Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: flowStats
https://packages.ecosyste.ms/registries/bioconductor.org/packages/flowStats
Statistical methods for the analysis of flow cytometry data
1 version
Latest release: 10 months ago
9 dependent packages
172,079 downloads total
Papers Mentioning flowStats 19
10.7554/eLife.65372
Image3C, a multimodal image-based and label-independent integrative method for single-cell analysisCited by: 6
Author(s): Alice Accorsi, Andrew Box, Robert Peuß, Christopher J. Wood, Alejandro Sánchez Alvarado, Nicolas Rohner
Software Mentions: 11
Published: about 3 years ago
10.3389/fonc.2016.00188
Immunophenotype Discovery, Hierarchical Organization, and Template-Based Classification of Flow Cytometry SamplesCited by: 12
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 10
Published: almost 8 years ago
10.3390/vaccines8010138
From Bivariate to Multivariate Analysis of Cytometric Data: Overview of Computational Methods and Their Application in Vaccination StudiesCited by: 12
Author(s): Simone Lucchesi, Simone Furini, Donata Medaglini, Annalisa Ciabattini
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pcbi.1003806
OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data AnalysisCited by: 171
Author(s): Greg Finak, Jacob Frelinger, Wenxin Jiang, Evan W. Newell, John Ramey, Mark M. Davis, Spyros A. Kalams, Stephen C. De Rosa, Raphaël Gottardo
Software Mentions: 8
Published: almost 10 years ago
10.1186/1471-2105-13-252
QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry dataCited by: 17
Author(s): Greg Finak, Wenxin Jiang, Jorge Pardo, Adam Asare, Raphaël Gottardo
Software Mentions: 8
Published: almost 12 years ago
10.1038/s41598-020-70198-5
Computational flow cytometry of planktonic populations for the evaluation of microbiological-control programs in district cooling plantsCited by: 0
Author(s): James McElhinney, Aurélie Mawart, Ruba Alkaabi, H. S. S. Abdelsamad, Afnan Mansour, Ayesha Hasan
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-020-64516-0
Cyto-Feature Engineering: A Pipeline for Flow Cytometry Analysis to Uncover Immune Populations and Associations with DiseaseCited by: 7
Author(s): Amy Fox, Taru Dutt, Burton Karger, Mauricio Rojas, Andrés Obregón-Henao, G. Brooke Anderson, Marcela Henao-Tamayo
Software Mentions: 6
Published: about 4 years ago
10.1186/s12859-016-1083-9
flowVS: channel-specific variance stabilization in flow cytometryCited by: 15
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 6
Published: about 8 years ago
10.1186/1471-2105-10-106
flowCore: a Bioconductor package for high throughput flow cytometryCited by: 421
Author(s): Florian Hahne, Nolwenn Le Meur, Ryan R. Brinkman, Byron Ellis, Perry D. Haaland, Deepayan Sarkar, Josef Špidlen, Errol Strain, Robert Gentleman
Software Mentions: 5
Published: over 15 years ago
10.3389/fimmu.2016.00603
TGF-β Affects the Differentiation of Human GM-CSF+ CD4+ T Cells in an Activation- and Sodium-Dependent MannerCited by: 5
Author(s): Szabolcs Éliás, Angelika Schmidt, Venkateshan Kannan, John Andersson, Jesper Tegnér
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pgen.1008686
Quantitative genetic analysis deciphers the impact of cis and trans regulation on cell-to-cell variability in protein expression levelsCited by: 6
Author(s): Michael D. Morgan, Étienne Patin, Bernd Jabla, Milena Hasan, Lluís Quintana‐Murci, John C. Marioni
Software Mentions: 4
Published: over 4 years ago
10.1155/2009/809469
Bridging the Divide between Manual Gating and Bioinformatics with the Bioconductor Package flowFlowJoCited by: 4
Author(s): John J. Gosink, Gary Means, William Rees, Cheng Su, Hugh Rand
Software Mentions: 4
Published: almost 15 years ago
10.1038/s42003-020-1075-1
Cell-to-cell expression dispersion of B-cell surface proteins is linked to genetic variants in humansCited by: 2
Author(s): Gérard Triqueneaux, Claire Burny, Orsolya Symmons, Stéphane Janczarski, Henri Gruffat, Gaël Yvert
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-020-75417-7
Genetic parameters and associated genomic regions for global immunocompetence and other health-related traits in pigsCited by: 19
Author(s): María Ballester, Yuliaxis Ramayo-Caldas, Olga González‐Rodríguez, M. Pascual, Josep Peñuelas i Reixach, Marta Díaz, Fany Blanc, Sergi López-Serrano, J. Tibau, Raquel Quintanilla
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0197902
DNA immunization site determines the level of gene expression and the magnitude, but not the type of the induced immune responseCited by: 16
Author(s): Stefan Petkov, Elizaveta Starodubova, Anastasia Latanova, Athina Kilpeläinen, Oleg Latyshev, Šimons Svirskis, Britta Wahrén, Francesca Chiodi, Ilya Gordeychuk, Maria Isaguliants
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-018-26281-z
Codon optimization and improved delivery/immunization regimen enhance the immune response against wild-type and drug-resistant HIV-1 reverse transcriptase, preserving its Th2-polarityCited by: 19
Author(s): Anastasia Latanova, Stefan Petkov, Athina Kilpeläinen, Juris Jansons, Oleg Latyshev, Yulia Kuzmenko, Jorma Hinkula, Maxim Abakumov, Vladimir T. Valuev-Elliston, Mark Gomelsky, В.Л. Карпов, Francesca Chiodi, Britta Wahrén, Denis Y. Logunov, Elizaveta Starodubova, Maria Isaguliants
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-021-84765-x
Ex vivo characterization of Breg cells in patients with chronic Chagas diseaseCited by: 2
Author(s): Magali Girard, Gonzalo Raúl Acevedo, Micaela Soledad Ossowski, Marisa Fernández, Yolanda Hernández, Raúl Chadi, Karina Andrea Gómez
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-019-56279-0
Rheumatoid arthritis patients display B-cell dysregulation already in the naïve repertoire consistent with defects in B-cell toleranceCited by: 35
Author(s): Yan Wang, Katy A. Lloyd, Ioannis N. Melas, Diana Zhou, Radha Thyagarajan, Joakim Lindqvist, Monika Hansson, Anna Svärd, Linda Mathsson‐Alm, Alf Kastbom, Karin Lundberg, Lars Klareskog, Anca I. Catrina, Stephen Rapecki, Vivianne Malmström, Caroline Grönwall
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-017-07851-z
Luciferase Expression Allows Bioluminescence Imaging But Imposes Limitations on the Orthotopic Mouse (4T1) Model of Breast CancerCited by: 86
Author(s): V. P. Baklaushev, Athina Kilpeläinen, Stefan Petkov, Maxim A. Abakumov, N. F. Grinenko, Gaukhar M. Yusubalieva, Anastasia Latanova, Ilya Gubskiy, Ф Г Забозлаев, Elizaveta Starodubova, Tatiana O. Abakumova, Maria Isaguliants, V. P. Chekhonin
Software Mentions: 2
Published: almost 7 years ago