bioconductor: clusterProfiler | Projects

10.1186/s13018-021-02386-6

Overexpression of CRABP2 inhibits dexamethasone-induced apoptosis in human osteoblast cells
Cited by: 4
Author(s): Haiping Zhang, Ziliang Yu, Farui Sun, Jin Jin
Software Mentions: 1
Published: over 3 years ago

10.3389/fcvm.2020.602345

Comprehensive Analysis of the Immune Infiltrates and Aberrant Pathways Activation in Atherosclerotic Plaque
Cited by: 6
Author(s): Hukui Han, Rongsheng Du, Panke Cheng, Jiancheng Zhang, Chen Yang, Gang Li
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pcbi.1008686

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
Cited by: 63
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13018-021-02598-w

Salidroside promoted osteogenic differentiation of adipose-derived stromal cells through Wnt/β-catenin signaling pathway
Cited by: 4
Author(s): Xiaohua Li, Fu-ling Chen, Hong-lin Shen
Software Mentions: 1
Published: over 3 years ago

10.3390/plants10061132

Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.661599

Two Novel Pathogenic Variants of TJP2 Gene and the Underlying Molecular Mechanisms in Progressive Familial Intrahepatic Cholestasis Type 4 Patients
Cited by: 4
Author(s): Jia Tang, Meihua Tan, Yuewen Deng, Hui Tang, Haihong Shi, Mingzhen Li, Wei Ma, Jia Li, Hongzheng Dai, Jianli Li, Shengmei Zhou, Li Xu, Fengxiang Wei, Xiaofen Ma, Lixia Luo
Software Mentions: 1
Published: about 3 years ago

10.1186/s12865-019-0316-x

Immune cell infiltration characteristics and related core genes in lupus nephritis: results from bioinformatic analysis
Cited by: 51
Author(s): Ying Cao, Weihao Tang, Wanxin Tang
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.16737

The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ ATG2/ATG7/ATG16 axis
Cited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.701073

Genome Instability-Derived Genes Are Novel Prognostic Biomarkers for Triple-Negative Breast Cancer
Cited by: 6
Author(s): Maoni Guo, San Ming Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/jpm11070649

Identification of Therapeutic Targets for the Selective Killing of HBV-Positive Hepatocytes
Cited by: 0
Author(s): Chien Jung Huang, Lily Wang, Yu Chao Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.622424

Network and Pathway-Based Integrated Analysis Identified a Novel “rs28457673–miR-15/16/195/424/497 Family–IGF1R–MAPK Signaling Pathway” Axis Associated With Post-stroke Depression
Cited by: 5
Author(s): Yan Li, Zhichao Wang, Mingxi Zhu, Gui-Bo Fan, Gao-Shuo Xu, Tianyang Zhao, A-Yang Zhao, Shangwei Ning, Shijie Qi
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13148-021-01067-9

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
Cited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm8010073

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Cited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-5050-x

Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle
Cited by: 47
Author(s): Zexi Cai, Bernt Guldbrandtsen, Mogens Sandø Lund, Goutam Sahana
Software Mentions: 1
Published: about 6 years ago

10.3390/ani11051306

Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm Environments
Cited by: 2
Author(s): Sangdon Ryu, Minsoo Shin, Bohyun Yun, Woongji Lee, Hye‐Jin Choi, Min‐Kyoung Kang, Sangnam Oh, Younghoon Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm10194584

The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple Myeloma
Cited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.11368

Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data mining
Cited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.11698

LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancer
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.637781

Abnormal Glucose Metabolism in Male Mice Offspring Conceived by in vitro Fertilization and Frozen-Thawed Embryo Transfer
Cited by: 15
Author(s): Ning-Xin Qin, Zhiyang Zhou, Wenlong Zhao, Kexin Zou, Weihui Shi, Chuanjin Yu, Xia Liu, Ze-Han Dong, Yiting Mao, Xinmei Liu, Jian‐Zhong Sheng, Guo-Hui Ding, Yanting Wu, He‐Feng Huang
Software Mentions: 1
Published: almost 4 years ago

10.3390/foods10030625

Transcriptomic and Metabolomic Basis of Short- and Long-Term Post-Harvest UV-C Application in Regulating Grape Berry Quality Development
Cited by: 11
Author(s): Kekun Zhang, Wanping Li, Young‐Tae Ju, Xianhang Wang, Xiangyu Sun, Yulin Fang, Keqin Chen
Software Mentions: 1
Published: over 3 years ago

10.1152/ajpcell.00540.2019

Comparative profiling of skeletal muscle models reveals heterogeneity of transcriptome and metabolism
Cited by: 81
Author(s): Ahmed M. Abdelmoez, Laura Puig, Jonathon A. B. Smith, Brendan M. Gabriel, Mladen Savikj, Lucile Dollet, Alexander V. Chibalin, Anna Krook, Juleen R. Zierath, Nicolas Pillon
Software Mentions: 1
Published: over 4 years ago

10.1155/2021/5546199

Investigation of the Mechanism of Complement System in Diabetic Nephropathy via Bioinformatics Analysis
Cited by: 15
Author(s): Bojun Xu, Lei Wang, Huakui Zhan, Liangbin Zhao, Yuehan Wang, Meng‐Ru Shen, Keyang Xu, Li Li, Xu Luo, Shasha Zhou, Anqi Tang, Gang Liu, Lu Song, Yan Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.638366

Decoding the Mechanism of Huanglian Jiedu Decoction in Treating Pneumonia Based on Network Pharmacology and Molecular Docking
Cited by: 26
Author(s): Xianhai Li, Hua Tang, Qiang Tang, Wei Chen
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/1875980

Analysis of the Mechanism of Zhichuanling Oral Liquid in show="" $6#?=""Treating Bronchial Asthma Based on Network Pharmacology
Cited by: 7
Author(s): Wang Rui-yin, Jiangtao Lin
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-021-07521-5

Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)
Cited by: 0
Author(s): Pin-Yang Tu, Shin-Jie Huang, Venugopal Rajanbabu, Jen‐Leih Wu, Jyh-Yih Chen
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.11438

Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) development
Cited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/9210748

Comparative Study of PPARγ Targets in Human Extravillous and Villous Cytotrophoblasts
Cited by: 8
Author(s): Fulin Liu, Christine Rouault, Mickaël Guesnon, Wencan Zhu, Karine Clément, Séverine A. Degrelle, Thierry Fournier
Software Mentions: 1
Published: over 4 years ago

10.1186/s13601-020-00347-6

Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa
Cited by: 24
Author(s): Anu Laulajainen‐Hongisto, Annina Lyly, Tanzeela Hanif, Kishor Dhaygude, Matti Kankainen, Risto Renkonen, Kati Donner, Pirkko Mattila, Tuomas Jartti, Jean Bousquet, Paula Kauppi, Sanna Toppila‐Salmi
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.8380

Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma
Cited by: 4
Author(s): Minhua Rong, Zhan-Hui Zhu, Ying Guan, Meiwei Li, Jiashuo Zheng, Yue-qi Huang, Dan‐Ming Wei, Yingmei Li, Ximei Wu, Hui-ping Bu, Hui-liu Peng, Xiaolin Wei, Guosheng Li, Mingxuan Li, Ming‐Hui Chen, Su-Hua Huang
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.8357

Identification of key genes associated with multiple sclerosis based on gene expression data from peripheral blood mononuclear cells
Cited by: 11
Author(s): Zhenwei Shang, Wenjing Sun, Mingming Zhang, Lei Xu, Xueyuan Jia, Ruijie Zhang, Songbin Fu
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.11872

Proteomic analysis reveals some common proteins in the kidney stone matrix
Cited by: 14
Author(s): Yuanyuan Yang, Sen-Yuan Hong, Cong Liu, Jiaqiao Zhang, Henglong Hu, Xiaolong Chen, Kehua Jiang, Fa Sun, Qing Wang, Shaogang Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12967-020-02539-x

Gut microbiota from coronary artery disease patients contributes to vascular dysfunction in mice by regulating bile acid metabolism and immune activation
Cited by: 29
Author(s): Honghong Liu, Ran Tian, Hui Wang, Siqin Feng, Hanyu Li, Ying Xiao, Xiaodong Luan, Zhiyu Zhang, Na Shi, Haitao Niu
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2021.728415

Difference of Intrahost Dynamics of the Second Human Pegivirus and Hepatitis C Virus in HPgV-2/HCV-Coinfected Patients
Cited by: 4
Author(s): Yuanhao Liang, Fengyu Hu, Hang Fan, Linghua Li, Zhengwei Wan, Haiying Wang, Jingwei Shui, Yuanping Zhou, Yigang Tong, Weiping Cai, Shixing Tang
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.6668

Transcriptional factor regulation network and competitive endogenous RNA (ceRNA) network determining response of esophageal squamous cell carcinomas to neoadjuvant chemoradiotherapy
Cited by: 4
Author(s): Mingrui Shao, Wenya Li
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.12116

LncRNAs specifically overexpressed in endocervical adenocarcinoma are associated with an unfavorable recurrence prognosis and the immune response
Cited by: 1
Author(s): Yong Song, Long Nie, Yuting Zhang
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms22095051

Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)
Cited by: 0
Author(s): Li Tian, Chen Xu, Jinzhi Xu, Jian Luo, Bin Yu, Xianzhi Meng, Chunfeng Li, Guoqing Pan, Zeyang Zhou
Software Mentions: 1
Published: over 3 years ago

10.3389/fendo.2019.00877

Di (2-ethylhexyl) Phthalate Exposure Impairs the microRNAs Expression Profile During Primordial Follicle Assembly
Cited by: 7
Author(s): Jiaona Zhang, Ruiqian Zhang, Jing-Cai Liu, Lan Li, Wei Shen, Xiaowen Sun
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-018-5006-1

Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes
Cited by: 38
Author(s): Gülden Olgun, Özgür Şahin, Öznur Taştan
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-5227-3

Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models
Cited by: 21
Author(s): Qi Zhao, Qian Mao, Zheng Zhao, Tingfeng Dou, Zhiguo Wang, Xiaoyu Cui, Yuanning Liu, Xiaoya Fan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.719312

Serum Exosomal Circular RNA Expression Profile and Regulative Role in Proliferative Diabetic Retinopathy
Cited by: 14
Author(s): Xinsheng Li, Jingfan Wang, Huiming Qian, Yan Wang, Zhengyu Zhang, Zizhong Hu, Ping Xie
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-00826-0

Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysis
Cited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/1243743

Network Pharmacology of Yougui Pill Combined with Buzhong Yiqi Decoction for the Treatment of Sexual Dysfunction
Cited by: 16
Author(s): Yangyun Wang, Wandong Yu, Chaoliang Shi, Jiao Wei, Junhong Li, Jianchao Ge, Yang Hong, Guowei Shi
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-021-07753-5

Formation of autotriploid Carassius auratus and its fertility-related genes analysis
Cited by: 4
Author(s): Chongqing Wang, Xiang Luo, Huan Qin, Chun Zhang, Yang Li, Tingting Yu, Yuxin Zhang, Xu Huang, Xiaowei Xu, Qinbo Qin, Shaojun Liu
Software Mentions: 1
Published: over 3 years ago

10.1111/mpp.12865

Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of Xanthomonas citri
Cited by: 22
Author(s): Yanan Zhang, Doron Teper, Jin Xu, Nian Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.01252

Identification and Validation of an Immune-Related RNA Signature to Predict Survival of Patients With Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Shuo Wu, Xinyi Dai, Dielai Xie
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0178549

Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis
Cited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-019-0453-z

Cardiac interstitial tetraploid cells can escape replicative senescence in rodents but not large mammals
Cited by: 19
Author(s): Kathleen M. Broughton, Tiffany Khieu, Nicky Nguyen, Michael Rosa, Sadia Mohsin, Pearl Quijada, Bingyan Wang, Oscar Echeagaray, Dieter A. Kubli, Taeyong Kim, Fareheh Firouzi, Megan Monsanto, Natalie Gude, Robert Adamson, Walter P. Dembitsky, Michael Davis, Mark A. Sussman
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00419

Cryopreservation Induces Alterations of miRNA and mRNA Fragment Profiles of Bull Sperm
Cited by: 17
Author(s): Aishao Shangguan, Hao Zhou, Wei Sun, Rui Ding, Xihe Li, Jiajia Li, Yang Zhou, Xing Chen, Fengling Ding, Liguo Yang, Shujun Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s10020-020-00153-7

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line
Cited by: 6
Author(s): Manuela Mengozzi, Andrew Hesketh, Giselda Bucca, Pietro Ghezzi, Colin P. Smith
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules23123346

Drug Repurposing for Japanese Encephalitis Virus Infection by Systems Biology Methods
Cited by: 16
Author(s): Bo-Min Lv, Xili Tong, Quan Yuan, Meng‐Yuan Liu, Qingye Zhang, Yinglin Song, Hongyu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2018.00425

Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to Uveitis
Cited by: 6
Author(s): Shiheng Lu, Ke Zhao, Xuefei Wang, Hui Liu, Xiamuxiya Ainiwaer, Yixin Xu, Min Ye
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules26092830

Comprehensive Analysis of Transcriptome and Metabolome Reveals the Flavonoid Metabolic Pathway Is Associated with Fruit Peel Coloration of Melon
Cited by: 24
Author(s): Aiai Zhang, Jing Zheng, Xuemiao Chen, Xueyin Shi, Huaisong Wang, Qihua Fu
Software Mentions: 1
Published: over 3 years ago

10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.596794

Identifying Breast Cancer-Related Genes Based on a Novel Computational Framework Involving KEGG Pathways and PPI Network Modularity
Cited by: 13
Author(s): Yan Zhang, Xu Ju, Liang Tang, Jianming Li, Qingqing Lu, Geng Tian, Binsheng He, Jialiang Yang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22158089

Long-Term Fluoxetine Administration Causes Substantial Lipidome Alteration of the Juvenile Macaque Brain
Cited by: 8
Author(s): Anna Tkachev, Elena Stekolshchikova, Daniil Bobrovskiy, Nickolay Anikanov, Polina A Ogurtsova, Dong Ik Park, Anja K.E. Horn, Daria Petrova, Ekaterina Khrameeva, Mari S. Golub, Christoph W. Turck, Philipp Khaitovich
Software Mentions: 1
Published: over 3 years ago

10.1186/s12943-021-01369-9

KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1
Cited by: 35
Author(s): Lei Liu, Jianfeng Cui, Yajing Zhao, Xiaochen Liu, Lipeng Chen, Yangyang Xia, Yong Wang, Shouzhen Chen, Song Sun, Benkang Shi, Yongxin Zou
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22179395

The Regulatory Network of Sturgeon Chondroitin Sulfate on Colorectal Cancer Inhibition by Transcriptomic and Proteomic Analysis
Cited by: 1
Author(s): Rongqian Wu, Qian Shen, Guangyue Li, Pinglan Li, Nan Shang
Software Mentions: 1
Published: about 3 years ago

10.1186/s12943-019-1122-z

Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
Cited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12943-019-0996-0

Genome-wide identification of cancer-specific alternative splicing in circRNA
Cited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.657950

ATP2C2 Has Potential to Define Tumor Microenvironment in Breast Cancer
Cited by: 9
Author(s): Jiazhou Liu, Yu Wei, Yushen Wu, Jie Li, Jiazheng Sun, Guosheng Ren, Hongzhong Li
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-020-01348-8

Myostatin regulates fatty acid desaturation and fat deposition through MEF2C/miR222/SCD5 cascade in pigs
Cited by: 20
Author(s): Hongyan Ren, Wei Xiao, Xiangjing Qin, Gangzhi Cai, Hao Chen, Zhen Hua, Cheng Cheng, Xinglei Li, Hua Hsi Wu, Hong‐Wei Xiao, Liping Zhang, Jiali Dai, Xin Zheng, Zhe Zhu, Chong Qian, Jie Yao, Ye Bi
Software Mentions: 1
Published: about 4 years ago

10.1186/s12943-020-01279-2

circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathway
Cited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-34334-6

DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohort
Cited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-39582-8

Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity Loci
Cited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43924-x

FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformatics
Cited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.614773

Comprehensive Transcriptomic Analysis Reveals the Role of the Immune Checkpoint HLA-G Molecule in Cancers
Cited by: 8
Author(s): Huihui Xu, Jing Gan, Dan-Ping Xu, Lü Li, Wei‐Hua Yan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12951-021-00810-x

Uterine metabolic disorder induced by silica nanoparticles: biodistribution and bioactivity revealed by labeling with FITC
Cited by: 13
Author(s): Shuyin Duan, Meihua Zhang, Junxia Li, Jiaqi Tian, Haiyan Yin, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 3 years ago

10.1097/MD.0000000000025452

Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinoma
Cited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-019-5715-0

Overlapping and unique roles played by ROCK1 and 2 in the modulation of coding and long noncoding RNA expression
Cited by: 3
Author(s): Zhou He, Jigang Zhang, Xue Zhang, Guorong Fan, Liu Gao-lin, Qin Li
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.203288

Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma
Cited by: 21
Author(s): Dongsheng He, Lifang Cai, Wei‐Ming Huang, Qing-Qing Weng, Xi Lin, Mengxing You, Shengyin Liao
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.202000648

CDKL3 promotes osteosarcoma progression by activating Akt/PKB
Cited by: 6
Author(s): Aina He, Lanjing Ma, Yujing Huang, Haijiao Zhang, Wei Duan, Zexu Li, Fei Teng, Junqing Yuan, Hao Wu, Liguo Liu, Yuqiang Bai, Wentao Dai, Yonggang Wang, Hongtao Li, Yong Sun, Yaling Wang, Chunyan Wang, Ting Yuan, Qingcheng Yang, Songhai Tian, Min Dong, Ren Sheng, Dongxi Xiang
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.708747

The Spleen as a Target to Characterize Immunomodulatory Effects of Down-Stream Processed Cyberlindnera jadinii Yeasts in Atlantic Salmon Exposed to a Dietary Soybean Meal Challenge
Cited by: 8
Author(s): Byron Morales‐Lange, Jeleel Opeyemi Agboola, Jon Øvrum Hansen, Leidy Lagos, Ove Øyås, Luís Mercado, Liv Torunn Mydland, Margareth Øverland
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-54401-w

Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behavior
Cited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.101902

Role of global aberrant alternative splicing events in papillary thyroid cancer prognosis
Cited by: 29
Author(s): Peng Lin, Rong‐Quan He, Zhi‐Guang Huang, Rui Zhang, Huayu Wu, Lin Shi, Xiao‐Jiao Li, Qing Li, Gang Chen, Hong Yang, Yun He
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-0918-0

The feather degradation mechanisms of a new Streptomyces sp. isolate SCUT-3
Cited by: 40
Author(s): Zhiwei Li, Shuang Liang, Ke Yao, Jun‐Jin Deng, Ming-Shu Zhang, De‐Lin Lu, Jiazhou Li, Xiao‐Chun Luo
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.603507

MAFB and MAF Transcription Factors as Macrophage Checkpoints for COVID-19 Severity
Cited by: 16
Author(s): Miguel A. Vega, Miriam Simón-Fuentes, Arturo González de la Aleja, Concha Nieto, Marı́a Colmenares, Cristina Herrero, Ángeles Domínguez-Soto, Ángel L. Corbí
Software Mentions: 1
Published: about 4 years ago

10.1155/2019/4237285

FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes
Cited by: 9
Author(s): Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shuzhen Guo
Software Mentions: 1
Published: almost 5 years ago

10.1155/2020/8897879

Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal Cancer
Cited by: 5
Author(s): Qiaowei Fan, Lin Guo, Jing-Ming Guan, Jing Chen, Yujing Fan, Zhendong Chen, Hulun Li
Software Mentions: 1
Published: almost 4 years ago

10.1152/jn.00837.2018

Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad
Cited by: 5
Author(s): Thomas J. Vajtay, Akhil Bandi, Aman Upadhyay, Mavis R. Swerdel, Ronald P. Hart, Christian R. Lee, David J. Margolis
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.669893

Premature Senescence and Increased Oxidative Stress in the Thymus of Down Syndrome Patients
Cited by: 14
Author(s): Genni Enza Marcovecchio, Francesca Ferrua, Elena Fontana, Stefano Beretta, Marco Genua, Ileana Bortolomai, Anastasia Conti, Davide Montin, Maria Teresa Cascarano, Sonia Bergante, Veronica D’Oria, Alessandro Giamberti, Donato Amodio, Caterina Cancrini, Adriano Carotti, Raffaella Di Micco, Ivan Merelli, Marita Bosticardo, Anna Villa
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2021.678661

Chronic Obstructive Pulmonary Disease Patients Have Increased Levels of Plasma Inflammatory Mediators Reported Upregulated in Severe COVID-19
Cited by: 6
Author(s): Nathalie Acevedo, Jose Miguel Escamilla-Gil, Héctor Espinoza, Ronald Regino, Jonathan Ramírez, Lucila Florez de Arco, Rodolfo Dennis, Carlos A. Torres‐Duque, Luis Caraballo
Software Mentions: 1
Published: over 3 years ago

10.1002/cam4.3820

Construction and validation of an autophagy‐related long noncoding RNA signature for prognosis prediction in kidney renal clear cell carcinoma patients
Cited by: 11
Author(s): Junjie Yu, Weipu Mao, Bin Xu, Ming Chen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-61163-3

A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte Maturation
Cited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 4 years ago

10.1155/2020/7103412

Potential Genes Associated with the Survival of Lung Adenocarcinoma Were Identified by Methylation
Cited by: 2
Author(s): Ziyuan Shen, Chenlu He, Haimiao Chen, Lishun Xiao, Yingliang Jin, Shuiping Huang
Software Mentions: 1
Published: about 4 years ago

10.1155/2020/8873371

Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an Example
Cited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12995-021-00308-0

Serum levels of miR-21-5p and miR-339-5p associate with occupational trichloroethylene hypersensitivity syndrome
Cited by: 4
Author(s): Wei Liu, Jian Zheng, Xiaohu Ren, Yuxuan Xie, Dafeng Lin, Peimao Li, Yuan Lv, Maggie Pui Man Hoi, Yanfang Zhang, Jianjun Li
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.679241

The abaI/abaR Quorum Sensing System Effects on Pathogenicity in Acinetobacter baumannii
Cited by: 11
Author(s): Xiaoyu Sun, Zhaohui Ni, Jie Tang, Yue Ding, Xinlei Wang, Fan Li
Software Mentions: 1
Published: over 3 years ago

10.1007/s00262-020-02688-4

Chemotherapy negatively impacts the tumor immune microenvironment in NSCLC: an analysis of pre- and post-treatment biopsies in the multi-center SAKK19/09 study
Cited by: 7
Author(s): Michael A. Amrein, E D Bührer, Q Li, Sacha I. Rothschild, Carsten Riether, Rolf Jaggi, Spasenija Savic-Prince, Lukas Bubendorf, Oliver Gautschi, Adrian F. Ochsenbein
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01730

Cold Acclimation Improves the Desiccation Stress Resilience of Polar Strains of Klebsormidium (Streptophyta)
Cited by: 10
Author(s): Martin Rippin, Nadine Borchhardt, Ulf Karsten, Burkhard Becker
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.570903

Transcriptomic Profiling of Mouse Brain During Acute and Chronic Infections by Toxoplasma gondii Oocysts
Cited by: 8
Author(s): Rui-Si Hu, Jun-Jun He, Hany M. Elsheikha, Yang Zou, Muhammad Ehsan, Qiao-Ni Ma, Xingquan Zhu, Wei Cong
Software Mentions: 1
Published: about 4 years ago

10.1186/s12863-020-00920-9

Meta-analyses of genome wide association studies in lines of laying hens divergently selected for feather pecking using imputed sequence level genotypes
Cited by: 11
Author(s): Clemens Falker‐Gieske, Hanna Iffland, Siegfried Preuß, W. Bessei, Cord Drögemüller, Jörn Bennewitz, Jens Tetens
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.00341

Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
Cited by: 16
Author(s): Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine‐Radhouane Khouja, Claude Murat, Kerrie Barry, Erika Lindquist, Francis Martin, Silvia Perotto
Software Mentions: 1
Published: over 4 years ago

10.1186/s12863-020-00869-9

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance
Cited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11061639

Mediterranean Pine Vole, Microtus duodecimcostatus: A Paradigm of an Opportunistic Breeder
Cited by: 5
Author(s): Miguel Lao-Pérez, Diaa Massoud, Francisca M. Real, Alicia Hurtado, Esperanza Ortega, Miguel Burgos, Rafael Jiménez, Francisco Barrionuevo
Software Mentions: 1
Published: over 3 years ago

10.3390/curroncol28050305

Comprehensive Proteomic Analysis of Colon Cancer Tissue Revealed the Reason for the Worse Prognosis of Right-Sided Colon Cancer and Mucinous Colon Cancer at the Protein Level
Cited by: 5
Author(s): Yanyu Chen, W Y Hou, Min-Er Zhong, Bin Wu
Software Mentions: 1
Published: about 3 years ago

10.1155/2020/3829092

Network Pharmacology Strategy to Investigate the Pharmacological Mechanism of HuangQiXiXin Decoction on Cough Variant Asthma and Evidence-Based Medicine Approach Validation
Cited by: 7
Author(s): Qingqing Xia, Mingtao Liu, Hui Li, Lijun Tian, Qi Jia, Yufeng Zhang
Software Mentions: 1
Published: about 4 years ago

10.1186/s12906-020-03026-y

Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius L
Cited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: about 4 years ago

10.18632/aging.202315

CCDC170 affects breast cancer apoptosis through IRE1 pathway
Cited by: 10
Author(s): Qiong Wang, Yanrui Zhao, Hong Zheng, Qinghua Wang, Wei Wang, Ben Liu, Hongwei Han, Lina Zhang, Kexin Chen
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-020-07541-6

High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancer
Cited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/s12935-018-0712-y

Analysis of PD-1 related immune transcriptional profile in different cancer types
Cited by: 14
Author(s): Jun Shang, Qian Song, Zaixing Yang, Xiaoyan Sun, Meijuan Xue, Wenjie Chen, Jingcheng Yang, Sihua Wang
Software Mentions: 1
Published: almost 6 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223