Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: hopach

https://packages.ecosyste.ms/registries/bioconductor.org/packages/hopach

Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
1 version
Latest release: about 1 year ago
5 dependent packages
59,687 downloads total

Papers Mentioning hopach 7

10.1371/journal.pone.0091828
Characterization of Changes in Gene Expression and Biochemical Pathways at Low Levels of Benzene Exposure
Cited by: 36
Author(s): Reuben Thomas, Alan Hubbard, Cliona M. McHale, Luoping Zhang, Stephen M. Rappaport, Qing Lan, Nathaniel Rothman, Roel Vermeulen, Kathryn Z. Guyton, Jennifer Jinot, Babasaheb Sonawane, Martyn T. Smith
Software Mentions: 5
Published: over 10 years ago
10.3390/ijerph9072479
Using Bioinformatic Approaches to Identify Pathways Targeted by Human Leukemogens
Cited by: 6
Author(s): Reuben Thomas, Jimmy Phuong, Cliona M. McHale, Luoping Zhang
Software Mentions: 5
Published: over 12 years ago
10.1080/15384101.2016.1261765
Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletion
Cited by: 24
Author(s): Maria Sokolova, Mikko Turunen, Oliver Mortusewicz, Teemu Kivioja, Patrick Herr, Anna Vähärautio, Mikael Björklund, Minna Taipale, Thomas Helleday, Jussi Taipale
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0084955
Clustering Gene Expression Regulators: New Approach to Disease Subtyping
Cited by: 30
Author(s): Mikhail A. Pyatnitskiy, Ilya Mazo, Maria Shkrob, Elena Schwartz, Ekaterina Kotelnikova
Software Mentions: 4
Published: almost 11 years ago
10.1186/1471-2202-8-59
Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach
Cited by: 10
Author(s): Tiago R. Magalhães, Jessica Palmer, Pavel Tomančák, Katherine S. Pollard
Software Mentions: 3
Published: over 17 years ago
10.1186/gb-2009-10-3-r31
Integrated analysis of breast cancer cell lines reveals unique signaling pathways
Cited by: 58
Author(s): Laura M. Heiser, Nicholas J. Wang, Carolyn Talcott, Keith R. Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara Weber, Sylvie Laquerre, Jeffrey R. Jackson, Richard Wooster, Wen Lin Kuo, Joe W. Gray, Paul T. Spellman
Software Mentions: 2
Published: almost 16 years ago
10.1038/s41598-019-55146-2
An Optimised Protocol Harnessing Laser Capture Microdissection for Transcriptomic Analysis on Matched Primary and Metastatic Colorectal Tumours
Cited by: 7
Author(s): Chin-Ann Johnny Ong, Qiu Xuan Tan, Hui Jun Lim, Nicholas B. Shannon, Weng Khong Lim, Josephine Hendrikson, Wai Har Ng, Joey Wee-Shan Tan, Kelvin K.N. Koh, Seettha D. Wasudevan, Cedric Chuan‐Young Ng, Vikneswari Rajasegaran, Tony Kiat Hon Lim, Choon Kiat Ong, Oi Lian Kon, Bin Tean Teh, Grace Hwei Ching Tan, Claramae Shulyn Chia, Khee Chee Soo, Marissa Teo
Software Mentions: 2
Published: almost 5 years ago