bioconductor: clusterProfiler | Projects

10.18632/aging.103690

PRDX2 removal inhibits the cell cycle and autophagy in colorectal cancer cells
Cited by: 14
Author(s): Xiangru Zheng, Jinlai Wei, Wenjun Li, Xiaoli Li, Wuyi Wang, Jun Guo, Zhongxue Fu
Software Mentions: 2
Published: about 6 years ago

10.1038/s41438-021-00519-w

The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis)
Cited by: 16
Author(s): Fengchao Cui, Geli Taier, Manli Li, Xiaoxia Dai, Nan Hang, Xunzhong Zhang, Xiangfeng Wang, Kehua Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-020-0314-4

Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
Cited by: 34
Author(s): Lei Zhang, Yan Yu, Tianye Shi, Meng Kou, Jian Sun, Tao Xu, Qiang Li, Shaoyuan Wu, Qinghe Cao, Wenqian Hou, Zongyun Li
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103783

Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1002/advs.202001596

The Beneficial Role of Sunitinib in Tumor Immune Surveillance by Regulating Tumor PD‐L1
Cited by: 28
Author(s): Hui Li, Xinwei Kuang, Long Liang, Youqiong Ye, YongChang Zhang, Jialu Li, Fangyu Ma, Juan Tao, Guang Lei, Shuang Zhao, Juan Su, Nong Yang, Cong Peng, Xiaowei Xu, Mien‐Chie Hung, Leng Han, Hong Liu, Jing Liu, Xiang Chen
Software Mentions: 2
Published: over 5 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: over 5 years ago

10.1001/jamanetworkopen.2020.35048

Molecular Diversity of Clinically Stable Human Kidney Allografts
Cited by: 8
Author(s): Dmitry Rychkov, Swastika Sur, Marina Sirota, Minnie M. Sarwal
Software Mentions: 2
Published: over 5 years ago

10.3390/ani10112184

Liver Expression of IGF2 and Related Proteins in ZBED6 Gene-Edited Pig by RNA-Seq
Cited by: 4
Author(s): Hailin Zhao, Mingli Wu, Shirong Liu, Xiaoqin Tang, Xiaohua Yi, Li Qi, Shuhui Wang, Xiuzhu Sun
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: about 5 years ago

10.3390/ani10101792

Genome-Wide Characterization and Comparative Analyses of Simple Sequence Repeats among Four Miniature Pig Breeds
Cited by: 4
Author(s): Hongyang Wang, Yang Fu, Peng Gu, Yingying Zhang, Weilong Tu, Zhe Chao, Huali Wu, Jian Cao, Xiang Zhou, Bang Liu, Jennifer J. Michal, Chun Chieh Fan, Yongsong Tan
Software Mentions: 2
Published: almost 6 years ago

10.7150/jca.35854

Combining Bioinformatics and Experiments to Identify and Verify Key Genes with Prognostic Values in Endometrial Carcinoma
Cited by: 25
Author(s): Wenchao Zhang, Lingling Gao, Caixia Wang, Shuang Wang, Di Sun, Xiao Li, Miao Liu, Yue Qi, Juanjuan Liu, Bei Lin
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.46328

Development and validation of a DNA repair gene signature for prognosis prediction in Colon Cancer
Cited by: 9
Author(s): Xin Wang, Cong Tan, Min Ye, Xu Wang, Wei-Hung Weng, Meng Zhang, Shujuan Ni, Lei Wang, Dan Huang, Zhaohui Huang, Ming Xu, Weiqi Sheng
Software Mentions: 2
Published: over 6 years ago

10.7150/jca.51141

6 Circulating miRNAs can be used as Non-invasive Biomarkers for the Detection of Cervical Lesions
Cited by: 6
Author(s): Ruoqi Ning, Silu Meng, Lin Wang, Yulin Jia, Fangxu Tang, Haiying Sun, Zhi Zhang, Chong Zhang, Xinran Fan, Bing Xiao, Chunhua Yang, Shuang Li
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: over 7 years ago

10.1111/acel.13360

Single human oocyte transcriptome analysis reveals distinct maturation stage‐dependent pathways impacted by age
Cited by: 34
Author(s): Sílvia Llonch, Montserrat Barragán, Paula Nieto, Anna Mallol, Marc Elosua-Bayés, Patricia Lorden, Sara Ruiz, Filippo Zambelli, Holger Heyn, Rita Vassena, Bernhard Payer
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.15285

Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
Cited by: 8
Author(s): Ling Zhang, Qin Han, Zheng Liu, Wei Peng, Han Cao, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103153

Identification of transforming growth factor beta induced (TGFBI) as an immune-related prognostic factor in clear cell renal cell carcinoma (ccRCC)
Cited by: 14
Author(s): Guo-Wei Du, Xin Yan, Zhao Chun-hua, Ren‐Jie Zhang, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Tong-Zu Liu
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.101747

Transcriptome analysis reveals immune-related gene expression changes with age in giant panda (Ailuropoda melanoleuca) blood
Cited by: 16
Author(s): Lianming Du, Qin Liu, Fang Shen, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.16400

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells
Cited by: 38
Author(s): Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Yang Xi
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8951907

Baicalin Represses C/EBPβ via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: about 6 years ago

10.1111/jcmm.16563

Integrated microenvironment‐associated genomic profiles identify LRRC15 mediating recurrent glioblastoma‐associated macrophages infiltration
Cited by: 6
Author(s): Haoneng Tang, Wensi Liu, Zhao‐Xu Xu, Jinwen Zhao, Weitao Wang, Zhaojin Yu, Minjie Wei
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-98948-z

Tanshinone IIA affects the malignant growth of Cholangiocarcinoma cells by inhibiting the PI3K-Akt-mTOR pathway
Cited by: 5
Author(s): Huayuan Liu, Caiyun Liu, Mengya Wang, Dongxu Sun, Pengcheng Zhu, Ping Zhang, Xueying Tan, Guangjun Shi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-99344-3

Transcriptomic analysis revealed increased expression of genes involved in keratinization in the tears of COVID-19 patients
Cited by: 8
Author(s): Leonardo Mastropasqua, Lisa Toto, Luigi Chiricosta, Francesca Diomede, Agnese Gugliandolo, Serena Silvestro, Guya Diletta Marconi, Bruna Sinjari, Jacopo Vecchiet, Francesco Cipollone, Damiano D’Ardes, Antonio Auricchio, Manuela Lanzini, Sergio Caputi, Rossella D’Aloisio, Emanuela Mazzon, Oriana Trubiani
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41392-020-00382-6

Molecular characteristics of primary pulmonary lymphoepithelioma-like carcinoma based on integrated genomic analyses
Cited by: 18
Author(s): Bojiang Chen, Yu Zhang, Shenyu Dai, Ping Zhou, Wenxin Luo, Zhoufeng Wang, Xuping Chen, Cheng Peng, Guoya Zheng, Jing Ren, Xiaodong Yang, Weimin Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s13287-020-01690-y

Comparative separation methods and biological characteristics of human placental and umbilical cord mesenchymal stem cells in serum-free culture conditions
Cited by: 21
Author(s): Yingying Xiao, Feng Chen, Fenghua Li, Qing Peng, Li Yang, Li Shao, Jiang Du, Yi Gao, Yifeng Wang
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.102319

Systematic profiling of alternative splicing events and splicing factors in left- and right-sided colon cancer
Cited by: 20
Author(s): Xiaoliang Huang, Jing Liu, Xiaokui Mo, Liu H, Wei Chen, Ling Huang, J Chen, Chao Tian, Yongsheng Meng, Guojun Wu, Wen Xie, Peter Fj, Liu Z, Weizhong Tang
Software Mentions: 2
Published: almost 7 years ago

10.1155/2018/8238496

Genome-Wide DNA Methylation Analysis during Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells
Cited by: 14
Author(s): Yangyang Cao, Haoqing Yang, Luyuan Jin, Juan Du, Zhipeng Fan
Software Mentions: 2
Published: almost 8 years ago

10.7150/thno.44782

Therapeutic potential of HERS spheroids in tooth regeneration
Cited by: 10
Author(s): Yufeng Duan, Xuebing Li, Sicheng Zhang, Shikai Wang, Tao Wang, Hong Chen, Yiqin Yang, Sixun Jia, Guoqing Chen, Weidong Tian
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.202984

A zinc finger protein gene signature enables bladder cancer treatment stratification
Cited by: 2
Author(s): Jiandong Zhang, Chen Zhang, Peng Cao, Xiang Zheng, Baozhong Yu, Haoyuan Cao, Zihao Gao, Feilong Zhang, Jiyuan Wu, Huawei Cao, Changzhen Hao, Zejia Sun, Wei Wang
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.57701

TGF-β loaded exosome enhances ischemic wound healing in vitro and in vivo
Cited by: 46
Author(s): Ao Shi, Jialun Li, Xiaozhen Guo, Michael S. Sabbah, Soulmaz Boroumand, Tony Chieh-Ting Huang, Chunfeng Zhao, André Terzic, Atta Behfar, Steven L. Moran
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.102492

Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients
Cited by: 33
Author(s): Changshun Yang, Yu Zhang, Xiaoqin Xu, Weihua Li
Software Mentions: 2
Published: over 6 years ago

10.1128/mBio.00909-21

Persister Escherichia coli Cells Have a Lower Intracellular pH than Susceptible Cells but Maintain Their pH in Response to Antibiotic Treatment
Cited by: 41
Author(s): Olivia Goode, Ashley Smith, Ashraf Zarkan, Jehangir Cama, Brandon M. Invergo, Daaniyah Belgami, Santiago Caño-Muñiz, Jeremy Metz, Paul O’Neill, Aaron R. Jeffries, Isobel H. Norville, Jonathan David, David Summers, Stefano Pagliara
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSystems.00416-20

Transcriptional Rewiring, Adaptation, and the Role of Gene Duplication in the Metabolism of Ethanol of Saccharomyces cerevisiae
Cited by: 4
Author(s): Beatriz Sabater-Muñoz, Florian Mattenberger, Mario A. Fares, Christina Toft
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12935-021-02190-6

Single cell RNA-seq data and bulk gene profiles reveal a novel signature of disease progression in multiple myeloma
Cited by: 4
Author(s): Zhiyong Zeng, Jizhen Lin, Kejie Zhang, Xizhe Guo, Xiaoqiang Zheng, Apeng Yang, Junmin Chen
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12935-021-02138-w

NCAPG promotes the progression of lung adenocarcinoma via the TGF-β signaling pathway
Cited by: 20
Author(s): Yun Wu, Ying Lin, Junfan Pan, Xunwei Tu, Yiquan Xu, Hongru Li, Yu‐Sheng Chen
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12935-020-01507-1

Comprehensive analysis of key genes associated with ceRNA networks in nasopharyngeal carcinoma based on bioinformatics analysis
Cited by: 9
Author(s): Yujin Xu, Xinyi Huang, Wangzhong Ye, Yangfan Zhang, Changkun Li, Peide Bai, Zhongqiu Lin, Chuanben Chen
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12935-020-01572-6

Integrated analysis of immune-related genes in endometrial carcinoma
Cited by: 9
Author(s): Yiru Wang, Yunduo Liu, Yue Guan, Hao Li, Yuan Liu, Mengjun Zhang, Ping Cui, Dan Kong, Xiuwei Chen, Hang Yin
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12935-021-01830-1

The immune‐related biomarker TEK inhibits the development of clear cell renal cell carcinoma (ccRCC) by regulating AKT phosphorylation
Cited by: 10
Author(s): Siming Chen, Mengxue Yu, Lingao Ju, Gang Wang, Kaiyu Qian, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-019-0852-8

Overexpression of mircoRNA-137 inhibits cervical cancer cell invasion, migration and epithelial–mesenchymal transition by suppressing the TGF-β/smad pathway via binding to GREM1
Cited by: 23
Author(s): Hui Miao, Nuan Wang, Lin-Xin Shi, Zheng Wang, Wenbo Song
Software Mentions: 2
Published: about 7 years ago

10.1186/s12935-020-1165-7

Immune-related prognosis biomarkers associated with osteosarcoma microenvironment
Cited by: 40
Author(s): Wenxuan Hong, Hong Ye, Yujun Gu, Mouyuan Liu, Yayun Ji, Zifang Huang, Junlin Yang, Lulu Ma
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.102477

Identification of prognostic genes in the acute myeloid leukemia microenvironment
Cited by: 31
Author(s): Shaoxin Huang, Biyu Zhang, Wei Fan, Qihan Zhao, Lei Yang, Xin Wang, Denggang Fu
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00175-21

A MicroRNA Gene Panel Predicts the Vaginal Microbiota Composition
Cited by: 4
Author(s): Liqin Cheng, Dominika Kaźmierczak, Johanna Norenhag, Marica Hamsten, Emma Fransson, Ina Schuppe-Koistinen, Matts Olovsson, Lars Engstrand, Per Hydbring, Juan Du
Software Mentions: 2
Published: about 5 years ago

10.1186/s13058-019-1241-x

Anillin regulates breast cancer cell migration, growth, and metastasis by non-canonical mechanisms involving control of cell stemness and differentiation
Cited by: 29
Author(s): Dongdong Wang, Nayden G. Naydenov, Mikhail G. Dozmorov, Jennifer E. Koblinski, Andrei I. Ivanov
Software Mentions: 2
Published: over 6 years ago

10.1002/cam4.1854

Genomewide identification of a novel six-LncRNA signature to improve prognosis prediction in resectable hepatocellular carcinoma
Cited by: 28
Author(s): Ying Wu, Pengshuo Wang, Ben-gang Wang, Xu Lu, Wanxia Fang, Xiaofang Che, Xiujuan Qu, Yunpeng Liu, Zhi Li
Software Mentions: 2
Published: almost 8 years ago

10.3390/brainsci11040436

Behavioral and Gene Expression Analysis of Stxbp6-Knockout Mice
Cited by: 2
Author(s): Cong Liu, Qian Hu, Yan Chen, Lingqian Wu, Xionghao Liu, Desheng Liang
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00397-21

The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle
Cited by: 8
Author(s): Timothy R. Howard, Marni S. Crow, Todd M. Greco, Krystal K. Lum, Tuo Li, Ileana M. Cristea
Software Mentions: 2
Published: about 5 years ago

10.1002/cam4.2232

CLEC3A, MMP7, and LCN2 as novel markers for predicting recurrence in resected G1 and G2 pancreatic neuroendocrine tumors
Cited by: 17
Author(s): Masami Minemura, Takamasa Oono, Nao Fujimori, Takehiro Takaoka, Ken Kawabe, Yoshihiro Miyasaka, Takao Ohtsuka, Daisuke Saito, Masafumi Nakamura, Yasuyuki Ohkawa, Yoshinao Oda, Mikita Suyama, Tetsuhide Ito, Yoshihiro Ogawa
Software Mentions: 2
Published: about 7 years ago

10.1002/cam4.4016

Integrative analysis of TP73 profile prognostic significance in WHO grade II/III glioma
Cited by: 3
Author(s): Yanming Chen, Ye Wang, Qiheng He, Wen Wang, Tan Zhang, Zhongyong Wang, Jun Dong, Qing Lan, Jizong Zhao
Software Mentions: 2
Published: about 5 years ago

10.7150/ijbs.42962

Phosphoinositide specific phospholipase Cγ1 inhibition-driven autophagy caused cell death in human lung adenocarcinoma A549 cells in vivo and in vitro
Cited by: 8
Author(s): Xiaohong Lü, Haijing Fu, Rui Chen, Yue Wang, Yan-yan Zhan, Gang Song, Tianhui Hu, Chun Xia, Xuemei Tian, Bing Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41409-019-0766-z

PDGFB-expressing mesenchymal stem cells improve human hematopoietic stem cell engraftment in immunodeficient mice
Cited by: 21
Author(s): Xiuxiu Yin, Linping Hu, Yawen Zhang, Caiying Zhu, Hui Cheng, Xiaowei Xie, Ming Shi, Ping Zhu, Xueying Zhao, Wanqiu Chen, Lu Zhang, Cameron Arakaki, Sha Hao, Mei Wang, Wenbin Cao, Shihui Ma, Xiaobing Zhang, Tao Cheng
Software Mentions: 2
Published: over 6 years ago

10.26508/lsa.202000672

MALDI-IMS combined with shotgun proteomics identify and localize new factors in male infertility
Cited by: 6
Author(s): Shibojyoti Lahiri, Wasim Aftab, Lena Walenta, Leena Strauss, Matti Poutanen, Artur Mayerhofer, Axel Imhof
Software Mentions: 2
Published: over 5 years ago

10.1186/s12944-020-01390-9

Lipid metabolism gene-wide profile and survival signature of lung adenocarcinoma
Cited by: 30
Author(s): Jinyou Li, Qiang Li, Zhenyu Su, Qi Sun, Yong Zhao, Tienan Feng, Jianhai Jiang, Feng Zhang, Haitao Ma
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/2109325

Disease-Specific Autoantibodies Induce Trained Immunity in RA Synovial Tissues and Its Gene Signature Correlates with the Response to Clinical Therapy
Cited by: 3
Author(s): Xiaoli Dai, Xiaoqiu Dai, Zheng Gong, Chen Yang, Keqin Zeng, Fang‐Yuan Gong, Qiao Zhong, Xiao‐Ming Gao
Software Mentions: 2
Published: almost 6 years ago

10.1097/MD.0000000000022815

Identification of therapeutic targets and mechanisms of tumorigenesis in non-small cell lung cancer using multiple-microarray analysis
Cited by: 3
Author(s): Dan Zhao, MU Hai-jun, Hai Bing Shi, Hong Xia Bi, Yun Jiang, Guo Hua Liu, Hong Zheng, Bo Liu
Software Mentions: 2
Published: almost 6 years ago

10.1097/MD.0000000000026271

Bioinformatics analysis of the key potential ceRNA biomarkers in human thymic epithelial tumors
Cited by: 4
Author(s): Kegong Chen, Long Bai, Lin Ji, Libo Wu, Guanghua Li
Software Mentions: 2
Published: about 5 years ago

10.1097/MD.0000000000026623

Increased expression of Cyclin F in liver cancer predicts poor prognosis
Cited by: 3
Author(s): Zelong Yang, Yang Han, Tao Guo, Yifei Wang, Kai He, Haoran Hu, Yong Chen
Software Mentions: 2
Published: about 5 years ago

10.1186/s13068-020-01819-4

Genetic, transcriptional, and regulatory landscape of monolignol biosynthesis pathway in Miscanthus × giganteus
Cited by: 10
Author(s): Xiaofei Zeng, Jiajing Sheng, Fenglin Zhu, Tianzi Wei, Lingling Zhao, Xiaohu Hu, Xianwei Zheng, Fangjian Zhou, Zhongli Hu, Youxiang Diao, Surong Jin
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms9071417

Acinetobacter tandoii ZM06 Assists Glutamicibacter nicotianae ZM05 in Resisting Cadmium Pressure to Preserve Dipropyl Phthalate Biodegradation
Cited by: 10
Author(s): Xuejun Wang, Si Shen, Hao Wu, Haixia Wang, Lvjing Wang, Zhenmei Lü
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms9050994

Transcriptome Analysis and Autophagy Investigation of LoVo Cells Stimulated with Exosomes Derived from T. asiatica Adult Worms
Cited by: 3
Author(s): Panhong Liang, Yanping Li, Mao Li, Tingli Liu, Shaohua Zhang, Muhammad Ehsan, Liqun Wang, Aimin Guo, Guoliang Chen, Xuenong Luo
Software Mentions: 2
Published: over 5 years ago

10.1093/molbev/msab203

Genomic Signatures Supporting the Symbiosis and Formation of Chitinous Tube in the Deep-Sea Tubeworm Paraescarpia echinospica
Cited by: 29
Author(s): Yanan Sun, Jin Sun, Yi Yang, Yi Lan, Jack Chi-Ho Ip, Wai Chuen Wong, Yick Hang Kwan, Yanjie Zhang, Zhuang Han, Jian‐Wen Qiu, Pei‐Yuan Qian
Software Mentions: 2
Published: about 5 years ago

10.1186/s13041-018-0376-5

RNAseq analysis of hippocampal microglia after kainic acid-induced seizures
Cited by: 35
Author(s): Dale B. Bosco, Jiaying Zheng, Zhiyan Xu, Jinrong Peng, Ukpong B. Eyo, Ke Tang, Cheng Yan, Jun Huang, Lijie Feng, Guoying Wu, Jason R. Richardson, Hui Wang, Long Wu
Software Mentions: 2
Published: about 8 years ago

10.1186/s13041-019-0507-7

Dysregulation of neuron differentiation in an autistic savant with exceptional memory
Cited by: 11
Author(s): Jinjing Song, Xudong Yang, Ying Zhou, Lei Chen, Xu Zhang, Zhuxi Liu, Weibo Niu, Nengpeng Zhan, Xuelian Fan, Abdul A. Khan, Yifang Kuang, Lulu Song, Guang He, Weidong Li
Software Mentions: 2
Published: over 6 years ago

10.1186/s12943-021-01342-6

Identification of tumor antigens and immune subtypes of cholangiocarcinoma for mRNA vaccine development
Cited by: 66
Author(s): Xing Huang, Tianyu Tang, Gang Zhang, Tingbo Liang
Software Mentions: 2
Published: over 5 years ago

10.1186/s10020-020-00252-5

Identification of an RNA binding protein-related gene signature in hepatocellular carcinoma patients
Cited by: 8
Author(s): Li Wang, Na Zhou, Jing Qu, Man Jiang
Software Mentions: 2
Published: over 5 years ago

10.1186/s10020-021-00342-y

The antioxidant N-acetylcysteine promotes immune response and inhibits epithelial-mesenchymal transition to alleviate pulmonary fibrosis in chronic obstructive pulmonary disease by suppressing the VWF/p38 MAPK axis
Cited by: 19
Author(s): Lihua Julie Zhu, Fei Xu, Xiuhua Kang, Jing Zhou, Qinqin Yao, Lefu Yang, Wei Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1155/2021/6657658

Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative Stress
Cited by: 6
Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0178549

Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis
Cited by: 40
Author(s): Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2021.655284

HN-CNN: A Heterogeneous Network Based on Convolutional Neural Network for m7 G Site Disease Association Prediction
Cited by: 7
Author(s): Lin Zhang, Jin Chen, Jiani Ma, Hui Liu
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/8765461

Identification of a Novel Eight-lncRNA Prognostic Signature for HBV-HCC and Analysis of Their Functions Based on Coexpression and ceRNA Networks
Cited by: 18
Author(s): Xiaonan Zhao, Zhan-Tao Bai, Chenghua Li, Chuanlun Sheng, Hongyan Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.521004

Identification and Validation of Potential Pathogenic Genes and Prognostic Markers in ESCC by Integrated Bioinformatics Analysis
Cited by: 10
Author(s): Lu Tang, Yuqiao Chen, Ping Xiong, Yuan Zhou, Hong Jiang, Wei Guo, Wei Zhuang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.650863

Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
Cited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.8357

Identification of key genes associated with multiple sclerosis based on gene expression data from peripheral blood mononuclear cells
Cited by: 11
Author(s): Zhenwei Shang, Wenjing Sun, Mingming Zhang, Lei Xu, Xueyuan Jia, Ruijie Zhang, Songbin Fu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00206

CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
Cited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.16737

The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ ATG2/ATG7/ATG16 axis
Cited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: about 5 years ago

10.1186/s12920-020-0661-x

Comprehensive molecular characterization of inhibitors of apoptosis proteins (IAPs) for therapeutic targeting in cancer
Cited by: 28
Author(s): Jianfeng Liang, Wanni Zhao, Pan Tong, Ping Li, Yuanli Zhao, Hua Li, Jun Liang
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.00845

Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vanname
Cited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.732419

Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle Pregnancy
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Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.52695

Tgfβ signaling is critical for maintenance of the tendon cell fate
Cited by: 55
Author(s): Guak Kim Tan, Brian A. Pryce, Anna Stabio, John V. Brigande, Chaojie Wang, Zheng Xia, Sara F. Tufa, Douglas R. Keene, Ronen Schweitzer
Software Mentions: 1
Published: over 6 years ago

10.3390/jcm8010073

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Cited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2020.579215

Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic Aneurysm
Cited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-021-00994-z

Deregulation of lncRNA HIST1H2AG-6 and AIM1-3 in peripheral blood mononuclear cells is associated with newly diagnosed type 2 diabetes
Cited by: 3
Author(s): Hui Jiang, Peian Lou, Xiaoluo Chen, Chenguang Wu, Shihe Shao
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.25165

Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left-right organizer
Cited by: 23
Author(s): Bárbara Tavares, Raquel Jacinto, Pedro Sampaio, Sara Pestana, Andreia Pinto, Andreia Vaz, Mónica Roxo-Rosa, Rui Gardner, Telma Lopes, Britta Schilling, Ian Henry, Leonor Saúde, Susana S. Lopes
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-021-03092-5

Quantitative trait loci (QTL) analysis of leaf related traits in spinach (Spinacia oleracea L.)
Cited by: 5
Author(s): Zhiyuan Liu, Hongbing She, Zhaosheng Xu, Helong Zhang, Guoliang Li, Shifan Zhang, Wei Qian
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.655885

Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.
Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.625977

A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network Analysis
Cited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: over 5 years ago

10.1186/s12918-018-0657-8

Network-based logistic regression integration method for biomarker identification
Cited by: 13
Author(s): Ke Zhang, Wei Geng, Shuqin Zhang
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.11872

Proteomic analysis reveals some common proteins in the kidney stone matrix
Cited by: 14
Author(s): Yuanyuan Yang, Sen-Yuan Hong, Cong Liu, Jiaqiao Zhang, Henglong Hu, Xiaolong Chen, Kehua Jiang, Fa Sun, Qing Wang, Shaogang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12918-018-0530-9

Comparisons of gene coexpression network modules in breast cancer and ovarian cancer
Cited by: 9
Author(s): Shuqin Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13040-020-00225-8

Therapeutic mechanism of Toujie Quwen granules in COVID-19 based on network pharmacology
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Author(s): Ying Huang, Wenjiang Zheng, Yongshi Ni, Mian-sha Li, Jiankun Chen, Xiaohong Liu, Xinghua Tan, Ji-qiang Li
Software Mentions: 1
Published: almost 6 years ago

10.1097/MD.0000000000025452

Prognostic value of long noncoding RNA urothelial carcinoma-associated 1 in esophageal carcinoma
Cited by: 0
Author(s): Hong Zhang, Jie Tian, Jianming Tang, Tianhu Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00674

Predicting Cancer Tissue-of-Origin by a Machine Learning Method Using DNA Somatic Mutation Data
Cited by: 6
Author(s): Xiaojun Liu, Lianxing Li, Lihong Peng, Bo Wang, Jidong Lang, Qingqing Lu, Xizhe Zhang, Yi Sun, Geng Tian, Huajun Zhang, Liqian Zhou
Software Mentions: 1
Published: about 6 years ago

10.1038/s41388-020-01512-8

LncRNA SNHG11 facilitates tumor metastasis by interacting with and stabilizing HIF-1α
Cited by: 55
Author(s): Linguo Xu, Lin Huan, Tong Guo, Yangjun Wu, Yanfang Liu, Qifeng Wang, Shenglin Huang, Ye Xu, Linhui Liang, Xianghuo He
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.631187

A Study of the Regulatory Mechanism of the CB1/PPARγ2/PLIN1/HSL Pathway for Fat Metabolism in Cattle
Cited by: 8
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 5 years ago

10.1128/MCB.00063-19

Calcineurin Broadly Regulates the Initiation of Skeletal Muscle-Specific Gene Expression by Binding Target Promoters and Facilitating the Interaction of the SWI/SNF Chromatin Remodeling Enzyme
Cited by: 13
Author(s): Hanna Witwicka, Jumpei Nogami, Sabriya A. Syed, Kazuhira Maehara, Teresita Padilla‐Benavides, Yasuyuki Ohkawa, Anthony N. Imbalzano
Software Mentions: 1
Published: almost 7 years ago

10.1080/21655979.2020.1822714

A new metabolic signature contributes to disease progression and predicts worse survival in melanoma
Cited by: 7
Author(s): Mengdi Wan, Binyu Zhuang, Xiaohui Dai, Liang Zhang, Fangqing Zhao, Yan You
Software Mentions: 1
Published: over 6 years ago

10.1242/bio.056564

The transcriptional landscape of the cultured murine middle ear epithelium in vitro
Cited by: 0
Author(s): Apoorva Mulay, Miraj Kobad Chowdhury, Cameron James, Lynne Bingle, Colin D. Bingle
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00908

Comprehensive RNA-Seq Data Analysis Identifies Key mRNAs and lncRNAs in Atrial Fibrillation
Cited by: 6
Author(s): Dongmei Wu, Zhengkun Zhou, Shao‐Hua Fan, Zihui Zheng, Xin Wen, Xin‐Rui Han, Shan Wang, Yongjian Wang, Zi-Feng Zhang, Qun Shan, Meng‐Qiu Li, Bin Hu, Jun Lü, Guiquan Chen, Xi Hong, Yuxin Zheng
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2019.00305

Transcriptome Analysis Revealed a Highly Connected Gene Module Associated With Cirrhosis to Hepatocellular Carcinoma Development
Cited by: 25
Author(s): Shan Shan, Wei Chen, Jidong Jia
Software Mentions: 1
Published: over 7 years ago

10.1186/s13287-020-01594-x

Intra-articular delivery of extracellular vesicles secreted by chondrogenic progenitor cells from MRL/MpJ superhealer mice enhances articular cartilage repair in a mouse injury model
Cited by: 45
Author(s): Rikang Wang, Wei Jiang, Lang Zhang, Sai‐Sai Xie, Shuai Zhang, Shenfang Yuan, Yi Jin, Guangqian Zhou
Software Mentions: 1
Published: over 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223