Projects: bioconductor: groHMM
https://packages.ecosyste.ms/registries/bioconductor.org/packages/groHMM
GRO-seq Analysis Pipeline
1 version
Latest release: over 2 years ago
16,937 downloads total
Enhanced Analysis
Educational Contributors:
anusha.nagari@utsouthwestern.edu
venkat.malladi@utsouthwestern.edu
Repository Activity:
Repository Owner:
Kraus Lab @ UT Southwestern (organization)
We study basic mechanisms of nuclear signaling and gene regulation human physiology and disease states. Academic
We study basic mechanisms of nuclear signaling and gene regulation human physiology and disease states. Academic
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+16
Academic maintainer emails
2 maintainers with academic email addresses -
+40
Educational commit emails
2 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website
Very Likely Science (100)
Papers Mentioning groHMM 6
10.1186/s12864-018-5016-z
Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulationCited by: 49
Author(s): Jing Wang, Yue Zhao, Xiaofan Zhou, Scott W. Hiebert, Qi Liu, Yu Shyr
Software Mentions: 4
Published: almost 8 years ago
10.1186/1471-2164-15-155
Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analysesCited by: 36
Author(s): Xin Luo, Minho Chae, Raga Krishnakumar, Charles G. Danko, W. Lee Kraus
Software Mentions: 4
Published: over 12 years ago
10.1186/s13072-020-00341-z
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modificationsCited by: 1
Author(s): Anshupa Sahu, Na Li, Ilona Dunkel, Ho‐Ryun Chung
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2020.595550
An Enhancer-Based Analysis Revealed a New Function of Androgen Receptor in Tumor Cell Immune EvasionCited by: 3
Author(s): Yuan Wang, Jiajia Li, Jingjing Li, Peipei Li, Li Wang, Lijun Di
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-015-0656-3
groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing dataCited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: almost 11 years ago
10.1093/bioinformatics/btaa011
Defining data-driven primary transcript annotations with <i>primaryTranscriptAnnotation</i> in RCited by: 11
Author(s): W. T. Anderson, Fabiana M. Duarte, Mete Civelek, Michael J. Guertin
Software Mentions: 1
Published: over 6 years ago