bioconductor: oposSOM | Projects | Ecosyste.ms: Papers

10.3390/cells9030779

Transcriptomic Insights into Mechanisms of Early Seed Maturation in the Garden Pea (Pisum sativum L.)
Cited by: 12
Author(s): Yury V. Malovichko, O. Y. Shtark, Ekaterina N. Vasileva, Anton A. Nizhnikov, Kirill S. Antonets
Software Mentions: 10
Published: over 4 years ago

10.3390/cancers11081057

Mining of Self-Organizing Map Gene-Expression Portraits Reveals Prognostic Stratification of HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 21
Author(s): Laura D. Locati, Mara Serena Serafini, Maria Federica Iannò, Andrea Carenzo, Ester Orlandi, Carlo Resteghin, Stefano Cavalieri, Paolo Bossi, Silvana Canevari, Lisa Licitra, Loris De Cecco
Software Mentions: 9
Published: over 5 years ago

10.3390/genes10110875

The Role of Plasticity and Adaptation in the Incipient Speciation of a Fire Salamander Population
Cited by: 6
Author(s): Joana Sabino‐Pinto, Daniel J. Goedbloed, Eugenia Sanchez, Thomas Czypionka, Arne W. Nolte, Sebastian Steinfartz
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pgen.1009201

Genomic and transcriptomic landscape of conjunctival melanoma
Cited by: 14
Author(s): Katarina Cisarova, Marc Folcher, Ikram El Zaoui, Rosanna Pescini Gobert, Virginie G. Peter, Béryl Royer‐Bertrand, Léonidas Zografos, Ann Schalenbourg, Michaël Nicolas, Donata Rimoldi, Serge Leyvraz, Nicolò Riggi, Alexandre Moulin, Carlo Rivolta
Software Mentions: 7
Published: almost 4 years ago

10.1186/1471-2105-12-306

Expression cartography of human tissues using self organizing maps
Cited by: 71
Author(s): Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
Software Mentions: 5
Published: over 13 years ago

10.1371/journal.pone.0187572

Autoimmunity and autoinflammation: A systems view on signaling pathway dysregulation profiles
Cited by: 56
Author(s): Arsen Arakelyan, Lilit Nersisyan, David Poghosyan, Lusine Khondkaryan, Աննա Հակոբյան, Henry Löffler-Wirth, Evie Melanitou, Hans Binder
Software Mentions: 4
Published: about 7 years ago

10.3390/genes11070817

SOMmelier—Intuitive Visualization of the Topology of Grapevine Genome Landscapes Using Artificial Neural Networks
Cited by: 5
Author(s): Maria Nikoghosyan, Maria Schmidt, K. Margaryan, Henry Loeffler‐Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 3
Published: over 4 years ago

10.3390/cells10071718

Epigenetic Drifts during Long-Term Intestinal Organoid Culture
Cited by: 5
Author(s): Torsten Thalheim, Susann Siebert, Marianne Quaas, Maria Herberg, Michal R. Schweiger, Gabriela Aust, Joerg Galle
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-08016-z

Transcriptome profile of the sinoatrial ring reveals conserved and novel genetic programs of the zebrafish pacemaker
Cited by: 13
Author(s): Rashid Minhas, Henry Loeffler‐Wirth, Yusra Siddiqui, Tomasz Obrębski, Shikha Vashisht, Karim Abu Nahia, Aleksandra Paterek, Angelika Brzozowska, Łukasz Bugajski, Katarzyna Piwocka, Vladimir Korzh, Hans Binder, Cecilia Lanny Winata
Software Mentions: 3
Published: about 3 years ago

10.3389/fgene.2016.00079

Cartography of Pathway Signal Perturbations Identifies Distinct Molecular Pathomechanisms in Malignant and Chronic Lung Diseases
Cited by: 6
Author(s): Arsen Arakelyan, Lilit Nersisyan, Martin Petřek, Henry Löffler-Wirth, Hans Binder
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pbio.2003389

Aging alters the epigenetic asymmetry of HSC division
Cited by: 94
Author(s): Maria Carolina Florian, Markus Klose, Mehmet Saçma, Jelena Jablanovic, Luke Knudson, Kalpana Nattamai, Gina Marka, Angelika Vollmer, Karin Soller, Vadim Sakk, Nina Cabezas-Wallscheid, Yi Zheng, Medhanie Mulaw, Ingmar Glauche, Hartmut Geiger
Software Mentions: 3
Published: about 6 years ago

10.3390/cells8080870

Teratogenic Rubella Virus Alters the Endodermal Differentiation Capacity of Human Induced Pluripotent Stem Cells
Cited by: 14
Author(s): Nicole C. Bilz, Edith Willscher, Hans Binder, Janik Böhnke, Megan L. Stanifer, Denise Hübner, Steeve Boulant, Uwe G. Liebert, Claudia Claus
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-020-03806-w

oposSOM-Browser: an interactive tool to explore omics data landscapes in health science
Cited by: 10
Author(s): Henry Loeffler‐Wirth, Jasmin Reikowski, Siras Hakobyan, Jonas Wagner, Hans Binder
Software Mentions: 2
Published: about 4 years ago

10.1186/1756-0381-5-18

Mining SOM expression portraits: feature selection and integrating concepts of molecular function
Cited by: 51
Author(s): Henry Wirth, Martin von Bergen, Hans Binder
Software Mentions: 2
Published: about 12 years ago

10.3390/v13091764

The Evolving Faces of the SARS-CoV-2 Genome
Cited by: 14
Author(s): Maria Schmidt, Mamoona Arshad, Stephan H. Bernhart, Siras Hakobyan, Arsen Arakelyan, Henry Loeffler‐Wirth, Hans Binder
Software Mentions: 2
Published: about 3 years ago

10.3390/pharmaceutics11120677

Transcriptome-Guided Drug Repositioning
Cited by: 11
Author(s): Arsen Arakelyan, Lilit Nersisyan, Maria Nikoghosyan, Siras Hakobyan, Arman Simonyan, Lydia Hopp, Henry Loeffler‐Wirth, Hans Binder
Software Mentions: 2
Published: almost 5 years ago

10.1093/dnares/dsv014

Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in<i>Paramecium tetraurelia</i>
Cited by: 18
Author(s): Miriam Cheaib, Azim Dehghani Amirabad, Karl Nordström, Marcel H. Schulz, Martín Simón
Software Mentions: 2
Published: over 9 years ago

10.3389/fphys.2018.01180

The Diurnal Timing of Starvation Differently Impacts Murine Hepatic Gene Expression and Lipid Metabolism – A Systems Biology Analysis Using Self-Organizing Maps
Cited by: 10
Author(s): Christiane Rennert, Sebastian Vlaic, Eugenia Marbach-Breitrück, Carlo Thiel, Susanne Sales, Andrej Shevchenko, Rolf Gebhardt, Madlen Matz‐Soja
Software Mentions: 2
Published: about 6 years ago

10.3389/fsurg.2021.663377

Long Non-coding RNAs in Traumatic Brain Injury Accelerated Fracture Healing
Cited by: 2
Author(s): Guoning Guo, Yajun Gou, Xingyu Jiang, Shuhong Wang, Ruilie Wang, Changqiang Liang, Guang Yang, Tinggang Wang, Anyong Yu, Guofu Zhu
Software Mentions: 2
Published: over 3 years ago

10.3390/genes6041076

Epigenetic Heterogeneity of B-Cell Lymphoma: Chromatin Modifiers
Cited by: 14
Author(s): Lydia Hopp, Lilit Nersisyan, Henry Löffler-Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 2
Published: about 9 years ago

10.3390/genes6030812

Epigenetic Heterogeneity of B-Cell Lymphoma: DNA Methylation, Gene Expression and Chromatin States
Cited by: 28
Author(s): Lydia Hopp, Henry Löffler-Wirth, Hans Binder
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms22052551

Deciphering the Transcriptomic Heterogeneity of Duodenal Coeliac Disease Biopsies
Cited by: 9
Author(s): Johannes Wolf, Edith Willscher, Henry Loeffler‐Wirth, Maria Schmidt, Gunter Flemming, Marlen Zurek, Holm H. Uhlig, Norman Händel, Hans Binder
Software Mentions: 1
Published: over 3 years ago

10.3389/fdata.2020.548873

The Human Blood Transcriptome in a Large Population Cohort and Its Relation to Aging and Health
Cited by: 20
Author(s): Michael Schmidt, Lydia Hopp, Arsen Arakelyan, Holger Kirsten, Christoph Engel, Kerstin Wirkner, Knut Krohn, Ralph Burkhardt, Joachim Thiery, Markus Loeffler, Henry Loeffler‐Wirth, Hans Binder
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers13133198

High-Resolution Cartography of the Transcriptome and Methylome Landscapes of Diffuse Gliomas
Cited by: 5
Author(s): Edith Willscher, Lydia Hopp, Markus Kreuz, Maria Schmidt, Siras Hakobyan, Arsen Arakelyan, Bettina Hentschel, David Jones, Stefan M. Pfister, Markus Loeffler, Henry Loeffler‐Wirth, Hans Binder
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00394

Population Levels Assessment of the Distribution of Disease-Associated Variants With Emphasis on Armenians – A Machine Learning Approach
Cited by: 9
Author(s): Maria Nikoghosyan, Siras Hakobyan, Անահիտ Հովհաննիսյան, Henry Loeffler‐Wirth, Hans Binder, Arsen Arakelyan
Software Mentions: 1
Published: over 5 years ago

10.1186/s13073-019-0637-7

A modular transcriptome map of mature B cell lymphomas
Cited by: 31
Author(s): Henry Loeffler‐Wirth, Markus Kreuz, Lydia Hopp, Arsen Arakelyan, Andrea Haake, Sergio Cogliatti, Alfred C. Feller, Martin‐Leo Hansmann, Dido Lenze, Peter Möller, Hans Konrad Müller‐Hermelink, Erik Fortenbacher, Edith Willscher, German Ott, Andreas Rosenwald, Christiane Pott, Carsten Schwäenen, Heiko Trautmann, Swen Weßendorf, Harald Stein, Monika Szczepanowski, Lorenz Trümper, Michael Hummel, Wolfram Klapper, Reiner Siebert, Markus Loeffler, Hans Binder
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22031220

Coxsackievirus B3 Infection of Human iPSC Lines and Derived Primary Germ-Layer Cells Regarding Receptor Expression
Cited by: 2
Author(s): Janik Böhnke, Sandra Pinkert, Maria Schmidt, Hans Binder, Nicole C. Bilz, Matthias Jung, Uta Reibetanz, Antje Beling, Dan Rujescu, Claudia Claus
Software Mentions: 1
Published: almost 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: oposSOM

Papers Mentioning oposSOM 27