bioconductor: pathview | Projects

10.3389/fendo.2017.00099

Leptin Induces Mitosis and Activates the Canonical Wnt/β-Catenin Signaling Pathway in Neurogenic Regions of Xenopus Tadpole Brain
Cited by: 14
Author(s): Melissa Cui Bender, Christopher J. Sifuentes, Robert J. Denver
Software Mentions: 3
Published: over 7 years ago

10.3389/fendo.2021.664766

Collagen I Induces Preeclampsia-Like Symptoms by Suppressing Proliferation and Invasion of Trophoblasts
Cited by: 9
Author(s): Ying Feng, Xia Chen, Huiqiao Wang, Xueping Chen, Zixin Lan, Pan Li, Yingshi Cao, Mian Liu, Jin Lv, Yun Chen, Yu Wang, Chao Sheng, Yingying Huang, Ming Zhong, Zhijian Wang, Xiaojing Yue, Liping Huang
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2021.632512

Enhanced Glycolysis Is Required for Antileishmanial Functions of Neutrophils Upon Infection With Leishmania donovani
Cited by: 12
Author(s): Mareike Ohms, Carolina Ferreira, Hauke Busch, Inken Wohlers, Ana Cristina Guerra Souza, Ricardo Silvestre, Tamás Laskay
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2019.03103

Interleukin-2-Inducible T-Cell Kinase Deficiency Impairs Early Pulmonary Protection Against Mycobacterium tuberculosis Infection
Cited by: 15
Author(s): Lu Huang, Kaixiong Ye, Michael C McGee, Natalie F. Nidetz, Jessica Elmore, Candice B Limper, Teresa Southard, David G. Russell, Avery August, Weishan Huang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2019.00314

Effect of Compound Kushen Injection, a Natural Compound Mixture, and Its Identified Chemical Components on Migration and Invasion of Colon, Brain, and Breast Cancer Cell Lines
Cited by: 41
Author(s): Saeed Nourmohammadi, Thazin Nwe Aung, Jingang Cui, Jinxin V. Pei, Michael L. De Ieso, Yuka Harata-Lee, Zhibo Qu, David L. Adelson, Andrea J. Yool
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2021.690118

Identification of Tumor Necrosis Factor-Alpha (TNF-α) Inhibitor in Rheumatoid Arthritis Using Network Pharmacology and Molecular Docking
Cited by: 23
Author(s): Liang Bai, Hao Chen, Peng Zhou, Jun Yu
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2021.638792

Commonly and Specifically Activated Defense Responses in Maize Disease Lesion Mimic Mutants Revealed by Integrated Transcriptomics and Metabolomics Analysis
Cited by: 4
Author(s): Xiaohuan Mu, Jiankun Li, Zhuangzhuang Dai, XU Li-ping, Tianyuan Fan, Jie Teng, Mengyao Chen, Mingyue Gou
Software Mentions: 3
Published: over 3 years ago

10.1172/jci.insight.135576

Lack of miR-378 attenuates muscular dystrophy in mdx mice
Cited by: 18
Author(s): Paulina Podkalicka, Olga Mucha, Iwona Bronisz-Budzyńska, Magdalena Kozakowska, Katarzyna Pietraszek-Gremplewicz, Anna Cetnarowska, Urszula Głowniak-Kwitek, Karolina Bukowska-Straková, Maciej Cieśla, Maria Kulecka, Jerzy Ostrowski, Michał Mikula, Anna Potulska‐Chromik, Anna Kostera‐Pruszczyk, Alicja Józkowicz, Agnieszka Łoboda, Józef Dulak
Software Mentions: 3
Published: over 4 years ago

10.1016/j.jbc.2021.100968

PTEN regulates adipose progenitor cell growth, differentiation, and replicative aging
Cited by: 8
Author(s): Anna Kirstein, Stephanie Kehr, Michèle Nebe, Martha Hanschkow, Lisa A. G. Barth, Jana Lorenz, Melanie Penke, Jana Breitfeld, Diana Le Duc, Kathrin Landgraf, Antje Körner, Peter Kovacs, Peter F. Stadler, Wieland Kieß, Antje Garten
Software Mentions: 3
Published: over 3 years ago

10.1128/mSphere.00659-20

MARTX Toxin-Stimulated Interplay between Human Cells and Vibrio vulnificus
Cited by: 8
Author(s): Byoung Sik Kim, Jong-Hwan Kim, Sunghee Choi, Shinhye Park, Eun-Young Lee, Sung-Cheol Koh, Choong‐Min Ryu, Seon‐Young Kim, Myung Hee Kim
Software Mentions: 3
Published: about 4 years ago

10.7150/ijbs.40173

Knockdown of SMAD3 inhibits the growth and enhances the radiosensitivity of lung adenocarcinoma via p21 in vitro and in vivo
Cited by: 22
Author(s): Hao Niu, Yiwei Huang, Yan Li, Li Zhang, Mengnan Zhao, Tao Lu, Xiaodong Yang, Zhengcong Chen, Cheng Zhan, Yu Shi, Qun Wang
Software Mentions: 3
Published: almost 5 years ago

10.1155/2019/7106092

A Transcriptomic Analysis Reveals Diverse Regulatory Networks That Respond to Cold Stress in Strawberry (Fragaria×ananassa)
Cited by: 18
Author(s): Yong Zhang, Yunting Zhang, Yuanxiu Lin, Yunbo Luo, Xiaorong Wang, Bo Sun, Yan Wang, Mengyao Li, Haoru Tang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22094919

Genome-Wide Identification and Expression Profiling of the WOX Gene Family in Citrus sinensis and Functional Analysis of a CsWUS Member
Cited by: 9
Author(s): Faiza Shafique Khan, Ren‐Fang Zeng, Zhi-Meng Gan, Jin‐Zhi Zhang, Chun-Gen Hu
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2018.02403

Acute Toxoplasma Gondii Infection in Cats Induced Tissue-Specific Transcriptional Response Dominated by Immune Signatures
Cited by: 11
Author(s): Wei Cong, Tania Dottorini, Faraz Khan, Richard D. Emes, Fu-Kai Zhang, Chun-Xue Zhou, Jun-Jun He, Xiaoxuan Zhang, Hany M. Elsheikha, Xingquan Zhu
Software Mentions: 2
Published: about 6 years ago

10.1038/srep38864

Effect of dietary Astragalus Polysaccharide supplements on testicular miRNA expression profiles and enzymatic changes of breeder cocks
Cited by: 23
Author(s): Shengru Wu, Xiaochun Ren, Yulong Li, Wei Guo, Xinyu Lei, Junhu Yao, Xiaojun Yang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fcell.2021.694652

The Biological Function Delineated Across Pan-Cancer Levels Through lncRNA-Based Prognostic Risk Assessment Factors for Pancreatic Cancer
Cited by: 12
Author(s): Xu-Dong Tang, Mengyan Zhang, Liang Sun, Fei Xu, Xin Peng, Yan Zhang, Ying Deng, Shuliang Wu
Software Mentions: 2
Published: over 3 years ago

10.3389/fbioe.2020.00054

LINC00346 Acts as a Competing Endogenous RNA Regulating Development of Hepatocellular Carcinoma via Modulating CDK1/CCNB1 Axis
Cited by: 33
Author(s): Jinglan Jin, Hao Xu, Wanyu Li, Xiaotong Xu, Huan Liu, Wei Feng
Software Mentions: 2
Published: almost 5 years ago

10.3390/biom9020066

Genome-Wide Identification and Characterization of SQUAMOSA—Promoter-Binding Protein (SBP) Genes Involved in the Flowering Development of Citrus Clementina
Cited by: 15
Author(s): Ren‐Fang Zeng, Jingjing Zhou, Shengrui Liu, Zhi-Meng Gan, Jinzhi Zhang, Chun-Gen Hu
Software Mentions: 2
Published: almost 6 years ago

10.3390/biom11081092

Transcriptome Analysis Identifies Doublesex and Mab-3 Related Transcription Factor (DMRT3) in Nasal Polyp Epithelial Cells of Patients Suffering from Non-Steroidal Anti-Inflammatory Drug-Exacerbated Respiratory Disease (AERD)
Cited by: 2
Author(s): V.S. Priyadharshini, Marcos Alejandro Jiménez-Chobillón, Jos de Graaf, Raúl Porras-Gutiérrez-de-Velasco, Christina Gratziou, Fernando Ramírez-Jiménez, Luis M. Teran
Software Mentions: 2
Published: over 3 years ago

10.1093/bioinformatics/btx775

ASAR: visual analysis of metagenomes in R
Cited by: 5
Author(s): Askarbek Orakov, Nazgul Sakenova, Anatoly Sorokin, Igor Goryanin
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes12091369

Expression Profile of New Gene Markers and Signaling Pathways Involved in Immunological Processes in Human Cumulus-Oophorus Cells
Cited by: 3
Author(s): Błażej Chermuła, Greg Hutchings, Wiesława Kranc, Małgorzata Józkowiak, Karol Jopek, Boguslawa A. Stelmach, Paul Mozdziak, Leszek Pawełczyk, Hanna Piotrowska‐Kempisty, Robert Spaczyński, Bartosz Kempisty
Software Mentions: 2
Published: about 3 years ago

10.3389/fphar.2020.00485

Kunxian Capsule for Rheumatoid Arthritis: Inhibition of Inflammatory Network and Reducing Adverse Reactions Through Drug Matching
Cited by: 20
Author(s): Yujun Tang, Yi Zeng, Lin Li, Zhihua Xie, Chengping Wen, Lin Huang
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2021.651305

β-Caryophyllene Ameliorates MSU-Induced Gouty Arthritis and Inflammation Through Inhibiting NLRP3 and NF-κB Signal Pathway: In Silico and In Vivo
Cited by: 10
Author(s): Wan-Yang Li, Fan Yang, Jihua Chen, Guofeng Ren
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-020-6666-1

Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas
Cited by: 2
Author(s): Fatemeh Maghuly, Tamás Deák, Klemens Vierlinger, Stephan Pabinger, Hakim Tafer, Margit Laimer
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.01955

Microbial Communities Associated With Passive Acidic Abandoned Coal Mine Remediation
Cited by: 11
Author(s): Truc Ly, Justin Wright, Nicholas Weit, Christopher J. McLimans, Nikea Ulrich, Vasily Tokarev, Michelle M. Valkanas, Nancy Trun, Shawn Rummel, Christopher J. Grant, Regina Lamendella
Software Mentions: 2
Published: about 5 years ago

10.1186/s13020-020-00330-0

Transcriptomics- and metabolomics-based integration analyses revealed the potential pharmacological effects and functional pattern of in vivo Radix Paeoniae Alba administration
Cited by: 4
Author(s): Sining Wang, Huihua Chen, Yufan Zheng, Zhenyu Li, Baiping Cui, Pei Zhao, Jiali Zheng, Rong Lü, Ninghui Sun
Software Mentions: 2
Published: over 4 years ago

10.1016/j.celrep.2019.12.078

Probiotic Bacillus subtilis Protects against α-Synuclein Aggregation in C. elegans
Cited by: 98
Author(s): María Eugenia Goya, Feng Xue, Cristina Sampedro-Torres-Quevedo, Sofia Arnaouteli, Lourdes Riquelme-Dominguez, Andrés Romanowski, Jack Brydon, Kathryn L. Ball, Nicola R. Stanley‐Wall, Maria Doitsidou
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-84538-6

Pharmacological inhibition of tumor anabolism and host catabolism as a cancer therapy
Cited by: 7
Author(s): Alejandro Schcolnik‐Cabrera, Alma Chávez‐Blanco, Guadalupe Domínguez-Gómez, Mandy Juárez, Ariana Vargas‐Castillo, Rafael I. Ponce‐Toledo, Donna Lai, Hua Su, Armando R. Tovar, Nimbe Torres, Delia Pérez-Montiel, José Díaz‐Chávez, Alfonso Dueñas‐González
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0099420

Intracellular Bacteria Interfere with Dendritic Cell Functions: Role of the Type I Interferon Pathway
Cited by: 40
Author(s): Laurent Gorvel, Julien Textoris, Romain Banchereau, Amira Ben Amara, Wiwit Tantibhedhyangkul, Kristin von Bargen, Mignane Ka, Christian Capo, Éric Ghigo, Jean‐Pierre Gorvel, Jean‐Louis Mège
Software Mentions: 2
Published: over 10 years ago

10.1186/s12906-020-02909-4

Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Radix Achyranthis Bidentatae on Osteoarthritis
Cited by: 27
Author(s): Laigen Zhang, Xianglin Shi, Zhengquan Huang, Jun J. Mao, Wei Mei, Liang Ding, Li Zhang, Runlin Xing, Peimin Wang
Software Mentions: 2
Published: over 4 years ago

10.14814/phy2.13831

Effects of bone marrow-derived mesenchymal stromal cells on gene expression in human alveolar type II cells exposed to TNF-α , IL-1β , and IFN-γ
Cited by: 6
Author(s): Matthew Schwede, Erin M. Wilfong, Rachel L. Zemans, Patricia Lee, Claudia C. dos Santos, Xiaohui Fang, Michael A. Matthay
Software Mentions: 2
Published: over 6 years ago

10.1111/acel.13356

Bioenergetic and inflammatory systemic phenotypes in Alzheimer’s disease APOE ε4‐carriers
Cited by: 11
Author(s): Heather Wilkins, Xiaowan Wang, Blaise Menta, Scott J. Koppel, Rebecca Bothwell, Annette M. Becker, Heidi Anderson, Erich Schwartz, Dong Pei, Nanda Kumar Yellapu, Prabhakar Chalise, Cynthia M. Gouvion, Mohammad Haeri, Jeffrey M. Burns, Russell H. Swerdlow
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202500

Fighting the storm: could novel anti-TNFα and anti-IL-6 C. sativa cultivars tame cytokine storm in COVID-19?
Cited by: 24
Author(s): Anna Kovalchuk, Bo Wang, Dongping Li, Rocio Rodriguez-Juarez, Slava Ilnytskyy, Igor Kovalchuk, Olga Kovalchuk
Software Mentions: 2
Published: almost 4 years ago

10.1042/BSR20181369

Identification of candidate biomarkers associated with apoptosis in melanosis coli: GNG5, LPAR3, MAPK8, and PSMC6
Cited by: 13
Author(s): Xiaohang Hua, Jiangang Chen, Lingli Wu
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.203098

Revealing the therapeutic targets and molecular mechanisms of emodin-treated coronavirus disease 2019 via a systematic study of network pharmacology
Cited by: 13
Author(s): Haixia Du, Jiaqi Zhu, Jing Chen, Huifen Zhou, Jiehong Yang, Haitong Wan
Software Mentions: 2
Published: over 3 years ago

10.1186/s13072-018-0222-0

Cycles of gene expression and genome response during mammalian tissue regeneration
Cited by: 13
Author(s): Leonor Rib, Dominic Villeneuve, Shilpi Minocha, Viviane Praz, Nouria Hernandez, Nicolas Guex, Winship Herr
Software Mentions: 1
Published: about 6 years ago

10.1242/dmm.037887

Glucocorticoids inhibit macrophage differentiation towards a pro-inflammatory phenotype upon wounding without affecting their migration
Cited by: 60
Author(s): Yujia Xie, Sofie H. Tolmeijer, Jelle M. Oskam, Tijs Tonkens, Annemarie H. Meijer, Marcel J. M. Schaaf
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2021.638381

Microglial Nox2 Plays a Key Role in the Pathogenesis of Experimental Autoimmune Encephalomyelitis
Cited by: 13
Author(s): Chih Fen Hu, San‐Pin Wu, Gu‐Jiun Lin, Chi Chang Shieh, Chih Sin Hsu, Jing Wun Chen, Shih‐Heng Chen, Jau Shyong Hong, Shyi Jou Chen
Software Mentions: 1
Published: over 3 years ago

10.1186/s12967-021-02903-5

Identification of circRNA–miRNA–mRNA networks contributes to explore underlying pathogenesis and therapy strategy of gastric cancer
Cited by: 25
Author(s): Zhijie Dong, Zhaoyu Liu, Min Liang, Jinhui Pan, Min Lin, Hai Lin, Yuanwei Luo, Xinke Zhou, Wenqian Yao
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22147654

Placental Transcriptome Adaptations to Maternal Nutrient Restriction in Sheep
Cited by: 5
Author(s): Chelsie B. Steinhauser, C. A. Lambo, Katharine Askelson, Gregory W. Burns, Susanta K. Behura, Thomas E. Spencer, Fuller W. Bazer, M. Carey Satterfield
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13081761

Digital Gene Expression Analysis of Epithelioid and Sarcomatoid Mesothelioma Reveals Differences in Immunogenicity
Cited by: 4
Author(s): Luka Brčić, Alexander Mathilakathu, Robert Fred Henry Walter, Michael Wessolly, Elena Mairinger, Hendrik Beckert, Daniel Kreidt, Julia Steinborn, Thomas Hager, Daniel C. Christoph, Jens Kollmeier, Thomas Mairinger, Jeremias Wohlschlaeger, Kurt Werner Schmid, Sabrina Borchert, Fabian Mairinger
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-021-08012-3

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in human aortic dissection
Cited by: 19
Author(s): Hao Zhang, Ce Bian, Simei Tu, Fanxing Yin, Panpan Guo, Jian Zhang, Xiaotong Song, Qingyang Liu, Chen Chen, Yanshuo Han
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0236928

Gene expression profile analysis of the rabbit retinal vein occlusion model
Cited by: 8
Author(s): Takuma Neo, Makoto Gozawa, Yoshihiro Takamura, Masaru Inatani, Masaya Oki
Software Mentions: 1
Published: over 4 years ago

Projects: bioconductor: pathview

Papers Mentioning pathview 144