Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: pRoloc
https://packages.ecosyste.ms/registries/bioconductor.org/packages/pRoloc
A unifying bioinformatics framework for spatial proteomics
2 versions
Latest release: about 1 year ago
3 dependent packages
45,904 downloads total
Papers Mentioning pRoloc 12
10.1002/pmic.201400392
Visualization of proteomics data using R and BioconductorCited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: over 9 years ago
10.3389/fgene.2021.667936
Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During InfectionsCited by: 9
Author(s): Matineh Rahmatbakhsh, Alla Gagarinova, Mohan Babu
Software Mentions: 21
Published: over 3 years ago
10.12688/f1000research.14966.1
iSEE: Interactive SummarizedExperiment ExplorerCited by: 68
Author(s): Kévin Rue-Albrecht, Fédérico Marini, Charlotte Soneson, Aaron T. L. Lun
Software Mentions: 9
Published: over 6 years ago
10.12688/f1000research.10411.2
A Bioconductor workflow for processing and analysing spatial proteomics dataCited by: 23
Author(s): Lisa M. Breckels, Claire M. Mulvey, Kathryn S. Lilley, Laurent Gatto
Software Mentions: 5
Published: over 6 years ago
10.1016/j.chom.2020.09.011
A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein FunctionsCited by: 169
Author(s): Konstantin Barylyuk, Luděk Kořený, Huiling Ke, Simon Butterworth, Oliver M. Crook, Imen Lassadi, Vipul Gupta, Eelco C. Tromer, Tobias Mourier, Tim J. Stevens, Lisa M. Breckels, Arnab Pain, Kathryn S. Lilley, Ross F. Waller
Software Mentions: 3
Published: about 4 years ago
10.1016/j.cbpa.2018.11.015
Assessing sub-cellular resolution in spatial proteomics experimentsCited by: 28
Author(s): Laurent Guy, Lisa M. Breckels, Kathryn S. Lilley
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pcbi.1008288
A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detectionCited by: 16
Author(s): Oliver M. Crook, Aikaterini Geladaki, Daniel J.H. Nightingale, Owen L. Vennard, Kathryn S. Lilley, Laurent Gatto, Paul Kirk
Software Mentions: 2
Published: about 4 years ago
10.1093/bioinformatics/btu013
Mass-spectrometry-based spatial proteomics data analysis using <tt>pRoloc</tt> and <tt>pRolocdata</tt>Cited by: 80
Author(s): Laurent Gatto, Lisa M. Breckels, Samuel Wieczorek, Thomas Bürger, Kathryn S. Lilley
Software Mentions: 2
Published: almost 11 years ago
10.12688/f1000research.18636.1
A Bioconductor workflow for the Bayesian analysis of spatial proteomicsCited by: 23
Author(s): Oliver M. Crook, Lisa M. Breckels, Kathryn S. Lilley, Paul Kirk, Laurent Gatto
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0176462
Altered nucleocytoplasmic proteome and transcriptome distributions in an in vitro model of amyotrophic lateral sclerosisCited by: 17
Author(s): Jee Eun Kim, Yoon Ho Hong, Jin Young Kim, Gun Sang Jeon, Jung Hee Jung, Byung Nam Yoon, Sung Yeon Son, Kwang Woo Lee, Jong‐Il Kim, Jung Joon Sung
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pcbi.1006516
A Bayesian mixture modelling approach for spatial proteomicsCited by: 50
Author(s): Oliver M. Crook, Claire M. Mulvey, Paul Kirk, Kathryn S. Lilley, Laurent Gatto
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pcbi.1004920
Learning from Heterogeneous Data Sources: An Application in Spatial ProteomicsCited by: 42
Author(s): Lisa M. Breckels, Sean B. Holden, David Wojnar, Claire M. Mulvey, Andy Christoforou, Arnoud Groen, Matthew Trotter, Oliver Kohlbacher, Kathryn S. Lilley, Laurent Gatto
Software Mentions: 1
Published: over 8 years ago