bioconductor: clusterProfiler | Projects

10.1186/s12935-021-02183-5

Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma
Cited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12935-020-01345-1

DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroups
Cited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12935-021-02054-z

Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signaling
Cited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.657950

ATP2C2 Has Potential to Define Tumor Microenvironment in Breast Cancer
Cited by: 9
Author(s): Jiazhou Liu, Yu Wei, Yushen Wu, Jie Li, Jiazheng Sun, Guosheng Ren, Hongzhong Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2021.728415

Difference of Intrahost Dynamics of the Second Human Pegivirus and Hepatitis C Virus in HPgV-2/HCV-Coinfected Patients
Cited by: 4
Author(s): Yuanhao Liang, Fengyu Hu, Hang Fan, Linghua Li, Zhengwei Wan, Haiying Wang, Jingwei Shui, Yuanping Zhou, Yigang Tong, Weiping Cai, Shixing Tang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-021-08517-w

TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinoma
Cited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08029-7

The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemia
Cited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.16737

The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ <i>ATG2/ATG7/ATG16</i> axis
Cited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: about 5 years ago

10.1186/s12935-018-0712-y

Analysis of PD-1 related immune transcriptional profile in different cancer types
Cited by: 14
Author(s): Jun Shang, Qian Song, Zaixing Yang, Xiaoyan Sun, Meijuan Xue, Wenjie Chen, Jingcheng Yang, Sihua Wang
Software Mentions: 1
Published: over 7 years ago

10.1155/2019/5894926

Identification and Validation of Core Genes Involved in the Development of Papillary Thyroid Carcinoma via Bioinformatics Analysis
Cited by: 6
Author(s): Xiaoyan Li, Jing He, Mingxia Zhou, Yun Cao, Yonglong Jin, Qiang Zou
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.655284

HN-CNN: A Heterogeneous Network Based on Convolutional Neural Network for m7 G Site Disease Association Prediction
Cited by: 7
Author(s): Lin Zhang, Jin Chen, Jiani Ma, Hui Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.521004

Identification and Validation of Potential Pathogenic Genes and Prognostic Markers in ESCC by Integrated Bioinformatics Analysis
Cited by: 10
Author(s): Lu Tang, Yuqiao Chen, Ping Xiong, Yuan Zhou, Hong Jiang, Wei Guo, Wei Zhuang
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm8010073

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Cited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.103912

Free Wanderer Powder regulates AMPA receptor homeostasis in chronic restraint stress-induced rat model of depression with liver-depression and spleen-deficiency syndrome
Cited by: 8
Author(s): Shengyan Xi, Guang-Xin Yue, Yueyun Liu, Yanan Wang, Ying-Kun Qiu, Zhigeng Li, Pei Ma, Tiegang Liu, You-Ming Jiang, Yuan Liang, Qun Liu, Jing Shi, Jiaxu Chen, Lifeng Yue
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.11438

Identification and expression pattern analysis of miRNAs in pectoral muscle during pigeon (Columba livia) development
Cited by: 0
Author(s): Xun Wang, Ping Yan, Siyuan Feng, Yi Luo, Jinqian Liang, Ling Zhao, Haifeng Liu, Qianzi Tang, Keren Long, Long Jin, Jideng Ma, Anan Jiang, Surong Shuai, Mingzhou Li
Software Mentions: 1
Published: about 5 years ago

10.1007/s00262-020-02688-4

Chemotherapy negatively impacts the tumor immune microenvironment in NSCLC: an analysis of pre- and post-treatment biopsies in the multi-center SAKK19/09 study
Cited by: 7
Author(s): Michael A. Amrein, E D Bührer, Q Li, Sacha I. Rothschild, Carsten Riether, Rolf Jaggi, Spasenija Savic-Prince, Lukas Bubendorf, Oliver Gautschi, Adrian F. Ochsenbein
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2021.650863

Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
Cited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.00206

CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
Cited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.3820

Construction and validation of an autophagy‐related long noncoding RNA signature for prognosis prediction in kidney renal clear cell carcinoma patients
Cited by: 11
Author(s): Junjie Yu, Weipu Mao, Bin Xu, Ming Chen
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/3829092

Network Pharmacology Strategy to Investigate the Pharmacological Mechanism of HuangQiXiXin Decoction on Cough Variant Asthma and Evidence-Based Medicine Approach Validation
Cited by: 7
Author(s): Qingqing Xia, Mingtao Liu, Hui Li, Lijun Tian, Qi Jia, Yufeng Zhang
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.11698

LncRNA AC007255.1, an immune-related prognostic enhancer RNA in esophageal cancer
Cited by: 6
Author(s): Qingqing Wang, Xiaoyan Yu, Ningning Yang, Xu Lu, Youwen Zhou
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08655-1

Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironment
Cited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.11368

Expression and gene regulation network of TYMS and BCL2L1 in colorectal cancer based on data mining
Cited by: 3
Author(s): Yanghua Jie, Xin Yang, Weidong Chen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0178549

Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis
Cited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2019.00845

Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vanname
Cited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.732419

Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle Pregnancy
Cited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers12040801

Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor Cells
Cited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.579215

Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic Aneurysm
Cited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ebiom.2021.103378

Clinical features and prognostic factors in Covid-19: A prospective cohort study
Cited by: 72
Author(s): Sanne de Bruin, Lieuwe D. J. Bos, Marian A. van Roon, Anita M. Tuip-de Boer, Alex R. Schuurman, Marleen J.A. Koel-Simmelinck, Harm Jan Bogaard, Pieter R. Tuinman, Michiel A. van Agtmael, Jörg Hamann, Charlotte E. Teunissen, W. Joost Wiersinga, Aeilko H. Zwinderman, Matthijs C. Brouwer, Diederik van de Beek, Alexander P.J. Vlaar, Anne Geke Algera, Brent Appelman, Frank van Baarle, Diane Bax, Martijn Beudel, Marije Bomers, Peter I. Bonta, Michela Botta, Justin de Brabander, Godelieve de Bree, David T.P. Buis, Marianna Bugiani, Esther Bulle, Osoul Chouchane, Alex Cloherty, Maurits C F J de Rotte, Mirjam Dijkstra, Dave A. Dongelmans, Romein W. G. Dujardin, Paul Elbers, Lucas M. Fleuren, Suzanne E. Geerlings, T.B.H. Geijtenbeek, Armand R.J. Girbes, Abraham Goorhuis, Martin P. Grobusch, Florianne Hafkamp, Laura A. Hagens, Vanessa Harris, Robert Hemke, Sabine Hermans, Leo Heunks, Markus W. Hollmann, Janneke Horn, Joppe W. Hovius, Menno D. de Jong, Rutger Koning, Endry H T Lim, Niels van Mourik, Jeannine Nellen, Esther J. Nossent, Frederique Paulus, Edgar Peters, Dan Piña-Fuentes, Tom van der Poll, Bennedikt Preckel, Jan M. Prins, Jorinde Raasveld, Tom D. Y. Reijnders, Michiel Schinkel, Femke A. P. Schrauwen, Marcus J. Schultz, Alex Schuurmans, Jaap Schuurmans, Kim C.E. Sigaloff, Marleen A. Slim, Patrick Smeele, Marry R. Smit, Cornelis Stijnis, Willemke Stilma, Patrick Thoral, Anissa M. Tsonas, Marc van der Valk, Denise P. Veelo, Carolien Volleman, Heder de Vries, Lonneke A. van Vught, Michèle van Vugt, Dorien Wouters
Software Mentions: 1
Published: over 5 years ago

10.1152/ajpcell.00540.2019

Comparative profiling of skeletal muscle models reveals heterogeneity of transcriptome and metabolism
Cited by: 81
Author(s): Ahmed M. Abdelmoez, Laura Puig, Jonathon A. B. Smith, Brendan M. Gabriel, Mladen Savikj, Lucile Dollet, Alexander V. Chibalin, Anna Krook, Juleen R. Zierath, Nicolas Pillon
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/4237285

FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes
Cited by: 9
Author(s): Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shuzhen Guo
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-020-01594-x

Intra-articular delivery of extracellular vesicles secreted by chondrogenic progenitor cells from MRL/MpJ superhealer mice enhances articular cartilage repair in a mouse injury model
Cited by: 45
Author(s): Rikang Wang, Wei Jiang, Lang Zhang, Sai‐Sai Xie, Shuai Zhang, Shenfang Yuan, Yi Jin, Guangqian Zhou
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.638366

Decoding the Mechanism of Huanglian Jiedu Decoction in Treating Pneumonia Based on Network Pharmacology and Molecular Docking
Cited by: 26
Author(s): Xianhai Li, Hua Tang, Qiang Tang, Wei Chen
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000648

CDKL3 promotes osteosarcoma progression by activating Akt/PKB
Cited by: 6
Author(s): Aina He, Lanjing Ma, Yujing Huang, Haijiao Zhang, Wei Duan, Zexu Li, Fei Teng, Junqing Yuan, Hao Wu, Liguo Liu, Yuqiang Bai, Wentao Dai, Yonggang Wang, Hongtao Li, Yong Sun, Yaling Wang, Chunyan Wang, Ting Yuan, Qingcheng Yang, Songhai Tian, Min Dong, Ren Sheng, Dongxi Xiang
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13061239

The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem Cells
Cited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 5 years ago

10.1007/s00018-020-03556-1

Updating dual-specificity tyrosine-phosphorylation-regulated kinase 2 (DYRK2): molecular basis, functions and role in diseases
Cited by: 23
Author(s): Alejandro Correa-Sáez, Rafael Jiménez‐Izquierdo, Martín Garrido‐Rodriguez, Rosario Morrugares, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 1
Published: about 6 years ago

10.1111/cpr.12701

Aconitine induces cardiomyocyte damage by mitigating BNIP3‐dependent mitophagy and the TNFα‐NLRP3 signalling axis
Cited by: 43
Author(s): Peng Fu, Nan Zhang, Chunting Wang, Xiaoyun Wang, Wei Huang, Cheng Peng, Gu He, Bo Han
Software Mentions: 1
Published: almost 7 years ago

10.1002/jev2.12054

Highly efficient magnetic labelling allows MRI tracking of the homing of stem cell‐derived extracellular vesicles following systemic delivery
Cited by: 32
Author(s): Han Zheng, Senquan Liu, Yigang Pei, Zheng Ding, Yuguo Li, Xinge Wang, Daqian Zhan, Shuli Xia, Tom A.P. Driedonks, Kenneth W. Witwer, Robert G. Weiss, Peter C.M. van Zijl, Jeff W.M. Bulte, Linzhao Cheng, Guanshu Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-019-2639-2

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments
Cited by: 28
Author(s): Giovanni Scala, Angela Serra, Veer Singh Marwah, Laura Aliisa Saarimäki, Dario Greco
Software Mentions: 1
Published: over 7 years ago

10.1186/s13287-020-02114-7

Donor heart preservation with hypoxic-conditioned medium-derived from bone marrow mesenchymal stem cells improves cardiac function in a heart transplantation model
Cited by: 10
Author(s): Pengyu Zhou, Hao Líu, Ximao Liu, Langtao Xiao, Zezhou Xiao, Peng Zhu, Yujie Zhu, Jun Lu, Shaoyi Zheng
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.637781

Abnormal Glucose Metabolism in Male Mice Offspring Conceived by in vitro Fertilization and Frozen-Thawed Embryo Transfer
Cited by: 15
Author(s): Ning-Xin Qin, Zhiyang Zhou, Wenlong Zhao, Kexin Zou, Weihui Shi, Chuanjin Yu, Xia Liu, Ze-Han Dong, Yiting Mao, Xinmei Liu, Jian‐Zhong Sheng, Guo-Hui Ding, Yanting Wu, He‐Feng Huang
Software Mentions: 1
Published: over 5 years ago

10.22074/cellj.2021.6969

Proteomics Analyses Reveal Functional Differences between Exosomes of Mesenchymal Stem Cells Derived from The Umbilical Cord and Those Derived from The Adipose Tissue.
Cited by: 5
Author(s): Bin Liu, Guanglei Qiao, Wenwu Cao, C Henlu Li, Shaojun Pan, Lirui Wang, Yanlei Liu, Lijun Ma, Daxiang Cui
Software Mentions: 1
Published: over 5 years ago

10.22074/cellj.2020.6561

Gene Expression Microarray Data Meta-Analysis Identifies Candidate Genes and Molecular Mechanism Associated with Clear Cell Renal Cell Carcinoma.
Cited by: 6
Author(s): Ying Wang, Haibin Wei, Lijian Song, Lu Xu, Jingyao Bao, Jiang Liu
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.anireprosci.2020.106621

RNA-Seq analysis reveals functionally relevant coding and non-coding RNAs in crossbred bull spermatozoa
Cited by: 14
Author(s): M. Arul Prakash, A. Kumaresan, Manish Kumar Sinha, K. Elango, Tushar Kumar Mohanty, Tirtha Kumar Datta, Jane M. Morrell
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41421-020-00194-6

Dysfunction of dimorphic sperm impairs male fertility in the silkworm
Cited by: 23
Author(s): Shuqing Chen, Yujia Liu, Yang Xu, Zulian Liu, Xun Luo, Jun Xu, Yongping Huang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41398-020-00984-2

An epigenome-wide association study of early-onset major depression in monozygotic twins
Cited by: 28
Author(s): Roxann Roberson‐Nay, Dana M. Lapato, Aaron R. Wolen, Eva Lancaster, Bradley T. Webb, Bradley Verhulst, John M. Hettema, Timothy P. York
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41421-020-0182-y

An in vivo strategy for knockdown of circular RNAs
Cited by: 24
Author(s): Nagarjuna Reddy Pamudurti, Inés Lucía Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastián Kadener
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13287-021-02317-6

Curcumin-primed human BMSC-derived extracellular vesicles reverse IL-1β-induced catabolic responses of OA chondrocytes by upregulating miR-126-3p
Cited by: 42
Author(s): Shushan Li, Sabine Stöckl, Christoph Lukas, Marietta Herrmann, Christoph Brochhausen, Matthias König, Brian Johnstone, Susanne Grässel
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.655885

Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.
Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.625977

A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network Analysis
Cited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/8057587

Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental Verification
Cited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/foods10030625

Transcriptomic and Metabolomic Basis of Short- and Long-Term Post-Harvest UV-C Application in Regulating Grape Berry Quality Development
Cited by: 11
Author(s): Kekun Zhang, Wanping Li, Young‐Tae Ju, Xianhang Wang, Xiangyu Sun, Yulin Fang, Keqin Chen
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11061639

Mediterranean Pine Vole, Microtus duodecimcostatus: A Paradigm of an Opportunistic Breeder
Cited by: 5
Author(s): Miguel Lao-Pérez, Diaa Massoud, Francisca M. Real, Alicia Hurtado, Esperanza Ortega, Miguel Burgos, Rafael Jiménez, Francisco Barrionuevo
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/6272073

Exploring Pharmacological Mechanisms of Xiang Ju Tablets in the Treatment of Allergic Rhinitis via a Network Pharmacology Approach
Cited by: 6
Author(s): Ke Hu, Xi Duan, Li zhu Han, Hong ye Ju, Bin Wang, Zhi Tang, Xiao Song
Software Mentions: 1
Published: almost 7 years ago

10.1097/MD.0000000000025452

Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinoma
Cited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/7631365

Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin Prescriptions
Cited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/8578615

Exploring the Molecular Mechanism of Astragali Radix-Curcumae Rhizoma against Gastric Intraepithelial Neoplasia by Network Pharmacology and Molecular Docking
Cited by: 2
Author(s): Yuejin Ji, Yajun Liu, Jingyi Hu, Cheng Cheng, Jing Xing, Lei Zhu, Hong Shen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2020.00674

Predicting Cancer Tissue-of-Origin by a Machine Learning Method Using DNA Somatic Mutation Data
Cited by: 6
Author(s): Xiaojun Liu, Lianxing Li, Lihong Peng, Bo Wang, Jidong Lang, Qingqing Lu, Xizhe Zhang, Yi Sun, Geng Tian, Huajun Zhang, Liqian Zhou
Software Mentions: 1
Published: about 6 years ago

10.3390/plants10061132

Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: about 5 years ago

10.1186/s13046-018-0970-5

Dysregulation of miR-6868-5p/FOXM1 circuit contributes to colorectal cancer angiogenesis
Cited by: 19
Author(s): Ye Wang, WU Mei-juan, Zengjie Lei, Mengxi Huang, Zhiping Li, Liya Wang, Qijun Cao, Dong Cho Han, Yue Chang, Yanyan Chen, Fei Liu, Lijun Xue, Xiaobei Mao, Jiao Geng, Yanan Chen, Tingting Dai, Lili Ren, Qin Wang, Hong-Ju Yu, Cheng Chen, Xiaoyuan Chen
Software Mentions: 1
Published: over 7 years ago

10.7150/ijbs.39779

Therapeutic Targeting of CDK7 Suppresses Tumor Progression in Intrahepatic Cholangiocarcinoma
Cited by: 11
Author(s): Huadong Chen, Chen‐Song Huang, Qiong‐Cong Xu, Fuxi Li, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Wei Zhao, Xiaoyu Yin
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.622424

Network and Pathway-Based Integrated Analysis Identified a Novel “rs28457673–miR-15/16/195/424/497 Family–IGF1R–MAPK Signaling Pathway” Axis Associated With Post-stroke Depression
Cited by: 5
Author(s): Yan Li, Zhichao Wang, Mingxi Zhu, Gui-Bo Fan, Gao-Shuo Xu, Tianyang Zhao, A-Yang Zhao, Shangwei Ning, Shijie Qi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-020-01279-2

circPARD3 drives malignant progression and chemoresistance of laryngeal squamous cell carcinoma by inhibiting autophagy through the PRKCI-Akt-mTOR pathway
Cited by: 86
Author(s): Wei Gao, Huina Guo, Min Niu, Xian Zheng, Yuliang Zhang, Xuting Xue, Yunfeng Bo, Xiaoya Guan, Zhongxun Li, Yujia Guo, Long He, Yu Zhang, Li Li, Ji‐Min Cao, Yongyan Wu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.25165

Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left-right organizer
Cited by: 23
Author(s): Bárbara Tavares, Raquel Jacinto, Pedro Sampaio, Sara Pestana, Andreia Pinto, Andreia Vaz, Mónica Roxo-Rosa, Rui Gardner, Telma Lopes, Britta Schilling, Ian Henry, Leonor Saúde, Susana S. Lopes
Software Mentions: 1
Published: almost 9 years ago

10.18632/aging.103826

Comprehensive analysis of TGF-&#x3B2;-induced mRNAs and ncRNAs in hepatocellular carcinoma
Cited by: 8
Author(s): Jintai Liang, Jinli Liao, Tongtong Liu, Yu Wang, Jingyuan Wen, Ning Cai, Zhao Hu, Weiqi Xu, Ganxun Li, Zeyang Ding, Bixiang Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2021.713984

Comparative Transcriptomics and Metabolomics Reveal an Intricate Priming Mechanism Involved in PGPR-Mediated Salt Tolerance in Tomato
Cited by: 39
Author(s): Ιfigeneia Mellidou, Aggeliki Ainalidou, Αναστασία Παπαδοπούλου, Kleopatra Leontidou, Savvas Genitsaris, Evangelos Karagiannis, Bram Van de Poel, Katerina Karamanoli
Software Mentions: 1
Published: almost 5 years ago

10.1080/21623945.2021.1908655

MiR-33a plays a crucial role in the proliferation of bovine preadipocytes
Cited by: 8
Author(s): Wenzhen Zhang, Li Wang, Sayed Haidar Abbas Raza, Xiaoyu Wang, Guohu Wang, Chengcheng Liang, Gong Chen, Bingzhi Li, Linsen Zan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.631187

A Study of the Regulatory Mechanism of the CB1/PPARγ2/PLIN1/HSL Pathway for Fat Metabolism in Cattle
Cited by: 8
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.643971

Cocktail Therapy of Fosthiazate and Cupric-Ammoniun Complex for Citrus Huanglongbing
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Author(s): Jingwei Duan, Xue Li, Junzhe Zhang, Baoping Cheng, Shuhan Liu, Hongmei Li, Quan Zhou, Wenli Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12943-019-0996-0

Genome-wide identification of cancer-specific alternative splicing in circRNA
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Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.639104

Comparative Phenotypic and Transcriptomic Analysis Reveals Key Responses of Upland Cotton to Salinity Stress During Postgermination
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Author(s): Jingxia Zhang, Pei Zhang, Xuehan Huo, Yinghui Gao, Yu Chen, Zhangqiang Song, Furong Wang, Jun Zhang
Software Mentions: 1
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10.1080/21655979.2020.1822714

A new metabolic signature contributes to disease progression and predicts worse survival in melanoma
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Author(s): Mengdi Wan, Binyu Zhuang, Xiaohui Dai, Liang Zhang, Fangqing Zhao, Yan You
Software Mentions: 1
Published: over 6 years ago

10.1186/s12943-019-1122-z

Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
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Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2018.01311

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models
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Author(s): Yongsheng Xu, Tiantian Yang, Yao Zhou, Yin Su, Pengcheng Li, Jun Liu, Shaohang Xu, Zefeng Yang, Chenwu Xu
Software Mentions: 1
Published: almost 8 years ago

10.3390/foods10071451

Transcriptome Characterization and Expression Profiles of Disease Defense-Related Genes of Table Grapes in Response to Pichia anomala Induced with Chitosan
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Author(s): Wenjing Hu, Esa Abiso Godana, Meiqiu Xu, Qiya Yang, Solairaj Dhanasekaran, Hongyin Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13148-021-01067-9

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
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Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.056564

The transcriptional landscape of the cultured murine middle ear epithelium in vitro
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Author(s): Apoorva Mulay, Miraj Kobad Chowdhury, Cameron James, Lynne Bingle, Colin D. Bingle
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13092195

Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 Interactions
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Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.532041

Ginsenoside Re Treatment Attenuates Myocardial Hypoxia/Reoxygenation Injury by Inhibiting HIF-1α Ubiquitination
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Author(s): Huiyuan Sun, Shukuan Ling, Di Zhao, Jianwei Li, Yang Li, Hua Qu, Ronghui Du, Ying Zhang, Feng Xu, Yuheng Li, Caizhi Liu, Guangming Zhong, Shuai Liang, Zizhong Liu, Xingcheng Gao, Xiaoyan Jin, Yingxian Li, Donglei Shi
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12983-021-00387-z

Population genomics reveal rapid genetic differentiation in a recently invasive population of Rattus norvegicus
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Author(s): Yi Chen, Lei Zhao, Huajing Teng, Cheng-Min Shi, Quansheng Liu, Jianxu Zhang, Yaohua Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11111724

Coupled Genome-Wide DNA Methylation and Transcription Analysis Identified Rich Biomarkers and Drug Targets in Triple-Negative Breast Cancer
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Author(s): Maoni Guo, Siddharth Sinha, San Ming Wang
Software Mentions: 1
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10.3389/fphar.2021.720619

The Downregulation of eIF3a Contributes to Vemurafenib Resistance in Melanoma by Activating ERK via PPP2R1B
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Author(s): Shilong Jiang, Zhi-Bin Wang, Tao Zhu, Ting Jiang, Jiang-Feng Fei, Chong Liu, Chao Luo, Yan Cheng, Zhao‐Qian Liu
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41419-020-02757-7

Circular RNA circCTNNA1 promotes colorectal cancer progression by sponging miR-149-5p and regulating FOXM1 expression
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Author(s): Pengju Chen, Yunfeng Yao, Nan Yang, Li-Hua Gong, Yuanyuan Kong, Aiwen Wu
Software Mentions: 1
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10.3389/fphar.2021.594833

Computational and In Vitro Analysis of Plumbagin’s Molecular Mechanism for the Treatment of Hepatocellular Carcinoma
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Author(s): Yanfei Wei, Yu‐Hsuan Lin, Wanjun Chen, Shasha Li, Lei Jin, Delun Huang
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.52695

Tgfβ signaling is critical for maintenance of the tendon cell fate
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Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103639

High expression of UNC5B enhances tumor proliferation, increases metastasis, and worsens prognosis in breast cancer
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Author(s): Shuai Wu, Xinyue Guo, Jiaojiao Zhou, Xuan Zhu, Huihui Chen, Kun Zhang, Yingfeng Lu, Yiding Chen
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10.1186/s12943-021-01369-9

KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1
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Software Mentions: 1
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10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
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Software Mentions: 1
Published: almost 7 years ago

10.3389/fphar.2021.618844

How Aconiti Radix Cocta can Treat Gouty Arthritis Based on Systematic Pharmacology and UPLC-QTOF-MS/MS
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Author(s): Xietao Ye, Jinlin Wu, Dayong Zhang, Zelun Lan, Songhong Yang, Jing Zhu, Ming Yang, Qingjie Gong, Lei Zhong
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008686

SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
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Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: over 5 years ago

10.1186/s13040-020-00225-8

Therapeutic mechanism of Toujie Quwen granules in COVID-19 based on network pharmacology
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Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules26092830

Comprehensive Analysis of Transcriptome and Metabolome Reveals the Flavonoid Metabolic Pathway Is Associated with Fruit Peel Coloration of Melon
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Author(s): Aiai Zhang, Jing Zheng, Xuemiao Chen, Xueyin Shi, Huaisong Wang, Qihua Fu
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.644140

The Mechanism of Lavender Essential Oil in the Treatment of Acute Colitis Based on “Quantity–Effect” Weight Coefficient Network Pharmacology
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Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.622268

Comprehensive RNA-Seq Analysis of Potential Therapeutic Targets of Gan–Dou–Fu–Mu Decoction for Treatment of Wilson Disease Using a Toxic Milk Mouse Model
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Author(s): Taohua Wei, Wenjie Hao, Lulu Tang, Huan Wu, Shi Huang, Yongmei Yang, Nannan Qian, Jie Liu, Weiren Yang, Xianchun Duan
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Published: over 5 years ago

10.1186/s13601-020-00347-6

Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa
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Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/6657658

Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative Stress
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Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: almost 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223