Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: clusterProfiler

https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler

A universal enrichment tool for interpreting omics data
2 versions
Latest release: about 1 year ago
53 dependent packages
1,189,928 downloads total

Papers Mentioning clusterProfiler 2,223

10.1155/2019/4237285
FibroAtlas: A Database for the Exploration of Fibrotic Diseases and Their Genes
Cited by: 9
Author(s): Jinying Liu, Dezhi Sun, Jiale Liu, Hao Xu, Yuan Liu, Yang Li, Lihong Diao, Xun Wang, Dan Wang, Lei Tian, Huimin Zhang, Zhongyang Liu, Weiquan Ren, Fuchu He, Dong Li, Shuzhen Guo
Software Mentions: 1
Published: almost 5 years ago
10.3389/fimmu.2020.603507
MAFB and MAF Transcription Factors as Macrophage Checkpoints for COVID-19 Severity
Cited by: 16
Author(s): Miguel A. Vega, Miriam Simón-Fuentes, Arturo González de la Aleja, Concha Nieto, Marı́a Colmenares, Cristina Herrero, Ángeles Domínguez-Soto, Ángel L. Corbí
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2021.708747
The Spleen as a Target to Characterize Immunomodulatory Effects of Down-Stream Processed Cyberlindnera jadinii Yeasts in Atlantic Salmon Exposed to a Dietary Soybean Meal Challenge
Cited by: 8
Author(s): Byron Morales‐Lange, Jeleel Opeyemi Agboola, Jon Øvrum Hansen, Leidy Lagos, Ove Øyås, Luís Mercado, Liv Torunn Mydland, Margareth Øverland
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-021-02183-5
Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma
Cited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: about 3 years ago
10.1155/2019/5894926
Identification and Validation of Core Genes Involved in the Development of Papillary Thyroid Carcinoma via Bioinformatics Analysis
Cited by: 6
Author(s): Xiaoyan Li, Jing He, Mingxia Zhou, Yun Cao, Yonglong Jin, Qiang Zou
Software Mentions: 1
Published: about 5 years ago
10.3390/cancers13102369
MicroRNAs Deregulated in Intraductal Papillary Mucinous Neoplasm Converge on Actin Cytoskeleton-Related Pathways That Are Maintained in Pancreatic Ductal Adenocarcinoma
Cited by: 0
Author(s): Elena Fernandez-Castañer, María Vila-Casadesús, Elena Vila-Navarro, Carolina Parra, Juan José Lozano, Antoni Castells, Meritxell Gironella
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.614773
Comprehensive Transcriptomic Analysis Reveals the Role of the Immune Checkpoint HLA-G Molecule in Cancers
Cited by: 8
Author(s): Huihui Xu, Jing Gan, Dan-Ping Xu, Lü Li, Wei‐Hua Yan
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.103912
Free Wanderer Powder regulates AMPA receptor homeostasis in chronic restraint stress-induced rat model of depression with liver-depression and spleen-deficiency syndrome
Cited by: 8
Author(s): Shengyan Xi, Guang-Xin Yue, Yueyun Liu, Yanan Wang, Ying-Kun Qiu, Zhigeng Li, Pei Ma, Tiegang Liu, You-Ming Jiang, Yuan Liang, Qun Liu, Jing Shi, Jiaxu Chen, Lifeng Yue
Software Mentions: 1
Published: about 4 years ago
10.3389/fimmu.2021.657950
ATP2C2 Has Potential to Define Tumor Microenvironment in Breast Cancer
Cited by: 9
Author(s): Jiazhou Liu, Yu Wei, Yushen Wu, Jie Li, Jiazheng Sun, Guosheng Ren, Hongzhong Li
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/2862701
Bioinformatics Analysis of Key Genes and circRNA-miRNA-mRNA Regulatory Network in Gastric Cancer
Cited by: 20
Author(s): Yiting Tian, Xing Yang, Zheng Zhang, Rui Peng, Luyu Zhang, Yan Sun
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2021.655284
HN-CNN: A Heterogeneous Network Based on Convolutional Neural Network for m7 G Site Disease Association Prediction
Cited by: 7
Author(s): Lin Zhang, Jin Chen, Jiani Ma, Hui Liu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-020-01345-1
DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroups
Cited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2020.521004
Identification and Validation of Potential Pathogenic Genes and Prognostic Markers in ESCC by Integrated Bioinformatics Analysis
Cited by: 10
Author(s): Lu Tang, Yuqiao Chen, Ping Xiong, Yuan Zhou, Hong Jiang, Wei Guo, Wei Zhuang
Software Mentions: 1
Published: almost 4 years ago
10.1155/2020/6472153
Establishment and Evaluation of a 6-Gene Survival Risk Assessment Model Related to Lung Adenocarcinoma Microenvironment
Cited by: 14
Author(s): Zhitian Wang, Huiling Xu, Linhai Zhu, Tianyu He, Wang Lv, Zhigang Wu
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/9025481
NR3C2-Related Transcriptome Profile and Clinical Outcome in Invasive Breast Carcinoma
Cited by: 5
Author(s): Jianjun Lu, Fang Hu, Yingling Zhou
Software Mentions: 1
Published: almost 4 years ago
10.3390/curroncol28050305
Comprehensive Proteomic Analysis of Colon Cancer Tissue Revealed the Reason for the Worse Prognosis of Right-Sided Colon Cancer and Mucinous Colon Cancer at the Protein Level
Cited by: 5
Author(s): Yanyu Chen, W Y Hou, Min-Er Zhong, Bin Wu
Software Mentions: 1
Published: about 3 years ago
10.3389/fgene.2021.650863
Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
Cited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00206
CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
Cited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 4 years ago
10.3389/fgene.2021.679150
Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: over 3 years ago
10.1136/jitc-2020-001180
Regulation of tumor growth by leukocyte-specific protein 1 in T cells
Cited by: 6
Author(s): Riri Kwon, Bong-Ki Hong, Kang-Gu Lee, Eunbyeol Choi, Laurent Sabbagh, Chul-Soo Cho, Naeun Lee, Wan‐Uk Kim
Software Mentions: 1
Published: about 4 years ago
10.1155/2021/6611018
A Network Pharmacology to Explore the Mechanism of Calculus Bovis in the Treatment of Ischemic Stroke
Cited by: 8
Author(s): Fangchen Liu, Ling Li, Jian Chen, Ying Wu, Yongbing Cao, Ping Zhong
Software Mentions: 1
Published: over 3 years ago
10.1186/s13018-021-02386-6
Overexpression of CRABP2 inhibits dexamethasone-induced apoptosis in human osteoblast cells
Cited by: 4
Author(s): Haiping Zhang, Ziliang Yu, Farui Sun, Jin Jin
Software Mentions: 1
Published: over 3 years ago
10.1155/2021/6439975
Development and Validation of a TNF Family-Based Signature for Predicting Prognosis, Tumor Immune Characteristics, and Immunotherapy Response in Colorectal Cancer Patients
Cited by: 10
Author(s): Xiao Zheng, Kechao Nie, Tong Han, Lin Cheng, Zheyu Zhang, Weijun Peng, Dazun Shi
Software Mentions: 1
Published: about 3 years ago
10.1186/s13018-021-02598-w
Salidroside promoted osteogenic differentiation of adipose-derived stromal cells through Wnt/β-catenin signaling pathway
Cited by: 4
Author(s): Xiaohua Li, Fu-ling Chen, Hong-lin Shen
Software Mentions: 1
Published: over 3 years ago
10.3390/plants10061132
Genome-Wide Differential Methylation Profiles from Two Terpene-Rich Medicinal Plant Extracts Administered in Osteoarthritis Rats
Cited by: 4
Author(s): Younhee Shin, Sathiyamoorthy Subramaniyam, Jin-Mi Chun, Jihyeon Jeon, Jiman Hong, Hojin Jung, Boseok Seong, Kim Byung Chul
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2019.00845
Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vanname
Cited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: about 5 years ago
10.1155/2020/7103412
Potential Genes Associated with the Survival of Lung Adenocarcinoma Were Identified by Methylation
Cited by: 2
Author(s): Ziyuan Shen, Chenlu He, Haimiao Chen, Lishun Xiao, Yingliang Jin, Shuiping Huang
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2021.732419
Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle Pregnancy
Cited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: about 3 years ago
10.1186/s12995-021-00308-0
Serum levels of miR-21-5p and miR-339-5p associate with occupational trichloroethylene hypersensitivity syndrome
Cited by: 4
Author(s): Wei Liu, Jian Zheng, Xiaohu Ren, Yuxuan Xie, Dafeng Lin, Peimao Li, Yuan Lv, Maggie Pui Man Hoi, Yanfang Zhang, Jianjun Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.579215
Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic Aneurysm
Cited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41388-020-01512-8
LncRNA SNHG11 facilitates tumor metastasis by interacting with and stabilizing HIF-1α
Cited by: 55
Author(s): Linguo Xu, Lin Huan, Tong Guo, Yangjun Wu, Yanfang Liu, Qifeng Wang, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: about 4 years ago
10.1152/jn.00837.2018
Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad
Cited by: 5
Author(s): Thomas J. Vajtay, Akhil Bandi, Aman Upadhyay, Mavis R. Swerdel, Ronald P. Hart, Christian R. Lee, David J. Margolis
Software Mentions: 1
Published: over 5 years ago
10.1186/s12935-021-02054-z
Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signaling
Cited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/1673486
Identification of Key Genes and Long Noncoding RNA-Associated Competing Endogenous RNA (ceRNA) Networks in Early-Onset Preeclampsia
Cited by: 14
Author(s): Zhan Zhang, Ping Wang, Lin-Lin Zhang, Chenxi Huang, Jun Gao, Yingying Li, Bo Yang
Software Mentions: 1
Published: over 4 years ago
10.1155/2018/9303486
Identification of Six Potentially Long Noncoding RNAs as Biomarkers Involved Competitive Endogenous RNA in Clear Cell Renal Cell Carcinoma
Cited by: 24
Author(s): Kang Yang, Xiaofan Lu, Pengfei Luo, Jie Zhang
Software Mentions: 1
Published: about 6 years ago
10.18632/aging.103826
Comprehensive analysis of TGF-β-induced mRNAs and ncRNAs in hepatocellular carcinoma
Cited by: 8
Author(s): Jintai Liang, Jinli Liao, Tongtong Liu, Yu Wang, Jingyuan Wen, Ning Cai, Zhao Hu, Weiqi Xu, Ganxun Li, Zeyang Ding, Bixiang Zhang
Software Mentions: 1
Published: about 4 years ago
10.7554/eLife.25165
Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left-right organizer
Cited by: 23
Author(s): Bárbara Tavares, Raquel Jacinto, Pedro Sampaio, Sara Pestana, Andreia Pinto, Andreia Vaz, Mónica Roxo-Rosa, Rui Gardner, Telma Lopes, Britta Schilling, Ian Henry, Leonor Saúde, Susana S. Lopes
Software Mentions: 1
Published: about 7 years ago
10.3390/cancers11111724
Coupled Genome-Wide DNA Methylation and Transcription Analysis Identified Rich Biomarkers and Drug Targets in Triple-Negative Breast Cancer
Cited by: 7
Author(s): Maoni Guo, Siddharth Sinha, San Ming Wang
Software Mentions: 1
Published: about 5 years ago
10.7554/eLife.52695
Tgfβ signaling is critical for maintenance of the tendon cell fate
Cited by: 55
Author(s): Guak Kim Tan, Brian A. Pryce, Anna Stabio, John V. Brigande, Chaojie Wang, Zheng Xia, Sara F. Tufa, Douglas R. Keene, Ronen Schweitzer
Software Mentions: 1
Published: almost 5 years ago
10.1038/s42003-020-0918-0
The feather degradation mechanisms of a new Streptomyces sp. isolate SCUT-3
Cited by: 40
Author(s): Zhiwei Li, Shuang Liang, Ke Yao, Jun‐Jin Deng, Ming-Shu Zhang, De‐Lin Lu, Jiazhou Li, Xiao‐Chun Luo
Software Mentions: 1
Published: over 4 years ago
10.3390/jpm11070649
Identification of Therapeutic Targets for the Selective Killing of HBV-Positive Hepatocytes
Cited by: 0
Author(s): Chien Jung Huang, Lily Wang, Yu Chao Wang
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.655885
Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.
Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.625977
A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network Analysis
Cited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: almost 4 years ago
10.1002/advs.201902926
Targeting Super‐Enhancers via Nanoparticle‐Facilitated BRD4 and CDK7 Inhibitors Synergistically Suppresses Pancreatic Ductal Adenocarcinoma
Cited by: 29
Author(s): Chen‐Song Huang, Xinru You, Chenyang Dai, Qiong‐Cong Xu, Fuxi Li, Li Wang, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Zhuoxing Gao, Jun Wu, Xiaoyu Yin, Wei Zhao
Software Mentions: 1
Published: almost 5 years ago
10.3390/cancers12123667
Common and Unique Transcription Signatures of YAP and TAZ in Gastric Cancer Cells
Cited by: 9
Author(s): Yaelim Lee, Megan Finch-Edmondson, Hamizah Ahmad Cognart, Bowen Zhu, Haiwei Song, Boon Chuan Low, Marius Sudol
Software Mentions: 1
Published: almost 4 years ago
10.18632/aging.103639
High expression of UNC5B enhances tumor proliferation, increases metastasis, and worsens prognosis in breast cancer
Cited by: 11
Author(s): Shuai Wu, Xinyue Guo, Jiaojiao Zhou, Xuan Zhu, Huihui Chen, Kun Zhang, Yingfeng Lu, Yiding Chen
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2020.00674
Predicting Cancer Tissue-of-Origin by a Machine Learning Method Using DNA Somatic Mutation Data
Cited by: 6
Author(s): Xiaojun Liu, Lianxing Li, Lihong Peng, Bo Wang, Jidong Lang, Qingqing Lu, Xizhe Zhang, Yi Sun, Geng Tian, Huajun Zhang, Liqian Zhou
Software Mentions: 1
Published: over 4 years ago
10.1038/s42003-020-01348-8
Myostatin regulates fatty acid desaturation and fat deposition through MEF2C/miR222/SCD5 cascade in pigs
Cited by: 20
Author(s): Hongyan Ren, Wei Xiao, Xiangjing Qin, Gangzhi Cai, Hao Chen, Zhen Hua, Cheng Cheng, Xinglei Li, Hua Hsi Wu, Hong‐Wei Xiao, Liping Zhang, Jiali Dai, Xin Zheng, Zhe Zhu, Chong Qian, Jie Yao, Ye Bi
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0178549
Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis
Cited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: over 7 years ago
10.1155/2021/6685929
Proteomic Profiling Reveals the Molecular Changes of Insomnia Patients
Cited by: 2
Author(s): Guanying Wang, Xiaojuan Ren, Xingping Zhang, Qingquan Wang, Tao Liu, Ning Deng, Di Yan
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12951-021-00810-x
Uterine metabolic disorder induced by silica nanoparticles: biodistribution and bioactivity revealed by labeling with FITC
Cited by: 13
Author(s): Shuyin Duan, Meihua Zhang, Junxia Li, Jiaqi Tian, Haiyan Yin, Xietong Wang, Lin Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.631187
A Study of the Regulatory Mechanism of the CB1/PPARγ2/PLIN1/HSL Pathway for Fat Metabolism in Cattle
Cited by: 8
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/5024942
Identification of an Immune Gene Expression Signature for Predicting Lung Squamous Cell Carcinoma Prognosis
Cited by: 5
Author(s): Yubo Yan, Minghui Zhang, Shanqi Xu
Software Mentions: 1
Published: over 4 years ago
10.18632/aging.103715
Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
Cited by: 9
Author(s): Baoai Han, Xiuping Yang, Davood K Hosseini, Pan Luo, Mengzhi Liu, Xiaoxiang Xu, Ya Zhang, Hongguo Su, Tao Zhou, Haiying Sun, Xiong Chen
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2019.00908
Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
Cited by: 6
Author(s): Dongmei Wu, Zhengkun Zhou, Shao‐Hua Fan, Zihui Zheng, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Xi Hong, Yuxin Zheng
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2019.00305
Transcriptome Analysis Revealed a Highly Connected Gene Module Associated With Cirrhosis to Hepatocellular Carcinoma Development
Cited by: 25
Author(s): Shan Shan, Wei Chen, Jidong Jia
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pcbi.1008686
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19
Cited by: 63
Author(s): Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2019.00396
Integrative Analysis of DiseaseLand Omics Database for Disease Signatures and Treatments: A Bipolar Case Study
Cited by: 7
Author(s): Wang Chun, Bevan Emma Huang, Guang Chen, Timothy W. Lovenberg, David Pocalyko, Xiang Yao
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/1984690
Identification of Diagnostic CpG Signatures in Patients with Gestational Diabetes Mellitus via Epigenome-Wide Association Study Integrated with Machine Learning
Cited by: 2
Author(s): Yan Liu, Hui Geng, Bide Duan, Xiangdong Yang, Anlun Ma, Xiaoyan Ding
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2021.596794
Identifying Breast Cancer-Related Genes Based on a Novel Computational Framework Involving KEGG Pathways and PPI Network Modularity
Cited by: 13
Author(s): Yan Zhang, Xu Ju, Liang Tang, Jianming Li, Qingqing Lu, Geng Tian, Binsheng He, Jialiang Yang
Software Mentions: 1
Published: over 3 years ago
10.3390/cancers13061239
The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem Cells
Cited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22179395
The Regulatory Network of Sturgeon Chondroitin Sulfate on Colorectal Cancer Inhibition by Transcriptomic and Proteomic Analysis
Cited by: 1
Author(s): Rongqian Wu, Qian Shen, Guangyue Li, Pinglan Li, Nan Shang
Software Mentions: 1
Published: about 3 years ago
10.1155/2020/8765461
Identification of a Novel Eight-lncRNA Prognostic Signature for HBV-HCC and Analysis of Their Functions Based on Coexpression and ceRNA Networks
Cited by: 18
Author(s): Xiaonan Zhao, Zhan-Tao Bai, Chenghua Li, Chuanlun Sheng, Hongyan Li
Software Mentions: 1
Published: over 4 years ago
10.1111/mpp.12865
Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of <i>Xanthomonas citri</i>
Cited by: 22
Author(s): Yanan Zhang, Doron Teper, Jin Xu, Nian Wang
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2018.00425
Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to Uveitis
Cited by: 6
Author(s): Shiheng Lu, Ke Zhao, Xuefei Wang, Hui Liu, Xiamuxiya Ainiwaer, Yixin Xu, Min Ye
Software Mentions: 1
Published: about 6 years ago
10.1186/s10020-020-00153-7
Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line
Cited by: 6
Author(s): Manuela Mengozzi, Andrew Hesketh, Giselda Bucca, Pietro Ghezzi, Colin P. Smith
Software Mentions: 1
Published: over 4 years ago
10.1038/s42003-019-0453-z
Cardiac interstitial tetraploid cells can escape replicative senescence in rodents but not large mammals
Cited by: 19
Author(s): Kathleen M. Broughton, Tiffany Khieu, Nicky Nguyen, Michael Rosa, Sadia Mohsin, Pearl Quijada, Bingyan Wang, Oscar Echeagaray, Dieter A. Kubli, Taeyong Kim, Fareheh Firouzi, Megan Monsanto, Natalie Gude, Robert Adamson, Walter P. Dembitsky, Michael Davis, Mark A. Sussman
Software Mentions: 1
Published: over 5 years ago
10.1186/s13601-020-00347-6
Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa
Cited by: 24
Author(s): Anu Laulajainen‐Hongisto, Annina Lyly, Tanzeela Hanif, Kishor Dhaygude, Matti Kankainen, Risto Renkonen, Kati Donner, Pirkko Mattila, Tuomas Jartti, Jean Bousquet, Paula Kauppi, Sanna Toppila‐Salmi
Software Mentions: 1
Published: about 4 years ago
10.1155/2020/7532514
Leptin Overexpression as a Poor Prognostic Factor for Colorectal Cancer
Cited by: 7
Author(s): Chunxiang Li, Jichuan Quan, Ran Wei, Zhixun Zhao, Xu Guan, Liduan Zheng, Shuangmei Zou, Xishan Wang, Zheng Jiang
Software Mentions: 1
Published: over 4 years ago
10.1186/s13148-021-01067-9
Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
Cited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00419
Cryopreservation Induces Alterations of miRNA and mRNA Fragment Profiles of Bull Sperm
Cited by: 17
Author(s): Aishao Shangguan, Hao Zhou, Wei Sun, Rui Ding, Xihe Li, Jiajia Li, Yang Zhou, Xing Chen, Fengling Ding, Liguo Yang, Shujun Zhang
Software Mentions: 1
Published: over 4 years ago
10.1155/2020/2015648
Identification of ATP8B1 as a Tumor Suppressor Gene for Colorectal Cancer and Its Involvement in Phospholipid Homeostasis
Cited by: 7
Author(s): Li Deng, Gengming Niu, Jun Ren, Chongwei Ke
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2019.01252
Identification and Validation of an Immune-Related RNA Signature to Predict Survival of Patients With Head and Neck Squamous Cell Carcinoma
Cited by: 11
Author(s): Shuo Wu, Xinyi Dai, Dielai Xie
Software Mentions: 1
Published: almost 5 years ago
10.3390/molecules23123346
Drug Repurposing for Japanese Encephalitis Virus Infection by Systems Biology Methods
Cited by: 16
Author(s): Bo-Min Lv, Xili Tong, Quan Yuan, Meng‐Yuan Liu, Qingye Zhang, Yinglin Song, Hongyu Zhang
Software Mentions: 1
Published: almost 6 years ago
10.3390/molecules26092830
Comprehensive Analysis of Transcriptome and Metabolome Reveals the Flavonoid Metabolic Pathway Is Associated with Fruit Peel Coloration of Melon
Cited by: 24
Author(s): Aiai Zhang, Jing Zheng, Xuemiao Chen, Xueyin Shi, Huaisong Wang, Qihua Fu
Software Mentions: 1
Published: over 3 years ago
10.1128/MCB.00063-19
Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.202685
Downregulation of FPN1 acts as a prognostic biomarker associated with immune infiltration in lung cancer
Cited by: 9
Author(s): Bing Liu, Zhen Song, Yumei Fan, Guangyu Zhang, Pengxiu Cao, Danyu Li, Xiaopeng Liu, Yan‐Zhong Chang, Karsoon Tan
Software Mentions: 1
Published: over 3 years ago
10.1186/s12935-018-0712-y
Analysis of PD-1 related immune transcriptional profile in different cancer types
Cited by: 14
Author(s): Jun Shang, Qian Song, Zaixing Yang, Xiaoyan Sun, Meijuan Xue, Wenjie Chen, Jingcheng Yang, Sihua Wang
Software Mentions: 1
Published: almost 6 years ago
10.1111/cpr.12701
Aconitine induces cardiomyocyte damage by mitigating BNIP3‐dependent mitophagy and the TNFα‐NLRP3 signalling axis
Cited by: 43
Author(s): Peng Fu, Nan Zhang, Chunting Wang, Xiaoyun Wang, Wei Huang, Cheng Peng, Gu He, Bo Han
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms22158089
Long-Term Fluoxetine Administration Causes Substantial Lipidome Alteration of the Juvenile Macaque Brain
Cited by: 8
Author(s): Anna Tkachev, Elena Stekolshchikova, Daniil Bobrovskiy, Nickolay Anikanov, Polina A Ogurtsova, Dong Ik Park, Anja K.E. Horn, Daria Petrova, Ekaterina Khrameeva, Mari S. Golub, Christoph W. Turck, Philipp Khaitovich
Software Mentions: 1
Published: over 3 years ago
10.1155/2020/6971503
Network Pharmacology Approach to Uncover the Mechanism Governing the Effect of Simiao Powder on Knee Osteoarthritis
Cited by: 17
Author(s): Zhengquan Huang, Xianglin Shi, Xiaochen Li, Li Zhang, Peng Wu, Jun J. Mao, Runlin Xing, Nongshan Zhang, Peimin Wang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fgene.2021.719312
Serum Exosomal Circular RNA Expression Profile and Regulative Role in Proliferative Diabetic Retinopathy
Cited by: 14
Author(s): Xinsheng Li, Jingfan Wang, Huiming Qian, Yan Wang, Zhengyu Zhang, Zizhong Hu, Ping Xie
Software Mentions: 1
Published: over 3 years ago
10.3390/biomedicines8100398
Abundance of Non-Polarized Lung Macrophages with Poor Phagocytic Function in Chronic Obstructive Pulmonary Disease (COPD)
Cited by: 10
Author(s): Kentaro Akata, Kei Yamasaki, Fernando Sergio Leitão Filho, Chen Yang, Hiroto Takiguchi, Başak Şahin, Beth A. Whalen, Yang Cheng, Janice M. Leung, Don D. Sin, Stephanus Frederick Van Eeden
Software Mentions: 1
Published: about 4 years ago
10.3389/fendo.2019.00877
Di (2-ethylhexyl) Phthalate Exposure Impairs the microRNAs Expression Profile During Primordial Follicle Assembly
Cited by: 7
Author(s): Jiaona Zhang, Ruiqian Zhang, Jing-Cai Liu, Lan Li, Wei Shen, Xiaowen Sun
Software Mentions: 1
Published: almost 5 years ago
10.3390/biomedicines9080863
CD40 Agonist Monoclonal Antibody-Mediated Hepatitis in TNF-Receptor 1 Gene Knockout Mice
Cited by: 0
Author(s): Oksana Raabe, Thomas Birchler, Hubert Rehrauer, Elisabeth Eppler
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2021.728415
Difference of Intrahost Dynamics of the Second Human Pegivirus and Hepatitis C Virus in HPgV-2/HCV-Coinfected Patients
Cited by: 4
Author(s): Yuanhao Liang, Fengyu Hu, Hang Fan, Linghua Li, Zhengwei Wan, Haiying Wang, Jingwei Shui, Yuanping Zhou, Yigang Tong, Weiping Cai, Shixing Tang
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2021.638366
Decoding the Mechanism of Huanglian Jiedu Decoction in Treating Pneumonia Based on Network Pharmacology and Molecular Docking
Cited by: 26
Author(s): Xianhai Li, Hua Tang, Qiang Tang, Wei Chen
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12943-021-01369-9
KDM6A-ARHGDIB axis blocks metastasis of bladder cancer by inhibiting Rac1
Cited by: 35
Author(s): Lei Liu, Jianfeng Cui, Yajing Zhao, Xiaochen Liu, Lipeng Chen, Yangyang Xia, Yong Wang, Shouzhen Chen, Song Sun, Benkang Shi, Yongxin Zou
Software Mentions: 1
Published: over 3 years ago
10.1186/s12943-019-1122-z
Hypoxia induced LUCAT1/PTBP1 axis modulates cancer cell viability and chemotherapy response
Cited by: 83
Author(s): Lin Huan, Tong Guo, Yangjun Wu, Linguo Xu, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20202929
FOXD1 is a prognostic biomarker and correlated with macrophages infiltration in head and neck squamous cell carcinoma
Cited by: 3
Author(s): Huazhen Liang, Chunning Zhang, Chaoming Li, Changguo Li, Yanli Wang, Hua Lin
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.12116
LncRNAs specifically overexpressed in endocervical adenocarcinoma are associated with an unfavorable recurrence prognosis and the immune response
Cited by: 1
Author(s): Yong Song, Long Nie, Yuting Zhang
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.6668
Transcriptional factor regulation network and competitive endogenous RNA (ceRNA) network determining response of esophageal squamous cell carcinomas to neoadjuvant chemoradiotherapy
Cited by: 4
Author(s): Mingrui Shao, Wenya Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fcell.2021.637781
Abnormal Glucose Metabolism in Male Mice Offspring Conceived by in vitro Fertilization and Frozen-Thawed Embryo Transfer
Cited by: 15
Author(s): Ning-Xin Qin, Zhiyang Zhou, Wenlong Zhao, Kexin Zou, Weihui Shi, Chuanjin Yu, Xia Liu, Ze-Han Dong, Yiting Mao, Xinmei Liu, Jian‐Zhong Sheng, Guo-Hui Ding, Yanting Wu, He‐Feng Huang
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms22095051
Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)
Cited by: 0
Author(s): Li Tian, Chen Xu, Jinzhi Xu, Jian Luo, Bin Yu, Xianzhi Meng, Chunfeng Li, Guoqing Pan, Zeyang Zhou
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.11872
Proteomic analysis reveals some common proteins in the kidney stone matrix
Cited by: 14
Author(s): Yuanyuan Yang, Sen-Yuan Hong, Cong Liu, Jiaqiao Zhang, Henglong Hu, Xiaolong Chen, Kehua Jiang, Fa Sun, Qing Wang, Shaogang Wang
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.8357
Identification of key genes associated with multiple sclerosis based on gene expression data from peripheral blood mononuclear cells
Cited by: 11
Author(s): Zhenwei Shang, Wenjing Sun, Mingming Zhang, Lei Xu, Xueyuan Jia, Ruijie Zhang, Songbin Fu
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.8380
Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma
Cited by: 4
Author(s): Minhua Rong, Zhan-Hui Zhu, Ying Guan, Meiwei Li, Jiashuo Zheng, Yue-qi Huang, Dan‐Ming Wei, Yingmei Li, Ximei Wu, Hui-ping Bu, Hui-liu Peng, Xiaolin Wei, Guosheng Li, Mingxuan Li, Ming‐Hui Chen, Su-Hua Huang
Software Mentions: 1
Published: almost 5 years ago
10.1007/s00018-020-03556-1
Updating dual-specificity tyrosine-phosphorylation-regulated kinase 2 (DYRK2): molecular basis, functions and role in diseases
Cited by: 23
Author(s): Alejandro Correa-Sáez, Rafael Jiménez‐Izquierdo, Martín Garrido‐Rodriguez, Rosario Morrugares, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 1
Published: over 4 years ago
10.1186/s12943-019-0996-0
Genome-wide identification of cancer-specific alternative splicing in circRNA
Cited by: 57
Author(s): Jing Feng, Ke Chen, Xin Dong, Xiaolong Xu, Yuxuan Jin, Xinyang Zhang, Wenbo Chen, Han Yang, Lin Shen, Yang Gao, Chunjiang He
Software Mentions: 1
Published: over 5 years ago
10.3389/fcell.2020.622424
Network and Pathway-Based Integrated Analysis Identified a Novel “rs28457673–miR-15/16/195/424/497 Family–IGF1R–MAPK Signaling Pathway” Axis Associated With Post-stroke Depression
Cited by: 5
Author(s): Yan Li, Zhichao Wang, Mingxi Zhu, Gui-Bo Fan, Gao-Shuo Xu, Tianyang Zhao, A-Yang Zhao, Shangwei Ning, Shijie Qi
Software Mentions: 1
Published: almost 4 years ago