Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: groHMM
https://packages.ecosyste.ms/registries/bioconductor.org/packages/groHMM
GRO-seq Analysis Pipeline
1 version
Latest release: 12 months ago
16,937 downloads total
Papers Mentioning groHMM 6
10.1186/s12864-018-5016-z
Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulationCited by: 49
Author(s): Jing Wang, Yue Zhao, Xiaofan Zhou, Scott W. Hiebert, Qi Liu, Yu Shyr
Software Mentions: 4
Published: about 6 years ago
10.1186/1471-2164-15-155
Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analysesCited by: 36
Author(s): Xin Luo, Minho Chae, Raga Krishnakumar, Charles G. Danko, W. Lee Kraus
Software Mentions: 4
Published: over 10 years ago
10.1186/s13072-020-00341-z
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modificationsCited by: 1
Author(s): Anshupa Sahu, Na Li, Ilona Dunkel, Ho‐Ryun Chung
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2020.595550
An Enhancer-Based Analysis Revealed a New Function of Androgen Receptor in Tumor Cell Immune EvasionCited by: 3
Author(s): Yuan Wang, Jiajia Li, Jingjing Li, Peipei Li, Li Wang, Lijun Di
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12859-015-0656-3
groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing dataCited by: 56
Author(s): Minho Chae, Charles G. Danko, W. Lee Kraus
Software Mentions: 2
Published: about 9 years ago
10.1093/bioinformatics/btaa011
Defining data-driven primary transcript annotations with <i>primaryTranscriptAnnotation</i> in RCited by: 11
Author(s): W. T. Anderson, Fabiana M. Duarte, Mete Civelek, Michael J. Guertin
Software Mentions: 1
Published: over 4 years ago