Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: almost 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3390/foods10030625
Transcriptomic and Metabolomic Basis of Short- and Long-Term Post-Harvest UV-C Application in Regulating Grape Berry Quality DevelopmentCited by: 11
Author(s): Kekun Zhang, Wanping Li, Young‐Tae Ju, Xianhang Wang, Xiangyu Sun, Yulin Fang, Keqin Chen
Software Mentions: 1
Published: over 5 years ago
10.3390/foods10071451
Transcriptome Characterization and Expression Profiles of Disease Defense-Related Genes of Table Grapes in Response to Pichia anomala Induced with ChitosanCited by: 6
Author(s): Wenjing Hu, Esa Abiso Godana, Meiqiu Xu, Qiya Yang, Solairaj Dhanasekaran, Hongyin Zhang
Software Mentions: 1
Published: over 5 years ago
10.1155/2019/6272073
Exploring Pharmacological Mechanisms of Xiang Ju Tablets in the Treatment of Allergic Rhinitis via a Network Pharmacology ApproachCited by: 6
Author(s): Ke Hu, Xi Duan, Li zhu Han, Hong ye Ju, Bin Wang, Zhi Tang, Xiao Song
Software Mentions: 1
Published: about 7 years ago
10.1155/2021/6614039
A Network Pharmacology Approach to Explore the Mechanisms of Artemisiae scopariae Herba for the Treatment of Chronic Hepatitis BCited by: 5
Author(s): Asi He, Wei Wang, Xia Yang, Xiaoping Niu
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/1248920
System Pharmacology-Based Strategy to Decode the Synergistic Mechanism of GanDouLing for Wilson’s DiseaseCited by: 1
Author(s): Juan Zhang, Hong Chen, Bao Yuan-cheng, Denghui Xie, Weiren Yang, Huaizhou Jiang, Ting Dong, Hui Han
Software Mentions: 1
Published: over 5 years ago
10.1007/s00262-020-02688-4
Chemotherapy negatively impacts the tumor immune microenvironment in NSCLC: an analysis of pre- and post-treatment biopsies in the multi-center SAKK19/09 studyCited by: 7
Author(s): Michael A. Amrein, E D Bührer, Q Li, Sacha I. Rothschild, Carsten Riether, Rolf Jaggi, Spasenija Savic-Prince, Lukas Bubendorf, Oliver Gautschi, Adrian F. Ochsenbein
Software Mentions: 1
Published: about 6 years ago
10.1186/s12943-021-01369-9
KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1Cited by: 35
Author(s): Lei Liu, Jianfeng Cui, Yajing Zhao, Xiaochen Liu, Lipeng Chen, Yangyang Xia, Yong Wang, Shouzhen Chen, Song Sun, Benkang Shi, Yongxin Zou
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/8578615
Exploring the Molecular Mechanism of Astragali Radix-Curcumae Rhizoma against Gastric Intraepithelial Neoplasia by Network Pharmacology and Molecular DockingCited by: 2
Author(s): Yuejin Ji, Yajun Liu, Jingyi Hu, Cheng Cheng, Jing Xing, Lei Zhu, Hong Shen
Software Mentions: 1
Published: about 5 years ago
10.3390/cancers13102369
MicroRNAs Deregulated in Intraductal Papillary Mucinous Neoplasm Converge on Actin Cytoskeleton-Related Pathways That Are Maintained in Pancreatic Ductal AdenocarcinomaCited by: 0
Author(s): Elena Fernandez-Castañer, María Vila-Casadesús, Elena Vila-Navarro, Carolina Parra, Juan José Lozano, Antoni Castells, Meritxell Gironella
Software Mentions: 1
Published: over 5 years ago
10.1186/s12943-019-1122-z
Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy responseCited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers12123667
Common and Unique Transcription Signatures of YAP and TAZ in Gastric Cancer CellsCited by: 9
Author(s): Yaelim Lee, Megan Finch-Edmondson, Hamizah Ahmad Cognart, Bowen Zhu, Haiwei Song, Boon Chuan Low, Marius Sudol
Software Mentions: 1
Published: almost 6 years ago
10.1155/2019/7631365
Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin PrescriptionsCited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: almost 7 years ago
10.1111/jcmm.15390
p75NTR optimizes the osteogenic potential of human periodontal ligament stem cells by up‐regulating α1 integrin expressionCited by: 3
Author(s): Jun Li, Manzhu Zhao, Yingying Wang, Ming Shen, Shuai Wang, Mengying Tang, Meng Li, Yuting Luo, Kun Yang, Xiang Wen
Software Mentions: 1
Published: over 6 years ago
10.1111/jcmm.15230
Magnesium isoglycyrrhizinate prevents the nonalcoholic hepatic steatosis via regulating energy homeostasisCited by: 13
Author(s): Wenkai Jiang, Shiyu Xu, Huijie Guo, Li Lu, Jie Liu, Guangji Wang, Kun Hao
Software Mentions: 1
Published: over 6 years ago
10.1111/jcmm.14758
Proteomics of epicardial adipose tissue in patients with heart failureCited by: 23
Author(s): Lei Zhao, Zongsheng Guo, Pan Wang, Meimei Zheng, Xiaoyan Yang, Ye Liu, Zheng Ma, Mulei Chen, Xinchun Yang
Software Mentions: 1
Published: almost 7 years ago
10.26508/lsa.202000648
CDKL3 promotes osteosarcoma progression by activating Akt/PKBCited by: 6
Author(s): Aina He, Lanjing Ma, Yujing Huang, Haijiao Zhang, Wei Duan, Zexu Li, Fei Teng, Junqing Yuan, Hao Wu, Liguo Liu, Yuqiang Bai, Wentao Dai, Yonggang Wang, Hongtao Li, Yong Sun, Yaling Wang, Chunyan Wang, Ting Yuan, Qingcheng Yang, Songhai Tian, Min Dong, Ren Sheng, Dongxi Xiang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12943-019-0996-0
Genome-wide identification of cancer-specific alternative splicing in circRNACited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 7 years ago
10.7150/jca.48661
Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosisCited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: almost 6 years ago
10.7150/jca.50370
Increased IGFBP7 Expression Correlates with Poor Prognosis and Immune Infiltration in Gastric CancerCited by: 13
Author(s): Zhao Qi, Rulin Zhao, Conghua Song, Huan Wang, Jianfang Rong, Fangfei Wang, Lili Yan, Yanping Song, Yong Xie
Software Mentions: 1
Published: almost 6 years ago
10.7150/jca.39328
Effect of CELSR3 on the Cell Cycle and Apoptosis of Hepatocellular Carcinoma CellsCited by: 8
Author(s): Zucheng Xie, Yi‐Wu Dang, Huayu Wu, Rong‐Quan He, Jie Ma, Zhigang Peng, Minhua Rong, Zhekun Li, Jiapeng Yang, Yizhao Jiang, Gang Chen, Lihua Yang
Software Mentions: 1
Published: almost 7 years ago
10.7150/jca.33737
Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell CarcinomaCited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: almost 7 years ago
10.1007/s10815-016-0745-x
Differentially expressed genes in preimplantation human embryos: potential candidate genes for blastocyst formation and implantationCited by: 13
Author(s): Erika Munch, Amy E.T. Sparks, Jesús González Bosquet, Lane K. Christenson, Eric J. Devor, Bradley J. Van Voorhis
Software Mentions: 1
Published: over 10 years ago
10.1186/s12859-019-2639-2
FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experimentsCited by: 28
Author(s): Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki, Dario Greco
Software Mentions: 1
Published: over 7 years ago
10.31557/APJCP.2021.22.6.1799
Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical CancerCited by: 8
Author(s): Cecile Meneur, Sangavi Eswaran, Divya Adiga, S. Sriharikrishnaa, Nadeem Khan G, Sandeep Mallya, Sanjiban Chakrabarty, Shama Prasada Kabekkodu
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.16307
Role of EIF4G1 network in non‐small cell lung cancers (NSCLC) cell survival and disease progressionCited by: 7
Author(s): Luis Del Valle, Lu Dai, Hui‐Yi Lin, Zhen Lin, Jungang Chen, Steven R. Post, Zhiqiang Qin
Software Mentions: 1
Published: over 5 years ago
10.1186/s40104-019-0326-9
Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencingCited by: 15
Author(s): Yuebo Zhang, Longchao Zhang, Jin Yue, Wei Xia, Ligang Wang, Xin Liu, Hongmei Gao, Xinhua Hou, Fuping Zhao, Hua Yan, Lixian Wang
Software Mentions: 1
Published: over 7 years ago
10.1172/jci.insight.144863
IGF1R controls mechanosignaling in myofibroblasts required for pulmonary alveologenesisCited by: 12
Author(s): Hua He, John Snowball, Fei Sun, Cheng-Lun Na, Jeffrey A. Whitsett
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/8057587
Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental VerificationCited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago
10.1186/s12943-020-01279-2
circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathwayCited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12885-021-08655-1
Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironmentCited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.21872
A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapyCited by: 5
Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: almost 9 years ago
10.18632/oncotarget.20902
MicroRNAs as predictors for CNS relapse of systemic diffuse large B-cell lymphomaCited by: 13
Author(s): Nir Pillar, Osnat Bairey, Neta Goldschmidt, Yakov Fellig, Yevgenia Rosenblat, Itchak Shehtman, Danielle Haguel, Pia Raanani, Noam Shomron, Tali Siegal
Software Mentions: 1
Published: about 9 years ago
10.1155/2020/3829092
Network Pharmacology Strategy to Investigate the Pharmacological Mechanism of HuangQiXiXin Decoction on Cough Variant Asthma and Evidence-Based Medicine Approach ValidationCited by: 7
Author(s): Qingqing Xia, Mingtao Liu, Hui Li, Lijun Tian, Qi Jia, Yufeng Zhang
Software Mentions: 1
Published: almost 6 years ago
10.3390/ani11051306
Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm EnvironmentsCited by: 2
Author(s): Sangdon Ryu, Minsoo Shin, Bohyun Yun, Woongji Lee, Hye‐Jin Choi, Min‐Kyoung Kang, Sangnam Oh, Younghoon Kim
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-021-08029-7
The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemiaCited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago
10.1111/jcmm.16737
The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ <i>ATG2/ATG7/ATG16</i> axisCited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-021-08517-w
TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinomaCited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.19699
RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone <i>in vitro</i>: significance to steroidogenesisCited by: 19
Author(s): Guoliang Zhang, Ruiqian Zhang, Xiao‐Feng Sun, Shun‐Feng Cheng, Yufeng Wang, Chuanliang Ji, Yanzhong Feng, Jie Yu, Wei Ge, Yong Zhao, Shiduo Sun, Wei Shen, Lan Li
Software Mentions: 1
Published: about 9 years ago
10.1016/j.gpb.2019.05.004
The Biological Significance of Multi-copy Regions and Their Impact on Variant DiscoveryCited by: 0
Author(s): Jing Sun, Yanfang Zhang, Minhui Wang, Qian Guan, Xiujia Yang, Jin Xia Ou, Mingchen Yan, Chengrui Wang, Yan Zhang, Zhi-Hao Li, Chunhong Lan, Mao Chen, Hongwei Zhou, Bingtao Hao, Zhenhai Zhang
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.17452
Prognostic value of DNA repair genes based on stratification of glioblastomasCited by: 11
Author(s): Kai Sun, Qiwen Duan, Gang Liu, Jing‐Min Lu
Software Mentions: 1
Published: over 9 years ago
10.3390/jcm8010073
Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics ApproachesCited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: over 7 years ago
10.1186/s13059-020-02239-1
Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shapeCited by: 42
Author(s): Jiantao Guan, Yaoguang Xu, Yan Yu, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang, Jianhua Wei, Hua Xie
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.11698
LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancerCited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: about 5 years ago
10.1186/s12885-020-07457-1
Genetically-regulated transcriptomics & copy number variation of proctitis points to altered mitochondrial and DNA repair mechanisms in individuals of European ancestryCited by: 5
Author(s): Gita A. Pathak, Renato Polimanti, Talisa Silzer, Frank R. Wendt, Ranajit Chakraborty, Nicole R. Phillips
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.13379
Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palateCited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12885-020-07541-6
High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancerCited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: almost 6 years ago
10.3390/ani11061639
Mediterranean Pine Vole, Microtus duodecimcostatus: A Paradigm of an Opportunistic BreederCited by: 5
Author(s): Miguel Lao-Pérez, Diaa Massoud, Francisca M. Real, Alicia Hurtado, Esperanza Ortega, Miguel Burgos, Rafael Jiménez, Francisco Barrionuevo
Software Mentions: 1
Published: over 5 years ago
10.3390/genes11101225
Systems Level Analysis and Identification of Pathways and Key Genes Associated with DeliriumCited by: 5
Author(s): Yukiko Takahashi, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.11368
Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data miningCited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12906-020-03026-y
Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius LCited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.anireprosci.2020.106621
RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoaCited by: 14
Author(s): M. Arul Prakash, A. Kumaresan, Manish Kumar Sinha, K. Elango, Tushar Kumar Mohanty, Tirtha Kumar Datta, Jane M. Morrell
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/8873371
Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an ExampleCited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41421-020-0182-y
An in vivo strategy for knockdown of circular RNAsCited by: 24
Author(s): Nagarjuna Reddy Pamudurti, Inés Lucía Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastián Kadener
Software Mentions: 1
Published: about 6 years ago
10.1186/s12863-020-00869-9
Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistanceCited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: over 6 years ago
10.1186/s12863-020-00920-9
Meta-analyses of genome wide association studies in lines of laying hens divergently selected for feather pecking using imputed sequence level genotypesCited by: 11
Author(s): Clemens Falker‐Gieske, Hanna Iffland, Siegfried Preuß, W. Bessei, Cord Drögemüller, Jörn Bennewitz, Jens Tetens
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/8897879
Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal CancerCited by: 5
Author(s): Qiaowei Fan, Lin Guo, Jing-Ming Guan, Jing Chen, Yujing Fan, Zhendong Chen, Hulun Li
Software Mentions: 1
Published: almost 6 years ago
10.1152/ajpcell.00540.2019
Comparative profiling of skeletal muscle models reveals heterogeneity of transcriptome and metabolismCited by: 81
Author(s): Ahmed M. Abdelmoez, Laura Puig, Jonathon A. B. Smith, Brendan M. Gabriel, Mladen Savikj, Lucile Dollet, Alexander V. Chibalin, Anna Krook, Juleen R. Zierath, Nicolas Pillon
Software Mentions: 1
Published: over 6 years ago
10.3389/fonc.2019.01492
Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung CancerCited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-019-5715-0
Overlapping and unique roles played by ROCK1 and 2 in the modulation of coding and long noncoding RNA expressionCited by: 3
Author(s): Zhou He, Jigang Zhang, Xue Zhang, Guorong Fan, Liu Gao-lin, Qin Li
Software Mentions: 1
Published: over 7 years ago
10.3389/fonc.2020.580027
Relevance of STK11 Mutations Regarding Immune Cell Infiltration, Drug Sensitivity, and Cellular Processes in Lung AdenocarcinomaCited by: 7
Author(s): Zhenqing Li, Bo Ding, Jianxun Xu, Kai Mao, Pengfei Zhang, Qun Xue
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13287-020-01594-x
Intra-articular delivery of extracellular vesicles secreted by chondrogenic progenitor cells from MRL/MpJ superhealer mice enhances articular cartilage repair in a mouse injury modelCited by: 45
Author(s): Rikang Wang, Wei Jiang, Lang Zhang, Sai‐Sai Xie, Shuai Zhang, Shenfang Yuan, Yi Jin, Guangqian Zhou
Software Mentions: 1
Published: over 6 years ago
10.1155/2019/1243743
Network Pharmacology of Yougui Pill Combined with Buzhong Yiqi Decoction for the Treatment of Sexual DysfunctionCited by: 16
Author(s): Yangyun Wang, Wandong Yu, Chaoliang Shi, Jiao Wei, Junhong Li, Jianchao Ge, Yang Hong, Guowei Shi
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12864-021-07753-5
Formation of autotriploid Carassius auratus and its fertility-related genes analysisCited by: 4
Author(s): Chongqing Wang, Xiang Luo, Huan Qin, Chun Zhang, Yang Li, Tingting Yu, Yuxin Zhang, Xu Huang, Xiaowei Xu, Qinbo Qin, Shaojun Liu
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers13061239
The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem CellsCited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.659720
Jiyuan Oridonin A Overcomes Differentiation Blockade in Acute Myeloid Leukemia Cells With MLL Rearrangements via Multiple Signaling PathwaysCited by: 10
Author(s): Mei Qu, Yu Duan, Min Zhao, Zhanju Wang, Mengjie Zhao, Yao Zhao, Haihua Wang, Ke Yu, Ying Liu, Hong‐Min Liu, Liuya Wei, Zhenbo Hu
Software Mentions: 1
Published: over 5 years ago
10.1186/s13287-020-02114-7
Donor heart preservation with hypoxic-conditioned medium-derived from bone marrow mesenchymal stem cells improves cardiac function in a heart transplantation modelCited by: 10
Author(s): Pengyu Zhou, Hao Líu, Ximao Liu, Langtao Xiao, Zezhou Xiao, Peng Zhu, Yujie Zhu, Jun Lu, Shaoyi Zheng
Software Mentions: 1
Published: over 5 years ago
10.1186/s13287-021-02317-6
Curcumin-primed human BMSC-derived extracellular vesicles reverse IL-1β-induced catabolic responses of OA chondrocytes by upregulating miR-126-3pCited by: 42
Author(s): Shushan Li, Sabine Stöckl, Christoph Lukas, Marietta Herrmann, Christoph Brochhausen, Matthias König, Brian Johnstone, Susanne Grässel
Software Mentions: 1
Published: over 5 years ago
10.1186/s13018-020-01679-6
PENK inhibits osteosarcoma cell migration by activating the PI3K/Akt signaling pathwayCited by: 10
Author(s): Haiping Zhang, Ziliang Yu, Bingbing Wu, Farui Sun
Software Mentions: 1
Published: over 6 years ago
10.3390/cancers13092195
Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 InteractionsCited by: 0
Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.579351
TIM-3 as a Prognostic Marker and a Potential Immunotherapy Target in Human Malignant Tumors: A Meta-Analysis and Bioinformatics ValidationCited by: 32
Author(s): Kui Zang, Liangliang Hui, Min Wang, Ying Huang, Xingxing Zhu, Bin Yao
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.616372
Identification and Confirmation of the miR-30 Family as a Potential Central Player in Tobacco-Related Head and Neck Squamous Cell CarcinomaCited by: 6
Author(s): Tingting Zhang, Xueqiong Zhu, Qiang Sun, Xing Qin, Zhen Zhang, Yongdong Feng, Ming Yan, Wantao Chen
Software Mentions: 1
Published: about 5 years ago
10.1155/2020/1875980
Analysis of the Mechanism of Zhichuanling Oral Liquid in show="" $6#?=""Treating Bronchial Asthma Based on Network PharmacologyCited by: 7
Author(s): Wang Rui-yin, Jiangtao Lin
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-018-5227-3
Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network modelsCited by: 21
Author(s): Qi Zhao, Qian Mao, Zheng Zhao, Tingfeng Dou, Zhiguo Wang, Xiaoyu Cui, Yuanning Liu, Xiaoya Fan
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-018-5006-1
Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypesCited by: 38
Author(s): Gülden Olgun, Özgür Şahin, Öznur Taştan
Software Mentions: 1
Published: about 8 years ago
10.3389/fonc.2020.567042
Expressions of miR-302a, miR-105, and miR-888 Play Critical Roles in Pathogenesis, Radiotherapy, and Prognosis on Rectal Cancer Patients: A Study From Rectal Cancer Patients in a Swedish Rectal Cancer Trial of Preoperative Radiotherapy to Big Database AnalysesCited by: 7
Author(s): Meng Wei, Surajit Pathak, Xueli Zhang, Gunnar Adell, Ingvar Jarlsfelt, Birgitta Holmlund, Ziqiang Wang, Alexander S Zhang, Hong Zhang, Zong‐Guang Zhou, Xiao‐Feng Sun
Software Mentions: 1
Published: about 6 years ago
10.1155/2021/9213205
Circular RNA hsa_circ_0006117 Facilitates Pancreatic Cancer Progression by Regulating the miR-96-5p/KRAS/MAPK Signaling PathwayCited by: 4
Author(s): Tao Liu, Lei Zhou, Zhiwei He, Yankun Chen, Xueyi Jiang, Jian Xu, Jianxin Jiang
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.101902
Role of global aberrant alternative splicing events in papillary thyroid cancer prognosisCited by: 29
Author(s): Peng Lin, Rong‐Quan He, Zhi‐Guang Huang, Rui Zhang, Huayu Wu, Lin Shi, Xiao‐Jiao Li, Qing Li, Gang Chen, Hong Yang, Yun He
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-021-07521-5
Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)Cited by: 0
Author(s): Pin-Yang Tu, Shin-Jie Huang, Venugopal Rajanbabu, Jen‐Leih Wu, Jyh-Yih Chen
Software Mentions: 1
Published: over 5 years ago
10.1155/2020/4086864
Identification of the Active Constituents and Significant Pathways of Cangfu Daotan Decoction for the Treatment of PCOS Based on Network PharmacologyCited by: 13
Author(s): Wenting Xu, Mengyu Tang, Jiahui Wang, Lihong Wang
Software Mentions: 1
Published: over 6 years ago
10.1155/2021/8862821
Network Pharmacology and Bioinformatics Methods Reveal the Mechanism of Zao-Jiao-Ci in the Treatment of LSCCCited by: 1
Author(s): Feng Xiang, Linman Li, Jieling Lin, Shasha Li, Guiyuan Peng
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.591545
PAFAH1B3 Expression Is Correlated With Gastric Cancer Cell Proliferation and Immune InfiltrationCited by: 8
Author(s): Tianyu Xie, Xin Guo, Di Wu, Shuo Li, Yuhan Lu, Xinxin Wang, Lin Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-018-5050-x
Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattleCited by: 47
Author(s): Zexi Cai, Bernt Guldbrandtsen, Mogens Sandø Lund, Goutam Sahana
Software Mentions: 1
Published: about 8 years ago
10.1186/s12865-019-0316-x
Immune cell infiltration characteristics and related core genes in lupus nephritis: results from bioinformatic analysisCited by: 51
Author(s): Ying Cao, Weihao Tang, Wanxin Tang
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12920-020-0661-x
Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancerCited by: 28
Author(s): Jianfeng Liang, Wanni Zhao, Pan Tong, Ping Li, Yuanli Zhao, Hua Li, Jun Liang
Software Mentions: 1
Published: over 6 years ago
10.3389/fnut.2021.639467
Network and 16S rRNA Sequencing-Combined Approach Provides Insightal Evidence of Vitamin K2 for Salt-Sensitive HypertensionCited by: 6
Author(s): Tianhao Liu, Minghao Chen, Wan-qing Tu, Qiuer Liang, Wencong Tao, Jin Zhen, Xiao Ye, Liguo Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-020-00984-2
An epigenome-wide association study of early-onset major depression in monozygotic twinsCited by: 28
Author(s): Roxann Roberson‐Nay, Dana M. Lapato, Aaron R. Wolen, Eva Lancaster, Bradley T. Webb, Bradley Verhulst, John M. Hettema, Timothy P. York
Software Mentions: 1
Published: about 6 years ago
10.1186/s12920-021-00994-z
Deregulation of lncRNA HIST1H2AG-6 and AIM1-3 in peripheral blood mononuclear cells is associated with newly diagnosed type 2 diabetesCited by: 3
Author(s): Hui Jiang, Peian Lou, Xiaoluo Chen, Chenguang Wu, Shihe Shao
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-021-03092-5
Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)Cited by: 5
Author(s): Zhiyuan Liu, Hongbing She, Zhaosheng Xu, Helong Zhang, Guoliang Li, Shifan Zhang, Wei Qian
Software Mentions: 1
Published: over 5 years ago
10.1186/s12918-018-0657-8
Network-based logistic regression integration method for biomarker identificationCited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: almost 8 years ago
10.1155/2020/7049812
Deciphering the Underlying Mechanism of Eucommiae Cortex against Osteoporotic Fracture by Network PharmacologyCited by: 6
Author(s): Yongming Shuai, Zhili Jiang, Qiu-Wen Yuan, Shu-Qiang Tu, Fanhui Zeng
Software Mentions: 1
Published: about 6 years ago
10.1155/2021/5546199
Investigation of the Mechanism of Complement System in Diabetic Nephropathy via Bioinformatics AnalysisCited by: 15
Author(s): Bojun Xu, Lei Wang, Huakui Zhan, Liangbin Zhao, Yuehan Wang, Meng‐Ru Shen, Keyang Xu, Li Li, Xu Luo, Shasha Zhou, Anqi Tang, Gang Liu, Lu Song, Yan Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12983-021-00387-z
Population genomics reveal rapid genetic differentiation in a recently invasive population of Rattus norvegicusCited by: 7
Author(s): Yi Chen, Lei Zhao, Huajing Teng, Cheng-Min Shi, Quansheng Liu, Jianxu Zhang, Yaohua Zhang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-61163-3
A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte MaturationCited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 6 years ago
10.3389/fphar.2020.00798
A TCM Formula YYWY Inhibits Tumor Growth in Non-Small Cell Lung Cancer and Enhances Immune-Response Through Facilitating the Maturation of Dendritic CellsCited by: 18
Author(s): Bei Zhao, Xiaodan Hui, Lijing Jiao, Ling Bi, Lei Wang, Pinbo Huang, Wenxiao Yang, Yinan Yin, Shenyi Jin, Chengyan Wang, Xue Zhang, Ling Xu
Software Mentions: 1
Published: over 6 years ago
10.3389/fphar.2021.646187
Network Pharmacology for Analyzing the Key Targets and Potential Mechanism of Wogonin in GliomasCited by: 6
Author(s): Zaizhong Wang, Lulu Cheng, Zhigang Shang, Zhihui Li, Yong Zhao, Wenwen Jin, Yingyue Li, Fangchu Su, Xiaobo Mao, Chuanliang Chen, Jianhua Zhang
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2020.573501
Development of a Novel Serum Exosomal MicroRNA Nomogram for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Squamous Cell CarcinomaCited by: 9
Author(s): Tong Liu, Du Li, Yunshan Wang, Shanyu Gao, Juan Li, Peilong Li, Zhaowei Sun, Helen Binang, Chuanxin Wang
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-54401-w
Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behaviorCited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-019-43924-x
FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformaticsCited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-019-39582-8
Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity LociCited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-018-34334-6
DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohortCited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: almost 8 years ago