bioconductor: enrichplot | Projects

10.3389/fgene.2020.00396

Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary Syndrome
Cited by: 34
Author(s): Lingbin Qi, Boxuan Liu, Xian Chen, Qiwei Liu, Wanqiong Li, Bo Lv, Xiaoyu Xu, Lu Wang, Qiao Zeng, Jinfeng Xue, Zhigang Xue
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.103949

Analysis of DNA methylation-driven genes for predicting the prognosis of patients with colorectal cancer
Cited by: 3
Author(s): Boshi Fu, Du Cheng, Zhuona Wu, Mingwei Li, Yi Zhao, Xinli Liu, Huizhe Wu, Minjie Wei
Software Mentions: 7
Published: about 4 years ago

10.3389/fcell.2021.648279

Prognostic Value of a Novel Signature With Nine Hepatitis C Virus-Induced Genes in Hepatic Cancer by Mining GEO and TCGA Databases
Cited by: 5
Author(s): Jianming Wei, Bo Wang, Xibo Gao, Daqing Sun
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: about 3 years ago

10.3389/fonc.2021.618187

CCR4, CCR8, and P2RY14 as Prognostic Factors in Head and Neck Squamous Cell Carcinoma Are Involved in the Remodeling of the Tumor Microenvironment
Cited by: 9
Author(s): Liangliang Meng, Xiaoxi He, Hong Qin, Bo Qiao, Xiao Zhang, Bin Wu, Xiaobo Zhang, Yingtian Wei, Jing Li, Zhaoxiang Ye, Yueyong Xiao
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2020.580263

A Prognostic Microenvironment-Related Immune Signature via ESTIMATE (PROMISE Model) Predicts Overall Survival of Patients With Glioma
Cited by: 23
Author(s): Huaide Qiu, Yongqiang Li, Shupeng Cheng, Jiahui Li, Chuan He, Jianan Li
Software Mentions: 7
Published: almost 4 years ago

10.1080/21655979.2020.1840731

Bioinformatics analysis to screen key prognostic genes in the breast cancer tumor microenvironment
Cited by: 9
Author(s): Qian Ye, Xiaofei Han, Zhengsheng Wu
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.202603

Functional analysis of brain derived neurotrophic factor (BDNF) in Huntington’s disease
Cited by: 6
Author(s): Zhike Zhou, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: over 3 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.103994

Molecular identification of protein kinase C beta in Alzheimer's disease
Cited by: 6
Author(s): Zhike Zhou, Fenqin Chen, Shanshan Zhong, Yi Zhou, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Mei Zhao, Chuansheng Zhao
Software Mentions: 6
Published: about 4 years ago

10.18632/aging.103832

Prognostic model of patients with liver cancer based on tumor stem cell content and immune process
Cited by: 7
Author(s): Jie Zhu, Miaomiao Gao, Yuchen Jin, Weiran Huang, Zhuo Huang, Zhengwei Xie
Software Mentions: 6
Published: about 4 years ago

10.5713/ajas.20.0342

Integrated analysis of transcriptomic and proteomic analyses reveals different metabolic patterns in the livers of Tibetan and Yorkshire pigs
Cited by: 5
Author(s): Mengqi Duan, Zhenmei Wang, Xijie Guo, Kejun Wang, Siyuan Liu, Bo Zhang, Peng Shang
Software Mentions: 6
Published: over 3 years ago

10.1080/07853890.2021.1914343

Bioinformatics reveal macrophages marker genes signature in breast cancer to predict prognosis
Cited by: 21
Author(s): Ying Li, Xin Zhao, Qiang Liu, Yujie Liu
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12915-021-01034-z

Single-cell transcriptomics reveals the effect of PD-L1/TGF-β blockade on the tumor microenvironment
Cited by: 14
Author(s): Yoong Wearn Lim, Garry L. Coles, Savreet K. Sandhu, D. S. Johnson, Adam S. Adler, Erica L. Stone
Software Mentions: 6
Published: over 3 years ago

10.1186/s12885-021-08083-1

Gene expression and immune infiltration in melanoma patients with different mutation burden
Cited by: 8
Author(s): Liwei Wang, Chuanxi Fu, Rui Li, Lei Shi, Guosheng Zhao, Yan Zhang
Software Mentions: 6
Published: over 3 years ago

10.1080/21655979.2020.1847398

Development of cancer prognostic signature based on pan-cancer proteomics
Cited by: 6
Author(s): Weiguo Huang, Jianhui Chen, Wanqing Weng, Yukai Xiang, Hongqi Shi, Yunfeng Shan
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40364-021-00292-x

The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinoma
Cited by: 13
Author(s): Chi T. Viet, Gary Yu, Kesava Asam, Carissa M. Thomas, Angela J. Yoon, Yan Chen Wongworawat, Mina Haghighiabyaneh, Courtney A. Kilkuts, Caitlyn M. McGue, Marcus Couey, Nicholas Callahan, Coleen Doan, Paul C. Walker, Khanh K. Nguyen, Stephanie C. Kidd, Steve C. Lee, Anupama Grandhi, Allen Cheng, Ashish Patel, Elizabeth Philipone, Olivia L. Ricks, Clint Allen, Bradley E. Aouizerat
Software Mentions: 6
Published: over 3 years ago

10.1155/2020/8896511

Predicting the Clinical Outcome of Lung Adenocarcinoma Using a Novel Gene Pair Signature Related to RNA-Binding Protein
Cited by: 3
Author(s): Liangliang Meng, Xiaoxi He, Zhang Xiao, Xiaobo Zhang, Yingtian Wei, Bin Wu, Jing Li, Yueyong Xiao
Software Mentions: 6
Published: about 4 years ago

10.1186/s12935-021-02049-w

Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinoma
Cited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: over 3 years ago

10.1038/s41419-021-03680-1

Tumor-derived exosomal circPSMA1 facilitates the tumorigenesis, metastasis, and migration in triple-negative breast cancer (TNBC) through miR-637/Akt1/β-catenin (cyclin D1) axis
Cited by: 56
Author(s): Su-Jin Yang, Dandan Wang, Shanliang Zhong, Wenquan Chen, Wang Fengliang, Jian Zhang, Wen‐Xiu Xu, Di Xu, Qian Zhang, Jian Li, Heda Zhang, Jianglong Hou, Ling Mao, Jinhai Tang
Software Mentions: 6
Published: over 3 years ago

10.1038/s41420-021-00547-4

Impairment of neuronal mitochondrial function by l-DOPA in the absence of oxygen-dependent auto-oxidation and oxidative cell damage
Cited by: 5
Author(s): Philipp Hörmann, Sylvie Delcambre, Jasmin E. Hanke, Robert Geffers, Marcel Leist, Karsten Hiller
Software Mentions: 6
Published: over 3 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 4 years ago

10.1155/2020/8841859

Establishment and Validation of a Prognostic Risk Model for Autophagy-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Wenkai Han, Xiaoyan Xu, Kai Che, Guofeng Ma, Danxia Li, Mingxin Zhang, Wei Jiao, Haitao Niu
Software Mentions: 6
Published: about 4 years ago

10.1155/2021/6680883

MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
Cited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: over 3 years ago

10.15252/emmm.202013412

The immune suppressive microenvironment affects efficacy of radio‐immunotherapy in brain metastasis
Cited by: 23
Author(s): Katja Niesel, Marcel H. Schulz, Julian Anthes, Tijna Alekseeva, Jadranka Macas, Anna Salamero-Boix, Aylin Möckl, T. Oberwahrenbrock, Marco Lolies, Stefan Stein, Karl H. Plate, Yvonne Reiss, Franz Rödel, Lisa Sevenich
Software Mentions: 6
Published: over 3 years ago

10.1155/2020/8468303

Investigation of the Potential Mechanism Governing the Effect of the Shen Zhu San on COVID-19 by Network Pharmacology
Cited by: 5
Author(s): Yuxuan Wang, Yuhua Ru, Guowei Zhuo, Maozheng Sheng, Shuangqiu Wang, Jiarui Ma, Guowei Zhou, Xiaohe Sun, Yanqi Zeng, Ya Zhang, Hui Li, Zhigang Lu, Depei Wu, Minghua Wu
Software Mentions: 6
Published: about 4 years ago

10.3389/fcvm.2021.696321

Bioinformatics and Immune Infiltration Analyses Reveal the Key Pathway and Immune Cells in the Pathogenesis of Hypertrophic Cardiomyopathy
Cited by: 11
Author(s): Xuzhe Zhang, Si Zhang, Tingting Tang, Xiang Cheng
Software Mentions: 6
Published: about 3 years ago

10.3389/fgene.2021.739975

Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma
Cited by: 7
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 6
Published: about 3 years ago

10.3389/fgene.2021.612011

TGFβ1: An Indicator for Tumor Immune Microenvironment of Colon Cancer From a Comprehensive Analysis of TCGA
Cited by: 3
Author(s): Jinyan Wang, Jinqiu Wang, Quan Gu, Yan Yang, Yajun Ma, Quan’an Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.625236

Identification of Prognostic Stromal-Immune Score–Based Genes in Hepatocellular Carcinoma Microenvironment
Cited by: 4
Author(s): Shanshan Liu, Guangchuang Yu, Li Liu, Xiaobao Zou, Lang Zhou, Erqiang Hu, Yang Song
Software Mentions: 6
Published: almost 4 years ago

10.3389/fimmu.2021.726747

Identifying Immune Cell Infiltration and Effective Diagnostic Biomarkers in Rheumatoid Arthritis by Bioinformatics Analysis
Cited by: 45
Author(s): Sheng Zhou, Hongmei Lü, Min Xiong
Software Mentions: 6
Published: over 3 years ago

10.3389/fmolb.2020.582911

Comprehensive Analysis of the Relationships Between Tumor Mutation Burden With Immune Infiltrates in Cervical Cell Carcinoma
Cited by: 9
Author(s): Cankun Zhou, Chaomei Li, Shunqing Peng, Liangcheng Zhou, Huan Li
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.650534

High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.00424

BTK Has Potential to Be a Prognostic Factor for Lung Adenocarcinoma and an Indicator for Tumor Microenvironment Remodeling: A Study Based on TCGA Data Mining
Cited by: 82
Author(s): Kewei Bi, Xin Wei, Xiaoxue Qin, Bo Li
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.685026

A Novel Prognostic Signature Based on Metabolism-Related Genes to Predict Survival and Guide Personalized Treatment for Head and Neck Squamous Carcinoma
Cited by: 8
Author(s): Ying Liu, Youliang Weng, Yijie Pan, Ze‐Ning Huang, Xiaochuan Chen, Wenquan Hong, Ting Lin, Lihua Wang, Wei Liu, Sufang Qiu
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.637023

CXCL5 Has Potential to Be a Marker for Hepatocellular Carcinoma Prognosis and Was Correlating With Immune Infiltrates
Cited by: 8
Author(s): Yuan Nie, Mei-chun Jiang, Cong Liu, Qi Liu, Xuan Zhu
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.595099

A Correlation Study of Prognostic Risk Prediction for Colorectal Cancer Based on Autophagy Signature Genes
Cited by: 7
Author(s): Haibi Zhao, Chengzhi Huang, Yuqi Luo, Xiaoya Yao, Yong Hu, Muqing Wang, Xin Chen, Jun Zeng, Weixian Hu, Junjiang Wang, Rongjiang Li, Xueqing Yao
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2019.01509

Screening the Cancer Genome Atlas Database for Genes of Prognostic Value in Acute Myeloid Leukemia
Cited by: 16
Author(s): Jie Ni, Yang Wu, Feng Qi, Xiao Li, Shengwen Yu, Siwen Liu, Jifeng Feng, Yuxiao Zheng
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-75688-0

Analysis of open chromatin regions in bladder cancer links β-catenin mutations and Wnt signaling with neuronal subtype of bladder cancer
Cited by: 3
Author(s): Aleyna Eray, Perihan Yağmur Güneri, Gülden Özden Yılmaz, Gökhan Karakülah, Serap Erkek
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-020-79736-7

BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-021-98059-9

Sex-dependent gene co-expression in the human body
Cited by: 9
Author(s): Robin Hartman, Michal Mokrý, Gérard Pasterkamp, Hester M. den Ruijter
Software Mentions: 6
Published: about 3 years ago

10.7150/thno.47627

Multi-omics study of silicosis reveals the potential therapeutic targets PGD2 and TXA2
Cited by: 25
Author(s): Junling Pang, Xianmei Qi, Yunbo Luo, Xiaona Li, Ting Shu, Baicun Li, Meiyue Song, Ying Liu, Wei Dong, Jingyu Chen, Jing Wang, Chen Wang
Software Mentions: 6
Published: almost 4 years ago

10.1128/mSystems.00163-21

Oral Epithelial Cells Distinguish between Candida Species with High or Low Pathogenic Potential through MicroRNA Regulation
Cited by: 5
Author(s): Márton Horváth, Gábor Nagy, Nóra Zsindely, László Bodai, Péter Horváth, Csaba Vágvölgyi, Joshua D. Nosanchuk, Renáta Tóth, Attila Gácser
Software Mentions: 6
Published: over 3 years ago

10.1186/s13046-021-02015-4

LncRNA CARMN overexpression promotes prognosis and chemosensitivity of triple negative breast cancer via acting as miR143-3p host gene and inhibiting DNA replication
Cited by: 15
Author(s): Xiaonan Sheng, Huijuan Dai, Yueyao Du, Jing Peng, Rui Sha, Fan Yang, Liheng Zhou, Yingsong Lin, Shuguang Xu, Yifan Wu, Weiqiang Yin, Jinsong Lu
Software Mentions: 6
Published: over 3 years ago

10.1186/s13048-020-00730-8

Identification of an autophagy-related gene signature for survival prediction in patients with cervical cancer
Cited by: 18
Author(s): Hengyu Chen, Qingchun Deng, Wenwen Wang, Huishan Tao, Ying Gao
Software Mentions: 6
Published: about 4 years ago

10.1155/2021/5552623

Integrative Functional Genomic Analysis of Molecular Signatures and Mechanistic Pathways in the Cell Cycle Underlying Alzheimer’s Disease
Cited by: 5
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-021-84190-0

Development of a poor-prognostic-mutations derived immune prognostic model for acute myeloid leukemia
Cited by: 7
Author(s): Feng‐Ting Dao, Jun Wang, Lu Yang, Ya‐Zhen Qin
Software Mentions: 5
Published: over 3 years ago

10.1155/2021/7391560

The Effect of Ferroptosis-Related Genes on Prognosis and Tumor Mutational Burden in Hepatocellular Carcinoma
Cited by: 8
Author(s): Hao Zhang, Renzheng Liu, Lin Sun, Weidong Guo, Xiao Hu
Software Mentions: 5
Published: over 3 years ago

10.1155/2021/6633442

The Construction and Comprehensive Analysis of Inflammation-Related ceRNA Networks and Tissue-Infiltrating Immune Cells in Ulcerative Colitis Progression
Cited by: 8
Author(s): Jiawei Lu, Aimaier Rouzigu, Li-Hong Teng, Weili Liu
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.01088

MMP25 Regulates Immune Infiltration Level and Survival Outcome in Head and Neck Cancer Patients
Cited by: 8
Author(s): Yujie Liang, Chenyu Guan, Kan Li, Guanghui Zheng, Tao Wang, Sien Zhang, Guiqing Liao
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2020.554214

Screening and Identification of Prognostic Tumor-Infiltrating Immune Cells and Genes of Endometrioid Endometrial Adenocarcinoma: Based on The Cancer Genome Atlas Database and Bioinformatics
Cited by: 9
Author(s): Bingnan Chen, Di Wang, Jiapo Li, Yue Hou, Chong Qiao
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2021.637911

Phenotypic Plasticity Conferred by the Metastatic Microenvironment of the Brain Strengthens the Intracranial Tumorigenicity of Lung Tumor Cells
Cited by: 0
Author(s): Xin Wei, Kewei Bi, Bo Li
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.605097

An Integrative Pan-Cancer Analysis Revealing LCN2 as an Oncogenic Immune Protein in Tumor Microenvironment
Cited by: 33
Author(s): Wen‐Xiu Xu, Jian Zhang, Yu-Ting Hua, Su-Jin Yang, Dandan Wang, Jinhai Tang
Software Mentions: 5
Published: almost 4 years ago

10.1002/2211-5463.13085

IGLL5 is correlated with tumor‐infiltrating immune cells in clear cell renal cell carcinoma
Cited by: 11
Author(s): Zian Xia, Xingyuan Wang, Licheng Cai, Wengang Jian, Cheng Zhang
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12885-021-08390-7

Identification of prognostic markers for hepatocellular carcinoma based on the epithelial-mesenchymal transition-related gene BIRC5
Cited by: 13
Author(s): Rongzhong Xu, Lin Lei, Bo Zhang, Jian Wang, Fanchen Zhao, Xiaolin Liu, Yiping Li, Yan Li
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.633607

Development and Validation of a Hypoxia-Associated Prognostic Signature Related to Osteosarcoma Metastasis and Immune Infiltration
Cited by: 35
Author(s): Yucheng Fu, Qiyuan Bao, Zhuochao Liu, Guoyu He, Junxiang Wen, Qi Liu, Yanguang Xu, Zhijian Jin, Weibin Zhang
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2020.616998

Application of an Autophagy-Related Gene Prognostic Risk Model Based on TCGA Database in Cervical Cancer
Cited by: 16
Author(s): Huadi Shi, Fulan Zhong, Xiaoqiong Yi, Zhenyi Shi, Feiyan Ou, Zhonghua Xu, Yufang Zuo
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcell.2021.730240

Multi-Omics Analysis of the Anti-tumor Synergistic Mechanism and Potential Application of Immune Checkpoint Blockade Combined With Lenvatinib
Cited by: 4
Author(s): Yuting Lu, Juebin Jin, Qian Du, Min Hu, Yuhan Wei, Miao Wang, Hongzhong Li, Li Qin
Software Mentions: 5
Published: about 3 years ago

10.1186/s13578-020-00517-w

Identification of predictors based on drug targets highlights accurate treatment of goserelin in breast and prostate cancer
Cited by: 6
Author(s): Yue Zhao, Huimin Sun, Jianzhong Zheng, Chen Shao, Dongwei Zhang
Software Mentions: 5
Published: almost 4 years ago

10.18632/aging.203121

Identification of microenvironment related potential biomarkers of biochemical recurrence at 3 years after prostatectomy in prostate adenocarcinoma
Cited by: 9
Author(s): Xiaoru Sun, Lu Wang, Hongkai Li, Chuandi Jin, Yuanyuan Yu, Lei Hou, Xinhui Liu, Yifan Yu, Ran Yan, Fuzhong Xue
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.203081

Pan-cancer analysis of the prognostic value of C12orf75 based on data mining
Cited by: 3
Author(s): Guangzhen Cai, Guan-Nan Jin, Jintai Liang, Ganxun Li, Xiaoping Chen, Huifang Liang, Zhao Ding
Software Mentions: 5
Published: over 3 years ago

10.1155/2019/2506843

Deciphering Immune-Associated Genes to Predict Survival in Clear Cell Renal Cell Cancer
Cited by: 30
Author(s): Daixing Hu, Mi Zhou, Xin Zhu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0252508

Network pharmacology and molecular docking study on the mechanism of colorectal cancer treatment using Xiao-Chai-Hu-Tang
Cited by: 23
Author(s): Jingyun Jin, Bin Chen, Xiangyang Zhan, Zhiyi Zhou, Hui Liu, Yun Dong
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/5217405

Based on Network Pharmacology to Explore the Molecular Targets and Mechanisms of Gegen Qinlian Decoction for the Treatment of Ulcerative Colitis
Cited by: 43
Author(s): Meiqi Wei, He Li, Qifang Li, Yi Qiao, Qun Ma, Ruining Xie, Rong Wang, Yuan Liu, Chao Wei, Bingbing Li, Canlei Zheng, Bing Sun, Bin Yu
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2021.705939

Identification of the Effects of Chondroitin Sulfate on Inhibiting CDKs in Colorectal Cancer Based on Bioinformatic Analysis and Experimental Validation
Cited by: 1
Author(s): Yingyu Zhou, Xuyang Li, Yuki Morita, Satoshi Hachimura, Takuya Miyakawa, Sachiko Takahashi, Masaru Tanokura
Software Mentions: 5
Published: about 3 years ago

10.3389/fimmu.2021.670309

Comparative Immunogenomics of Canine Natural Killer Cells as Immunotherapy Target
Cited by: 7
Author(s): Alicia A. Gingrich, Taylor Reiter, Sean J Judge, Daniel York, Mio Yanagisawa, Aryana Razmara, Ian R. Sturgill, Ugur Nur Basmaci, Rachel Brady, Kevin Stoffel, William J. Murphy, Robert B. Rebhun, C. Titus Brown, Robert J. Canter
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2021.621430

Identification of Hub Genes Associated With Melanoma Development by Comprehensive Bioinformatics Analysis
Cited by: 8
Author(s): Jie Jiang, Chong Liu, Guoyong Xu, Tuo Liang, Chaojie Yu, Shijie Liao, Zide Zhang, Zhaojun Lu, Zequn Wang, Jiarui Chen, Tianyou Chen, Hao Li, Xinli Zhan
Software Mentions: 5
Published: over 3 years ago

10.3389/fmolb.2021.670666

Identification of a Gene Set Correlated With Immune Status in Ovarian Cancer by Transcriptome-Wide Data Mining
Cited by: 8
Author(s): Lili Fan, Lei Han, Yu Lin, Zhengwei Zhou, Guang Shu, Zhipeng Yan, Haotian Chen, Tianxiang Zhang, Gang Yin
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-84270-1

Serial transplantation unmasks galectin-9 contribution to tumor immune escape in the MB49 murine model
Cited by: 4
Author(s): Valentin Baloche, Julie Rivière, Thi Bao Tram Tran, Aurore Gelin, Olivia Bawa, Nicolas Signolle, Mouhamadou Diop, Philippe Dessen, Stéphanie Beq, Muriel D. David, P. Busson
Software Mentions: 5
Published: over 3 years ago

10.1002/2211-5463.12982

Metabolomic analysis of fibrotic mice combined with public RNA‐Seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis
Cited by: 8
Author(s): Yosui Nojima, Yoshito Takeda, Yohei Maeda, Takeshi Bamba, Eiichiro Fukusaki, Mari Itoh, Kenji Mizuguchi, Atsushi Kumanogoh
Software Mentions: 4
Published: about 4 years ago

10.3389/fimmu.2021.716606

Augmented Expansion of Treg Cells From Healthy and Autoimmune Subjects via Adult Progenitor Cell Co-Culture
Cited by: 5
Author(s): James L. Reading, Valerie D. Roobrouck, Caroline Hull, Pablo D. Becker, Jelle Beyens, Alice Valentin-Torres, Dominic A. Boardman, Estefania Nova Lamperti, Samantha R. Stubblefield, Giovanna Lombardi, Robert Deans, Anthony E. Ting, Timothy Tree
Software Mentions: 4
Published: about 3 years ago

10.1186/s13148-021-01090-w

Identification of prognosis-related molecular subgroups based on DNA methylation in pancreatic cancer
Cited by: 6
Author(s): Xiaoli Yin, Lingming Kong, Peng Liu
Software Mentions: 4
Published: over 3 years ago

10.3389/fmolb.2021.583028

CCR7 Has Potential to Be a Prognosis Marker for Cervical Squamous Cell Carcinoma and an Index for Tumor Microenvironment Change
Cited by: 4
Author(s): Weijie Tian, Penghui Feng, Jun Wang, Ting Yan, Qing-Feng Qin, Donglin Li, Wei Liang
Software Mentions: 4
Published: over 3 years ago

10.1186/s12891-021-04109-8

Major ceRNA regulation and key metabolic signature analysis of intervertebral disc degeneration
Cited by: 7
Author(s): Shuai Cao, Jie Li, Kai Yang, Haopeng Li
Software Mentions: 4
Published: over 3 years ago

10.3390/cells9092047

Rebuilding Tendons: A Concise Review on the Potential of Dermal Fibroblasts
Cited by: 10
Author(s): Jin Chu, Ming Lu, Christian Pfeifer, Volker Alt, Denitsa Docheva
Software Mentions: 4
Published: about 4 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-08536-7

SERPINE1 associated with remodeling of the tumor microenvironment in colon cancer progression: a novel therapeutic target
Cited by: 26
Author(s): Shaokun Wang, Li Pang, Zuolong Liu, Xiangchuan Meng
Software Mentions: 4
Published: over 3 years ago

10.1097/MD.0000000000025008

PLCG2 as a potential indicator of tumor microenvironment remodeling in soft tissue sarcoma
Cited by: 10
Author(s): Zhengtian Li, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Gang Du, Lingling Jiang
Software Mentions: 4
Published: over 3 years ago

10.1097/MD.0000000000025715

Mining immune-related genes with prognostic value in the tumor microenvironment of breast invasive ductal carcinoma
Cited by: 1
Author(s): Qiang He, Shuyin Xue, Qingde Wa, Mei He, Feng Shan, Zhibing Chen, Wei Chen, Xinrong Luo
Software Mentions: 4
Published: over 3 years ago

10.1097/MD.0000000000026775

Single-cell transcriptional profiling reveals the heterogeneity in embryonal rhabdomyosarcoma
Cited by: 1
Author(s): Bo Hong, Tian Xia, Chun-Jing Ye, Yong Zhan, Ran Yang, Jia Liu, Yang Li, Zhi-Xue Chen, Wei Yao, Kai Li, Jia Wang, Rui Dong
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/6420425

Protein Kinase A Is Involved in Neuropathic Pain by Activating the p38MAPK Pathway to Mediate Spinal Cord Cell Apoptosis
Cited by: 9
Author(s): Yajun Deng, Liang Yang, Qiqi Xie, Fengbiao Yang, Guoqiang Li, Guang-Zhi Zhang, Shaoping Li, Zhi-Xi Wu, Jing Wang, Xuewen Kang
Software Mentions: 4
Published: over 4 years ago

10.1186/s12935-021-01833-y

Systematic analysis of the expression and prognosis relevance of FBXO family reveals the significance of FBXO1 in human breast cancer
Cited by: 17
Author(s): Yaqian Liu, Bo Pan, Weikun Qu, Yilong Cao, Jun Li, Hailin Zhao
Software Mentions: 4
Published: over 3 years ago

10.1016/j.bbih.2021.100265

Transcriptional profiling of macaque microglia reveals an evolutionary preserved gene expression program
Cited by: 4
Author(s): Marissa Dubbelaar, Chairi Misrielal, Jeffrey J. Bajramović, Saskia M. Burm, Ella A. Zuiderwijk‐Sick, Nieske Brouwer, Corien Grit, Susanne M. Kooistra, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, Hendrikus Boddeke, Bart J. L. Eggen
Software Mentions: 4
Published: over 3 years ago

10.1042/BSR20201725

A novel prognostic risk score model based on immune-related genes in patients with stage IV colorectal cancer
Cited by: 7
Author(s): Ke Xu, Jie He, Jie Zhang, Tao Liu, Fang Yang, Tao Ren
Software Mentions: 4
Published: about 4 years ago

10.1042/BSR20203459

CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
Cited by: 10
Author(s): Xiaojing Qin, Lin Xu, Guoqiang Xue, Huiying Fan, Haoyu Wang, Jing Wu, Da Pei
Software Mentions: 4
Published: almost 4 years ago

10.3389/fphar.2021.625543

The Synergistic Effects of 5-Aminosalicylic Acid and Vorinostat in the Treatment of Ulcerative Colitis
Cited by: 10
Author(s): Lina He, Shuting Wen, Zhuotai Zhong, Senhui Weng, Qilong Jiang, Hong Mi, Fengbin Liu
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/6628391

Identification of Prognostic Risk Model Based on DNA Methylation-Driven Genes in Esophageal Adenocarcinoma
Cited by: 2
Author(s): Yuhua Chen, Jinjie Wang, Hao Zhou, Zhanghao Huang, Qian Li, Wei Shi
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/8962090

Identification of Differentially Expressed lncRNAs and mRNAs in Children with Acquired Aplastic Anemia by RNA Sequencing
Cited by: 1
Author(s): Shaoying Lu, Xiaoxiao Song, Jing Chen, Xuguang Qiao
Software Mentions: 4
Published: over 4 years ago

10.1155/2021/6648182

L Antigen Family Member 3 Serves as a Prognostic Biomarker for the Clinical Outcome and Immune Infiltration in Skin Cutaneous Melanoma
Cited by: 4
Author(s): Jingjing Song, Cong Jin, Endong Chen, Xubin Dong, Li Zhu
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/9143695

Identification of Prognosis-Related Genes in Bladder Cancer Microenvironment across TCGA Database
Cited by: 7
Author(s): Xin Zhao, Yu Tang, Haoyu Ren, Yi Lei
Software Mentions: 4
Published: about 4 years ago

10.1111/jcmm.15650

Combined analysis of RNA‐sequence and microarray data reveals effective metabolism‐based prognostic signature for neuroblastoma
Cited by: 4
Author(s): Xinyao Meng, Chenzhao Feng, Erhu Fang, Jiexiong Feng, Xiang Zhao
Software Mentions: 4
Published: over 4 years ago

10.1186/s12974-020-02045-3

Transcriptional heterogeneity between primary adult grey and white matter astrocytes underlie differences in modulation of in vitro myelination
Cited by: 10
Author(s): Inge Werkman, Marissa Dubbelaar, Pieter van der Vlies, Jelkje J. de Boer-Bergsma, Bart J. L. Eggen, Wia Baron
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-021-94541-6

Identification of tumor microenvironment-related prognostic genes in colorectal cancer based on bioinformatic methods
Cited by: 15
Author(s): Yi Liu, Long Cheng, Chao Li, Chen Zhang, Lei Wang, Jiantao Zhang
Software Mentions: 4
Published: over 3 years ago

10.1186/s12885-021-07930-5

The construction and validation of an RNA binding protein-related prognostic model for bladder cancer
Cited by: 17
Author(s): Fengxia Chen, Qingqing Wang, Youwen Zhou
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: about 3 years ago

10.3389/fgene.2021.633059

Prediction of a Competing Endogenous RNA Co-expression Network by Comprehensive Methods in Systemic Sclerosis-Related Interstitial Lung Disease
Cited by: 2
Author(s): Yue-Mei Yan, Ji-Na Zheng, Liwei Wu, Qianwen Rao, Qiaorong Yang, Di Gao, Qiang Wang
Software Mentions: 4
Published: over 3 years ago

10.1155/2021/3803724

Comprehensive Analysis of m5C RNA Methylation Regulator Genes in Clear Cell Renal Cell Carcinoma
Cited by: 10
Author(s): Jiajin Wu, Chao Hou, Yuhao Wang, Zhongyuan Wang, Pu Li, Zengjun Wang
Software Mentions: 4
Published: about 3 years ago

10.1007/s00401-021-02327-x

Targeting fibroblast growth factor receptors to combat aggressive ependymoma
Cited by: 9
Author(s): Daniela Lötsch, Dominik Kirchhofer, Bernhard Englinger, Li Jiang, Konstantin Okonechnikov, Daniel Senfter, Anna Laemmerer, Lisa Gabler, Christine Pirker, Andrew M. Donson, Peter Bannauer, Pia Korbel, Carola Jaunecker, Jens-Martin Hübner, Lisa Mayr, Sibylle Madlener, Maria Theresa Schmook, Gerda Ricken, Kendra K. Maaß, Michael Grusch, Klaus Holzmann, Bettina Grasl‐Kraupp, Sabine Spiegl-Kreinecker, Jennifer L. Hsu, Christian Dorfer, Karl Rössler, Amedeo A. Azizi, Nicholas Foreman, Andreas Peyrl, Christine Haberler, Thomas Czech, Irene Slavc, Mariella G. Filbin, Kristian W. Pajtler, Marcel Kool, Walter Berger, Johannes Gojo
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2020.584624

Development and Validation of an RNA-Binding Protein-Based Prognostic Model for Ovarian Serous Cystadenocarcinoma
Cited by: 1
Author(s): Yunan He, Sen Zeng, Shunjie Hu, Fengqian Zhang, Nianchun Shan
Software Mentions: 4
Published: about 4 years ago

Projects: bioconductor: enrichplot

Papers Mentioning enrichplot 249