bioconductor: clusterProfiler | Projects

10.1155/2021/1984690

Identification of Diagnostic CpG Signatures in Patients with Gestational Diabetes Mellitus via Epigenome-Wide Association Study Integrated with Machine Learning
Cited by: 2
Author(s): Yan Liu, Hui Geng, Bide Duan, Xiangdong Yang, Anlun Ma, Xiaoyan Ding
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/5024942

Identification of an Immune Gene Expression Signature for Predicting Lung Squamous Cell Carcinoma Prognosis
Cited by: 5
Author(s): Yubo Yan, Minghui Zhang, Shanqi Xu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani11061639

Mediterranean Pine Vole, Microtus duodecimcostatus: A Paradigm of an Opportunistic Breeder
Cited by: 5
Author(s): Miguel Lao-Pérez, Diaa Massoud, Francisca M. Real, Alicia Hurtado, Esperanza Ortega, Miguel Burgos, Rafael Jiménez, Francisco Barrionuevo
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2018.00425

Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to Uveitis
Cited by: 6
Author(s): Shiheng Lu, Ke Zhao, Xuefei Wang, Hui Liu, Xiamuxiya Ainiwaer, Yixin Xu, Min Ye
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1008686

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
Cited by: 63
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2019.01492

Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung Cancer
Cited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: over 6 years ago

10.1111/mpp.12865

Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of <i>Xanthomonas citri</i>
Cited by: 22
Author(s): Yanan Zhang, Doron Teper, Jin Xu, Nian Wang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/8578615

Exploring the Molecular Mechanism of Astragali Radix-Curcumae Rhizoma against Gastric Intraepithelial Neoplasia by Network Pharmacology and Molecular Docking
Cited by: 2
Author(s): Yuejin Ji, Yajun Liu, Jingyi Hu, Cheng Cheng, Jing Xing, Lei Zhu, Hong Shen
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.701073

Genome Instability-Derived Genes Are Novel Prognostic Biomarkers for Triple-Negative Breast Cancer
Cited by: 6
Author(s): Maoni Guo, San Ming Wang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2021.596794

Identifying Breast Cancer-Related Genes Based on a Novel Computational Framework Involving KEGG Pathways and PPI Network Modularity
Cited by: 13
Author(s): Yan Zhang, Xu Ju, Liang Tang, Jianming Li, Qingqing Lu, Geng Tian, Binsheng He, Jialiang Yang
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/6685929

Proteomic Profiling Reveals the Molecular Changes of Insomnia Patients
Cited by: 2
Author(s): Guanying Wang, Xiaojuan Ren, Xingping Zhang, Qingquan Wang, Tao Liu, Ning Deng, Di Yan
Software Mentions: 1
Published: over 5 years ago

10.1080/21623945.2021.1908655

MiR-33a plays a crucial role in the proliferation of bovine preadipocytes
Cited by: 8
Author(s): Wenzhen Zhang, Li Wang, Sayed Haidar Abbas Raza, Xiaoyu Wang, Guohu Wang, Chengcheng Liang, Gong Chen, Bingzhi Li, Linsen Zan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12918-018-0657-8

Network-based logistic regression integration method for biomarker identification
Cited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2020.622424

Network and Pathway-Based Integrated Analysis Identified a Novel “rs28457673–miR-15/16/195/424/497 Family–IGF1R–MAPK Signaling Pathway” Axis Associated With Post-stroke Depression
Cited by: 5
Author(s): Yan Li, Zhichao Wang, Mingxi Zhu, Gui-Bo Fan, Gao-Shuo Xu, Tianyang Zhao, A-Yang Zhao, Shangwei Ning, Shijie Qi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07753-5

Formation of autotriploid Carassius auratus and its fertility-related genes analysis
Cited by: 4
Author(s): Chongqing Wang, Xiang Luo, Huan Qin, Chun Zhang, Yang Li, Tingting Yu, Yuxin Zhang, Xu Huang, Xiaowei Xu, Qinbo Qin, Shaojun Liu
Software Mentions: 1
Published: about 5 years ago

10.1016/j.anireprosci.2020.106621

RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoa
Cited by: 14
Author(s): M. Arul Prakash, A. Kumaresan, Manish Kumar Sinha, K. Elango, Tushar Kumar Mohanty, Tirtha Kumar Datta, Jane M. Morrell
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13061239

The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem Cells
Cited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6630659

Identification of miRNAs as the Crosstalk in the Interaction between Neural Stem/Progenitor Cells and Endothelial Cells
Cited by: 2
Author(s): Xin Wang, Simin Li, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xianda Hu, Aneesha Acharya, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, Hanluo Li, Sebastian Gaus, Bernd Lethaus, Vuk Savković, Zhi Su
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10061132

Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: about 5 years ago

10.1155/2018/9303486

Identification of Six Potentially Long Noncoding RNAs as Biomarkers Involved Competitive Endogenous RNA in Clear Cell Renal Cell Carcinoma
Cited by: 24
Author(s): Kang Yang, Xiaofan Lu, Pengfei Luo, Jie Zhang
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/1673486

Identification of Key Genes and Long Noncoding RNA-Associated Competing Endogenous RNA (ceRNA) Networks in Early-Onset Preeclampsia
Cited by: 14
Author(s): Zhan Zhang, Ping Wang, Lin-Lin Zhang, Chenxi Huang, Jun Gao, Yingying Li, Bo Yang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-00826-0

Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysis
Cited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: about 9 years ago

10.1186/s10020-020-00153-7

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line
Cited by: 6
Author(s): Manuela Mengozzi, Andrew Hesketh, Giselda Bucca, Pietro Ghezzi, Colin P. Smith
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-54401-w

Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behavior
Cited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103826

Comprehensive analysis of TGF-&#x3B2;-induced mRNAs and ncRNAs in hepatocellular carcinoma
Cited by: 8
Author(s): Jintai Liang, Jinli Liao, Tongtong Liu, Yu Wang, Jingyuan Wen, Ning Cai, Zhao Hu, Weiqi Xu, Ganxun Li, Zeyang Ding, Bixiang Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08655-1

Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironment
Cited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: almost 5 years ago

10.31557/APJCP.2021.22.6.1799

Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical Cancer
Cited by: 8
Author(s): Cecile Meneur, Sangavi Eswaran, Divya Adiga, S. Sriharikrishnaa, Nadeem Khan G, Sandeep Mallya, Sanjiban Chakrabarty, Shama Prasada Kabekkodu
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00396

Integrative Analysis of DiseaseLand Omics Database for Disease Signatures and Treatments: A Bipolar Case Study
Cited by: 7
Author(s): Wang Chun, Bevan Emma Huang, Guang Chen, Timothy W. Lovenberg, David Pocalyko, Xiang Yao
Software Mentions: 1
Published: about 7 years ago

10.1186/s13148-021-01067-9

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
Cited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/8831948

The Genetic and Epigenetic Mechanisms Involved in Irreversible Pulp Neural Inflammation
Cited by: 7
Author(s): XI Xiao-xi, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xiangqiong Liu, Yupei Deng, Junming Xi, Haitong Pan, Qian Lin, Bo Li, Wanchen Ning, Xiao Jiang, Hanluo Li, Simin Li, Xianda Hu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41398-020-00984-2

An epigenome-wide association study of early-onset major depression in monozygotic twins
Cited by: 28
Author(s): Roxann Roberson‐Nay, Dana M. Lapato, Aaron R. Wolen, Eva Lancaster, Bradley T. Webb, Bradley Verhulst, John M. Hettema, Timothy P. York
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-021-03092-5

Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)
Cited by: 5
Author(s): Zhiyuan Liu, Hongbing She, Zhaosheng Xu, Helong Zhang, Guoliang Li, Shifan Zhang, Wei Qian
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/6611018

A Network Pharmacology to Explore the Mechanism of Calculus Bovis in the Treatment of Ischemic Stroke
Cited by: 8
Author(s): Fangchen Liu, Ling Li, Jian Chen, Ying Wu, Yongbing Cao, Ping Zhong
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.573501

Development of a Novel Serum Exosomal MicroRNA Nomogram for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Tong Liu, Du Li, Yunshan Wang, Shanyu Gao, Juan Li, Peilong Li, Zhaowei Sun, Helen Binang, Chuanxin Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.625977

A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network Analysis
Cited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/9025481

NR3C2-Related Transcriptome Profile and Clinical Outcome in Invasive Breast Carcinoma
Cited by: 5
Author(s): Jianjun Lu, Fang Hu, Yingling Zhou
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.655885

Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.
Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/6472153

Establishment and Evaluation of a 6-Gene Survival Risk Assessment Model Related to Lung Adenocarcinoma Microenvironment
Cited by: 14
Author(s): Zhitian Wang, Huiling Xu, Linhai Zhu, Tianyu He, Wang Lv, Zhigang Wu
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.25165

Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left-right organizer
Cited by: 23
Author(s): Bárbara Tavares, Raquel Jacinto, Pedro Sampaio, Sara Pestana, Andreia Pinto, Andreia Vaz, Mónica Roxo-Rosa, Rui Gardner, Telma Lopes, Britta Schilling, Ian Henry, Leonor Saúde, Susana S. Lopes
Software Mentions: 1
Published: almost 9 years ago

10.3389/fgene.2019.00305

Transcriptome Analysis Revealed a Highly Connected Gene Module Associated With Cirrhosis to Hepatocellular Carcinoma Development
Cited by: 25
Author(s): Shan Shan, Wei Chen, Jidong Jia
Software Mentions: 1
Published: about 7 years ago

10.3390/molecules23123346

Drug Repurposing for Japanese Encephalitis Virus Infection by Systems Biology Methods
Cited by: 16
Author(s): Bo-Min Lv, Xili Tong, Quan Yuan, Meng‐Yuan Liu, Qingye Zhang, Yinglin Song, Hongyu Zhang
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.202315

CCDC170 affects breast cancer apoptosis through IRE1 pathway
Cited by: 10
Author(s): Qiong Wang, Yanrui Zhao, Hong Zheng, Qinghua Wang, Wei Wang, Ben Liu, Hongwei Han, Lina Zhang, Kexin Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2021.697308

Identification of Key Genes Mutations Associated With the Radiosensitivity by Whole Exome Sequencing in Pancreatic Cancer
Cited by: 3
Author(s): Bin Hu, Xiumei Ma, Rongfu Huang, Zheng Wu, Jun Lü, Yuntao Guo, Jianmin Tang, Chunhui Ma, Jun Ma, Lei Zhang, Yongrui Bai
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules26092830

Comprehensive Analysis of Transcriptome and Metabolome Reveals the Flavonoid Metabolic Pathway Is Associated with Fruit Peel Coloration of Melon
Cited by: 24
Author(s): Aiai Zhang, Jing Zheng, Xuemiao Chen, Xueyin Shi, Huaisong Wang, Qihua Fu
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/3159831

Clinical Significance and Prognostic Value of miR-28-5p in Colon Cancer
Cited by: 4
Author(s): Jilin Li, Kezhi Li, Min Xie, Yanping Tang, Yin-Lin Tang, Bang-li Hu
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/1248920

System Pharmacology-Based Strategy to Decode the Synergistic Mechanism of GanDouLing for Wilson’s Disease
Cited by: 1
Author(s): Juan Zhang, Hong Chen, Bao Yuan-cheng, Denghui Xie, Weiren Yang, Huaizhou Jiang, Ting Dong, Hui Han
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/2862701

Bioinformatics Analysis of Key Genes and circRNA-miRNA-mRNA Regulatory Network in Gastric Cancer
Cited by: 20
Author(s): Yiting Tian, Xing Yang, Zheng Zhang, Rui Peng, Luyu Zhang, Yan Sun
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.680873

Significance of DMBT1 in Papillary Thyroid Carcinoma Concurrent With Hashimoto’s Thyroiditis
Cited by: 2
Author(s): Xiao‐Xiong Gan, Ya-Yi Li, Sijin Li, Shi-Sen Mo, Jianhua Feng, Fei Shen, Wei Cai, Ye-Qian Lai, Bo Xu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13287-020-01594-x

Intra-articular delivery of extracellular vesicles secreted by chondrogenic progenitor cells from MRL/MpJ superhealer mice enhances articular cartilage repair in a mouse injury model
Cited by: 45
Author(s): Rikang Wang, Wei Jiang, Lang Zhang, Sai‐Sai Xie, Shuai Zhang, Shenfang Yuan, Yi Jin, Guangqian Zhou
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.00908

Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
Cited by: 6
Author(s): Dongmei Wu, Zhengkun Zhou, Shao‐Hua Fan, Zihui Zheng, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Xi Hong, Yuxin Zheng
Software Mentions: 1
Published: over 6 years ago

10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/8057587

Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental Verification
Cited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.637781

Abnormal Glucose Metabolism in Male Mice Offspring Conceived by in vitro Fertilization and Frozen-Thawed Embryo Transfer
Cited by: 15
Author(s): Ning-Xin Qin, Zhiyang Zhou, Wenlong Zhao, Kexin Zou, Weihui Shi, Chuanjin Yu, Xia Liu, Ze-Han Dong, Yiting Mao, Xinmei Liu, Jian‐Zhong Sheng, Guo-Hui Ding, Yanting Wu, He‐Feng Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-021-01369-9

KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1
Cited by: 35
Author(s): Lei Liu, Jianfeng Cui, Yajing Zhao, Xiaochen Liu, Lipeng Chen, Yangyang Xia, Yong Wang, Shouzhen Chen, Song Sun, Benkang Shi, Yongxin Zou
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.202685

Downregulation of FPN1 acts as a prognostic biomarker associated with immune infiltration in lung cancer
Cited by: 9
Author(s): Bing Liu, Zhen Song, Yumei Fan, Guangyu Zhang, Pengxiu Cao, Danyu Li, Xiaopeng Liu, Yan‐Zhong Chang, Karsoon Tan
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8897879

Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal Cancer
Cited by: 5
Author(s): Qiaowei Fan, Lin Guo, Jing-Ming Guan, Jing Chen, Yujing Fan, Zhendong Chen, Hulun Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00206

CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
Cited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago

10.1186/s12943-019-1122-z

Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
Cited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm10194584

The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple Myeloma
Cited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-021-07521-5

Comparative transcriptome analysis reveals ectopic delta-5 and delta-6 desaturases enhance protective gene expression upon Vibrio vulnificus challenge in Tilapia (Oreochromis niloticus)
Cited by: 0
Author(s): Pin-Yang Tu, Shin-Jie Huang, Venugopal Rajanbabu, Jen‐Leih Wu, Jyh-Yih Chen
Software Mentions: 1
Published: about 5 years ago

10.1186/s12943-019-0996-0

Genome-wide identification of cancer-specific alternative splicing in circRNA
Cited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/7631365

Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin Prescriptions
Cited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: over 6 years ago

10.3389/fnut.2021.639467

Network and 16S rRNA Sequencing-Combined Approach Provides Insightal Evidence of Vitamin K2 for Salt-Sensitive Hypertension
Cited by: 6
Author(s): Tianhao Liu, Minghao Chen, Wan-qing Tu, Qiuer Liang, Wencong Tao, Jin Zhen, Xiao Ye, Liguo Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.638366

Decoding the Mechanism of Huanglian Jiedu Decoction in Treating Pneumonia Based on Network Pharmacology and Molecular Docking
Cited by: 26
Author(s): Xianhai Li, Hua Tang, Qiang Tang, Wei Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-020-02114-7

Donor heart preservation with hypoxic-conditioned medium-derived from bone marrow mesenchymal stem cells improves cardiac function in a heart transplantation model
Cited by: 10
Author(s): Pengyu Zhou, Hao Líu, Ximao Liu, Langtao Xiao, Zezhou Xiao, Peng Zhu, Yujie Zhu, Jun Lu, Shaoyi Zheng
Software Mentions: 1
Published: over 5 years ago

10.1186/s13287-021-02317-6

Curcumin-primed human BMSC-derived extracellular vesicles reverse IL-1β-induced catabolic responses of OA chondrocytes by upregulating miR-126-3p
Cited by: 42
Author(s): Shushan Li, Sabine Stöckl, Christoph Lukas, Marietta Herrmann, Christoph Brochhausen, Matthias König, Brian Johnstone, Susanne Grässel
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8873371

Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an Example
Cited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-020-01279-2

circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathway
Cited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.650863

Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
Cited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers12040801

Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor Cells
Cited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.11368

Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data mining
Cited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.11698

LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancer
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: almost 5 years ago

10.1155/2021/5546199

Investigation of the Mechanism of Complement System in Diabetic Nephropathy via Bioinformatics Analysis
Cited by: 15
Author(s): Bojun Xu, Lei Wang, Huakui Zhan, Liangbin Zhao, Yuehan Wang, Meng‐Ru Shen, Keyang Xu, Li Li, Xu Luo, Shasha Zhou, Anqi Tang, Gang Liu, Lu Song, Yan Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s12863-020-00869-9

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance
Cited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani11051306

Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm Environments
Cited by: 2
Author(s): Sangdon Ryu, Minsoo Shin, Bohyun Yun, Woongji Lee, Hye‐Jin Choi, Min‐Kyoung Kang, Sangnam Oh, Younghoon Kim
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.631187

A Study of the Regulatory Mechanism of the CB1/PPARγ2/PLIN1/HSL Pathway for Fat Metabolism in Cattle
Cited by: 8
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.056564

The transcriptional landscape of the cultured murine middle ear epithelium in vitro
Cited by: 0
Author(s): Apoorva Mulay, Miraj Kobad Chowdhury, Cameron James, Lynne Bingle, Colin D. Bingle
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-81642-5

Transcriptome profiling of cells exposed to particular and intense electromagnetic radiation emitted by the "SG-III" prototype laser facility
Cited by: 4
Author(s): Jiangbin Wei, Qiwu Shi, Li Xiong, Guang Xin, Yi Tao, Yunqing Xiao, Wenlong Huang
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000648

CDKL3 promotes osteosarcoma progression by activating Akt/PKB
Cited by: 6
Author(s): Aina He, Lanjing Ma, Yujing Huang, Haijiao Zhang, Wei Duan, Zexu Li, Fei Teng, Junqing Yuan, Hao Wu, Liguo Liu, Yuqiang Bai, Wentao Dai, Yonggang Wang, Hongtao Li, Yong Sun, Yaling Wang, Chunyan Wang, Ting Yuan, Qingcheng Yang, Songhai Tian, Min Dong, Ren Sheng, Dongxi Xiang
Software Mentions: 1
Published: about 6 years ago

10.1155/2019/5894926

Identification and Validation of Core Genes Involved in the Development of Papillary Thyroid Carcinoma via Bioinformatics Analysis
Cited by: 6
Author(s): Xiaoyan Li, Jing He, Mingxia Zhou, Yun Cao, Yonglong Jin, Qiang Zou
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-018-5006-1

Discovering lncRNA mediated sponge interactions in breast cancer molecular subtypes
Cited by: 38
Author(s): Gülden Olgun, Özgür Şahin, Öznur Taştan
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-018-5227-3

Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models
Cited by: 21
Author(s): Qi Zhao, Qian Mao, Zheng Zhao, Tingfeng Dou, Zhiguo Wang, Xiaoyu Cui, Yuanning Liu, Xiaoya Fan
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.11438

Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) development
Cited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.52695

Tgfβ signaling is critical for maintenance of the tendon cell fate
Cited by: 55
Author(s): Guak Kim Tan, Brian A. Pryce, Anna Stabio, John V. Brigande, Chaojie Wang, Zheng Xia, Sara F. Tufa, Douglas R. Keene, Ronen Schweitzer
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-021-00994-z

Deregulation of lncRNA HIST1H2AG-6 and AIM1-3 in peripheral blood mononuclear cells is associated with newly diagnosed type 2 diabetes
Cited by: 3
Author(s): Hui Jiang, Peian Lou, Xiaoluo Chen, Chenguang Wu, Shihe Shao
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.688746

Poria cum Radix Pini Rescues Barium Chloride-Induced Arrhythmia by Regulating the cGMP-PKG Signalling Pathway Involving ADORA1 in Zebrafish
Cited by: 2
Author(s): Ning-Juan Yang, Yanru Liu, Zhishu Tang, Jin‐Ao Duan, Yongmei Yan, Zhong-Xing Song, Ming-Geng Wang, Yuru Zhang, Bai-Jin Chang, Mingwen Zhao, Yan-Ting Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-79086-4

Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysis
Cited by: 27
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-021-02183-5

Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma
Cited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphar.2020.00798

A TCM Formula YYWY Inhibits Tumor Growth in Non-Small Cell Lung Cancer and Enhances Immune-Response Through Facilitating the Maturation of Dendritic Cells
Cited by: 18
Author(s): Bei Zhao, Xiaodan Hui, Lijing Jiao, Ling Bi, Lei Wang, Pinbo Huang, Wenxiao Yang, Yinan Yin, Shenyi Jin, Chengyan Wang, Xue Zhang, Ling Xu
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.646187

Network Pharmacology for Analyzing the Key Targets and Potential Mechanism of Wogonin in Gliomas
Cited by: 6
Author(s): Zaizhong Wang, Lulu Cheng, Zhigang Shang, Zhihui Li, Yong Zhao, Wenwen Jin, Yingyue Li, Fangchu Su, Xiaobo Mao, Chuanliang Chen, Jianhua Zhang
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/4237285

FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes
Cited by: 9
Author(s): Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shuzhen Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2021.622268

Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan–Dou–Fu–Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model
Cited by: 4
Author(s): Taohua Wei, Wenjie Hao, Lulu Tang, Huan Wu, Shi Huang, Yongmei Yang, Nannan Qian, Jie Liu, Weiren Yang, Xianchun Duan
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.644140

The Mechanism of Lavender Essential Oil in the Treatment of Acute Colitis Based on “Quantity–Effect” Weight Coefficient Network Pharmacology
Cited by: 13
Author(s): Yao Wang, Junbo Zou, Yanzhuo Jia, Xiaofei Zhang, Changli Wang, Yajun Shi, Deliang Guo, Zhenfeng Wu, Wang Fang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.618844

How Aconiti Radix Cocta can Treat Gouty Arthritis Based on Systematic Pharmacology and UPLC-QTOF-MS/MS
Cited by: 10
Author(s): Xietao Ye, Jinlin Wu, Dayong Zhang, Zelun Lan, Songhong Yang, Jing Zhu, Ming Yang, Qingjie Gong, Lei Zhong
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/9210748

Comparative Study of PPAR<i>γ</i> Targets in Human Extravillous and Villous Cytotrophoblasts
Cited by: 8
Author(s): Fulin Liu, Christine Rouault, Mickaël Guesnon, Wencan Zhu, Karine Clément, Séverine A. Degrelle, Thierry Fournier
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.594833

Computational and In Vitro Analysis of Plumbagin’s Molecular Mechanism for the Treatment of Hepatocellular Carcinoma
Cited by: 6
Author(s): Yanfei Wei, Yu‐Hsuan Lin, Wanjun Chen, Shasha Li, Lei Jin, Delun Huang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.720619

The Downregulation of eIF3a Contributes to Vemurafenib Resistance in Melanoma by Activating ERK via PPP2R1B
Cited by: 4
Author(s): Shilong Jiang, Zhi-Bin Wang, Tao Zhu, Ting Jiang, Jiang-Feng Fei, Chong Liu, Chao Luo, Yan Cheng, Zhao‐Qian Liu
Software Mentions: 1
Published: almost 5 years ago

10.1080/21655979.2020.1822714

A new metabolic signature contributes to disease progression and predicts worse survival in melanoma
Cited by: 7
Author(s): Mengdi Wan, Binyu Zhuang, Xiaohui Dai, Liang Zhang, Fangqing Zhao, Yan You
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.532041

Ginsenoside Re Treatment Attenuates Myocardial Hypoxia/Reoxygenation Injury by Inhibiting HIF-1α Ubiquitination
Cited by: 11
Author(s): Huiyuan Sun, Shukuan Ling, Di Zhao, Jianwei Li, Yang Li, Hua Qu, Ronghui Du, Ying Zhang, Feng Xu, Yuheng Li, Caizhi Liu, Guangming Zhong, Shuai Liang, Zizhong Liu, Xingcheng Gao, Xiaoyan Jin, Yingxian Li, Donglei Shi
Software Mentions: 1
Published: almost 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223