Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limmaGUI

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limmaGUI

GUI for limma Package With Two Color Microarrays
1 version
Latest release: about 1 year ago
47,192 downloads total

Papers Mentioning limmaGUI 21

10.1186/1471-2105-16-S11-S2

VisRseq: R-based visual framework for analysis of sequencing data
Cited by: 59
Author(s): Hamid Younesy, Torsten B. Möller, Matthew C. Lorincz, Mehdi Karimi, Steven J.M. Jones
Software Mentions: 15
Published: over 9 years ago

10.1186/1471-2105-10-74

RGG: A general GUI Framework for R scripts
Cited by: 7
Author(s): Ilhami Visne, Erkan Dilaveroǧlu, Klemens Vierlinger, Martin Lauss, Ahmet Yıldız, Andreas Weinhäusel, Christa Noehammer, Friedrich Leisch, Albert Kriegner
Software Mentions: 11
Published: over 15 years ago

10.1186/gb-2008-9-7-r118

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
Cited by: 86
Author(s): Vu T. Chu, Raphaël Gottardo, Adrian E. Raftery, Roger E. Bumgarner, Ka Yee Yeung
Software Mentions: 7
Published: almost 17 years ago

10.1186/1471-2105-7-467

Goulphar: rapid access and expertise for standard two-color microarray normalization methods
Cited by: 55
Author(s): Sophie Lemoine, Florence Combes, Nicolas Servant, Stéphane Le Crom
Software Mentions: 6
Published: about 18 years ago

10.1128/mSphere.00167-17

Adaptive Mistranslation Accelerates the Evolution of Fluconazole Resistance and Induces Major Genomic and Gene Expression Alterations in Candida albicans
Cited by: 25
Author(s): Tobias Weil, Rodrigo Santamaría, Wanseon Lee, Johan Rung, Noemi Tocci, Darren Abbey, Ana R. Bezerra, Laura Carreto, Gabriela Moura, Mònica Bayés, Marta Gut, Attila Csikász‐Nagy, Duccio Cavalieri, Judith Berman, Manuel A. S. Santos
Software Mentions: 6
Published: about 7 years ago

10.1093/gigascience/gix015

Enhancing knowledge discovery from cancer genomics data with Galaxy
Cited by: 7
Author(s): Marco A. Albuquerque, Bruno M. Grande, Elie Ritch, Prasath Pararajalingam, Selin Jessa, Martin Krzywinski, Jasleen K. Grewal, Sohrab P. Shah, Paul C. Boutros, Ryan D. Morin
Software Mentions: 4
Published: over 7 years ago

10.1186/1741-7007-10-55

Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast
Cited by: 31
Author(s): João A. Paredes, Laura Carreto, João Simões, Ana R. Bezerra, Ana Catarina Gomes, Rodrigo Santamaría, Misha Kapushesky, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 3
Published: over 12 years ago

10.1186/1746-4811-6-10

SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea
Cited by: 15
Author(s): Nanette Coetzer, Inge Gazendam, D. Oelofse, David Kenneth Berger
Software Mentions: 3
Published: over 14 years ago

10.1186/1742-2094-5-48

Neurological and behavioral abnormalities, ventricular dilatation, altered cellular functions, inflammation, and neuronal injury in brains of mice due to common, persistent, parasitic infection
Cited by: 175
Author(s): Gretchen Hermes, James W. Ajioka, Krystyna A. Kelly, Ernest Mui, Fiona Roberts, Kristen Kasza, Thomas Mayr, Michael J. Kirisits, Robert L. Wollmann, David J. P. Ferguson, Craig W. Roberts, Jong Hee Hwang, Toria Trendler, Richard P. Kennan, Yasuhiro Suzuki, Catherine A. Reardon, William F. Hickey, Lieping Chen, Rima McLeod
Software Mentions: 2
Published: about 16 years ago

10.1186/1475-2875-11-265

Remarkable stability in patterns of blood-stage gene expression during episodes of non-lethal Plasmodium yoelii malaria
Cited by: 4
Author(s): Amy Cernetich-Ott, Thomas M. Daly, Akhil B. Vaidya, Lawrence W. Bergman, James M. Burns
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pgen.1002187

Adaptations to Endosymbiosis in a Cnidarian-Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications
Cited by: 92
Author(s): Philippe Ganot, Aurélie Moya, Virginie Magnone, Denis Allemand, Paola Furla, Cécile Sabourault
Software Mentions: 2
Published: over 13 years ago

10.3389/fphys.2019.01171

Cold Induced Depot-Specific Browning in Ferret Aortic Perivascular Adipose Tissue
Cited by: 6
Author(s): Bàrbara Reynés, Evert M. van Schothorst, Jaap Keijer, E Ceresi, Paula Oliver, Andreu Palou
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.01006

Key Components of Different Plant Defense Pathways Are Dispensable for Powdery Mildew Resistance of the Arabidopsis mlo2 mlo6 mlo12 Triple Mutant
Cited by: 35
Author(s): Harald Kühn, Justine Lorek, Mark Kwaaitaal, Chiara Consonni, Katia Becker, Cristina Micali, Emiel Ver Loren van Themaat, Paweł Bednarek, Tom M. Raaymakers, Michela Appiano, Yuling Bai, Dorothea Meldau, Stephani Baum, Uwe Conrath, Ivo Feußner, Ralph Panstruga
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2017.00679

Guanabenz Prevents d-Galactosamine/Lipopolysaccharide-Induced Liver Damage and Mortality
Cited by: 15
Author(s): Jessica Perego, Clarisse Bourbon, Lionel Chasson, Caroline Laprie, Lionel Spinelli, Voahirana Camosseto, Evelina Gatti, Philippe Pierre
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-213X-9-20

Global comparative transcriptome analysis of cartilage formation in vivo
Cited by: 70
Author(s): Trevor L. Cameron, Daniele Belluoccio, Peter G. Farlie, Bent Brachvogel, John F. Bateman
Software Mentions: 1
Published: over 15 years ago

10.1186/ar2917

S100A8 and S100A9 in experimental osteoarthritis
Cited by: 71
Author(s): Hala Zreiqat, Daniele Belluoccio, Margaret M. Smith, Richard Wilson, Lynn Rowley, K. Jones, Yogambha Ramaswamy, Thomas Vogl, Johannes Roth, John F. Bateman, Christopher B. Little
Software Mentions: 1
Published: almost 15 years ago

10.1186/gb-2007-8-11-r240

GeneChip analysis of human embryonic stem cell differentiation into hemangioblasts: an in silico dissection of mixed phenotypes
Cited by: 25
Author(s): Shi Jiang Lu, Jennifer Hipp, Qiang Feng, Jason Hipp, Robert Lanza, Anthony Atala
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pbio.0030229

Population Fitness and the Regulation of Escherichia coli Genes by Bacterial Viruses
Cited by: 89
Author(s): Ying Chen, Ido Golding, Shujiro Sawai, Ling Guo, Edward C. Cox
Software Mentions: 1
Published: over 19 years ago

10.1242/bio.037085

Transcriptomic analysis of <i>Spodoptera frugiperda</i> Sf9 cells resistant to <i>Bacillus thuringiensis</i> Cry1Ca toxin, reveals that extracellular Ca2+, Mg2+ and production of cAMP are involved in toxicity
Cited by: 7
Author(s): Claude Castella, David Pauron, Frédérique Hilliou, Van Tran Trang, Nathalie Zucchini-Pascal, Armel Gallet, Pierre Barbero
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0020644

Beta-Carotene Reduces Body Adiposity of Mice via BCMO1
Cited by: 135
Author(s): Jaume Amengual, Erwan Gouranton, Yvonne G. J. van Helden, Susanne Hessel, Joan Ribot, Evelien Kramer, Beata Kieć‐Wilk, Urszula Raźny, Georg Lietz, Adrian Wyss, A. Dembińska-Kieć, Andreu Palou, Jaap Keijer, Jean‐François Landrier, M. Luisa Bonet, Johannes von Lintig
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0051588

Quercetin Induces Hepatic Lipid Omega-Oxidation and Lowers Serum Lipid Levels in Mice
Cited by: 65
Author(s): E.F. Hoek–van den Hil, Jaap Keijer, Annelies Bunschoten, Jacques Vervoort, Barbora Staňková, Melissa Bekkenkamp, Laure Herreman, D.P. Venema, P.C.H. Hollman, E Tvrzická, Ivonne M.C.M. Rietjens, Evert M. van Schothorst
Software Mentions: 1
Published: almost 12 years ago