bioconductor: mixOmics | Projects

10.1186/s13040-015-0052-6

DNA microarray integromics analysis platform
Cited by: 11
Author(s): Tomasz Waller, Tomasz Gubała, Krzysztof Sarapata, Monika Piwowar, Wiktor Jurkowski
Software Mentions: 4
Published: over 9 years ago

10.3390/biology10070658

Targeted Lipidomic Analysis of Aqueous Humor Reveals Signaling Lipid-Mediated Pathways in Primary Open-Angle Glaucoma
Cited by: 7
Author(s): Nadezhda V. Azbukina, Dmitry V. Chistyakov, Sergei V. Goriainov, В. И. Котелин, Е. В. Федосеева, S. Yu. Petrov, Marina G. Sergeeva, Elena N. Iomdina, Evgeni Yu Zernii
Software Mentions: 4
Published: over 3 years ago

10.1093/bib/bbz121

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
Cited by: 43
Author(s): Anita Sathyanarayanan, Rohit Gupta, Erik W. Thompson, Dale R. Nyholt, Denis C. Bauer, Shivashankar H. Nagaraj
Software Mentions: 4
Published: almost 5 years ago

10.3390/metabo10060218

Age-Dependent Metabolic Profiles Unravel the Metabolic Relationships within and between Flax Leaves (Linum usitatissimum)
Cited by: 10
Author(s): Nicole Pontarin, Roland Molinié, David Mathiron, Job Tchoumtchoua, Solène Bassard, David Gagneul, Benjamin Thiombiano, Hervé Demailly, Jean-Xavier Fontaine, Xavier Guillot, Vivien Sarazin, Anthony Quéro, François Mesnard
Software Mentions: 4
Published: over 4 years ago

10.3390/metabo10060220

Non-Targeted Metabolite Profiles and Sensory Properties Elucidate Commonalities and Differences of Wines Made with the Same Variety but Different Cultivar Clones
Cited by: 6
Author(s): Álvaro Cuadros-Inostroza, Claudio Verdugo-Alegría, Lothar Willmitzer, Yerko Moreno-Simunovic, José G. Vallarino
Software Mentions: 4
Published: over 4 years ago

10.1007/s11306-017-1270-3

The dental calculus metabolome in modern and historic samples
Cited by: 43
Author(s): Irina M. Velsko, Katherine A. Overmyer, Camilla Speller, Lauren Klaus, Matthew J. Collins, Louise Loe, Laurent Frantz, Krithivasan Sankaranarayanan, Cecil M. Lewis, Juan Bautista Rodriguez Martinez, Eros Chaves, Joshua J. Coon, Greger Larson, Christina Warinner
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms8101550

Seasonal and Nutrient Supplement Responses in Rumen Microbiota Structure and Metabolites of Tropical Rangeland Cattle
Cited by: 19
Author(s): Gonzalo Martínez Fernández, Jinzhen Jiao, Jagadish Padmanabha, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: about 4 years ago

10.1002/1878-0261.12369

Metabolomic profiling of human lung tumor tissues – nucleotide metabolism as a candidate for therapeutic interventions and biomarkers
Cited by: 37
Author(s): Paula Moreno, Carla Jiménez‐Jiménez, Martín Garrido‐Rodriguez, M. Calderón-Santiago, Susana Molina, Maribel Lara‐Chica, Feliciano Priego‐Capote, A. Salvatierra, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.527

Metabolic fingerprinting of gilthead seabream (<i>Sparus aurata</i>) liver to track interactions between dietary factors and seasonal temperature variations
Cited by: 28
Author(s): Tomé S. Silva, Ana M. Rosa da Costa, Luı́s E.C. Conceição, Jorge Dias, Pedro M. Rodrigues, Nadège Richard
Software Mentions: 4
Published: about 10 years ago

10.3390/ph14070662

Insulin-Mimic Components in Acer truncatum Leaves: Bio-Guided Isolation, Annual Variance Profiling and Regulating Pathway Investigated by Omics
Cited by: 11
Author(s): Xiaoyue Zhang, Yihan Liu, Dazhi Liu, Jianing Xu, Qiang Zhang
Software Mentions: 4
Published: over 3 years ago

10.3390/plants9121809

Physico-Chemical Characteristics and Culturable Microbial Communities of Grape Berries Change Strongly during Noble Rot Development
Cited by: 3
Author(s): Júlia Hegyi-Kaló, Ádám István Hegyi, József Geml, Zsolt Zsófi, Xénia Pálfi, Kálmán Zoltán Váczy
Software Mentions: 4
Published: almost 4 years ago

10.3390/plants10010005

Single and Combined Abiotic Stress in Maize Root Morphology
Cited by: 11
Author(s): Rosa Vescio, Maria Rosa Abenavoli, Agostino Sorgonà
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1002223

Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health
Cited by: 35
Author(s): Melissa J. Morine, Audrey C. Tierney, Ben van Ommen, Hannelore Daniel, Sinéad Toomey, Ingrid M.F. Gjelstad, Isobel Claire Gormley, Pablo Pérez-Martı́nez, Christian A. Drevon, José López‐Miranda, Helen M. Roche
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0126911

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data
Cited by: 18
Author(s): David Wood, Kátia Nones, Anita L Steptoe, Angelika N. Christ, Ivon Harliwong, Felicity Newell, Timothy J. C. Bruxner, David Miller, Nicole Cloonan, Sean M. Grimmond
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0189677

Identifying maternal and infant factors associated with newborn size in rural Bangladesh by partial least squares (PLS) regression analysis
Cited by: 15
Author(s): Alamgir Kabir, Md. Jahanur Rahman, Abu Ahmed Shamim, Rolf Klemm, Alain Labrique, Mahbubur Rashid, Parul Christian, Keith P. West
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0212755

Comparative analysis of the transcriptome of the Amazonian fish species Colossoma macropomum (tambaqui) and hybrid tambacu by next generation sequencing
Cited by: 9
Author(s): Fátima Gomes, Luciana Watanabe, João L.S.G. Vianez, Márcio Roberto Teixeira Nunes, Jedson Ferreira Cardoso, Clayton Pereira Silva de Lima, Horácio Schneider, Iracilda Sampaio
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12113447

Convergence of Plasma Metabolomics and Proteomics Analysis to Discover Signatures of High-Grade Serous Ovarian Cancer
Cited by: 23
Author(s): Hee‐Sung Ahn, Jeonghun Yeom, Jeesuk Yu, Young-Il Kwon, Jae Hoon Kim, Kyunggon Kim
Software Mentions: 4
Published: about 4 years ago

10.1016/j.cell.2020.05.002

Metabolic Dynamics and Prediction of Gestational Age and Time to Delivery in Pregnant Women
Cited by: 127
Author(s): Liang Liang, Marie-Louise Hee Rasmussen, Brian D. Piening, Xiaotao Shen, Songjie Chen, Hannes L. Röst, John K. Snyder, Robert Tibshirani, Line Skotte, Norman Cy Lee, Kévin Contrepois, Bjarke Feenstra, Hanyah Zackriah, M Snyder, Mads Melbye
Software Mentions: 4
Published: over 4 years ago

10.12688/f1000research.11823.1

Analytical challenges of untargeted GC-MS-based metabolomics and the critical issues in selecting the data processing strategy
Cited by: 19
Author(s): Ting-Li Han, Yang Yang, Hua Zhang, KT Law
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.610798

State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing
Cited by: 140
Author(s): Michal Krassowski, Vivek Das, Shivani Sahu, Biswapriya B. Misra
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2021.635794

Multi-Transcript Level Profiling Revealed Distinct mRNA, miRNA, and tRNA-Derived Fragment Bio-Signatures for Coping Behavior Linked Haplotypes in HPA Axis and Limbic System
Cited by: 3
Author(s): Kevin Gley, Frieder Hadlich, Nares Trakooljul, Fiete Haack, Eduard Muráni, Ulrike Gimsa, Klaus Wimmers, Siriluck Ponsuksili
Software Mentions: 4
Published: over 3 years ago

10.3389/fnhum.2018.00226

Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring
Cited by: 42
Author(s): Daniel Stoessel, Jan‐Patrick Stellmann, Anne Willing, Birte Behrens, Sina Cathérine Rosenkranz, Sibylle Hodecker, Klarissa Hanja Stürner, Stefanie Reinhardt, Sabine Fleischer, Christian Deuschle, Walter Maetzler, Daniela Berg, Christoph Heesen, Dirk Walther, Nicolas Schauer, Manuel A. Friese, Ole Pleß
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.01576

Fecal Microbiota Transplant From Highly Feed Efficient Donors Affects Cecal Physiology and Microbiota in Low- and High-Feed Efficient Chickens
Cited by: 30
Author(s): Barbara U. Metzler‐Zebeli, Sina-Catherine Siegerstetter, Elizabeth Magowan, Peadar G. Lawlor, Niamh O’Connell, Qendrim Zebeli
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.00869

Taxon-Function Decoupling as an Adaptive Signature of Lake Microbial Metacommunities Under a Chronic Polymetallic Pollution Gradient
Cited by: 20
Author(s): Bachar Cheaib, Malo Le Boulch, Pierre-Luc Mercier, Nicolas Derôme
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.01697

Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania
Cited by: 11
Author(s): Jeremy R. Chen See, Nikea Ulrich, Hephzibah Nwanosike, Christopher J. McLimans, Vasily Tokarev, Justin Wright, Maria Fernanda Campa, Christopher J. Grant, Terry C. Hazen, Jonathan M. Niles, Daniel Ressler, Regina Lamendella
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.01030

Integrated Multi-Omics Analyses in Oncology: A Review of Machine Learning Methods and Tools
Cited by: 115
Author(s): Giovanna Nicora, Francesca Vitali, Arianna Dagliati, Nophar Geifman, Riccardo Bellazzi
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2020.572741

Effect of Applying Struvite and Organic N as Recovered Fertilizers on the Rhizosphere Dynamics and Cultivation of Lupine (Lupinus angustifolius)
Cited by: 15
Author(s): Ana A. Robles-Aguilar, Oliver Grunert, Emma Hernandez-Sanabria, Mohamed Mysara, Erik Meers, Nico Boon, Nicolai David Jablonowski
Software Mentions: 4
Published: about 4 years ago

10.1080/19490976.2021.1936378

Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: almost 4 years ago

10.1242/jeb.238915

Metabolic response of dolphins to short-term fasting reveals physiological changes that differ from the traditional fasting model
Cited by: 10
Author(s): Dorian S. Houser, Davina Derous, Alex Douglas, David Lusseau
Software Mentions: 4
Published: over 3 years ago

10.1007/s13238-019-0648-6

Core transcriptional signatures of phase change in the migratory locust
Cited by: 26
Author(s): Pengcheng Yang, Hou Li, Xianhui Wang, Le Kang
Software Mentions: 4
Published: over 5 years ago

10.1038/srep34055

Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology
Cited by: 142
Author(s): Yanfei Chen, Feng Ji, Jing Guo, Ding Shi, Daiqiong Fang, Lanjuan Li
Software Mentions: 4
Published: about 8 years ago

10.1186/s40478-021-01232-4

Metabolic and transcriptomic profiles of glioblastoma invasion revealed by comparisons between patients and corresponding orthotopic xenografts in mice
Cited by: 5
Author(s): Cristina Cudalbu, Pierre Bady, Marta Lai, Lijing Xin, Olga Gusyatiner, Marie‐France Hamou, Mario Lepore, Jean‐Philippe Brouland, Roy Thomas Daniel, Andreas F. Hottinger, Monika E. Hegi
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-22629-7

A Lachnospiraceae-dominated bacterial signature in the fecal microbiota of HIV-infected individuals from Colombia, South America
Cited by: 33
Author(s): Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Christian Mogollon, Mario Peña, Iván Portnoy, Jorge I. Vélez, Christian Cadena-Cruz, Yirys Díaz-Olmos, Leidy Hurtado-Gómez, Silvana Sanchez-Sit, Danitza Hernández, Irina Urruchurtu, Pierina Di-Ruggiero, Ella Guardo-García, Nury Torres, Oscar M. Vidal, Diego Viasus, Joseph F. Petrosino, Guillermo Cervantes-Acosta
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-29433-3

Using Multi-Scale Genetic, Neuroimaging and Clinical Data for Predicting Alzheimer’s Disease and Reconstruction of Relevant Biological Mechanisms
Cited by: 46
Author(s): Shashank Khanna, Daniel Domingo‐Fernándéz, Anandhi Iyappan, Mohammad Asif Emon, Martin Hofmann-Apitius, Holger Fröhlich
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-33950-6

Diversity of macaque microbiota compared to the human counterparts
Cited by: 37
Author(s): Zigui Chen, Yun Kit Yeoh, Michael K. Hui, Pak-Kin Wong, Max Kam-Kwan Chan, Margaret Ip, Jun Yu, Robert D. Burk, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-41843-5

Different bacterial and viral pathogens trigger distinct immune responses in a globally invasive ant
Cited by: 20
Author(s): Philip J. Lester, Kaitlin H. Buick, James W. Baty, Antoine Felden, John Haywood
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-54983-5

Plasma metabolomics in tuberculosis patients with and without concurrent type 2 diabetes at diagnosis and during antibiotic treatment
Cited by: 36
Author(s): Frank Vrieling, Bachti Alisjahbana, Edhyana Sahiratmadja, Reinout van Crevel, Amy C. Harms, Thomas Hankemeier, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-89002-z

Mechanical biofilm disruption causes microbial and immunological shifts in periodontitis patients
Cited by: 24
Author(s): William Johnston, Bob T. Rosier, Alejandro Artacho, Michael Paterson, Krystyna Piela, Christopher Delaney, Jason L. Brown, Gordon Ramage, Álex Mira, Shauna Culshaw
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-92053-x

Jejunal mucosa proteomics unravel metabolic adaptive processes to mild chronic heat stress in dairy cows
Cited by: 11
Author(s): Franziska Koch, Dirk Albrecht, Solvig Görs, Björn Kuhla
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.58597

The leukocyte non-coding RNA landscape in critically ill patients with sepsis
Cited by: 28
Author(s): Brendon P. Scicluna, Fabrice Uhel, Lonneke A. van Vught, Maryse A. Wiewel, Arie J. Hoogendijk, Ingelore Baessman, Marek Franitza, Peter Nürnberg, Janneke Horn, Olaf L. Cremer, Marc J. M. Bonten, Marcus J. Schultz, Tom van der Poll
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms19030666

Phenotyping of Chronic Obstructive Pulmonary Disease Based on the Integration of Metabolomes and Clinical Characteristics
Cited by: 34
Author(s): Kalle Kilk, Argo Aug, Aigar Ottas, Ursel Soomets, Siiri Altraja, Alan Altraja
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21124470

Differences between Well-Differentiated Neuroendocrine Tumors and Ductal Adenocarcinomas of the Pancreas Assessed by Multi-Omics Profiling
Cited by: 8
Author(s): Teresa Starzyńska, Jakub Karczmarski, Agnieszka Paziewska, Maria Kulecka, Katarzyna Kuśnierz, Natalia Żeber‐Lubecka, Filip Ambrożkiewicz, Michał Mikula, Beata Kos‐Kudła, Jerzy Ostrowski
Software Mentions: 4
Published: over 4 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: almost 4 years ago

10.3390/ijms22179566

Slow Off-Rate Modified Aptamer (SOMAmer) Proteomic Analysis of Patient-Derived Malignant Glioma Identifies Distinct Cellular Proteomes
Cited by: 6
Author(s): Thatchawan Thanasupawat, Aleksandra Głogowska, Chris D. Pascoe, S Krishnan, Maliha Tabassum Munir, Farhana Begum, Jason Beiko, Jerry Krcek, Marc R. Del Bigio, Marshall Pitz, Yaoqing Shen, Victor Spicer, Kevin M. Coombs, John Wilkins, Sabine Hombach‐Klonisch, Thomas Klonisch
Software Mentions: 4
Published: about 3 years ago

10.2196/14861

An Internet-Based Psychological Intervention With a Serious Game to Improve Vitality, Psychological and Physical Condition, and Immune Function in Healthy Male Adults: Randomized Controlled Trial
Cited by: 3
Author(s): Lemmy Schakel, Dieuwke S. Veldhuijzen, Henriët van Middendorp, Corine Prins, Anne M H F Drittij, Frank Vrieling, Leo G. Visser, Tom H. M. Ottenhoff, Simone A. Joosten, Andrea Evers
Software Mentions: 4
Published: over 4 years ago

10.3390/nu13062032

Gut Microbiota Profile and Its Association with Clinical Variables and Dietary Intake in Overweight/Obese and Lean Subjects: A Cross-Sectional Study
Cited by: 60
Author(s): Judit Companys, María José Gosalbes, Laura Pla‐Pagà, Lorena Calderón-Pérez, Elisabet Llauradó, Anna Pedret, Rosa M. Valls, Nuria Jiménez‐Hernández, Berner Andrée Sandoval-Ramírez, Josep Maria del Bas, Antoni Caimari, Laura Rubió, Rosa Solà
Software Mentions: 4
Published: over 3 years ago

10.1186/s12876-020-01444-3

In search for interplay between stool microRNAs, microbiota and short chain fatty acids in Crohn’s disease - a preliminary study
Cited by: 10
Author(s): Filip Ambrożkiewicz, Jakub Karczmarski, Maria Kulecka, Agnieszka Paziewska, Magdalena Niemira, Natalia Żeber‐Lubecka, Edyta Zagórowicz, Adam Krętowski, Jerzy Ostrowski
Software Mentions: 3
Published: about 4 years ago

10.1186/s12935-019-0744-y

Up-regulated lncRNA XIST contributes to progression of cervical cancer via regulating miR-140-5p and ORC1
Cited by: 66
Author(s): Xing Chen, Dongsheng Xiong, Liya Ye, Kai Wang, Lingfei Huang, Shuangshuang Mei, Jinhong Wu, Shanshan Chen, Xiaoli Lai, Lingzhi Zheng, Meifen Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.02144

Rabbit Microbiota Changes Throughout the Intestinal Tract
Cited by: 47
Author(s): María Velasco-Galilea, M. Piles, Marc Viñas, O. Rafel, Olga González‐Rodríguez, Miriam Guivernau, Juan Pablo Sánchez
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-020-03921-8

MiBiOmics: an interactive web application for multi-omics data exploration and integration
Cited by: 39
Author(s): Johanna Zoppi, Jean-François Guillaume, Michel Neunlist, Samuel Chaffron
Software Mentions: 3
Published: almost 4 years ago

10.1080/19490976.2021.1875109

Compensatory intestinal immunoglobulin response after vancomycin treatment in humans
Cited by: 6
Author(s): Torsten P. M. Scheithauer, Guido J. Bakker, Maaike Winkelmeijer, Mark Davids, Max Nieuwdorp, Daniël H. van Raalte, Hilde Herrema
Software Mentions: 3
Published: almost 4 years ago

10.3390/nu13030805

Analysis of Serum Fatty Acids Profile in Kidney Transplant Recipients
Cited by: 3
Author(s): Adriana Mika, Łukasz P. Haliński, Tomasz Śledziński, Sylwia Małgorzewicz, Paulina Wołoszyk, Jolanta Anna Dardzińska, Alicja Dębska‐Ślizień, Michael S. Chmielewski
Software Mentions: 3
Published: over 3 years ago

10.3390/foods9121885

Fatty Acid Composition and Volatile Profile of M. longissimus thoracis from Commercial Lambs Reared in Different Forage Systems
Cited by: 16
Author(s): Yangfan Ye, Graham T. Eyres, Mariza Gomes Reis, Nicola M. Schreurs, Patrick Silcock, Michael Agnew, Peggy A. Johnson, Paul Maclean, C.E. Realini
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmolb.2020.590842

Multi-Omics Approaches to Improve Mitochondrial Disease Diagnosis: Challenges, Advances, and Perspectives
Cited by: 16
Author(s): Justine Labory, Morgane Fierville, Samira Ait-El-Mkadem, Sylvie Bannwarth, Véronique Paquis‐Flucklinger, Silvia Bottini
Software Mentions: 3
Published: about 4 years ago

10.1186/s13068-014-0171-1

System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation
Cited by: 83
Author(s): Luís Valledor, Takeshi Furuhashi, Luis Recuenco-Muñoz, Stefanie Wienkoop, Wolfram Weckwerth
Software Mentions: 3
Published: almost 10 years ago

10.1002/jbm4.10478

Metabolic Alterations in Older Women With Low Bone Mineral Density Supplemented With <i>Lactobacillus reuteri</i>
Cited by: 14
Author(s): Peishun Li, Daniel Sundh, Boyang Ji, Dimitra Lappa, Lingqun Ye, Jens Nielsen, Mattias Lorentzon
Software Mentions: 3
Published: over 3 years ago

10.3390/foods9081059

Impact of Fermentation and Phytase Treatment of Pea-Oat Protein Blend on Physicochemical, Sensory, and Nutritional Properties of Extruded Meat Analogs
Cited by: 42
Author(s): Aleksei Kaleda, Karel Talvistu, Martti Tamm, Maret Viirma, Julia Rosend, Kristel Tanilas, Marie Kriisa, Natalja Part, Mari-Liis Tammik
Software Mentions: 3
Published: over 4 years ago

10.3389/fbioe.2020.00047

Metabolic Rearrangements Causing Elevated Proline and Polyhydroxybutyrate Accumulation During the Osmotic Adaptation Response of Bacillus megaterium
Cited by: 14
Author(s): Thibault Godard, Daniela Zühlke, Georg Richter, Melanie M. Wall, Manfred Rohde, Katharina Riedel, Ignacio Poblete‐Castro, Rainer Krull, Rebekka Biedendieck
Software Mentions: 3
Published: over 4 years ago

10.1111/jcmm.15837

Diagnostic potential of circulating cell‐free microRNAs for community‐acquired pneumonia and pneumonia‐related sepsis
Cited by: 19
Author(s): Stefanie Hermann, Florian Brandes, Benedikt Kirchner, Dominik Buschmann, Melanie Borrmann, Matthias Klein, Stefan Kotschote, Michael Bonin, Marlene Reithmair, Inès Kaufmann, Gustav Schelling, Michael W. Pfaffl
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0159548

Metabolic Profiles of Obesity in American Indians: The Strong Heart Family Study
Cited by: 14
Author(s): Qi Zhao, Yun Zhu, Lyle G. Best, Jason G. Umans, Karan Uppal, Vi Linh Tran, Dean P. Jones, Elisa T. Lee, Barbara V. Howard, Jinying Zhao
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0236853

Near-infrared spectroscopy outperforms genomics for predicting sugarcane feedstock quality traits
Cited by: 12
Author(s): Mateus Teles Vital Gonçalves, Gota Morota, Paulo Mafra de Almeida Costa, Pedro Marcus Pereira Vidigal, Márcio Henrique Pereira Barbosa, Luiz Alexandre Peternelli
Software Mentions: 3
Published: over 3 years ago

10.3390/jcm9092920

A Pilot Study on MicroRNA Profile in Tear Fluid to Predict Response to Anti-VEGF Treatments for Diabetic Macular Edema
Cited by: 9
Author(s): Hwei Wuen Chan, Binxia Yang, Wai P. Wong, Paul Blakeley, Ivan Seah, Queenie Shu Woon Tan, Haofei Wang, Mayuri Bhargava, Hazel Anne Lin, Charmaine Chai, Erlangga Ariadarma Mangunkusumo, Thet Naing, Yew Sen Yuen, Raman Sethi, Si Wang, Walter Hunziker, Lingam Gopal, Xinyi Su
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2021.689701

Rearrangements of Blood and Tissue Fatty Acid Profile in Colorectal Cancer - Molecular Mechanism and Diagnostic Potential
Cited by: 7
Author(s): Adriana Mika, Katarzyna Duzowska, Łukasz P. Haliński, Alicja Pakiet, Aleksandra Czumaj, Olga Rostkowska, Małgorzata Dobrzycka, Jarosław Kobiela, Tomasz Śledziński
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-11-499

Bi-directional gene set enrichment and canonical correlation analysis identify key diet-sensitive pathways and biomarkers of metabolic syndrome
Cited by: 21
Author(s): Melissa J. Morine, Jolene McMonagle, Sinéad Toomey, Clare M. Reynolds, A.P. Moloney, Isobel Claire Gormley, Peadar Ó Gaora, Helen M. Roche
Software Mentions: 3
Published: about 14 years ago

10.3389/fgene.2020.589231

Analysis of Pan-omics Data in Human Interactome Network (APODHIN)
Cited by: 7
Author(s): Nupur Biswas, Krishna Kumar, Sarpita Bose, Raisa Bera, Saikat Chakrabarti
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-85455-4

Aging selectively dampens oscillation of lipid abundance in white and brown adipose tissue
Cited by: 12
Author(s): Ntsiki M. Held, M. Renate Buijink, Hyung L. Elfrink, Sander Kooijman, Georges E. Janssens, Angela C. M. Luyf, Mia L. Pras‐Raves, Frédéric M. Vaz, Stephan Michel, Riekelt H. Houtkooper, Michel van Weeghel
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/3212878

Peripheral Blood Cells from Patients with Hodgkin’s and Diffuse Large B Cell Lymphomas May Be a Better Source of Candidate Diagnostic miRNAs Than Circulating miRNAs
Cited by: 0
Author(s): Ewa Paszkiewicz‐Kozik, Agnieszka Paziewska, Maria Kulecka, Michalina Dąbrowska, Anna Kluska, Aneta Bałabas, Magdalena Piątkowska, Filip Ambrożkiewicz, J. Tajer, W. Osiadacz, Joanna Romejko‐Jarosińska, Martyna Kotarska, Natalia Żeber‐Lubecka, Jakub Karczmarski, Lidia Popławska, Michał Mikula, Piotr Rutkowski, Jan Walewski, Jerzy Ostrowski
Software Mentions: 3
Published: almost 4 years ago

10.3390/metabo7030044

Impact of Soil Warming on the Plant Metabolome of Icelandic Grasslands
Cited by: 10
Author(s): Albert Gargallo‐Garriga, Marta Ayala-Roque, Jordi Sardans, Mireia Bartrons, Víctor Granda, Bjarni D. Sigurðsson, Niki I. W. Leblans, Michal Oravec, Otmar Urban, Ivan A. Janssens, Josep Peñuelas
Software Mentions: 3
Published: about 7 years ago

10.3389/fphar.2020.01219

CFTR Modulator Therapy Enhances Peripheral Blood Monocyte Contributions to Immune Responses in People With Cystic Fibrosis
Cited by: 24
Author(s): Katherine B. Hisert, Timothy P. Birkland, Kelly Q. Schoenfelt, Matthew E. Long, Brenda Grogan, Suzanne Carter, W. Conrad Liles, Edward F. McKone, Lev Becker, Anne M. Manicone, Sina A. Gharib
Software Mentions: 3
Published: over 4 years ago

10.3390/vaccines8010004

Systems Vaccinology for a Live Attenuated Tularemia Vaccine Reveals Unique Transcriptional Signatures That Predict Humoral and Cellular Immune Responses
Cited by: 21
Author(s): Muktha S. Natrajan, Nadine Rouphael, Lilin Lai, Dmitri Kazmin, Travis L. Jensen, David S. Weiss, Chris Ibegbu, Marcelo B. Sztein, William F. Hooper, Heather Hill, Evan J. Anderson, Robert A. Johnson, Patrick Sanz, Bali Pulendran, Johannes Goll, Mark J. Mulligan
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.isci.2021.102900

Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome
Cited by: 22
Author(s): Shirley Bikel, Gamaliel López-Leal, Fernanda Cornejo‐Granados, Luigui Gallardo-Becerra, Rodrigo García-López, F. Sánchez, Edgar Equihua-Medina, Juan Pablo Ochoa‐Romo, Blanca E. López-Contreras, Samuel Canizales‐Quinteros, Abigail Hernández-Reyna, Alfredo Mendoza-Vargas, Adrián Ochoa‐Leyva
Software Mentions: 3
Published: over 3 years ago

10.1038/srep14337

A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation
Cited by: 10
Author(s): Wenguang Shao, Min Zhang, Henry H N Lam, S. S. Lau
Software Mentions: 3
Published: about 9 years ago

10.3390/microorganisms8010111

Bioregional Alterations in Gut Microbiome Contribute to the Plasma Metabolomic Changes in Pigs Fed with Inulin
Cited by: 31
Author(s): Weida Wu, Li Zhang, Bing Xia, Shouwei Tang, Lei Liu, Jingjing Xie, Hongfu Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1128/mSphere.00104-20

HIV Is Associated with Modified Humoral Immune Responses in the Setting of HIV/TB Coinfection
Cited by: 13
Author(s): Esther van Woudenbergh, Edward B. Irvine, Leela Davies, Marwou de Kock, Willem A. Hanekom, Cheryl L. Day, Sarah M. Fortune, Galit Alter
Software Mentions: 3
Published: over 4 years ago

10.1038/srep34668

Pre- and post-weaning diet alters the faecal metagenome in the cat with differences in vitamin and carbohydrate metabolism gene abundances
Cited by: 22
Author(s): Wayne Young, Christina D. Moon, David G. Thomas, Nick Cave, Emma N. Bermingham
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2018.00485

Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata
Cited by: 39
Author(s): Monica Escandón, Mónica Meijón, Luís Valledor, Jesús Pascual, Glória Pinto, María Jesús Cañal
Software Mentions: 3
Published: over 6 years ago

10.1007/s00248-018-1252-7

Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild
Cited by: 33
Author(s): Andrea M. Tarnecki, Nathan P. Brennan, Ryan W. Schloesser, Nicole R. Rhody
Software Mentions: 3
Published: about 6 years ago

10.1038/s41397-021-00237-5

Gene expression signatures predict response to therapy with growth hormone
Cited by: 1
Author(s): Adam Stevens, Philip Murray, Chiara De Leonibus, Terence Garner, Ekaterina Koledova, Geoffrey Ambler, Klaus Kapelari, Gerhard Binder, Mohamad Maghnie, Stefano Zucchini, Elena Bashnina, Julia Skorodok, Diego Yeste, Alicia Belgorosky, Juan-Pedro Lopez Siguero, Régis Coutant, Eirik Vangsøy-Hansen, Lars Hagenäs, Jovanna Dahlgren, Cheri Deal, Pierre Chatelain, Peter Clayton
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-04423-z

Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses
Cited by: 12
Author(s): BenoÃ®t. Sotton, Alain Paris, Séverine Le Manach, Alain Blond, Gérard Lacroix, Alexis Millot, Clément Duval, Hélène Huet, Qun Qiao, Sophie Labrut, Giovanni Chiapetta, Joëlle Vinh, Arnaud Catherine, Benjamin Marie
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2017.02130

Characterization of the Primary Metabolome of Brachystegia boehmii and Colophospermum mopane under Different Fire Regimes in Miombo and Mopane African Woodlands
Cited by: 7
Author(s): Jossias A. Duvane, Tiago F. Jorge, Ivete Maquia, Natasha Ribeiro, Ana I. Ribeiro‐Barros, Carla António
Software Mentions: 3
Published: almost 7 years ago

10.12688/wellcomeopenres.16336.2

Cardiovascular disease risk and pathophysiology in South Asians: can longitudinal multi-omics shed light?
Cited by: 4
Author(s): Yan V. Sun, Chang Liu, Lisa R. Staimez, Mohammed K. Ali, Howard H. Chang, Dimple Kondal, Shivani A. Patel, Dean P. Jones, Viswanathan Mohan, Nikhil Tandon, Dorairaj Prabhakaran, Arshed A. Quyyumi, K.M. Venkat Narayan, Anurag Agrawal
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2021.681979

Two Main Biosynthesis Pathways Involved in the Synthesis of the Floral Aroma of the Nacional Cocoa Variety
Cited by: 8
Author(s): Kelly Colonges, Juan Carlos Jiménez, Alejandra Saltos, Edward Seguine, Rey Gastón Loor Solórzano, Olivier Fouet, Xavier Argout, Sophie Assemat, Fabrice Davrieux, Emile Cros, Renaud Boulanger, Claire Lanaud
Software Mentions: 3
Published: about 3 years ago

10.1002/ece3.7229

Community science data suggests that urbanization and forest habitat loss threaten aphidophagous native lady beetles
Cited by: 12
Author(s): Mary M. Gardiner, Kayla I. Perry, Christopher B. Riley, Katherine J. Turo, Yvan A. Delgado de la flor, Frances S. Sivakoff
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.102736

Anesthesia and surgery induce age-dependent changes in behaviors and microbiota
Cited by: 46
Author(s): Ning Liufu, Ling Liu, Shiqian Shen, Zengliang Jiang, Yuanlin Dong, Yanyan Wang, Deborah J. Culley, Gregory Crosby, Minghui Cao, Yuan Shen, Edward R. Marcantonio, Zhongcong Xie, Yiying Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-018-24978-9

Relationships between digestive efficiency and metabolomic profiles of serum and intestinal contents in chickens
Cited by: 20
Author(s): Stéphane Beauclercq, Lydie Nadal-Desbarats, Christelle Hennequet-Antier, Irène Gabriel, Sophie Tesseraud, Fanny Calenge, Elisabeth Le Bihan‐Duval, Sandrine Mignon-Grasteau
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-26343-2

Acrylamide acute neurotoxicity in adult zebrafish
Cited by: 56
Author(s): Melissa Faria, Tamar Ziv, Cristian Gómez‐Canela, Shani Ben-Lulu, Eva Prats, Karen Adriana Novoa-Luna, Arie Admon, Benjamı́n Piña, Romà Tauler, Leobardo Manuel Gómez-Oliván, Demetrio Raldúa
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-27964-3

Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropics
Cited by: 14
Author(s): Emiro Buendía, Josefina Zakzuk, Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Luis Caraballo
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0237400

Whole-blood transcriptome profiling reveals signatures of metformin and its therapeutic response
Cited by: 14
Author(s): Monta Ustinova, Laura Ansone, Ivars Silamiķelis, Vita Rovīte, Ilze Elbere, Laila Silamiķele, Ineta Kalniņa, Dāvids Fridmanis, Jeļizaveta Sokolovska, Ilze Konrāde, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0246679

Effects of glyphosate residues and different concentrate feed proportions in dairy cow rations on hepatic gene expression, liver histology and biochemical blood parameters
Cited by: 11
Author(s): Ann-Katrin Heymann, Karina Schnabel, Fabian Billenkamp, Susanne Bühler, Jana Frahm, Susanne Kersten, Liane Hüther, Ulrich Meyer, Dirk von Soosten, Nares Trakooljul, Jens Peter Teifke, Sven Dänicke
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12864-020-07049-0

Reduced phosphorus intake throughout gestation and lactation of sows is mitigated by transcriptional adaptations in kidney and intestine
Cited by: 3
Author(s): Aisanjiang Wubuli, Christian Gerlinger, Henry Reyer, Michael Oster, Eduard Muráni, Nares Trakooljul, Siriluck Ponsuksili, Petra Wolf, Klaus Wimmers
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0254874

Compositional analysis of ruminal bacteria from ewes selected for somatic cell score and milk persistency
Cited by: 14
Author(s): Guillermo Martinez Boggio, Annabelle Troegeler‐Meynadier, Pepus Daunis‐i‐Estadella, Christel Marie-Etancelin
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0105412

Quantitative Profiling of Polar Metabolites in Herbal Medicine Injections for Multivariate Statistical Evaluation Based on Independence Principal Component Analysis
Cited by: 25
Author(s): Miaomiao Jiang, Yujiao Jiao, Yuefei Wang, Lei Xu, Meng Wang, Buchang Zhao, Lifu Jia, Hao Pan, Yan Zhu, Xiumei Gao
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2020.00659

Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
Cited by: 43
Author(s): Marina Martínez-Álvaro, Marc Auffret, Robert D. Stewart, Richard J. Dewhurst, Carol-Anne Duthie, J. A. Rooke, Robert John Wallace, Barbara Shih, Tom C. Freeman, Mick Watson, R. Roehe
Software Mentions: 3
Published: over 4 years ago

10.5713/ajas.19.0427

Effects of multi-strain probiotic supplementation on intestinal microbiota, tight junctions, and inflammation in young broiler chickens challenged with Salmonella enterica subsp. enterica
Cited by: 23
Author(s): Chi Huan Chang, Po-Yun Teng, Tzu-Tai Lee, Bin Yu
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-018-31770-2

Characterisation and functional predictions of canine long non-coding RNAs
Cited by: 24
Author(s): Céline Le Béguec, Valentin Wucher, Laëtitia Lagoutte, Édouard Cadieu, Nadine Botherel, BenoÃ®t. Hédan, Clotilde De Brito, Anne-Sophie Guillory, Catherine André, Thomas Derrien, Christophe Hitte
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.101871

Anesthesia and surgery induce cognitive dysfunction in elderly male mice: the role of gut microbiota
Cited by: 46
Author(s): Gaofeng Zhan, Hua Duan, Niannian Huang, Yue Wang, Shan Li, Zhiqiang Zhou, Ning Yang, Ruiwei Jiang, Bin Zhu, Ling Yang, Yu Fan, Hui Xu, Chun Yang, Ailin Luo
Software Mentions: 3
Published: over 5 years ago

10.1186/s12986-018-0296-5

Metabolomic profiles associated with bone mineral density in US Caucasian women.
Cited by: 42
Author(s): Qi Zhao, Hui Shen, Kuan-Jui Su, Ji Gang Zhang, Qing Tian, Liang Zhao, Chuan Qiu, Zhang Qiang, Timothy J. Garrett, Jiawang Liu, Hong Wen Deng
Software Mentions: 3
Published: almost 7 years ago

10.3390/metabo8030050

Potential Metabolomic Linkage in Blood between Parkinson’s Disease and Traumatic Brain Injury
Cited by: 14
Author(s): Massimo S. Fiandaca, Thomas Groß, Thomas M. Johnson, Michele T.M. Hu, Samuel Evetts, Richard Wade‐Martins, Kian Merchant‐Borna, Jeffrey J. Bazarian, Amrita K. Cheema, Mark Mapstone, Howard J. Federoff
Software Mentions: 3
Published: about 6 years ago

10.1186/1471-2164-14-894

The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers
Cited by: 36
Author(s): Núria Mach, Yu Tang Gao, Gaëtan Lemonnier, Jérôme Lecardonnel, Isabelle P. Oswald, Jordi Estellé, Claire Rogel‐Gaillard
Software Mentions: 3
Published: almost 12 years ago

Projects: bioconductor: mixOmics

Papers Mentioning mixOmics 375