordan
Software Mentions: 3
Published: almost 6 years ago

10.3390/bioengineering7010003

Inoculum Source Determines Acetate and Lactate Production during Anaerobic Digestion of Sewage Sludge and Food Waste
Cited by: 26
Author(s): Jan Moestedt, Maria Westerholm, Simon Isaksson, Anna Schnürer
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsbl.2020.0368

Chytrid fungi shape bacterial communities on model particulate organic matter
Cited by: 11
Author(s): Cordelia Roberts, Ro Allen, Kimberley Bird, Michael Cunliffe
Software Mentions: 3
Published: about 6 years ago

10.3390/biology10080792

Microbial Involvement in Carbon Transformation via CH4 and CO2 in Saline Sedimentary Pool
Cited by: 2
Author(s): Weronika Goraj, Anna Szafranek-Nakonieczna, Jarosław Grządziel, Cezary Polakowski, Mirosław Słowakiewicz, Yongnian Zheng, Anna Gałązka, Zofia Stępniewska, Anna Pytlak
Software Mentions: 3
Published: about 5 years ago

10.3390/biomedicines9010019

Gut Microbiome Composition Remains Stable in Individuals with Diabetes-Related Early to Late Stage Chronic Kidney Disease
Cited by: 11
Author(s): Ashani Lecamwasam, Tiffanie M. Nelson, Leni R. Rivera, Elif I Ekinci, Richard Saffery, Karen M. Dwyer
Software Mentions: 3
Published: almost 6 years ago

10.3390/biom9100516

Fish Oil, but Not Olive Oil, Ameliorates Depressive-Like Behavior and Gut Microbiota Dysbiosis in Rats under Chronic Mild Stress
Cited by: 18
Author(s): Te-Hsuan Tung, Yen-Ting Tung, I-Hsuan Lin, Chun Kuang Shih, Ngan Thi Kim Nguyen, Amalina Shabrina, Shih‐Yi Huang
Software Mentions: 3
Published: about 7 years ago

10.1186/s13068-020-01721-z

Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions
Cited by: 7
Author(s): Eva Maria Prem, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 3
Published: over 6 years ago

10.1007/s42770-019-00118-x

Defining microbial biomarkers for risk of preterm labor
Cited by: 10
Author(s): Anderson Santos de Freitas, Priscila Caroline Thiago Dobbler, Volker Mai, Renato S. Procianoy, Rita C. Silveira, Andrea Corso, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: about 7 years ago

10.1186/s12936-021-03606-4

Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota
Cited by: 24
Author(s): Diana Omoke, Mathew Kipsum, Solomon Otieno, Edward Esalimba, Mili Sheth, Audrey Lenhart, Ezekiel Mugendi Njeru, Eric Ochomo, Nsa Dada
Software Mentions: 3
Published: over 5 years ago

10.3390/md18090437

The Microbial Community Associated with Rhizostoma pulmo: Ecological Significance and Potential Consequences for Marine Organisms and Human Health
Cited by: 11
Author(s): Loredana Stabili, Lucia Rizzo, Lorena Basso, Marinella Marzano, Bruno Fosso, Graziano Pesole, Stefano Piraino
Software Mentions: 3
Published: about 6 years ago

10.1264/jsme2.ME19064

Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types
Cited by: 10
Author(s): Reiko Fujimura, Yoichi Azegami, Wei Wei, Hiroko Kakuta, Yutaka Shiratori, Nobuhito Ohte, Keishi Senoo, Shigeto Otsuka, Kazuo Isobe
Software Mentions: 3
Published: almost 7 years ago

10.1264/jsme2.ME20072

Comparative Analysis of Bacterial Diversity and Community Structure in the Rhizosphere and Root Endosphere of Two Halophytes, &lt;i&gt;Salicornia europaea&lt;/i&gt; and &lt;i&gt;Glaux maritima&lt;/i&gt;, Collected from Two Brackish Lakes in Japan
Cited by: 10
Author(s): Kosuke Yamamoto, Minenosuke Matsutani, Yuh Shiwa, Taichiro Ishige, Hikaru Sakamoto, Hiromasa Saitoh, Seiya Tsushima
Software Mentions: 3
Published: almost 7 years ago

10.1002/mbo3.821

Patterns of community assembly in the developing chicken microbiome reveal rapid primary succession
Cited by: 69
Author(s): Stephanie D. Jurburg, Michael S.M. Brouwer, Daniela Ceccarelli, Jeanet van der Goot, A.J.M. Jansman, Alex Bossers
Software Mentions: 3
Published: over 7 years ago

10.1002/mbo3.428

Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities
Cited by: 61
Author(s): Christine N. Shulse, Brianne M. Maillot, Craig R. Smith, Matthew J. Church
Software Mentions: 3
Published: almost 10 years ago

10.1128/MRA.00182-20

16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary
Cited by: 5
Author(s): Eugênia Naro‐Maciel, Melissa R. Ingala, Irena E. Werner, Allison M. Fitzgerald
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-016-0220-z

Deciphering composition and function of the root microbiome of a legume plant
Cited by: 135
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Valexia Roussely-Provent, Jean‐Claude Walser, Klaus Schlaeppi
Software Mentions: 3
Published: over 9 years ago

10.1186/s40168-017-0333-z

Collection of non-meconium stool on fecal occult blood cards is an effective method for fecal microbiota studies in infants
Cited by: 13
Author(s): Wendy S. W. Wong, Nicole C. Clemency, Elisabeth Klein, Marina Provenzano, Ramaswamy K. Iyer, John E. Niederhuber, Suchitra K. Hourigan
Software Mentions: 3
Published: about 9 years ago

10.1186/s40168-020-00921-x

Ontogeny, species identity, and environment dominate microbiome dynamics in wild populations of kissing bugs (Triatominae)
Cited by: 21
Author(s): Joel J. Brown, Sonia M. Rodríguez‐Ruano, Anbu Poosakkannu, Giampiero Batani, Justin O. Schmidt, Walter Roachell, Jan Zima, Václav Hypša, Eva Nováková
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40168-018-0444-1

Microbiota inoculum composition affects holobiont assembly and host growth in Daphnia
Cited by: 63
Author(s): Martijn Callens, Hidenobu Watanabe, Yasuhiko Kato, Jun Miura, Ellen Decaestecker
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-020-00890-1

Immunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the Afribiota study
Cited by: 19
Author(s): Kelsey E. Huus, André Rodriguez-Pozo, Nathalie Kapel, Alison Nestoret, Azimdine Habib, Michel Dédé, Amee R. Manges, Jean-Marc Collard, Philippe J. Sansonetti, Pascale Vonaesch, B. Brett Finlay, Emilson Jean Andriatahirintsoa, Alexandra Bastaraud, Jean-Marc Collard, Maria Doria, Serge Ghislain Djorie, Aurélie Etienne, B. Brett Finlay, Tamara Giles‐Vernick, Jean-Chrysostome Gody, Bolmbaye Privat Godje, Ionela Gouandjika-Vassilache, Francis Allan Hunald, Nathalie Kapel, Jean-Pierre Lombart, Alexandre Manirakiza, Synthia Nazita Nigatoloum, Lisette Raharimalala, Maheninasy Rakotondrainipiana, Rindra Vatosoa Randremanana, Harifetra Mamy Richard Randriamizao, Frédérique Randrianirina, Annick Robinson, Pierre-Alain Rubbo, Philippe J. Sansonetti, Laura Schaeffer, Inès Vigan-Womas, Sonia Sandrine Vondo, Pascale Vonaesch, Laura Wegener-Parfrey
Software Mentions: 3
Published: about 6 years ago

10.1186/s40168-016-0227-5

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome
Cited by: 54
Author(s): Catherine Igartua, Emily Davenport, Yoav Gilad, Dan L. Nicolae, Jayant M. Pinto, Carole Ober
Software Mentions: 3
Published: over 9 years ago

10.1186/s40168-017-0373-4

The gut mycobiome of the Human Microbiome Project healthy cohort
Cited by: 526
Author(s): Andrea K. Nash, Thomas A. Auchtung, Matthew C. Wong, Daniel P. Smith, Jonathan R. Gesell, Matthew C. Ross, Christopher J. Stewart, Ginger Metcalf, Donna M. Muzny, Richard A. Gibbs, Nadim J. Ajami, Joseph F. Petrosino
Software Mentions: 3
Published: almost 9 years ago

10.1186/s40168-015-0097-2

Humanized microbiota mice as a model of recurrent Clostridium difficile disease
Cited by: 63
Author(s): James W. Collins, Jennifer M. Auchtung, Laura Schaefer, Kathryn A. Eaton, Robert A. Britton
Software Mentions: 3
Published: about 11 years ago

10.1186/s40168-015-0106-5

Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Cited by: 100
Author(s): Jennifer M. Auchtung, Catherine D. Robinson, Robert A. Britton
Software Mentions: 3
Published: about 11 years ago

10.1186/s40168-018-0455-y

Use of dietary indices to control for diet in human gut microbiota studies
Cited by: 80
Author(s): Ruth C E Bowyer, Matthew A. Jackson, Tess Pallister, Jane Skinner, Tim D. Spector, Ailsa Welch, Claire J. Steves
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-019-0672-z

Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center
Cited by: 27
Author(s): Aaron J. Prussin, Pedro J. Torres, John Shimashita, Steven R. Head, Kyle Bibby, Scott T. Kelley, Linsey C. Marr
Software Mentions: 3
Published: over 7 years ago

10.3390/microorganisms9020272

Dynamics of the Apple Fruit Microbiome after Harvest and Implications for Fruit Quality
Cited by: 18
Author(s): Yvonne Bösch, E. Britt, Sarah Perren, Andreas Naef, Jürg E. Frey, Andreas Bühlmann
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8040497

Investigating Algal Communities in Lacustrine and Hydro-Terrestrial Environments of East Antarctica Using Deep Amplicon Sequencing
Cited by: 6
Author(s): Yuu Hirose, Takuhei Shiozaki, Midori Õtani, Sakae Kudoh, Satoru Imura, Toshihiko Eki, Naomi Harada
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms8101582

Bioaminergic Responses in an In Vitro System Studying Human Gut Microbiota–Kiwifruit Interactions
Cited by: 4
Author(s): Shanthi G. Parkar, Carel M. H. Jobsis, Tania Trower, Janine M. Cooney, Duncan Hedderley, Kerry L. Bentley‐Hewitt
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms7090282

Differential Impact of Subtherapeutic Antibiotics and Ionophores on Intestinal Microbiota of Broilers
Cited by: 31
Author(s): Kelsy Robinson, Sage Becker, Yingping Xiao, Wentao Lyu, Qing Yang, Huiling Zhu, Hua Yang, Jiangchao Zhao, Guolong Zhang
Software Mentions: 3
Published: about 7 years ago

10.3390/microorganisms8060872

Arbuscular Mycorrhizal Fungal Communities of Native Plant Species under High Petroleum Hydrocarbon Contamination Highlights Rhizophagus as a Key Tolerant Genus
Cited by: 10
Author(s): Soon‐Jae Lee, Mengxuan Kong, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms9010021

Targeted Next-Generation Sequencing and Informatics as an Effective Tool to Establish the Composition of Bovine Piroplasm Populations in Endemic Regions
Cited by: 8
Author(s): Abdul Ghafar, Anson V. Koehler, Ross S. Hall, Charles G. Gauci, Robin B. Gasser, Abdul Jabbar
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8121941

Impacts of Wet Market Modernization Levels and Hygiene Practices on the Microbiome and Microbial Safety of Wooden Cutting Boards in Hong Kong
Cited by: 11
Author(s): Wing Yui Ngan, Subramanya Rao, Long Chung Chan, Patrick T. Sekoai, Yunfeng Pu, Yuan Yao, Aster Hei Yiu Fung, Olivier Habimana
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8122022

Comparative Microbiome and Metabolome Analyses of the Marine Tunicate Ciona intestinalis from Native and Invaded Habitats
Cited by: 15
Author(s): Caroline Utermann, Martina Blümel, Kathrin Busch, Larissa Buedenbender, Ya‐Ping Lin, Brad Haltli, Russell G. Kerr, Elizabeta Briski, Ute Hentschel, Deniz Taşdemir
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms9081752

Modulation of the Mucosa-Associated Microbiome Linked to the PTPN2 Risk Gene in Patients with Primary Sclerosing Cholangitis and Ulcerative Colitis
Cited by: 6
Author(s): Luisa Denoth, Pascal Juillerat, Andreas E. Kremer, Gerhard Rogler, Michael Scharl, Bahtiyar Yılmaz, Sena Bluemel
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms9010113

Metagenomics and Culture Dependent Insights into the Distribution of Firmicutes across Two Different Sample Types Located in the Black Hills Region of South Dakota, USA
Cited by: 7
Author(s): Tanvi Govil, Manasi Paste, Dipayan Samanta, Aditi David, Kian Mau Goh, Xiangkai Li, David R. Salem, Rajesh K. Sani
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms8101482

Seasonal Variations in Soil Microbiota Profile of Termite (Syntermes wheeleri) Mounds in the Brazilian Tropical Savanna
Cited by: 9
Author(s): Helena Ipe Pinheiro Guimaraes, Renata Henrique Santana, Rafaella Silveira Sousa, Otávio Henrique Bezerra Pinto, Betânia Ferraz Quirino, Cristine Chaves Barreto, Mercedes Maria da Cunha Bustamante
Software Mentions: 3
Published: about 6 years ago

10.3390/microorganisms8121861

Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community
Cited by: 3
Author(s): Claudia Sala, Hanne Mordhorst, Josephine Grützke, Annika Brinkmann, Thomas Nordahl Petersen, Casper Sahl Poulsen, Paul D. Cotter, Fiona Crispie, Richard J. Ellis, Gastone Castellani, Clara Amid, Mikhayil Hakhverdyan, Soizick Le Guyader, Gerardo Manfreda, Joël Mossong, Andreas Nitsche, Catherine Ragimbeau, Julien Schaeffer, Jørgen Schlundt, Moon Y. F. Tay, Frank Møller Aarestrup, René S. Hendriksen, Sünje Johanna Pamp, Alessandra De Cesare
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8050638

Intestinal Microbiota of Fattening Pigs Offered Non-Fermented and Fermented Liquid Feed with and without the Supplementation of Non-Fermented Coarse Cereals
Cited by: 14
Author(s): Sebastian Bunte, Richard Grone, Birgit Keller, Christoph A. Keller, Eric Galvez, Till Strowig, Josef Kamphues, Julia Hankel
Software Mentions: 3
Published: over 6 years ago

10.3390/microorganisms9081739

Minimal Associations between Short-Term Dietary Intake and Salivary Microbiome Composition
Cited by: 2
Author(s): Judith Kim, Minyi Lee, Brittany L. Baldwin-Hunter, Quinn S. Solfisburg, Charles J. Lightdale, Tal Korem, Chin Hur, Julian A. Abrams
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms9081734

Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata)
Cited by: 1
Author(s): Carolina Osuna‐Mascaró, Jorge Doña, Kevin P. Johnson, Manuel de Rojas
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms9071359

Climatic Zone and Soil Properties Determine the Biodiversity of the Soil Bacterial Communities Associated to Native Plants from Desert Areas of North-Central Algeria
Cited by: 17
Author(s): Elisa Bona, Nadia Massa, Omrane Toumatia, Giorgia Novello, Patrizia Cesaro, Valeria Todeschini, Lara Boatti, Flavio Mignone, Houda Titouah, Abdelghani Zitouni, Graziano Lingua, Francesco Vuolo, Elisa Gamalero
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9020370

Longitudinal Microbiome Analysis in a Dextran Sulfate Sodium-Induced Colitis Mouse Model
Cited by: 12
Author(s): Hyunjoon Park, Soyoung Yeo, Seok‐Won Kang, Chul Sung Huh
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9091843

Influence of Tall Fescue Epichloë Endophytes on Rhizosphere Soil Microbiome
Cited by: 9
Author(s): Kishan Mahmud, Kendall Lee, Nicholas S. Hill, Anaas Mergoum, Ali Missaoui
Software Mentions: 3
Published: about 5 years ago

10.3390/microorganisms8050642

Temporal Dynamics of Bacterial Communities in a Pilot-Scale Vermireactor Fed with Distilled Grape Marc
Cited by: 14
Author(s): María Gómez-Brandòn, Manuel Aira, Natielo Almeida Santana, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 3
Published: over 6 years ago

10.1111/mec.14895

Biodiversity–function relationships in methanogenic communities
Cited by: 25
Author(s): Pawel Sierocinski, Florian Bayer, Gabriel Yvon‐Durocher, Melia Burdon, Tobias Großkopf, Mark Alston, David Swarbreck, P. J. Hobbs, Orkun S. Soyer, Angus Buckling
Software Mentions: 3
Published: almost 8 years ago

10.3390/molecules25235638

Activity and Diversity of Microorganisms in Root Zone of Plant Species Spontaneously Inhabiting Smelter Waste Piles
Cited by: 15
Author(s): Sylwia Siebielec, Grzegorz Siebielec, Piotr Sugier, Małgorzata Woźniak, Jarosław Grządziel, Anna Gałązka, Tomasz Stuczyński
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13024-021-00427-6

Relationships of gut microbiota, short-chain fatty acids, inflammation, and the gut barrier in Parkinson’s disease
Cited by: 170
Author(s): Velma Aho, Madelyn C. Houser, Pedro Pereira, Jianjun Chang, Knut Rudi, Lars Paulín, Vicki Hertzberg, Petri Auvinen, Malú G. Tansey, Filip Scheperjans
Software Mentions: 3
Published: over 5 years ago

10.1186/s13567-019-0633-3

In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota
Cited by: 22
Author(s): Manuel A. Aguirre, Juhani Vuorenmaa, Eija Valkonen, Hannele Kettunen, Chana Callens, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 7 years ago

10.3390/v11040347

Dynamics of Bacterial and Viral Communities in Paddy Soil with Irrigation and Urea Application
Cited by: 15
Author(s): Yuting Li, Hao Sun, Wei Yang, Guanxiong Chen, Xu Hui
Software Mentions: 3
Published: over 7 years ago

10.20411/pai.v4i1.269

Microbiomes of Inflammatory Thoracic Aortic Aneurysms Due to Giant Cell Arteritis and Clinically Isolated Aortitis Differ From Those of Non-Inflammatory Aneurysms
Cited by: 18
Author(s): Ted M. Getz, Gary S. Hoffman, Roshan Padmanabhan, Alexandra Villa‐Forte, Eric E. Roselli, Eugene H. Blackstone, Douglas R. Johnston, Gösta Pettersson, Edward G. Soltesz, Lars Svensson, Leonard H. Calabrese, Alison Clifford, Charis Eng
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.2837

Exploring the cockatiel (<i>Nymphicus hollandicus</i>) fecal microbiome, bacterial inhabitants of a worldwide pet
Cited by: 19
Author(s): Luis David Alcaraz, Apolinar M. Hernández, Mariana Peimbert
Software Mentions: 3
Published: almost 10 years ago

10.7717/peerj.9015

Effects of biodegradable plastic film mulching on soil microbial communities in two agroecosystems
Cited by: 51
Author(s): Sreejata Bandopadhyay, Henry Y. Sintim, Jennifer M. DeBruyn
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.9424

An updated genetic marker for detection of Lake Sinai Virus and metagenetic applications
Cited by: 5
Author(s): Deborah D. Iwanowicz, Judy Wu‐Smart, Tuğçe Olgun, Matthew Smart, Clint R. V. Otto, Dawn Lopez, Jay D. Evans, Robert S. Cornman
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.3536

Effect of freshwater mussels on the vertical distribution of anaerobic ammonia oxidizers and other nitrogen-transforming microorganisms in upper Mississippi river sediment
Cited by: 21
Author(s): Ellen M. Black, Michael S. Chimenti, Craig L. Just
Software Mentions: 3
Published: about 9 years ago

10.7717/peerj.6090

Rapid increases in soil pH solubilise organic matter, dramatically increase denitrification potential and strongly stimulate microorganisms from the<i>Firmicutes</i>phylum
Cited by: 34
Author(s): Craig Anderson, Michelle E. Peterson, Rebekah A. Frampton, Simon Bulman, Sandi Keenan, D. Curtin
Software Mentions: 3
Published: almost 8 years ago

10.7717/peerj.2430

Environment and host species shape the skin microbiome of captive neotropical bats
Cited by: 46
Author(s): Virginie Lemieux-Labonté, Nicolas Tromas, B. Jesse Shapiro, François‐Joseph Lapointe
Software Mentions: 3
Published: about 10 years ago

10.7717/peerj.4991

Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
Cited by: 24
Author(s): Anthony Barboza, Victor Satler Pylro, Rodrigo Josemar Seminot Jacques, Paulo Ivonir Gubiani, Fernando Luíz Ferreira de Quadros, Júlio Kuhn da Trindade, Eric W. Triplett, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.11406

Shiftwork, functional bowel symptoms, and the microbiome
Cited by: 4
Author(s): Ann E. Rogers, Yi‐Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit, Simone A. Jarrett, Jennifer Christie, Timothy D. Read
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.659

The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Cited by: 83
Author(s): Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
Software Mentions: 3
Published: almost 12 years ago

10.7717/peerj.8147

Accumulation of di-2-ethylhexyl phthalate from polyvinyl chloride flooring into settled house dust and the effect on the bacterial community
Cited by: 6
Author(s): Samantha Velazquez, Chenyang Bi, Jeff Kline, Susie Nunez, Rich Corsi, Ying Xu, Suzanne L. Ishaq
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.10959

Diversity structure of the microbial communities in the guts of four neotropical termite species
Cited by: 8
Author(s): Surendra Vikram, Joel D. Arneodo, Javier Á. Calcagno, Maximiliano Ortiz, María Laura Mon, Clara Etcheverry, Don A. Cowan, Paola Talia
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.10695

Local dynamics of a white syndrome outbreak and changes in the microbial community associated with colonies of the scleractinian brain coral <i>Pseudodiploria strigosa</i>
Cited by: 16
Author(s): Patricia E. Thomé, Jacqueline Rivera-Ortega, Jenny Carolina Rodríguez‐Villalobos, Daniel Cerqueda‐García, Edgar O. Guzmán-Urieta, José Q. García-Maldonado, Natalia Carabantes, Eric Jordán-Dahlgren
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.9635

Spatial distribution of microbial communities among colonies and genotypes in nursery-reared <i>Acropora cervicornis</i>
Cited by: 14
Author(s): Nicole Miller, Paul Maneval, Carrie Manfrino, Thomas K. Frazer, Julie Meyer
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.3773

Canopy soil bacterial communities altered by severing host tree limbs
Cited by: 9
Author(s): Cody R. Dangerfield, Nalini M. Nadkarni, William J. Brazelton
Software Mentions: 3
Published: about 9 years ago