Projects: bioconductor: doppelgangR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/doppelgangR
Identify likely duplicate samples from genomic or meta-data
1 version
Latest release: over 2 years ago
10,552 downloads total
Enhanced Analysis
Educational Contributors:
lwaldron@hsph.harvard.edu
jennifer.wokaty@sph.cuny.edu
levi.waldron@hunter.cuny.edu
Repository Activity:
Repository Owner:
Waldron Lab at the CUNY SPH (organization)
Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City Academic
Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+60
Educational commit emails
3 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+2
Science terms in README
1 scientific terms found in README -
+5
Research institution maintainers
1 maintainers with research institution indicators
Penalties:
-
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning doppelgangR 3
10.12688/f1000research.10465.1
Meta-analysis of crowdsourced data compendia suggests pan-disease transcriptional signatures of autoimmunityCited by: 5
Author(s): William Lau, Rachel Sparks, John S. Tsang
Software Mentions: 5
Published: over 9 years ago
10.1186/s13059-014-0431-1
Genome-driven integrated classification of breast cancer validated in over 7,500 samplesCited by: 173
Author(s): H. Raza Ali, Oscar M. Rueda, Suet-Feung Chin, Christina Curtis, Mark J. Dunning, Samuel Aparicio, Carlos Caldas
Software Mentions: 5
Published: almost 12 years ago
10.1186/s13059-018-1511-4
Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysisCited by: 20
Author(s): Siyuan Ma, Shuji Ogino, Princy Parsana, Reiko Nishihara, Zhenyun Qian, Jeanne Shen, Kosuke Mima, Yohei Masugi, Yin Cao, Jonathan A. Nowak, Kaori Shima, Yujin Hoshida, Edward Giovannucci, Manish Gala, Andrew T. Chan, Charles S. Fuchs, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
Software Mentions: 1
Published: over 7 years ago