Projects: bioconductor: clusterProfiler
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler
A universal enrichment tool for interpreting omics data
2 versions
Latest release: about 3 years ago
53 dependent packages
1,189,928 downloads total
Science Score: 75/100
Starting Score: 100 points
Bonuses:
Penalties:
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-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (75)
Papers Mentioning clusterProfiler 2,223
10.3389/fimmu.2021.708747
The Spleen as a Target to Characterize Immunomodulatory Effects of Down-Stream Processed Cyberlindnera jadinii Yeasts in Atlantic Salmon Exposed to a Dietary Soybean Meal ChallengeCited by: 8
Author(s): Byron Morales‐Lange, Jeleel Opeyemi Agboola, Jon Øvrum Hansen, Leidy Lagos, Ove Øyås, Luís Mercado, Liv Torunn Mydland, Margareth Øverland
Software Mentions: 1
Published: about 5 years ago
10.3389/fimmu.2020.603507
MAFB and MAF Transcription Factors as Macrophage Checkpoints for COVID-19 SeverityCited by: 16
Author(s): Miguel A. Vega, Miriam Simón-Fuentes, Arturo González de la Aleja, Concha Nieto, Marı́a Colmenares, Cristina Herrero, Ángeles Domínguez-Soto, Ángel L. Corbí
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2019.01252
Identification and Validation of an Immune-Related RNA Signature to Predict Survival of Patients With Head and Neck Squamous Cell CarcinomaCited by: 11
Author(s): Shuo Wu, Xinyi Dai, Dielai Xie
Software Mentions: 1
Published: almost 7 years ago
10.1002/jev2.12054
Highly efficient magnetic labelling allows MRI tracking of the homing of stem cell‐derived extracellular vesicles following systemic deliveryCited by: 32
Author(s): Han Zheng, Senquan Liu, Yigang Pei, Zheng Ding, Yuguo Li, Xinge Wang, Daqian Zhan, Shuli Xia, Tom A.P. Driedonks, Kenneth W. Witwer, Robert G. Weiss, Peter C.M. van Zijl, Jeff W.M. Bulte, Linzhao Cheng, Guanshu Liu
Software Mentions: 1
Published: almost 6 years ago
10.7150/jca.48661
Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosisCited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: almost 6 years ago
10.1155/2021/6439975
Development and Validation of a TNF Family-Based Signature for Predicting Prognosis, Tumor Immune Characteristics, and Immunotherapy Response in Colorectal Cancer PatientsCited by: 10
Author(s): Xiao Zheng, Kechao Nie, Tong Han, Lin Cheng, Zheyu Zhang, Weijun Peng, Dazun Shi
Software Mentions: 1
Published: about 5 years ago
10.3390/jcm8010073
Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics ApproachesCited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13059-020-02239-1
Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shapeCited by: 42
Author(s): Jiantao Guan, Yaoguang Xu, Yan Yu, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang, Jianhua Wei, Hua Xie
Software Mentions: 1
Published: almost 6 years ago
10.7150/jca.33737
Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell CarcinomaCited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: almost 7 years ago
10.1111/jcmm.16737
The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ <i>ATG2/ATG7/ATG16</i> axisCited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: over 5 years ago
10.3389/fcell.2021.638366
Decoding the Mechanism of Huanglian Jiedu Decoction in Treating Pneumonia Based on Network Pharmacology and Molecular DockingCited by: 26
Author(s): Xianhai Li, Hua Tang, Qiang Tang, Wei Chen
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.679241
The abaI/abaR Quorum Sensing System Effects on Pathogenicity in Acinetobacter baumanniiCited by: 11
Author(s): Xiaoyu Sun, Zhaohui Ni, Jie Tang, Yue Ding, Xinlei Wang, Fan Li
Software Mentions: 1
Published: over 5 years ago
10.1155/2019/5894926
Identification and Validation of Core Genes Involved in the Development of Papillary Thyroid Carcinoma via Bioinformatics AnalysisCited by: 6
Author(s): Xiaoyan Li, Jing He, Mingxia Zhou, Yun Cao, Yonglong Jin, Qiang Zou
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2020.00341
Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillusCited by: 16
Author(s): Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine‐Radhouane Khouja, Claude Murat, Kerrie Barry, Erika Lindquist, Francis Martin, Silvia Perotto
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2020.00419
Cryopreservation Induces Alterations of miRNA and mRNA Fragment Profiles of Bull SpermCited by: 17
Author(s): Aishao Shangguan, Hao Zhou, Wei Sun, Rui Ding, Xihe Li, Jiajia Li, Yang Zhou, Xing Chen, Fengling Ding, Liguo Yang, Shujun Zhang
Software Mentions: 1
Published: over 6 years ago
10.3389/fgene.2018.00425
Use of Laplacian Heat Diffusion Algorithm to Infer Novel Genes With Functions Related to UveitisCited by: 6
Author(s): Shiheng Lu, Ke Zhao, Xuefei Wang, Hui Liu, Xiamuxiya Ainiwaer, Yixin Xu, Min Ye
Software Mentions: 1
Published: about 8 years ago
10.3389/fcell.2021.637781
Abnormal Glucose Metabolism in Male Mice Offspring Conceived by in vitro Fertilization and Frozen-Thawed Embryo TransferCited by: 15
Author(s): Ning-Xin Qin, Zhiyang Zhou, Wenlong Zhao, Kexin Zou, Weihui Shi, Chuanjin Yu, Xia Liu, Ze-Han Dong, Yiting Mao, Xinmei Liu, Jian‐Zhong Sheng, Guo-Hui Ding, Yanting Wu, He‐Feng Huang
Software Mentions: 1
Published: over 5 years ago
10.3389/fcell.2021.701073
Genome Instability-Derived Genes Are Novel Prognostic Biomarkers for Triple-Negative Breast CancerCited by: 6
Author(s): Maoni Guo, San Ming Wang
Software Mentions: 1
Published: over 5 years ago
10.1186/s13601-020-00347-6
Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosaCited by: 24
Author(s): Anu Laulajainen‐Hongisto, Annina Lyly, Tanzeela Hanif, Kishor Dhaygude, Matti Kankainen, Risto Renkonen, Kati Donner, Pirkko Mattila, Tuomas Jartti, Jean Bousquet, Paula Kauppi, Sanna Toppila‐Salmi
Software Mentions: 1
Published: about 6 years ago
10.1186/s12906-020-03026-y
Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius LCited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/4780383
A Network Pharmacology Approach to Explore the Mechanisms of Shugan Jianpi Formula in Liver FibrosisCited by: 6
Author(s): Fan Chang, Fu Rong Wu, Jiafu Zhang, Hui Jiang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12935-021-02054-z
Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signalingCited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: over 5 years ago
10.1186/s13148-021-01067-9
Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRCCited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: over 5 years ago
10.3390/jcm10194584
The Potential Role of Proinflammatory Cytokines and Complement Components in the Development of Drug-Induced Neuropathy in Patients with Multiple MyelomaCited by: 4
Author(s): Karolina Łuczkowska, Magdalena Rutka, Dorota Rogińska, Edyta Paczkowska, Bartłomiej Baumert, Sławomir Milczarek, Martyna Górska, Piotr Kulig, Bogumiła Osękowska, Michał Janowski, Krzysztof Safranow, Krzysztof Sommerfeld, Ewa Borowiecka, Piotr Zawodny, Anna Koclęga, Grzegorz Helbig, Bogusław Machaliński
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.631187
A Study of the Regulatory Mechanism of the CB1/PPARγ2/PLIN1/HSL Pathway for Fat Metabolism in CattleCited by: 8
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.21872
A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapyCited by: 5
Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: about 9 years ago
10.1186/s12935-020-01345-1
DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroupsCited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: over 6 years ago
10.3389/fonc.2020.567042
Expressions of miR-302a, miR-105, and miR-888 Play Critical Roles in Pathogenesis, Radiotherapy, and Prognosis on Rectal Cancer Patients: A Study From Rectal Cancer Patients in a Swedish Rectal Cancer Trial of Preoperative Radiotherapy to Big Database AnalysesCited by: 7
Author(s): Meng Wei, Surajit Pathak, Xueli Zhang, Gunnar Adell, Ingvar Jarlsfelt, Birgitta Holmlund, Ziqiang Wang, Alexander S Zhang, Hong Zhang, Zong‐Guang Zhou, Xiao‐Feng Sun
Software Mentions: 1
Published: about 6 years ago
10.1155/2021/5546199
Investigation of the Mechanism of Complement System in Diabetic Nephropathy via Bioinformatics AnalysisCited by: 15
Author(s): Bojun Xu, Lei Wang, Huakui Zhan, Liangbin Zhao, Yuehan Wang, Meng‐Ru Shen, Keyang Xu, Li Li, Xu Luo, Shasha Zhou, Anqi Tang, Gang Liu, Lu Song, Yan Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.591545
PAFAH1B3 Expression Is Correlated With Gastric Cancer Cell Proliferation and Immune InfiltrationCited by: 8
Author(s): Tianyu Xie, Xin Guo, Di Wu, Shuo Li, Yuhan Lu, Xinxin Wang, Lin Chen
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2020.579215
Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic AneurysmCited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: almost 6 years ago
10.1155/2020/3159831
Clinical Significance and Prognostic Value of miR-28-5p in Colon CancerCited by: 4
Author(s): Jilin Li, Kezhi Li, Min Xie, Yanping Tang, Yin-Lin Tang, Bang-li Hu
Software Mentions: 1
Published: over 6 years ago
10.3389/fonc.2021.616372
Identification and Confirmation of the miR-30 Family as a Potential Central Player in Tobacco-Related Head and Neck Squamous Cell CarcinomaCited by: 6
Author(s): Tingting Zhang, Xueqiong Zhu, Qiang Sun, Xing Qin, Zhen Zhang, Yongdong Feng, Ming Yan, Wantao Chen
Software Mentions: 1
Published: over 5 years ago
10.1111/cpr.12701
Aconitine induces cardiomyocyte damage by mitigating BNIP3‐dependent mitophagy and the TNFα‐NLRP3 signalling axisCited by: 43
Author(s): Peng Fu, Nan Zhang, Chunting Wang, Xiaoyun Wang, Wei Huang, Cheng Peng, Gu He, Bo Han
Software Mentions: 1
Published: about 7 years ago
10.1155/2020/8862228
Expression and Prognostic Analysis of Integrins in Gastric CancerCited by: 7
Author(s): Junfu Wang, Ye Wang, Siwen Zhang, Yeyang Chen, Yue Qiu, Shao-Yi Duan, Bopei Li, Junqiang Chen
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00018-020-03556-1
Updating dual-specificity tyrosine-phosphorylation-regulated kinase 2 (DYRK2): molecular basis, functions and role in diseasesCited by: 23
Author(s): Alejandro Correa-Sáez, Rafael Jiménez‐Izquierdo, Martín Garrido‐Rodriguez, Rosario Morrugares, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 1
Published: over 6 years ago
10.18632/aging.101902
Role of global aberrant alternative splicing events in papillary thyroid cancer prognosisCited by: 29
Author(s): Peng Lin, Rong‐Quan He, Zhi‐Guang Huang, Rui Zhang, Huayu Wu, Lin Shi, Xiao‐Jiao Li, Qing Li, Gang Chen, Hong Yang, Yun He
Software Mentions: 1
Published: over 7 years ago
10.1186/s12935-021-02183-5
Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinomaCited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: about 5 years ago
10.3389/fonc.2021.579351
TIM-3 as a Prognostic Marker and a Potential Immunotherapy Target in Human Malignant Tumors: A Meta-Analysis and Bioinformatics ValidationCited by: 32
Author(s): Kui Zang, Liangliang Hui, Min Wang, Ying Huang, Xingxing Zhu, Bin Yao
Software Mentions: 1
Published: over 5 years ago
10.22074/cellj.2021.6969
Proteomics Analyses Reveal Functional Differences between Exosomes of Mesenchymal Stem Cells Derived from The Umbilical Cord and Those Derived from The Adipose Tissue.Cited by: 5
Author(s): Bin Liu, Guanglei Qiao, Wenwu Cao, C Henlu Li, Shaojun Pan, Lirui Wang, Yanlei Liu, Lijun Ma, Daxiang Cui
Software Mentions: 1
Published: over 5 years ago
10.22074/cellj.2020.6561
Gene Expression Microarray Data Meta-Analysis Identifies Candidate Genes and Molecular Mechanism Associated with Clear Cell Renal Cell Carcinoma.Cited by: 6
Author(s): Ying Wang, Haibin Wei, Lijian Song, Lu Xu, Jingyao Bao, Jiang Liu
Software Mentions: 1
Published: about 6 years ago
10.1186/s12885-020-07541-6
High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancerCited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/7103412
Potential Genes Associated with the Survival of Lung Adenocarcinoma Were Identified by MethylationCited by: 2
Author(s): Ziyuan Shen, Chenlu He, Haimiao Chen, Lishun Xiao, Yingliang Jin, Shuiping Huang
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41421-020-00194-6
Dysfunction of dimorphic sperm impairs male fertility in the silkwormCited by: 23
Author(s): Shuqing Chen, Yujia Liu, Yang Xu, Zulian Liu, Xun Luo, Jun Xu, Yongping Huang
Software Mentions: 1
Published: about 6 years ago
10.1038/s41421-020-0182-y
An in vivo strategy for knockdown of circular RNAsCited by: 24
Author(s): Nagarjuna Reddy Pamudurti, Inés Lucía Patop, Aishwarya Krishnamoorthy, Reut Ashwal-Fluss, Osnat Bartok, Sebastián Kadener
Software Mentions: 1
Published: about 6 years ago
10.1155/2020/9210748
Comparative Study of PPAR<i>γ</i> Targets in Human Extravillous and Villous CytotrophoblastsCited by: 8
Author(s): Fulin Liu, Christine Rouault, Mickaël Guesnon, Wencan Zhu, Karine Clément, Séverine A. Degrelle, Thierry Fournier
Software Mentions: 1
Published: over 6 years ago
10.18632/aging.203288
Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinomaCited by: 21
Author(s): Dongsheng He, Lifang Cai, Wei‐Ming Huang, Qing-Qing Weng, Xi Lin, Mengxing You, Shengyin Liao
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2021.659720
Jiyuan Oridonin A Overcomes Differentiation Blockade in Acute Myeloid Leukemia Cells With MLL Rearrangements via Multiple Signaling PathwaysCited by: 10
Author(s): Mei Qu, Yu Duan, Min Zhao, Zhanju Wang, Mengjie Zhao, Yao Zhao, Haihua Wang, Ke Yu, Ying Liu, Hong‐Min Liu, Liuya Wei, Zhenbo Hu
Software Mentions: 1
Published: over 5 years ago
10.1186/s13040-020-00225-8
Therapeutic mechanism of Toujie Quwen granules in COVID-19 based on network pharmacologyCited by: 16
Author(s): Ying Huang, Wenjiang Zheng, Yongshi Ni, Mian-sha Li, Jiankun Chen, Xiaohong Liu, Xinghua Tan, Ji-qiang Li
Software Mentions: 1
Published: about 6 years ago
10.1038/s41419-020-02757-7
Circular RNA circCTNNA1 promotes colorectal cancer progression by sponging miR-149-5p and regulating FOXM1 expressionCited by: 36
Author(s): Pengju Chen, Yunfeng Yao, Nan Yang, Li-Hua Gong, Yuanyuan Kong, Aiwen Wu
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-019-5715-0
Overlapping and unique roles played by ROCK1 and 2 in the modulation of coding and long noncoding RNA expressionCited by: 3
Author(s): Zhou He, Jigang Zhang, Xue Zhang, Guorong Fan, Liu Gao-lin, Qin Li
Software Mentions: 1
Published: over 7 years ago
10.1186/s12967-020-02539-x
Gut microbiota from coronary artery disease patients contributes to vascular dysfunction in mice by regulating bile acid metabolism and immune activationCited by: 29
Author(s): Honghong Liu, Ran Tian, Hui Wang, Siqin Feng, Hanyu Li, Ying Xiao, Xiaodong Luan, Zhiyu Zhang, Na Shi, Haitao Niu
Software Mentions: 1
Published: about 6 years ago
10.1186/s12885-020-07457-1
Genetically-regulated transcriptomics & copy number variation of proctitis points to altered mitochondrial and DNA repair mechanisms in individuals of European ancestryCited by: 5
Author(s): Gita A. Pathak, Renato Polimanti, Talisa Silzer, Frank R. Wendt, Ranajit Chakraborty, Nicole R. Phillips
Software Mentions: 1
Published: about 6 years ago
10.1186/s12918-018-0530-9
Comparisons of gene coexpression network modules in breast cancer and ovarian cancerCited by: 9
Author(s): Shuqin Zhang
Software Mentions: 1
Published: over 8 years ago
10.1186/s12885-021-08517-w
TBX5-AS1, an enhancer RNA, is a potential novel prognostic biomarker for lung adenocarcinomaCited by: 10
Author(s): Lin Cheng, Tong Han, Bolin Chen, Kechao Nie, Weijun Peng
Software Mentions: 1
Published: over 5 years ago
10.1186/s12918-018-0657-8
Network-based logistic regression integration method for biomarker identificationCited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41413-020-00121-1
Osteoclast-derived apoptotic bodies couple bone resorption and formation in bone remodelingCited by: 34
Author(s): Qinyu Ma, Mengmeng Liang, Yutong Wu, Fei Luo, Zaisong Ma, Shiwu Dong, Jiake Xu, Ce Dou
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2021.732419
Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle PregnancyCited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2019.00908
Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial FibrillationCited by: 6
Author(s): Dongmei Wu, Zhengkun Zhou, Shao‐Hua Fan, Zihui Zheng, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Xi Hong, Yuxin Zheng
Software Mentions: 1
Published: about 7 years ago
10.1186/s13068-021-01956-4
Over-expression of an electron transport protein OmcS provides sufficient NADH for d-lactate production in cyanobacteriumCited by: 17
Author(s): Hengkai Meng, Wei Zhang, Huawei Zhu, Fan Yang, Yanping Zhang, Jie Zhou, Yin Li
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2020.580027
Relevance of STK11 Mutations Regarding Immune Cell Infiltration, Drug Sensitivity, and Cellular Processes in Lung AdenocarcinomaCited by: 7
Author(s): Zhenqing Li, Bo Ding, Jianxun Xu, Kai Mao, Pengfei Zhang, Qun Xue
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41419-019-1537-x
Cancer testis antigen 55 deficiency attenuates colitis-associated colorectal cancer by inhibiting NF-κB signalingCited by: 8
Author(s): Huan Zhao, Wen-Ming Pan, Huihui Zhang, Yang Song, Jie Chen, Ying Xiang, Bingxin Gu, Shangze Li, Runlei Du, Xiaodong Zhang
Software Mentions: 1
Published: over 7 years ago
10.1038/s41419-020-02752-y
WFDC2 suppresses prostate cancer metastasis by modulating EGFR signaling inactivationCited by: 23
Author(s): Yaoyi Xiong, Lushun Yuan, Song Chen, Huimin Xu, Tianchen Peng, Lingao Ju, Gang Wang, Yu Xiao, Xinghuan Wang
Software Mentions: 1
Published: over 6 years ago
10.1155/2021/8578615
Exploring the Molecular Mechanism of Astragali Radix-Curcumae Rhizoma against Gastric Intraepithelial Neoplasia by Network Pharmacology and Molecular DockingCited by: 2
Author(s): Yuejin Ji, Yajun Liu, Jingyi Hu, Cheng Cheng, Jing Xing, Lei Zhu, Hong Shen
Software Mentions: 1
Published: about 5 years ago
10.18632/aging.202315
CCDC170 affects breast cancer apoptosis through IRE1 pathwayCited by: 10
Author(s): Qiong Wang, Yanrui Zhao, Hong Zheng, Qinghua Wang, Wei Wang, Ben Liu, Hongwei Han, Lina Zhang, Kexin Chen
Software Mentions: 1
Published: almost 6 years ago
10.1042/BSR20203565
Uncovering the mechanism of Ge-Gen-Qin-Lian decoction for treating ulcerative colitis based on network pharmacology and molecular docking verificationCited by: 19
Author(s): Lin Xu, Jiaqi Zhang, Yifan Wang, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2019.00845
Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vannameCited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: about 7 years ago
10.3390/cancers12040801
Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor CellsCited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: over 6 years ago
10.1186/s12885-021-08029-7
The characteristics of circRNA as competing endogenous RNA in pathogenesis of acute myeloid leukemiaCited by: 7
Author(s): Siyuan Zhang
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2019.00305
Transcriptome Analysis Revealed a Highly Connected Gene Module Associated With Cirrhosis to Hepatocellular Carcinoma DevelopmentCited by: 25
Author(s): Shan Shan, Wei Chen, Jidong Jia
Software Mentions: 1
Published: over 7 years ago
10.3389/fgene.2019.00396
Integrative Analysis of DiseaseLand Omics Database for Disease Signatures and Treatments: A Bipolar Case StudyCited by: 7
Author(s): Wang Chun, Bevan Emma Huang, Guang Chen, Timothy W. Lovenberg, David Pocalyko, Xiang Yao
Software Mentions: 1
Published: over 7 years ago
10.1042/BSR20202929
FOXD1 is a prognostic biomarker and correlated with macrophages infiltration in head and neck squamous cell carcinomaCited by: 3
Author(s): Huazhen Liang, Chunning Zhang, Chaoming Li, Changguo Li, Yanli Wang, Hua Lin
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-021-03092-5
Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)Cited by: 5
Author(s): Zhiyuan Liu, Hongbing She, Zhaosheng Xu, Helong Zhang, Guoliang Li, Shifan Zhang, Wei Qian
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-017-00826-0
Identification of IGF-1-enhanced cytokine expressions targeted by miR-181d in glioblastomas via an integrative miRNA/mRNA regulatory network analysisCited by: 27
Author(s): Kuo Hao Ho, Peng Hsu Chen, Edward Hsi, Chwen Ming Shih, Wei Chiao Chang, Chia Hsiung Cheng, Cheng Lin, Ku Chung Chen
Software Mentions: 1
Published: over 9 years ago
10.1155/2019/7631365
Using Network Pharmacology to Explore Potential Treatment Mechanism for Coronary Heart Disease Using Chuanxiong and Jiangxiang Essential Oils in Jingzhi Guanxin PrescriptionsCited by: 8
Author(s): Jia Tai, Junbo Zou, Xiaofei Zhang, Yu Wang, Yulin Liang, Deliang Guo, Mei Wang, Cheng‐Bin Cui, Jing Wang, Jiangxue Cheng, Yajun Shi
Software Mentions: 1
Published: about 7 years ago
10.1186/s12863-020-00869-9
Whole genome characterization of autochthonous Bos taurus brachyceros and introduced Bos indicus indicus cattle breeds in Cameroon regarding their adaptive phenotypic traits and pathogen resistanceCited by: 6
Author(s): Archile Paguem, Babette Abanda, Mbunkah Daniel Achukwi, Praveen Baskaran, Stefan Czemmel, Alfons Renz, Albert Eisenbarth
Software Mentions: 1
Published: over 6 years ago
10.3390/ani11051306
Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm EnvironmentsCited by: 2
Author(s): Sangdon Ryu, Minsoo Shin, Bohyun Yun, Woongji Lee, Hye‐Jin Choi, Min‐Kyoung Kang, Sangnam Oh, Younghoon Kim
Software Mentions: 1
Published: over 5 years ago
10.1155/2021/8831948
The Genetic and Epigenetic Mechanisms Involved in Irreversible Pulp Neural InflammationCited by: 7
Author(s): XI Xiao-xi, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xiangqiong Liu, Yupei Deng, Junming Xi, Haitong Pan, Qian Lin, Bo Li, Wanchen Ning, Xiao Jiang, Hanluo Li, Simin Li, Xianda Hu
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2019.01492
Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung CancerCited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: almost 7 years ago
10.3390/cancers13102369
MicroRNAs Deregulated in Intraductal Papillary Mucinous Neoplasm Converge on Actin Cytoskeleton-Related Pathways That Are Maintained in Pancreatic Ductal AdenocarcinomaCited by: 0
Author(s): Elena Fernandez-Castañer, María Vila-Casadesús, Elena Vila-Navarro, Carolina Parra, Juan José Lozano, Antoni Castells, Meritxell Gironella
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.679150
Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon CancerCited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: over 5 years ago
10.1186/s12920-021-00994-z
Deregulation of lncRNA HIST1H2AG-6 and AIM1-3 in peripheral blood mononuclear cells is associated with newly diagnosed type 2 diabetesCited by: 3
Author(s): Hui Jiang, Peian Lou, Xiaoluo Chen, Chenguang Wu, Shihe Shao
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers13061239
The Role of Autophagy and lncRNAs in the Maintenance of Cancer Stem CellsCited by: 11
Author(s): Leila Jahangiri, Tala Ishola, Perla Pucci, Ricky M Trigg, João D. Pereira, John A. Williams, Megan L Cavanagh, Georgios Gkoutos, Loukia Tsaprouni, Suzanne D. Turner
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers13092195
Enhanced Efficacy of Aurora Kinase Inhibitors in G2/M Checkpoint Deficient TP53 Mutant Uterine Carcinomas Is Linked to the Summation of LKB1–AKT–p53 InteractionsCited by: 0
Author(s): Katherine N. Lynch, Joyce F. Liu, Nikolas Kesten, Kin-Hoe Chow, Aniket Shetty, Rui-Yang He, Mosammat Faria Afreen, Liping Yuan, Ursula A. Matulonis, Whitfield B. Growdon, Michael G. Muto, Neil S. Horowitz, Colleen M. Feltmate, Michael J. Worley, Ross S. Berkowitz, Christopher P. Crum, Bo R. Rueda, Sarah J. Hill
Software Mentions: 1
Published: over 5 years ago
10.3390/cancers11111724
Coupled Genome-Wide DNA Methylation and Transcription Analysis Identified Rich Biomarkers and Drug Targets in Triple-Negative Breast CancerCited by: 7
Author(s): Maoni Guo, Siddharth Sinha, San Ming Wang
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12920-020-0661-x
Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancerCited by: 28
Author(s): Jianfeng Liang, Wanni Zhao, Pan Tong, Ping Li, Yuanli Zhao, Hua Li, Jun Liang
Software Mentions: 1
Published: almost 7 years ago
10.3390/cancers12123667
Common and Unique Transcription Signatures of YAP and TAZ in Gastric Cancer CellsCited by: 9
Author(s): Yaelim Lee, Megan Finch-Edmondson, Hamizah Ahmad Cognart, Bowen Zhu, Haiwei Song, Boon Chuan Low, Marius Sudol
Software Mentions: 1
Published: almost 6 years ago
10.3389/fgene.2020.00206
CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3pCited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0178549
Identification of key microRNAs and genes in preeclampsia by bioinformatics analysisCited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: over 9 years ago
10.1155/2021/8057587
Virtual Screening of Cablin Patchouli Herb as a Treatment for Heat Stress: A Study Based on Network Pharmacology, Molecular Docking, and Experimental VerificationCited by: 2
Author(s): Yan Xu, Lizhong Ding, Zhongtian Wang, Han Li, Liping Sun
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-021-08655-1
Characteristic of molecular subtypes in lung adenocarcinoma based on m6A RNA methylation modification and immune microenvironmentCited by: 13
Author(s): Hao Zhou, Miaosen Zheng, Muqi Shi, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Youlang Zhou, Jiahai Shi
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2021.650863
Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose TissuesCited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-018-34334-6
DNA methylation and associated gene expression in blood prior to lung cancer diagnosis in the Norwegian Women and Cancer cohortCited by: 28
Author(s): Torkjel M. Sandanger, Therese Haugdahl Nøst, Florence Guida, Charlotta Rylander, Gianluca Campanella, David C. Muller, Jenny van Dongen, Dorret I. Boomsma, Mattias Johansson, Paolo Víneis, Roel Vermeulen, Eiliv Lund, Marc Chadeau‐Hyam
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-019-39582-8
Integrative Analysis Revealing Human Adipose-Specific Genes and Consolidating Obesity LociCited by: 17
Author(s): Jinsoo Ahn, Huiguang Wu, Kichoon Lee
Software Mentions: 1
Published: over 7 years ago
10.1155/2020/6630659
Identification of miRNAs as the Crosstalk in the Interaction between Neural Stem/Progenitor Cells and Endothelial CellsCited by: 2
Author(s): Xin Wang, Simin Li, Yihong Ma, Yuzhen Xu, Anthony Chukwunonso Ogbuehi, Xianda Hu, Aneesha Acharya, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, Hanluo Li, Sebastian Gaus, Bernd Lethaus, Vuk Savković, Zhi Su
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12865-019-0316-x
Immune cell infiltration characteristics and related core genes in lupus nephritis: results from bioinformatic analysisCited by: 51
Author(s): Ying Cao, Weihao Tang, Wanxin Tang
Software Mentions: 1
Published: about 7 years ago
10.1038/s42003-020-0918-0
The feather degradation mechanisms of a new Streptomyces sp. isolate SCUT-3Cited by: 40
Author(s): Zhiwei Li, Shuang Liang, Ke Yao, Jun‐Jin Deng, Ming-Shu Zhang, De‐Lin Lu, Jiazhou Li, Xiao‐Chun Luo
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-019-43924-x
FN1, SPARC, and SERPINE1 are highly expressed and significantly related to a poor prognosis of gastric adenocarcinoma revealed by microarray and bioinformaticsCited by: 98
Author(s): Li Li, Zhou Zhu, Yong Zhao, Qi Zhang, Xiaoting Wu, Bei Miao, Jiang Cao, Sujuan Fei
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-018-5050-x
Prioritizing candidate genes post-GWAS using multiple sources of data for mastitis resistance in dairy cattleCited by: 47
Author(s): Zexi Cai, Bernt Guldbrandtsen, Mogens Sandø Lund, Goutam Sahana
Software Mentions: 1
Published: about 8 years ago
10.1155/2021/8862821
Network Pharmacology and Bioinformatics Methods Reveal the Mechanism of Zao-Jiao-Ci in the Treatment of LSCCCited by: 1
Author(s): Feng Xiang, Linman Li, Jieling Lin, Shasha Li, Guiyuan Peng
Software Mentions: 1
Published: over 5 years ago