bioconductor: clusterProfiler | Projects

10.1186/s12863-020-00869-9

Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistance
Cited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2021.697308

Identification of Key Genes Mutations Associated With the Radiosensitivity by Whole Exome Sequencing in Pancreatic Cancer
Cited by: 3
Author(s): Bin Hu, Xiumei Ma, Rongfu Huang, Zheng Wu, Jun Lü, Yuntao Guo, Jianmin Tang, Chunhui Ma, Jun Ma, Lei Zhang, Yongrui Bai
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8897879

Network Pharmacology-Based Study on the Mechanism of Gegen Qinlian Decoction against Colorectal Cancer
Cited by: 5
Author(s): Qiaowei Fan, Lin Guo, Jing-Ming Guan, Jing Chen, Yujing Fan, Zhendong Chen, Hulun Li
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12906-020-03026-y

Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius L
Cited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: almost 6 years ago

10.1155/2019/1243743

Network Pharmacology of Yougui Pill Combined with Buzhong Yiqi Decoction for the Treatment of Sexual Dysfunction
Cited by: 16
Author(s): Yangyun Wang, Wandong Yu, Chaoliang Shi, Jiao Wei, Junhong Li, Jianchao Ge, Yang Hong, Guowei Shi
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/1875980

Analysis of the Mechanism of Zhichuanling Oral Liquid in show="" $6#?=""Treating Bronchial Asthma Based on Network Pharmacology
Cited by: 7
Author(s): Wang Rui-yin, Jiangtao Lin
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.680873

Significance of DMBT1 in Papillary Thyroid Carcinoma Concurrent With Hashimoto’s Thyroiditis
Cited by: 2
Author(s): Xiao‐Xiong Gan, Ya-Yi Li, Sijin Li, Shi-Sen Mo, Jianhua Feng, Fei Shen, Wei Cai, Ye-Qian Lai, Bo Xu
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8862228

Expression and Prognostic Analysis of Integrins in Gastric Cancer
Cited by: 7
Author(s): Junfu Wang, Ye Wang, Siwen Zhang, Yeyang Chen, Yue Qiu, Shao-Yi Duan, Bopei Li, Junqiang Chen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/4086864

Identification of the Active Constituents and Significant Pathways of Cangfu Daotan Decoction for the Treatment of PCOS Based on Network Pharmacology
Cited by: 13
Author(s): Wenting Xu, Mengyu Tang, Jiahui Wang, Lihong Wang
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/7049812

Deciphering the Underlying Mechanism of Eucommiae Cortex against Osteoporotic Fracture by Network Pharmacology
Cited by: 6
Author(s): Yongming Shuai, Zhili Jiang, Qiu-Wen Yuan, Shu-Qiang Tu, Fanhui Zeng
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/5510290

Exploring the Pharmacological Mechanism of Duhuo Jisheng Decoction in Treating Osteoporosis Based on Network Pharmacology
Cited by: 14
Author(s): Zhencheng Xiong, Chan Zheng, Yanan Chang, Kuankuan Liu, Shu Li, Chi Zhang
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/4780383

A Network Pharmacology Approach to Explore the Mechanisms of Shugan Jianpi Formula in Liver Fibrosis
Cited by: 6
Author(s): Fan Chang, Fu Rong Wu, Jiafu Zhang, Hui Jiang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.ebiom.2021.103378

Clinical features and prognostic factors in Covid-19: A prospective cohort study
Cited by: 72
Author(s): Sanne de Bruin, Lieuwe D. J. Bos, Marian A. van Roon, Anita M. Tuip-de Boer, Alex R. Schuurman, Marleen J.A. Koel-Simmelinck, Harm Jan Bogaard, Pieter R. Tuinman, Michiel A. van Agtmael, Jörg Hamann, Charlotte E. Teunissen, W. Joost Wiersinga, Aeilko H. Zwinderman, Matthijs C. Brouwer, Diederik van de Beek, Alexander P.J. Vlaar, Anne Geke Algera, Brent Appelman, Frank van Baarle, Diane Bax, Martijn Beudel, Marije Bomers, Peter I. Bonta, Michela Botta, Justin de Brabander, Godelieve de Bree, David T.P. Buis, Marianna Bugiani, Esther Bulle, Osoul Chouchane, Alex Cloherty, Maurits C F J de Rotte, Mirjam Dijkstra, Dave A. Dongelmans, Romein W. G. Dujardin, Paul Elbers, Lucas M. Fleuren, Suzanne E. Geerlings, T.B.H. Geijtenbeek, Armand R.J. Girbes, Abraham Goorhuis, Martin P. Grobusch, Florianne Hafkamp, Laura A. Hagens, Vanessa Harris, Robert Hemke, Sabine Hermans, Leo Heunks, Markus W. Hollmann, Janneke Horn, Joppe W. Hovius, Menno D. de Jong, Rutger Koning, Endry H T Lim, Niels van Mourik, Jeannine Nellen, Esther J. Nossent, Frederique Paulus, Edgar Peters, Dan Piña-Fuentes, Tom van der Poll, Bennedikt Preckel, Jan M. Prins, Jorinde Raasveld, Tom D. Y. Reijnders, Michiel Schinkel, Femke A. P. Schrauwen, Marcus J. Schultz, Alex Schuurmans, Jaap Schuurmans, Kim C.E. Sigaloff, Marleen A. Slim, Patrick Smeele, Marry R. Smit, Cornelis Stijnis, Willemke Stilma, Patrick Thoral, Anissa M. Tsonas, Marc van der Valk, Denise P. Veelo, Carolien Volleman, Heder de Vries, Lonneke A. van Vught, Michèle van Vugt, Dorien Wouters
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07541-6

High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancer
Cited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/3159831

Clinical Significance and Prognostic Value of miR-28-5p in Colon Cancer
Cited by: 4
Author(s): Jilin Li, Kezhi Li, Min Xie, Yanping Tang, Yin-Lin Tang, Bang-li Hu
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/8831948

The Genetic and Epigenetic Mechanisms Involved in Irreversible Pulp Neural Inflammation
Cited by: 7
Author(s): XI Xiao-xi, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xiangqiong Liu, Yupei Deng, Junming Xi, Haitong Pan, Qian Lin, Bo Li, Wanchen Ning, Xiao Jiang, Hanluo Li, Simin Li, Xianda Hu
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6630659

Identification of miRNAs as the Crosstalk in the Interaction between Neural Stem/Progenitor Cells and Endothelial Cells
Cited by: 2
Author(s): Xin Wang, Simin Li, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xianda Hu, Aneesha Acharya, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, Hanluo Li, Sebastian Gaus, Bernd Lethaus, Vuk Savković, Zhi Su
Software Mentions: 1
Published: over 5 years ago

10.3390/curroncol28050305

Comprehensive Proteomic Analysis of Colon Cancer Tissue Revealed the Reason for the Worse Prognosis of Right-Sided Colon Cancer and Mucinous Colon Cancer at the Protein Level
Cited by: 5
Author(s): Yanyu Chen, W Y Hou, Min-Er Zhong, Bin Wu
Software Mentions: 1
Published: almost 5 years ago

10.1155/2020/7103412

Potential Genes Associated with the Survival of Lung Adenocarcinoma Were Identified by Methylation
Cited by: 2
Author(s): Ziyuan Shen, Chenlu He, Haimiao Chen, Lishun Xiao, Yingliang Jin, Shuiping Huang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-020-0918-0

The feather degradation mechanisms of a new Streptomyces sp. isolate SCUT-3
Cited by: 40
Author(s): Zhiwei Li, Shuang Liang, Ke Yao, Jun‐Jin Deng, Ming-Shu Zhang, De‐Lin Lu, Jiazhou Li, Xiao‐Chun Luo
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01348-8

Myostatin regulates fatty acid desaturation and fat deposition through MEF2C/miR222/SCD5 cascade in pigs
Cited by: 20
Author(s): Hongyan Ren, Wei Xiao, Xiangjing Qin, Gangzhi Cai, Hao Chen, Zhen Hua, Cheng Cheng, Xinglei Li, Hua Hsi Wu, Hong‐Wei Xiao, Liping Zhang, Jiali Dai, Xin Zheng, Zhe Zhu, Chong Qian, Jie Yao, Ye Bi
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-019-0453-z

Cardiac interstitial tetraploid cells can escape replicative senescence in rodents but not large mammals
Cited by: 19
Author(s): Kathleen M. Broughton, Tiffany Khieu, Nicky Nguyen, Michael Rosa, Sadia Mohsin, Pearl Quijada, Bingyan Wang, Oscar Echeagaray, Dieter A. Kubli, Taeyong Kim, Fareheh Firouzi, Megan Monsanto, Natalie Gude, Robert Adamson, Walter P. Dembitsky, Michael Davis, Mark A. Sussman
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2021.688746

Poria cum Radix Pini Rescues Barium Chloride-Induced Arrhythmia by Regulating the cGMP-PKG Signalling Pathway Involving ADORA1 in Zebrafish
Cited by: 2
Author(s): Ning-Juan Yang, Yanru Liu, Zhishu Tang, Jin‐Ao Duan, Yongmei Yan, Zhong-Xing Song, Ming-Geng Wang, Yuru Zhang, Bai-Jin Chang, Mingwen Zhao, Yan-Ting Zhao
Software Mentions: 1
Published: about 5 years ago

10.3389/fphar.2020.00798

A TCM Formula YYWY Inhibits Tumor Growth in Non-Small Cell Lung Cancer and Enhances Immune-Response Through Facilitating the Maturation of Dendritic Cells
Cited by: 18
Author(s): Bei Zhao, Xiaodan Hui, Lijing Jiao, Ling Bi, Lei Wang, Pinbo Huang, Wenxiao Yang, Yinan Yin, Shenyi Jin, Chengyan Wang, Xue Zhang, Ling Xu
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2021.646187

Network Pharmacology for Analyzing the Key Targets and Potential Mechanism of Wogonin in Gliomas
Cited by: 6
Author(s): Zaizhong Wang, Lulu Cheng, Zhigang Shang, Zhihui Li, Yong Zhao, Wenwen Jin, Yingyue Li, Fangchu Su, Xiaobo Mao, Chuanliang Chen, Jianhua Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.622268

Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan–Dou–Fu–Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model
Cited by: 4
Author(s): Taohua Wei, Wenjie Hao, Lulu Tang, Huan Wu, Shi Huang, Yongmei Yang, Nannan Qian, Jie Liu, Weiren Yang, Xianchun Duan
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.644140

The Mechanism of Lavender Essential Oil in the Treatment of Acute Colitis Based on “Quantity–Effect” Weight Coefficient Network Pharmacology
Cited by: 13
Author(s): Yao Wang, Junbo Zou, Yanzhuo Jia, Xiaofei Zhang, Changli Wang, Yajun Shi, Deliang Guo, Zhenfeng Wu, Wang Fang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.618844

How Aconiti Radix Cocta can Treat Gouty Arthritis Based on Systematic Pharmacology and UPLC-QTOF-MS/MS
Cited by: 10
Author(s): Xietao Ye, Jinlin Wu, Dayong Zhang, Zelun Lan, Songhong Yang, Jing Zhu, Ming Yang, Qingjie Gong, Lei Zhong
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.594833

Computational and In Vitro Analysis of Plumbagin’s Molecular Mechanism for the Treatment of Hepatocellular Carcinoma
Cited by: 6
Author(s): Yanfei Wei, Yu‐Hsuan Lin, Wanjun Chen, Shasha Li, Lei Jin, Delun Huang
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.720619

The Downregulation of eIF3a Contributes to Vemurafenib Resistance in Melanoma by Activating ERK via PPP2R1B
Cited by: 4
Author(s): Shilong Jiang, Zhi-Bin Wang, Tao Zhu, Ting Jiang, Jiang-Feng Fei, Chong Liu, Chao Luo, Yan Cheng, Zhao‐Qian Liu
Software Mentions: 1
Published: about 5 years ago

10.1186/s13601-020-00347-6

Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa
Cited by: 24
Author(s): Anu Laulajainen‐Hongisto, Annina Lyly, Tanzeela Hanif, Kishor Dhaygude, Matti Kankainen, Risto Renkonen, Kati Donner, Pirkko Mattila, Tuomas Jartti, Jean Bousquet, Paula Kauppi, Sanna Toppila‐Salmi
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2020.532041

Ginsenoside Re Treatment Attenuates Myocardial Hypoxia/Reoxygenation Injury by Inhibiting HIF-1α Ubiquitination
Cited by: 11
Author(s): Huiyuan Sun, Shukuan Ling, Di Zhao, Jianwei Li, Yang Li, Hua Qu, Ronghui Du, Ying Zhang, Feng Xu, Yuheng Li, Caizhi Liu, Guangming Zhong, Shuai Liang, Zizhong Liu, Xingcheng Gao, Xiaoyan Jin, Yingxian Li, Donglei Shi
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-020-07457-1

Genetically-regulated transcriptomics & copy number variation of proctitis points to altered mitochondrial and DNA repair mechanisms in individuals of European ancestry
Cited by: 5
Author(s): Gita A. Pathak, Renato Polimanti, Talisa Silzer, Frank R. Wendt, Ranajit Chakraborty, Nicole R. Phillips
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13148-021-01067-9

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
Cited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08517-w

TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinoma
Cited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08029-7

The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemia
Cited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.713984

Comparative Transcriptomics and Metabolomics Reveal an Intricate Priming Mechanism Involved in PGPR-Mediated Salt Tolerance in Tomato
Cited by: 39
Author(s): Ιfigeneia Mellidou, Aggeliki Ainalidou, Αναστασία Παπαδοπούλου, Kleopatra Leontidou, Savvas Genitsaris, Evangelos Karagiannis, Bram Van de Poel, Katerina Karamanoli
Software Mentions: 1
Published: about 5 years ago

10.1111/cpr.12701

Aconitine induces cardiomyocyte damage by mitigating BNIP3‐dependent mitophagy and the TNFα‐NLRP3 signalling axis
Cited by: 43
Author(s): Peng Fu, Nan Zhang, Chunting Wang, Xiaoyun Wang, Wei Huang, Cheng Peng, Gu He, Bo Han
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2021.643971

Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus Huanglongbing
Cited by: 8
Author(s): Jingwei Duan, Xue Li, Junzhe Zhang, Baoping Cheng, Shuhan Liu, Hongmei Li, Quan Zhou, Wenli Chen
Software Mentions: 1
Published: over 5 years ago

10.1007/s00018-020-03556-1

Updating dual-specificity tyrosine-phosphorylation-regulated kinase 2 (DYRK2): molecular basis, functions and role in diseases
Cited by: 23
Author(s): Alejandro Correa-Sáez, Rafael Jiménez‐Izquierdo, Martín Garrido‐Rodriguez, Rosario Morrugares, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2021.639104

Comparative Phenotypic and Transcriptomic Analysis Reveals Key Responses of Upland Cotton to Salinity Stress During Postgermination
Cited by: 8
Author(s): Jingxia Zhang, Pei Zhang, Xuehan Huo, Yinghui Gao, Yu Chen, Zhangqiang Song, Furong Wang, Jun Zhang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.01311

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models
Cited by: 58
Author(s): Yongsheng Xu, Tiantian Yang, Yao Zhou, Yin Su, Pengcheng Li, Jun Liu, Shaohang Xu, Zefeng Yang, Chenwu Xu
Software Mentions: 1
Published: about 8 years ago

10.22074/cellj.2021.6969

Proteomics Analyses Reveal Functional Differences between Exosomes of Mesenchymal Stem Cells Derived from The Umbilical Cord and Those Derived from The Adipose Tissue.
Cited by: 5
Author(s): Bin Liu, Guanglei Qiao, Wenwu Cao, C Henlu Li, Shaojun Pan, Lirui Wang, Yanlei Liu, Lijun Ma, Daxiang Cui
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/8862821

Network Pharmacology and Bioinformatics Methods Reveal the Mechanism of Zao-Jiao-Ci in the Treatment of LSCC
Cited by: 1
Author(s): Feng Xiang, Linman Li, Jieling Lin, Shasha Li, Guiyuan Peng
Software Mentions: 1
Published: about 5 years ago

10.1186/s12983-021-00387-z

Population genomics reveal rapid genetic differentiation in a recently invasive population of Rattus norvegicus
Cited by: 7
Author(s): Yi Chen, Lei Zhao, Huajing Teng, Cheng-Min Shi, Quansheng Liu, Jianxu Zhang, Yaohua Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-021-08655-1

Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironment
Cited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: about 5 years ago

10.22074/cellj.2020.6561

Gene Expression Microarray Data Meta-Analysis Identifies Candidate Genes and Molecular Mechanism Associated with Clear Cell Renal Cell Carcinoma.
Cited by: 6
Author(s): Ying Wang, Haibin Wei, Lijian Song, Lu Xu, Jingyao Bao, Jiang Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41421-020-00194-6

Dysfunction of dimorphic sperm impairs male fertility in the silkworm
Cited by: 23
Author(s): Shuqing Chen, Yujia Liu, Yang Xu, Zulian Liu, Xun Luo, Jun Xu, Yongping Huang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41421-020-0182-y

An in vivo strategy for knockdown of circular RNAs
Cited by: 24
Author(s): Nagarjuna Reddy Pamudurti, Inés Lucía Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastián Kadener
Software Mentions: 1
Published: about 6 years ago

10.1155/2021/9213205

Circular RNA hsa_circ_0006117 Facilitates Pancreatic Cancer Progression by Regulating the miR-96-5p/KRAS/MAPK Signaling Pathway
Cited by: 4
Author(s): Tao Liu, Lei Zhou, Zhiwei He, Yankun Chen, Xueyi Jiang, Jian Xu, Jianxin Jiang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-020-02757-7

Circular RNA circCTNNA1 promotes colorectal cancer progression by sponging miR-149-5p and regulating FOXM1 expression
Cited by: 36
Author(s): Pengju Chen, Yunfeng Yao, Nan Yang, Li-Hua Gong, Yuanyuan Kong, Aiwen Wu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-019-1537-x

Cancer testis antigen 55 deficiency attenuates colitis-associated colorectal cancer by inhibiting NF-κB signaling
Cited by: 8
Author(s): Huan Zhao, Wen-Ming Pan, Huihui Zhang, Yang Song, Jie Chen, Ying Xiang, Bingxin Gu, Shangze Li, Runlei Du, Xiaodong Zhang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-020-02752-y

WFDC2 suppresses prostate cancer metastasis by modulating EGFR signaling inactivation
Cited by: 23
Author(s): Yaoyi Xiong, Lushun Yuan, Song Chen, Huimin Xu, Tianchen Peng, Lingao Ju, Gang Wang, Yu Xiao, Xinghuan Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers12040801

Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor Cells
Cited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11101225

Systems Level Analysis and Identification of Pathways and Key Genes Associated with Delirium
Cited by: 5
Author(s): Yukiko Takahashi, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13102369

MicroRNAs Deregulated in Intraductal Papillary Mucinous Neoplasm Converge on Actin Cytoskeleton-Related Pathways That Are Maintained in Pancreatic Ductal Adenocarcinoma
Cited by: 0
Author(s): Elena Fernandez-Castañer, María Vila-Casadesús, Elena Vila-Navarro, Carolina Parra, Juan José Lozano, Antoni Castells, Meritxell Gironella
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13061239

The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem Cells
Cited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13092195

Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 Interactions
Cited by: 0
Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11111724

Coupled Genome-Wide DNA Methylation and Transcription Analysis Identified Rich Biomarkers and Drug Targets in Triple-Negative Breast Cancer
Cited by: 7
Author(s): Maoni Guo, Siddharth Sinha, San Ming Wang
Software Mentions: 1
Published: almost 7 years ago

10.3390/cancers12123667

Common and Unique Transcription Signatures of YAP and TAZ in Gastric Cancer Cells
Cited by: 9
Author(s): Yaelim Lee, Megan Finch-Edmondson, Hamizah Ahmad Cognart, Bowen Zhu, Haiwei Song, Boon Chuan Low, Marius Sudol
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0178549

Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis
Cited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-020-02239-1

Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape
Cited by: 42
Author(s): Jiantao Guan, Yaoguang Xu, Yan Yu, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang, Jianhua Wei, Hua Xie
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gpb.2019.05.004

The Biological Significance of Multi-copy Regions and Their Impact on Variant Discovery
Cited by: 0
Author(s): Jing Sun, Yanfang Zhang, Minhui Wang, Qian Guan, Xiujia Yang, Jin Xia Ou, Mingchen Yan, Chengrui Wang, Yan Zhang, Zhi-Hao Li, Chunhong Lan, Mao Chen, Hongwei Zhou, Bingtao Hao, Zhenhai Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1008686

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
Cited by: 63
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10061132

Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.11368

Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data mining
Cited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.11698

LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancer
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.13379

Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palate
Cited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12859-019-2639-2

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
Cited by: 28
Author(s): Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki, Dario Greco
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.11438

Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) development
Cited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.17452

Prognostic value of DNA repair genes based on stratification of glioblastomas
Cited by: 11
Author(s): Kai Sun, Qiwen Duan, Gang Liu, Jing‐Min Lu
Software Mentions: 1
Published: over 9 years ago

10.1172/jci.insight.144863

IGF1R controls mechanosignaling in myofibroblasts required for pulmonary alveologenesis
Cited by: 12
Author(s): Hua He, John Snowball, Fei Sun, Cheng-Lun Na, Jeffrey A. Whitsett
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.8380

Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma
Cited by: 4
Author(s): Minhua Rong, Zhan-Hui Zhu, Ying Guan, Meiwei Li, Jiashuo Zheng, Yue-qi Huang, Dan‐Ming Wei, Yingmei Li, Ximei Wu, Hui-ping Bu, Hui-liu Peng, Xiaolin Wei, Guosheng Li, Mingxuan Li, Ming‐Hui Chen, Su-Hua Huang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8357

Identification of key genes associated with multiple sclerosis based on gene expression data from peripheral blood mononuclear cells
Cited by: 11
Author(s): Zhenwei Shang, Wenjing Sun, Mingming Zhang, Lei Xu, Xueyuan Jia, Ruijie Zhang, Songbin Fu
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.19699

RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone <i>in vitro</i>: significance to steroidogenesis
Cited by: 19
Author(s): Guoliang Zhang, Ruiqian Zhang, Xiao‐Feng Sun, Shun‐Feng Cheng, Yufeng Wang, Chuanliang Ji, Yanzhong Feng, Jie Yu, Wei Ge, Yong Zhao, Shiduo Sun, Wei Shen, Lan Li
Software Mentions: 1
Published: about 9 years ago

10.1186/s40104-019-0326-9

Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing
Cited by: 15
Author(s): Yuebo Zhang, Longchao Zhang, Jin Yue, Wei Xia, Ligang Wang, Xin Liu, Hongmei Gao, Xinhua Hou, Fuping Zhao, Hua Yan, Lixian Wang
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.20902

MicroRNAs as predictors for CNS relapse of systemic diffuse large B-cell lymphoma
Cited by: 13
Author(s): Nir Pillar, Osnat Bairey, Neta Goldschmidt, Yakov Fellig, Yevgenia Rosenblat, Itchak Shehtman, Danielle Haguel, Pia Raanani, Noam Shomron, Tali Siegal
Software Mentions: 1
Published: almost 9 years ago

10.1007/s10815-016-0745-x

Differentially expressed genes in preimplantation human embryos: potential candidate genes for blastocyst formation and implantation
Cited by: 13
Author(s): Erika Munch, Amy E.T. Sparks, Jesús González Bosquet, Lane K. Christenson, Eric J. Devor, Bradley J. Van Voorhis
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.11872

Proteomic analysis reveals some common proteins in the kidney stone matrix
Cited by: 14
Author(s): Yuanyuan Yang, Sen-Yuan Hong, Cong Liu, Jiaqiao Zhang, Henglong Hu, Xiaolong Chen, Kehua Jiang, Fa Sun, Qing Wang, Shaogang Wang
Software Mentions: 1
Published: about 5 years ago

10.7150/jca.33737

Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: over 6 years ago

10.7150/jca.39328

Effect of CELSR3 on the Cell Cycle and Apoptosis of Hepatocellular Carcinoma Cells
Cited by: 8
Author(s): Zucheng Xie, Yi‐Wu Dang, Huayu Wu, Rong‐Quan He, Jie Ma, Zhigang Peng, Minhua Rong, Zhekun Li, Jiapeng Yang, Yizhao Jiang, Gang Chen, Lihua Yang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6668

Transcriptional factor regulation network and competitive endogenous RNA (ceRNA) network determining response of esophageal squamous cell carcinomas to neoadjuvant chemoradiotherapy
Cited by: 4
Author(s): Mingrui Shao, Wenya Li
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.12116

LncRNAs specifically overexpressed in endocervical adenocarcinoma are associated with an unfavorable recurrence prognosis and the immune response
Cited by: 1
Author(s): Yong Song, Long Nie, Yuting Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1111/mpp.12865

Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of <i>Xanthomonas citri</i>
Cited by: 22
Author(s): Yanan Zhang, Doron Teper, Jin Xu, Nian Wang
Software Mentions: 1
Published: almost 7 years ago

10.7150/jca.50370

Increased IGFBP7 Expression Correlates with Poor Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 13
Author(s): Zhao Qi, Rulin Zhao, Conghua Song, Huan Wang, Jianfang Rong, Fangfei Wang, Lili Yan, Yanping Song, Yong Xie
Software Mentions: 1
Published: over 5 years ago

10.1186/s10020-020-00153-7

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line
Cited by: 6
Author(s): Manuela Mengozzi, Andrew Hesketh, Giselda Bucca, Pietro Ghezzi, Colin P. Smith
Software Mentions: 1
Published: over 6 years ago

10.7150/jca.48661

Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosis
Cited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.21872

A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapy
Cited by: 5
Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules23123346

Drug Repurposing for Japanese Encephalitis Virus Infection by Systems Biology Methods
Cited by: 16
Author(s): Bo-Min Lv, Xili Tong, Quan Yuan, Meng‐Yuan Liu, Qingye Zhang, Yinglin Song, Hongyu Zhang
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules26092830

Comprehensive Analysis of Transcriptome and Metabolome Reveals the Flavonoid Metabolic Pathway Is Associated with Fruit Peel Coloration of Melon
Cited by: 24
Author(s): Aiai Zhang, Jing Zheng, Xuemiao Chen, Xueyin Shi, Huaisong Wang, Qihua Fu
Software Mentions: 1
Published: over 5 years ago

10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12943-021-01369-9

KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1
Cited by: 35
Author(s): Lei Liu, Jianfeng Cui, Yajing Zhao, Xiaochen Liu, Lipeng Chen, Yangyang Xia, Yong Wang, Shouzhen Chen, Song Sun, Benkang Shi, Yongxin Zou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-019-1122-z

Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
Cited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.14758

Proteomics of epicardial adipose tissue in patients with heart failure
Cited by: 23
Author(s): Lei Zhao, Zongsheng Guo, Pan Wang, Meimei Zheng, Xiaoyan Yang, Ye Liu, Zheng Ma, Mulei Chen, Xinchun Yang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12943-019-0996-0

Genome-wide identification of cancer-specific alternative splicing in circRNA
Cited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 7 years ago

10.1186/s12943-020-01279-2

circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathway
Cited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: almost 6 years ago

10.1111/jcmm.15390

p75NTR optimizes the osteogenic potential of human periodontal ligament stem cells by up‐regulating α1 integrin expression
Cited by: 3
Author(s): Jun Li, Manzhu Zhao, Yingying Wang, Ming Shen, Shuai Wang, Mengying Tang, Meng Li, Yuting Luo, Kun Yang, Xiang Wen
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.15230

Magnesium isoglycyrrhizinate prevents the nonalcoholic hepatic steatosis via regulating energy homeostasis
Cited by: 13
Author(s): Wenkai Jiang, Shiyu Xu, Huijie Guo, Li Lu, Jie Liu, Guangji Wang, Kun Hao
Software Mentions: 1
Published: over 6 years ago

10.31557/APJCP.2021.22.6.1799

Analysis of Nuclear Encoded Mitochondrial Gene Networks in Cervical Cancer
Cited by: 8
Author(s): Cecile Meneur, Sangavi Eswaran, Divya Adiga, S. Sriharikrishnaa, Nadeem Khan G, Sandeep Mallya, Sanjiban Chakrabarty, Shama Prasada Kabekkodu
Software Mentions: 1
Published: over 5 years ago

10.1097/MD.0000000000025452

Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinoma
Cited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 5 years ago

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Papers Mentioning clusterProfiler 2,223