Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: hopach
https://packages.ecosyste.ms/registries/bioconductor.org/packages/hopach
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
1 version
Latest release: 10 months ago
5 dependent packages
59,687 downloads total
Papers Mentioning hopach 7
10.1371/journal.pone.0091828
Characterization of Changes in Gene Expression and Biochemical Pathways at Low Levels of Benzene ExposureCited by: 36
Author(s): Reuben Thomas, Alan Hubbard, Cliona M. McHale, Luoping Zhang, Stephen M. Rappaport, Qing Lan, Nathaniel Rothman, Roel Vermeulen, Kathryn Z. Guyton, Jennifer Jinot, Babasaheb Sonawane, Martyn T. Smith
Software Mentions: 5
Published: about 10 years ago
10.3390/ijerph9072479
Using Bioinformatic Approaches to Identify Pathways Targeted by Human LeukemogensCited by: 6
Author(s): Reuben Thomas, Jimmy Phuong, Cliona M. McHale, Luoping Zhang
Software Mentions: 5
Published: about 12 years ago
10.1080/15384101.2016.1261765
Genome-wide screen of cell-cycle regulators in normal and tumor cells identifies a differential response to nucleosome depletionCited by: 24
Author(s): Maria Sokolova, Mikko Turunen, Oliver Mortusewicz, Teemu Kivioja, Patrick Herr, Anna Vähärautio, Mikael Björklund, Minna Taipale, Thomas Helleday, Jussi Taipale
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0084955
Clustering Gene Expression Regulators: New Approach to Disease SubtypingCited by: 30
Author(s): Mikhail A. Pyatnitskiy, Ilya Mazo, Maria Shkrob, Elena Schwartz, Ekaterina Kotelnikova
Software Mentions: 4
Published: over 10 years ago
10.1186/1471-2202-8-59
Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approachCited by: 10
Author(s): Tiago R. Magalhães, Jessica Palmer, Pavel Tomančák, Katherine S. Pollard
Software Mentions: 3
Published: almost 17 years ago
10.1186/gb-2009-10-3-r31
Integrated analysis of breast cancer cell lines reveals unique signaling pathwaysCited by: 58
Author(s): Laura M. Heiser, Nicholas J. Wang, Carolyn Talcott, Keith R. Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara Weber, Sylvie Laquerre, Jeffrey R. Jackson, Richard Wooster, Wen Lin Kuo, Joe W. Gray, Paul T. Spellman
Software Mentions: 2
Published: over 15 years ago
10.1038/s41598-019-55146-2
An Optimised Protocol Harnessing Laser Capture Microdissection for Transcriptomic Analysis on Matched Primary and Metastatic Colorectal TumoursCited by: 7
Author(s): Chin-Ann Johnny Ong, Qiu Xuan Tan, Hui Jun Lim, Nicholas B. Shannon, Weng Khong Lim, Josephine Hendrikson, Wai Har Ng, Joey Wee-Shan Tan, Kelvin K.N. Koh, Seettha D. Wasudevan, Cedric Chuan‐Young Ng, Vikneswari Rajasegaran, Tony Kiat Hon Lim, Choon Kiat Ong, Oi Lian Kon, Bin Tean Teh, Grace Hwei Ching Tan, Claramae Shulyn Chia, Khee Chee Soo, Marissa Teo
Software Mentions: 2
Published: over 4 years ago