bioconductor: clusterProfiler | Projects

10.1016/j.ebiom.2021.103378

Clinical features and prognostic factors in Covid-19: A prospective cohort study
Cited by: 72
Author(s): Sanne de Bruin, Lieuwe D. J. Bos, Marian A. van Roon, Anita M. Tuip-de Boer, Alex R. Schuurman, Marleen J.A. Koel-Simmelinck, Harm Jan Bogaard, Pieter R. Tuinman, Michiel A. van Agtmael, Jörg Hamann, Charlotte E. Teunissen, W. Joost Wiersinga, Aeilko H. Zwinderman, Matthijs C. Brouwer, Diederik van de Beek, Alexander P.J. Vlaar, Anne Geke Algera, Brent Appelman, Frank van Baarle, Diane Bax, Martijn Beudel, Marije Bomers, Peter I. Bonta, Michela Botta, Justin de Brabander, Godelieve de Bree, David T.P. Buis, Marianna Bugiani, Esther Bulle, Osoul Chouchane, Alex Cloherty, Maurits C F J de Rotte, Mirjam Dijkstra, Dave A. Dongelmans, Romein W. G. Dujardin, Paul Elbers, Lucas M. Fleuren, Suzanne E. Geerlings, T.B.H. Geijtenbeek, Armand R.J. Girbes, Abraham Goorhuis, Martin P. Grobusch, Florianne Hafkamp, Laura A. Hagens, Vanessa Harris, Robert Hemke, Sabine Hermans, Leo Heunks, Markus W. Hollmann, Janneke Horn, Joppe W. Hovius, Menno D. de Jong, Rutger Koning, Endry H T Lim, Niels van Mourik, Jeannine Nellen, Esther J. Nossent, Frederique Paulus, Edgar Peters, Dan Piña-Fuentes, Tom van der Poll, Bennedikt Preckel, Jan M. Prins, Jorinde Raasveld, Tom D. Y. Reijnders, Michiel Schinkel, Femke A. P. Schrauwen, Marcus J. Schultz, Alex Schuurmans, Jaap Schuurmans, Kim C.E. Sigaloff, Marleen A. Slim, Patrick Smeele, Marry R. Smit, Cornelis Stijnis, Willemke Stilma, Patrick Thoral, Anissa M. Tsonas, Marc van der Valk, Denise P. Veelo, Carolien Volleman, Heder de Vries, Lonneke A. van Vught, Michèle van Vugt, Dorien Wouters
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.13379

Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palate
Cited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: over 9 years ago

10.3389/fnut.2021.639467

Network and 16S rRNA Sequencing-Combined Approach Provides Insightal Evidence of Vitamin K2 for Salt-Sensitive Hypertension
Cited by: 6
Author(s): Tianhao Liu, Minghao Chen, Wan-qing Tu, Qiuer Liang, Wencong Tao, Jin Zhen, Xiao Ye, Liguo Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.101902

Role of global aberrant alternative splicing events in papillary thyroid cancer prognosis
Cited by: 29
Author(s): Peng Lin, Rong‐Quan He, Zhi‐Guang Huang, Rui Zhang, Huayu Wu, Lin Shi, Xiao‐Jiao Li, Qing Li, Gang Chen, Hong Yang, Yun He
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2019.01492

Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung Cancer
Cited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: over 6 years ago

10.1186/s12863-020-00920-9

Meta-analyses of genome wide association studies in lines of laying hens divergently selected for feather pecking using imputed sequence level genotypes
Cited by: 11
Author(s): Clemens Falker‐Gieske, Hanna Iffland, Siegfried Preuß, W. Bessei, Cord Drögemüller, Jörn Bennewitz, Jens Tetens
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12863-020-00869-9

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance
Cited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.661599

Two Novel Pathogenic Variants of TJP2 Gene and the Underlying Molecular Mechanisms in Progressive Familial Intrahepatic Cholestasis Type 4 Patients
Cited by: 4
Author(s): Jia Tang, Meihua Tan, Yuewen Deng, Hui Tang, Haihong Shi, Mingzhen Li, Wei Ma, Jia Li, Hongzheng Dai, Jianli Li, Shengmei Zhou, Li Xu, Fengxiang Wei, Xiaofen Ma, Lixia Luo
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.12116

LncRNAs specifically overexpressed in endocervical adenocarcinoma are associated with an unfavorable recurrence prognosis and the immune response
Cited by: 1
Author(s): Yong Song, Long Nie, Yuting Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12906-020-03026-y

Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius L
Cited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6971503

Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Simiao Powder on Knee Osteoarthritis
Cited by: 17
Author(s): Zhengquan Huang, Xianglin Shi, Xiaochen Li, Li Zhang, Peng Wu, Jun J. Mao, Runlin Xing, Nongshan Zhang, Peimin Wang
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-019-0453-z

Cardiac interstitial tetraploid cells can escape replicative senescence in rodents but not large mammals
Cited by: 19
Author(s): Kathleen M. Broughton, Tiffany Khieu, Nicky Nguyen, Michael Rosa, Sadia Mohsin, Pearl Quijada, Bingyan Wang, Oscar Echeagaray, Dieter A. Kubli, Taeyong Kim, Fareheh Firouzi, Megan Monsanto, Natalie Gude, Robert Adamson, Walter P. Dembitsky, Michael Davis, Mark A. Sussman
Software Mentions: 1
Published: about 7 years ago

10.1155/2021/6614039

A Network Pharmacology Approach to Explore the Mechanisms of Artemisiae scopariae Herba for the Treatment of Chronic Hepatitis B
Cited by: 5
Author(s): Asi He, Wei Wang, Xia Yang, Xiaoping Niu
Software Mentions: 1
Published: over 5 years ago

10.3390/biomedicines9080863

CD40 Agonist Monoclonal Antibody-Mediated Hepatitis in TNF-Receptor 1 Gene Knockout Mice
Cited by: 0
Author(s): Oksana Raabe, Thomas Birchler, Hubert Rehrauer, Elisabeth Eppler
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/1248920

System Pharmacology-Based Strategy to Decode the Synergistic Mechanism of GanDouLing for Wilson’s Disease
Cited by: 1
Author(s): Juan Zhang, Hong Chen, Bao Yuan-cheng, Denghui Xie, Weiren Yang, Huaizhou Jiang, Ting Dong, Hui Han
Software Mentions: 1
Published: over 5 years ago

10.1080/21655979.2020.1822714

A new metabolic signature contributes to disease progression and predicts worse survival in melanoma
Cited by: 7
Author(s): Mengdi Wan, Binyu Zhuang, Xiaohui Dai, Liang Zhang, Fangqing Zhao, Yan You
Software Mentions: 1
Published: over 6 years ago

10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.17452

Prognostic value of DNA repair genes based on stratification of glioblastomas
Cited by: 11
Author(s): Kai Sun, Qiwen Duan, Gang Liu, Jing‐Min Lu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-020-07541-6

High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancer
Cited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.19699

RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone <i>in vitro</i>: significance to steroidogenesis
Cited by: 19
Author(s): Guoliang Zhang, Ruiqian Zhang, Xiao‐Feng Sun, Shun‐Feng Cheng, Yufeng Wang, Chuanliang Ji, Yanzhong Feng, Jie Yu, Wei Ge, Yong Zhao, Shiduo Sun, Wei Shen, Lan Li
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pcbi.1008686

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
Cited by: 63
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-00826-0

Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysis
Cited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: over 9 years ago

10.1155/2020/5024942

Identification of an Immune Gene Expression Signature for Predicting Lung Squamous Cell Carcinoma Prognosis
Cited by: 5
Author(s): Yubo Yan, Minghui Zhang, Shanqi Xu
Software Mentions: 1
Published: about 6 years ago

10.18632/aging.202315

CCDC170 affects breast cancer apoptosis through IRE1 pathway
Cited by: 10
Author(s): Qiong Wang, Yanrui Zhao, Hong Zheng, Qinghua Wang, Wei Wang, Ben Liu, Hongwei Han, Lina Zhang, Kexin Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07457-1

Genetically-regulated transcriptomics & copy number variation of proctitis points to altered mitochondrial and DNA repair mechanisms in individuals of European ancestry
Cited by: 5
Author(s): Gita A. Pathak, Renato Polimanti, Talisa Silzer, Frank R. Wendt, Ranajit Chakraborty, Nicole R. Phillips
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00262-020-02688-4

Chemotherapy negatively impacts the tumor immune microenvironment in NSCLC: an analysis of pre- and post-treatment biopsies in the multi-center SAKK19/09 study
Cited by: 7
Author(s): Michael A. Amrein, E D Bührer, Q Li, Sacha I. Rothschild, Carsten Riether, Rolf Jaggi, Spasenija Savic-Prince, Lukas Bubendorf, Oliver Gautschi, Adrian F. Ochsenbein
Software Mentions: 1
Published: about 6 years ago

10.1042/BSR20203565

Uncovering the mechanism of Ge-Gen-Qin-Lian decoction for treating ulcerative colitis based on network pharmacology and molecular docking verification
Cited by: 19
Author(s): Lin Xu, Jiaqi Zhang, Yifan Wang, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.579215

Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic Aneurysm
Cited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/8578615

Exploring the Molecular Mechanism of Astragali Radix-Curcumae Rhizoma against Gastric Intraepithelial Neoplasia by Network Pharmacology and Molecular Docking
Cited by: 2
Author(s): Yuejin Ji, Yajun Liu, Jingyi Hu, Cheng Cheng, Jing Xing, Lei Zhu, Hong Shen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcimb.2021.728415

Difference of Intrahost Dynamics of the Second Human Pegivirus and Hepatitis C Virus in HPgV-2/HCV-Coinfected Patients
Cited by: 4
Author(s): Yuanhao Liang, Fengyu Hu, Hang Fan, Linghua Li, Zhengwei Wan, Haiying Wang, Jingwei Shui, Yuanping Zhou, Yigang Tong, Weiping Cai, Shixing Tang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12935-021-02054-z

Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signaling
Cited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.3820

Construction and validation of an autophagy‐related long noncoding RNA signature for prognosis prediction in kidney renal clear cell carcinoma patients
Cited by: 11
Author(s): Junjie Yu, Weipu Mao, Bin Xu, Ming Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.573501

Development of a Novel Serum Exosomal MicroRNA Nomogram for the Preoperative Prediction of Lymph Node Metastasis in Esophageal Squamous Cell Carcinoma
Cited by: 9
Author(s): Tong Liu, Du Li, Yunshan Wang, Shanyu Gao, Juan Li, Peilong Li, Zhaowei Sun, Helen Binang, Chuanxin Wang
Software Mentions: 1
Published: almost 6 years ago

10.18632/oncotarget.20902

MicroRNAs as predictors for CNS relapse of systemic diffuse large B-cell lymphoma
Cited by: 13
Author(s): Nir Pillar, Osnat Bairey, Neta Goldschmidt, Yakov Fellig, Yevgenia Rosenblat, Itchak Shehtman, Danielle Haguel, Pia Raanani, Noam Shomron, Tali Siegal
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.6668

Transcriptional factor regulation network and competitive endogenous RNA (ceRNA) network determining response of esophageal squamous cell carcinomas to neoadjuvant chemoradiotherapy
Cited by: 4
Author(s): Mingrui Shao, Wenya Li
Software Mentions: 1
Published: over 7 years ago

10.1002/advs.201902926

Targeting Super‐Enhancers via Nanoparticle‐Facilitated BRD4 and CDK7 Inhibitors Synergistically Suppresses Pancreatic Ductal Adenocarcinoma
Cited by: 29
Author(s): Chen‐Song Huang, Xinru You, Chenyang Dai, Qiong‐Cong Xu, Fuxi Li, Li Wang, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Zhuoxing Gao, Jun Wu, Xiaoyu Yin, Wei Zhao
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01348-8

Myostatin regulates fatty acid desaturation and fat deposition through MEF2C/miR222/SCD5 cascade in pigs
Cited by: 20
Author(s): Hongyan Ren, Wei Xiao, Xiangjing Qin, Gangzhi Cai, Hao Chen, Zhen Hua, Cheng Cheng, Xinglei Li, Hua Hsi Wu, Hong‐Wei Xiao, Liping Zhang, Jiali Dai, Xin Zheng, Zhe Zhu, Chong Qian, Jie Yao, Ye Bi
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/7631365

Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin Prescriptions
Cited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12951-021-00810-x

Uterine metabolic disorder induced by silica nanoparticles: biodistribution and bioactivity revealed by labeling with FITC
Cited by: 13
Author(s): Shuyin Duan, Meihua Zhang, Junxia Li, Jiaqi Tian, Haiyan Yin, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.732419

Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle Pregnancy
Cited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12935-021-02183-5

Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma
Cited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2021.697308

Identification of Key Genes Mutations Associated With the Radiosensitivity by Whole Exome Sequencing in Pancreatic Cancer
Cited by: 3
Author(s): Bin Hu, Xiumei Ma, Rongfu Huang, Zheng Wu, Jun Lü, Yuntao Guo, Jianmin Tang, Chunhui Ma, Jun Ma, Lei Zhang, Yongrui Bai
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-018-34334-6

DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohort
Cited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39582-8

Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity Loci
Cited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-021-08517-w

TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinoma
Cited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/8862821

Network Pharmacology and Bioinformatics Methods Reveal the Mechanism of Zao-Jiao-Ci in the Treatment of LSCC
Cited by: 1
Author(s): Feng Xiang, Linman Li, Jieling Lin, Shasha Li, Guiyuan Peng
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2021.680873

Significance of DMBT1 in Papillary Thyroid Carcinoma Concurrent With Hashimoto’s Thyroiditis
Cited by: 2
Author(s): Xiao‐Xiong Gan, Ya-Yi Li, Sijin Li, Shi-Sen Mo, Jianhua Feng, Fei Shen, Wei Cai, Ye-Qian Lai, Bo Xu
Software Mentions: 1
Published: about 5 years ago

10.1111/mpp.12865

Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of <i>Xanthomonas citri</i>
Cited by: 22
Author(s): Yanan Zhang, Doron Teper, Jin Xu, Nian Wang
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.21872

A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapy
Cited by: 5
Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: almost 9 years ago

10.1155/2020/1673486

Identification of Key Genes and Long Noncoding RNA-Associated Competing Endogenous RNA (ceRNA) Networks in Early-Onset Preeclampsia
Cited by: 14
Author(s): Zhan Zhang, Ping Wang, Lin-Lin Zhang, Chenxi Huang, Jun Gao, Yingying Li, Bo Yang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-021-08029-7

The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemia
Cited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-019-1122-z

Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
Cited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11698

LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancer
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: about 5 years ago

10.1155/2021/8057587

Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental Verification
Cited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43924-x

FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformatics
Cited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.00845

Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vanname
Cited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-021-08655-1

Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironment
Cited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: almost 5 years ago

10.3390/curroncol28050305

Comprehensive Proteomic Analysis of Colon Cancer Tissue Revealed the Reason for the Worse Prognosis of Right-Sided Colon Cancer and Mucinous Colon Cancer at the Protein Level
Cited by: 5
Author(s): Yanyu Chen, W Y Hou, Min-Er Zhong, Bin Wu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41413-020-00121-1

Osteoclast-derived apoptotic bodies couple bone resorption and formation in bone remodeling
Cited by: 34
Author(s): Qinyu Ma, Mengmeng Liang, Yutong Wu, Fei Luo, Zaisong Ma, Shiwu Dong, Jiake Xu, Ce Dou
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10061132

Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00674

Predicting Cancer Tissue-of-Origin by a Machine Learning Method Using DNA Somatic Mutation Data
Cited by: 6
Author(s): Xiaojun Liu, Lianxing Li, Lihong Peng, Bo Wang, Jidong Lang, Qingqing Lu, Xizhe Zhang, Yi Sun, Geng Tian, Huajun Zhang, Liqian Zhou
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/3159831

Clinical Significance and Prognostic Value of miR-28-5p in Colon Cancer
Cited by: 4
Author(s): Jilin Li, Kezhi Li, Min Xie, Yanping Tang, Yin-Lin Tang, Bang-li Hu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-54401-w

Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behavior
Cited by: 21
Author(s): Henry Reyes Pineda, Eric J. Devor, Akshaya Warrier, A.M. Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N. Duncan, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11438

Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) development
Cited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.11872

Proteomic analysis reveals some common proteins in the kidney stone matrix
Cited by: 14
Author(s): Yuanyuan Yang, Sen-Yuan Hong, Cong Liu, Jiaqiao Zhang, Henglong Hu, Xiaolong Chen, Kehua Jiang, Fa Sun, Qing Wang, Shaogang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12918-018-0657-8

Network-based logistic regression integration method for biomarker identification
Cited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: over 7 years ago

10.1155/2021/9213205

Circular RNA hsa_circ_0006117 Facilitates Pancreatic Cancer Progression by Regulating the miR-96-5p/KRAS/MAPK Signaling Pathway
Cited by: 4
Author(s): Tao Liu, Lei Zhou, Zhiwei He, Yankun Chen, Xueyi Jiang, Jian Xu, Jianxin Jiang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.701073

Genome Instability-Derived Genes Are Novel Prognostic Biomarkers for Triple-Negative Breast Cancer
Cited by: 6
Author(s): Maoni Guo, San Ming Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-020-01345-1

DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroups
Cited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-5050-x

Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattle
Cited by: 47
Author(s): Zexi Cai, Bernt Guldbrandtsen, Mogens Sandø Lund, Goutam Sahana
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13018-021-02386-6

Overexpression of CRABP2 inhibits dexamethasone-induced apoptosis in human osteoblast cells
Cited by: 4
Author(s): Haiping Zhang, Ziliang Yu, Farui Sun, Jin Jin
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/9303486

Identification of Six Potentially Long Noncoding RNAs as Biomarkers Involved Competitive Endogenous RNA in Clear Cell Renal Cell Carcinoma
Cited by: 24
Author(s): Kang Yang, Xiaofan Lu, Pengfei Luo, Jie Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-61163-3

A Novel Fluorescent Reporter System Identifies Laminin-511/521 as Potent Regulators of Cardiomyocyte Maturation
Cited by: 20
Author(s): Nawin Chanthra, Tomoyuki Abe, Matthew Miyamoto, Kiyotoshi Sekiguchi, Chulan Kwon, Yutaka Hanazono, Hideki Uosaki
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103639

High expression of UNC5B enhances tumor proliferation, increases metastasis, and worsens prognosis in breast cancer
Cited by: 11
Author(s): Shuai Wu, Xinyue Guo, Jiaojiao Zhou, Xuan Zhu, Huihui Chen, Kun Zhang, Yingfeng Lu, Yiding Chen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/3829092

Network Pharmacology Strategy to Investigate the Pharmacological Mechanism of HuangQiXiXin Decoction on Cough Variant Asthma and Evidence-Based Medicine Approach Validation
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Author(s): Qingqing Xia, Mingtao Liu, Hui Li, Lijun Tian, Qi Jia, Yufeng Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
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Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00206

CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
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Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-019-2639-2

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
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Author(s): Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki, Dario Greco
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.591545

PAFAH1B3 Expression Is Correlated With Gastric Cancer Cell Proliferation and Immune Infiltration
Cited by: 8
Author(s): Tianyu Xie, Xin Guo, Di Wu, Shuo Li, Yuhan Lu, Xinxin Wang, Lin Chen
Software Mentions: 1
Published: over 5 years ago

10.1152/jn.00837.2018

Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad
Cited by: 5
Author(s): Thomas J. Vajtay, Akhil Bandi, Aman Upadhyay, Mavis R. Swerdel, Ronald P. Hart, Christian R. Lee, David J. Margolis
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-79086-4

Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysis
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Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88253-0

Gene network and biological pathways associated with susceptibility to differentiated thyroid carcinoma
Cited by: 4
Author(s): Om Kulkarni, Pierre‐Emmanuel Sugier, Julie Guibon, Anne Boland‐Augé, Christine Lonjou, Delphine Bacq‐Daian, Robert Olaso, Carole Rubino, Vincent Souchard, Frédérique Rachédi, Juan J Lence-Anta, Rosa María Bravo Ortiz, Constance Xhaard, Pierre Laurent‐Puig, Claire Mulot, Anne‐Valérie Guizard, Claire Schvartz, Marie‐Christine Boutron‐Ruault, Evgenia Ostroumova, Ausrele Kesminiene, Jean‐François Deleuze, Pascal Guénel, Florent de Vathaire, Thérèse Truong, Fabienne Lesueur
Software Mentions: 1
Published: over 5 years ago

10.31557/APJCP.2021.22.6.1799

Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical Cancer
Cited by: 8
Author(s): Cecile Meneur, Sangavi Eswaran, Divya Adiga, S. Sriharikrishnaa, Nadeem Khan G, Sandeep Mallya, Sanjiban Chakrabarty, Shama Prasada Kabekkodu
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8873371

Evidence of TCM Theory in Treating the Same Disease with Different Methods: Treatment of Pneumonia with Ephedra sinica and Scutellariae Radix as an Example
Cited by: 3
Author(s): Liping Sun, Dandan Wang, Yan Xu, Wenxiu Qi, Han Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13018-021-02598-w

Salidroside promoted osteogenic differentiation of adipose-derived stromal cells through Wnt/β-catenin signaling pathway
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Author(s): Xiaohua Li, Fu-ling Chen, Hong-lin Shen
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.688746

Poria cum Radix Pini Rescues Barium Chloride-Induced Arrhythmia by Regulating the cGMP-PKG Signalling Pathway Involving ADORA1 in Zebrafish
Cited by: 2
Author(s): Ning-Juan Yang, Yanru Liu, Zhishu Tang, Jin‐Ao Duan, Yongmei Yan, Zhong-Xing Song, Ming-Geng Wang, Yuru Zhang, Bai-Jin Chang, Mingwen Zhao, Yan-Ting Zhao
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.01252

Identification and Validation of an Immune-Related RNA Signature to Predict Survival of Patients With Head and Neck Squamous Cell Carcinoma
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Author(s): Shuo Wu, Xinyi Dai, Dielai Xie
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/6472153

Establishment and Evaluation of a 6-Gene Survival Risk Assessment Model Related to Lung Adenocarcinoma Microenvironment
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Author(s): Zhitian Wang, Huiling Xu, Linhai Zhu, Tianyu He, Wang Lv, Zhigang Wu
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.00798

A TCM Formula YYWY Inhibits Tumor Growth in Non-Small Cell Lung Cancer and Enhances Immune-Response Through Facilitating the Maturation of Dendritic Cells
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Author(s): Bei Zhao, Xiaodan Hui, Lijing Jiao, Ling Bi, Lei Wang, Pinbo Huang, Wenxiao Yang, Yinan Yin, Shenyi Jin, Chengyan Wang, Xue Zhang, Ling Xu
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2021.646187

Network Pharmacology for Analyzing the Key Targets and Potential Mechanism of Wogonin in Gliomas
Cited by: 6
Author(s): Zaizhong Wang, Lulu Cheng, Zhigang Shang, Zhihui Li, Yong Zhao, Wenwen Jin, Yingyue Li, Fangchu Su, Xiaobo Mao, Chuanliang Chen, Jianhua Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.650863

Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
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Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2021.622268

Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan–Dou–Fu–Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model
Cited by: 4
Author(s): Taohua Wei, Wenjie Hao, Lulu Tang, Huan Wu, Shi Huang, Yongmei Yang, Nannan Qian, Jie Liu, Weiren Yang, Xianchun Duan
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.644140

The Mechanism of Lavender Essential Oil in the Treatment of Acute Colitis Based on “Quantity–Effect” Weight Coefficient Network Pharmacology
Cited by: 13
Author(s): Yao Wang, Junbo Zou, Yanzhuo Jia, Xiaofei Zhang, Changli Wang, Yajun Shi, Deliang Guo, Zhenfeng Wu, Wang Fang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.618844

How Aconiti Radix Cocta can Treat Gouty Arthritis Based on Systematic Pharmacology and UPLC-QTOF-MS/MS
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Author(s): Xietao Ye, Jinlin Wu, Dayong Zhang, Zelun Lan, Songhong Yang, Jing Zhu, Ming Yang, Qingjie Gong, Lei Zhong
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/2862701

Bioinformatics Analysis of Key Genes and circRNA-miRNA-mRNA Regulatory Network in Gastric Cancer
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Author(s): Yiting Tian, Xing Yang, Zheng Zhang, Rui Peng, Luyu Zhang, Yan Sun
Software Mentions: 1
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10.3389/fphar.2021.594833

Computational and In Vitro Analysis of Plumbagin’s Molecular Mechanism for the Treatment of Hepatocellular Carcinoma
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Author(s): Yanfei Wei, Yu‐Hsuan Lin, Wanjun Chen, Shasha Li, Lei Jin, Delun Huang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.720619

The Downregulation of eIF3a Contributes to Vemurafenib Resistance in Melanoma by Activating ERK via PPP2R1B
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Author(s): Shilong Jiang, Zhi-Bin Wang, Tao Zhu, Ting Jiang, Jiang-Feng Fei, Chong Liu, Chao Luo, Yan Cheng, Zhao‐Qian Liu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-021-03092-5

Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)
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Author(s): Zhiyuan Liu, Hongbing She, Zhaosheng Xu, Helong Zhang, Guoliang Li, Shifan Zhang, Wei Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.532041

Ginsenoside Re Treatment Attenuates Myocardial Hypoxia/Reoxygenation Injury by Inhibiting HIF-1α Ubiquitination
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Author(s): Huiyuan Sun, Shukuan Ling, Di Zhao, Jianwei Li, Yang Li, Hua Qu, Ronghui Du, Ying Zhang, Feng Xu, Yuheng Li, Caizhi Liu, Guangming Zhong, Shuai Liang, Zizhong Liu, Xingcheng Gao, Xiaoyan Jin, Yingxian Li, Donglei Shi
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/9025481

NR3C2-Related Transcriptome Profile and Clinical Outcome in Invasive Breast Carcinoma
Cited by: 5
Author(s): Jianjun Lu, Fang Hu, Yingling Zhou
Software Mentions: 1
Published: over 5 years ago

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