bioconductor: clusterProfiler | Projects

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: about 4 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: almost 4 years ago

10.7150/jca.46328

Development and validation of a DNA repair gene signature for prognosis prediction in Colon Cancer
Cited by: 9
Author(s): Xin Wang, Cong Tan, Min Ye, Xu Wang, Wei-Hung Weng, Meng Zhang, Shujuan Ni, Lei Wang, Dan Huang, Zhaohui Huang, Ming Xu, Weiqi Sheng
Software Mentions: 2
Published: almost 5 years ago

10.7150/jca.35854

Combining Bioinformatics and Experiments to Identify and Verify Key Genes with Prognostic Values in Endometrial Carcinoma
Cited by: 25
Author(s): Wenchao Zhang, Lingling Gao, Caixia Wang, Shuang Wang, Di Sun, Xiao Li, Miao Liu, Yue Qi, Juanjuan Liu, Bei Lin
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: over 3 years ago

10.7150/jca.51141

6 Circulating miRNAs can be used as Non-invasive Biomarkers for the Detection of Cervical Lesions
Cited by: 6
Author(s): Ruoqi Ning, Silu Meng, Lin Wang, Yulin Jia, Fangxu Tang, Haiying Sun, Zhi Zhang, Chong Zhang, Xinran Fan, Bing Xiao, Chunhua Yang, Shuang Li
Software Mentions: 2
Published: almost 4 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: over 5 years ago

10.1001/jamanetworkopen.2020.35048

Molecular Diversity of Clinically Stable Human Kidney Allografts
Cited by: 8
Author(s): Dmitry Rychkov, Swastika Sur, Marina Sirota, Minnie M. Sarwal
Software Mentions: 2
Published: almost 4 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: about 4 years ago

10.1038/s41438-020-0314-4

Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
Cited by: 34
Author(s): Lei Zhang, Yan Yu, Tianye Shi, Meng Kou, Jian Sun, Tao Xu, Qiang Li, Shaoyuan Wu, Qinghe Cao, Wenqian Hou, Zongyun Li
Software Mentions: 2
Published: over 4 years ago

10.1038/s41438-021-00519-w

The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis)
Cited by: 16
Author(s): Fengchao Cui, Geli Taier, Manli Li, Xiaoxia Dai, Nan Hang, Xunzhong Zhang, Xiangfeng Wang, Kehua Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s41065-020-00142-0

Identification of potential crucial genes and key pathways in osteosarcoma
Cited by: 18
Author(s): Junwei Liu, Siyu Wu, Xiaoyu Xie, Ziming Wang, Qinghua Lei
Software Mentions: 2
Published: over 4 years ago

10.1186/s13073-020-00776-9

Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Cited by: 115
Author(s): Wei Lin, Pawan Noel, Erkut Borazanci, Jeeyun Lee, Albert Amini, In Woong Han, Jin Seok Heo, Gayle Jameson, Cory R. Fraser, Margaux Steinbach, Yanghee Woo, Yuman Fong, Derek Cridebring, Daniel D. Von Hoff, Joon Oh Park, Haiyong Han
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.15285

Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
Cited by: 8
Author(s): Ling Zhang, Qin Han, Zheng Liu, Wei Peng, Han Cao, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: over 4 years ago

10.3390/genes12030341

Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant
Cited by: 12
Author(s): Lei Zhang, Haoyun Sun, Tao Xu, Tianye Shi, Zongyun Li, Wenqian Hou
Software Mentions: 2
Published: over 3 years ago

10.3390/genes11121457

Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations
Cited by: 3
Author(s): Shinji Ohsawa, Toshiaki Umemura, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.16400

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells
Cited by: 38
Author(s): Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Yang Xi
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.16563

Integrated microenvironment‐associated genomic profiles identify LRRC15 mediating recurrent glioblastoma‐associated macrophages infiltration
Cited by: 6
Author(s): Haoneng Tang, Wensi Liu, Zhao‐Xu Xu, Jinwen Zhao, Weitao Wang, Zhaojin Yu, Minjie Wei
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/7182914

Integrative Network Analysis Revealed Genetic Impact of Pyruvate Kinase L/R on Hepatocyte Proliferation and Graft Survival after Liver Transplantation
Cited by: 2
Author(s): Zhengtao Liu, Junsheng Zhao, Qianqian Wang, Hai Zhu, Junjie Qian, Shuai Wang, Shuping Que, Feng Zhang, Shengyong Yin, Lin Zhou, Lei Geng, Shusen Zheng
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms20081958

The Effects of Epigallocatechin Gallate (EGCG) on Pulmonary Fibroblasts of Idiopathic Pulmonary Fibrosis (IPF)—A Next-Generation Sequencing and Bioinformatic Approach
Cited by: 25
Author(s): Ming‐Ju Tsai, Wei‐An Chang, Ssu‐Hui Liao, Kai‐Chih Chang, Chau‐Chyun Sheu, Po‐Lin Kuo
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers12092573

N-MYC Downstream Regulated Gene 4 (NDRG4), a Frequent Downregulated Gene through DNA Hypermethylation, plays a Tumor Suppressive Role in Esophageal Adenocarcinoma
Cited by: 5
Author(s): Long‐Long Cao, Tingsong Hu, Heng Lu, Dunfa Peng
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers13030489

Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells
Cited by: 5
Author(s): Claire D. James, Siddharth Saini, Fatmata Sesay, Kevin Ko, Jessica Felthousen-Rusbasan, Audra N. Iness, Tara J. Nulton, Brad E. Windle, Mikhail G. Dozmorov, Iain M. Morgan, Larisa Litovchick
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-98948-z

Tanshinone IIA affects the malignant growth of Cholangiocarcinoma cells by inhibiting the PI3K-Akt-mTOR pathway
Cited by: 5
Author(s): Huayuan Liu, Caiyun Liu, Mengya Wang, Dongxu Sun, Pengcheng Zhu, Ping Zhang, Xueying Tan, Guangjun Shi
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-99344-3

Transcriptomic analysis revealed increased expression of genes involved in keratinization in the tears of COVID-19 patients
Cited by: 8
Author(s): Leonardo Mastropasqua, Lisa Toto, Luigi Chiricosta, Francesca Diomede, Agnese Gugliandolo, Serena Silvestro, Guya Diletta Marconi, Bruna Sinjari, Jacopo Vecchiet, Francesco Cipollone, Damiano D’Ardes, Antonio Auricchio, Manuela Lanzini, Sergio Caputi, Rossella D’Aloisio, Emanuela Mazzon, Oriana Trubiani
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: about 3 years ago

10.1038/s41392-020-00382-6

Molecular characteristics of primary pulmonary lymphoepithelioma-like carcinoma based on integrated genomic analyses
Cited by: 18
Author(s): Bojiang Chen, Yu Zhang, Shenyu Dai, Ping Zhou, Wenxin Luo, Zhoufeng Wang, Xuping Chen, Cheng Peng, Guoya Zheng, Jing Ren, Xiaodong Yang, Weimin Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.655757

The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11010034

Antrocin Sensitizes Prostate Cancer Cells to Radiotherapy through Inhibiting PI3K/AKT and MAPK Signaling Pathways
Cited by: 31
Author(s): Yuan Chen, David T.W. Tzeng, Yiping Huang, Chun–Ming Lin, U‐Ging Lo, Chia‐Lin Wu, Lin H, Jer‐Tsong Hsieh, Chih‐Hsin Tang, Chih‐Ho Lai
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.711984

Regulatory Mechanism and Experimental Verification of Patchouli Alcohol on Gastric Cancer Cell Based on Network Pharmacology
Cited by: 8
Author(s): Yuzhi Song, Liang Chang, Xiaoyuan Wang, Bibo Tan, Jianbo Li, Jie Zhang, Fengbin Zhang, Lianmei Zhao, Guangjie Liu, Bingjie Huo
Software Mentions: 2
Published: about 3 years ago

10.1186/s13287-020-01690-y

Comparative separation methods and biological characteristics of human placental and umbilical cord mesenchymal stem cells in serum-free culture conditions
Cited by: 21
Author(s): Yingying Xiao, Feng Chen, Fenghua Li, Qing Peng, Li Yang, Li Shao, Jiang Du, Yi Gao, Yifeng Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers13061397

Mutations Associated with No Durable Clinical Benefit to Immune Checkpoint Blockade in Non-S-Cell Lung Cancer
Cited by: 8
Author(s): Guangsheng Zhu, Dian Ren, Xi Liu, Ruifeng Shi, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade de Mello, Jun Chen, Song Xu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.00829

High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.604319

Linc00665 Can Predict the Response to Cisplatin-Paclitaxel Neoadjuvant Chemotherapy for Breast Cancer Patients
Cited by: 9
Author(s): Huijuan Dai, Xiaonan Sheng, Rui Sha, Jing Peng, Fan Yang, Liheng Zhou, Yingsong Lin, Yaqian Xu, Shan Zhang, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: over 3 years ago

10.1155/2018/8238496

Genome-Wide DNA Methylation Analysis during Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells
Cited by: 14
Author(s): Yangyang Cao, Haoqing Yang, Luyuan Jin, Juan Du, Zhipeng Fan
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0246610

Adherent and suspension baby hamster kidney cells have a different cytoskeleton and surface receptor repertoire
Cited by: 2
Author(s): Veronika Dill, Florian Pfaff, Aline Zimmer, Martin Beer, Michael Eschbaumer
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0063656

Protective Effects of Andrographolide Analogue AL-1 on ROS-Induced RIN-mβ Cell Death by Inducing ROS Generation
Cited by: 16
Author(s): Guang-Rong Yan, Hui-Hua Zhou, Yang Wang, Yin Zhong, Zi-Lu Tan, Yuqiang Wang, Qing-Yu He
Software Mentions: 2
Published: over 11 years ago

10.7150/thno.44782

Therapeutic potential of HERS spheroids in tooth regeneration
Cited by: 10
Author(s): Yufeng Duan, Xuebing Li, Sicheng Zhang, Shikai Wang, Tao Wang, Hong Chen, Yiqin Yang, Sixun Jia, Guoqing Chen, Weidong Tian
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/8951907

Baicalin Represses C/EBPβ via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: over 4 years ago

10.3389/fneur.2020.580997

Electroacupuncture Alleviates Mechanical Allodynia of a Rat Model of CRPS-I and Modulates Gene Expression Profiles in Dorsal Root Ganglia
Cited by: 7
Author(s): Jie Wang, Xiaoli Zheng, Boyu Liu, Chengyu Yin, Ruixiang Chen, Xiaojie Li, Yuanyuan Li, Huimin Nie, Danyi Zeng, Xiaofen He, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: about 4 years ago

10.3389/fnmol.2019.00196

Differential Expression Profiles and Functional Prediction of Circular RNAs and Long Non-coding RNAs in the Hippocampus of Nrf2-Knockout Mice
Cited by: 15
Author(s): Runjiao Zhang, Yan Li, Qing Liu, Yanjing Gao, Juan Du, Jun Ma, Shao-Guang Sun, Lei Wang
Software Mentions: 2
Published: over 5 years ago

10.7150/thno.57701

TGF-β loaded exosome enhances ischemic wound healing in vitro and in vivo
Cited by: 46
Author(s): Ao Shi, Jialun Li, Xiaozhen Guo, Michael S. Sabbah, Soulmaz Boroumand, Tony Chieh-Ting Huang, Chunfeng Zhao, André Terzic, Atta Behfar, Steven L. Moran
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmolb.2021.652250

Identification of mRNA-, circRNA- and lncRNA- Associated ceRNA Networks and Potential Biomarkers for Preeclampsia From Umbilical Vein Endothelial Cells
Cited by: 15
Author(s): Dan Chen, Biwei He, Ping Zheng, Shuying Wang, Xueya Zhao, Jinyu Liu, Xingyu Yang, Weiwei Cheng
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.726387

Establishment and Validation of a Genetic Label Associated With M2 Macrophage Infiltration to Predict Survival in Patients With Colon Cancer and to Assist in Immunotherapy
Cited by: 5
Author(s): Boyang Xu, Ziqi Peng, Guanyu Yan, Ningning Wang, Moye Chen, Xue Qing Yao, Mingjun Sun, Yi An
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2019.00730

Differentially Expressed Genes Associated With Prognosis in Locally Advanced Lymph Node-Negative Prostate Cancer
Cited by: 20
Author(s): Elena A. Pudova, E. N. Lukyanova, K. M. Nyushko, Dmitry S. Mikhaylenko, Andrew R. Zaretsky, Anastasiya V. Snezhkina, М. В. Савватеева, Anastasiya A. Kobelyatskaya, Nataliya V. Melnikova, Н. Н. Волченко, Г. Д. Ефремов, Ksenia M. Klimina, А. А. Белова, Marina V. Kiseleva, А. Д. Каприн, B. Ya. Alekseev, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 2
Published: over 5 years ago

10.3390/nu10081047

Coffee Consumption and Whole-Blood Gene Expression in the Norwegian Women and Cancer Post-Genome Cohort
Cited by: 10
Author(s): Runa Borgund Barnung, Therese Haugdahl Nøst, Stine Marie Ulven, Guri Skeie, Anja Olsen
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.612196

Identification of a Ubiquitination-Related Gene Risk Model for Predicting Survival in Patients With Pancreatic Cancer
Cited by: 8
Author(s): Hao Zuo, Luojun Chen, Na Li, Qing Song
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.580027

Relevance of STK11 Mutations Regarding Immune Cell Infiltration, Drug Sensitivity, and Cellular Processes in Lung Adenocarcinoma
Cited by: 7
Author(s): Zhenqing Li, Bo Ding, Jianxun Xu, Kai Mao, Pengfei Zhang, Qun Xue
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00845

Genome-Wide Analysis of Alternative Splicing Provides Insights Into Stress Response of the Pacific White Shrimp Litopenaeus vanname
Cited by: 9
Author(s): Xiaoxi Zhang, Jianbo Yuan, Xiaojun Zhang, Xianhui Qin, Jianhai Xiang, Fuhua Li
Software Mentions: 1
Published: about 5 years ago

10.1111/jcmm.14758

Proteomics of epicardial adipose tissue in patients with heart failure
Cited by: 23
Author(s): Lei Zhao, Zongsheng Guo, Pan Wang, Meimei Zheng, Xiaoyan Yang, Ye Liu, Zheng Ma, Mulei Chen, Xinchun Yang
Software Mentions: 1
Published: about 5 years ago

10.7150/ijbs.39779

Therapeutic Targeting of CDK7 Suppresses Tumor Progression in Intrahepatic Cholangiocarcinoma
Cited by: 11
Author(s): Huadong Chen, Chen‐Song Huang, Qiong‐Cong Xu, Fuxi Li, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Wei Zhao, Xiaoyu Yin
Software Mentions: 1
Published: almost 5 years ago

10.1111/jcmm.16737

The lncRNA HOTAIR regulates autophagy and affects lipopolysaccharide‐induced acute lung injury through the miR‐17‐5p/ ATG2/ATG7/ATG16 axis
Cited by: 5
Author(s): Yujun Li, Zhike Liang, He Huang, Xiaomei Huang, Zexun Mo, Jinwen Tan, Weihong Guo, Ziwen Zhao, Shuquan Wei
Software Mentions: 1
Published: over 3 years ago

10.1186/s13046-018-0970-5

Dysregulation of miR-6868-5p/FOXM1 circuit contributes to colorectal cancer angiogenesis
Cited by: 19
Author(s): Ye Wang, WU Mei-juan, Zengjie Lei, Mengxi Huang, Zhiping Li, Liya Wang, Qijun Cao, Dong Cho Han, Yue Chang, Yanyan Chen, Fei Liu, Lijun Xue, Xiaobei Mao, Jiao Geng, Yanan Chen, Tingting Dai, Lili Ren, Qin Wang, Hong-Ju Yu, Cheng Chen, Xiaoyuan Chen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.732419

Analysis of Genomic Copy Number Variation in Miscarriages During Early and Middle Pregnancy
Cited by: 8
Author(s): Heming Wu, Qingyan Huang, Xia Zhang, Zhikang Yu, Zhixiong Zhong
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers12040801

Extracellular Protease ADAMTS1 Is Required at Early Stages of Human Uveal Melanoma Development by Inducing Stemness and Endothelial-Like Features on Tumor Cells
Cited by: 14
Author(s): Carlos Peris-Torres, María del Carmen Plaza-Calonge, Raúl López-Domínguez, Silvia Domínguez-García, Antonio Barrientos‐Durán, Pedro Carmona-Sáez, Juan Carlos Rodrı́guez-Manzaneque
Software Mentions: 1
Published: over 4 years ago

10.7150/jca.50370

Increased IGFBP7 Expression Correlates with Poor Prognosis and Immune Infiltration in Gastric Cancer
Cited by: 13
Author(s): Zhao Qi, Rulin Zhao, Conghua Song, Huan Wang, Jianfang Rong, Fangfei Wang, Lili Yan, Yanping Song, Yong Xie
Software Mentions: 1
Published: almost 4 years ago

10.3390/jcm8010073

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Cited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.659720

Jiyuan Oridonin A Overcomes Differentiation Blockade in Acute Myeloid Leukemia Cells With MLL Rearrangements via Multiple Signaling Pathways
Cited by: 10
Author(s): Mei Qu, Yu Duan, Min Zhao, Zhanju Wang, Mengjie Zhao, Yao Zhao, Haihua Wang, Ke Yu, Ying Liu, Hong‐Min Liu, Liuya Wei, Zhenbo Hu
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.579215

Combining Bioinformatics Techniques to Study the Key Immune-Related Genes in Abdominal Aortic Aneurysm
Cited by: 7
Author(s): Han Nie, Jiacong Qiu, Wen Si, Weimin Zhou
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2019.01492

Cross-Cancer Pleiotropic Analysis Reveals Novel Susceptibility Loci for Lung Cancer
Cited by: 6
Author(s): Limin Wang, Meng Zhu, Yuzhuo Wang, Jingyi Fan, Qi Sun, Mengmeng Ji, Xikang Fan, Jian Xie, Juncheng Dai, Guangfu Jin, Zhibin Hu, Hongxia Ma, Hongbing Shen
Software Mentions: 1
Published: almost 5 years ago

10.7150/jca.39328

Effect of CELSR3 on the Cell Cycle and Apoptosis of Hepatocellular Carcinoma Cells
Cited by: 8
Author(s): Zucheng Xie, Yi‐Wu Dang, Huayu Wu, Rong‐Quan He, Jie Ma, Zhigang Peng, Minhua Rong, Zhekun Li, Jiapeng Yang, Yizhao Jiang, Gang Chen, Lihua Yang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2021.579351

TIM-3 as a Prognostic Marker and a Potential Immunotherapy Target in Human Malignant Tumors: A Meta-Analysis and Bioinformatics Validation
Cited by: 32
Author(s): Kui Zang, Liangliang Hui, Min Wang, Ying Huang, Xingxing Zhu, Bin Yao
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.655885

Use of Comparative Transcriptomics Combined With Physiological Analyses to Identify Key Factors Underlying Cadmium Accumulation in Brassica juncea L.
Cited by: 8
Author(s): Dawei Zhang, Yunyan Du, Dan He, Dinggang Zhou, Jinfeng Wu, Jia-Shi Peng, Huan Liu, Zhongsong Liu, Mingli Yan
Software Mentions: 1
Published: over 3 years ago

10.1002/jev2.12054

Highly efficient magnetic labelling allows MRI tracking of the homing of stem cell‐derived extracellular vesicles following systemic delivery
Cited by: 32
Author(s): Han Zheng, Senquan Liu, Yigang Pei, Zheng Ding, Yuguo Li, Xinge Wang, Daqian Zhan, Shuli Xia, Tom A.P. Driedonks, Kenneth W. Witwer, Robert G. Weiss, Peter C.M. van Zijl, Jeff W.M. Bulte, Linzhao Cheng, Guanshu Liu
Software Mentions: 1
Published: almost 4 years ago

10.1111/jcmm.16307

Role of EIF4G1 network in non‐small cell lung cancers (NSCLC) cell survival and disease progression
Cited by: 7
Author(s): Luis Del Valle, Lu Dai, Hui‐Yi Lin, Zhen Lin, Jungang Chen, Steven R. Post, Zhiqiang Qin
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.616372

Identification and Confirmation of the miR-30 Family as a Potential Central Player in Tobacco-Related Head and Neck Squamous Cell Carcinoma
Cited by: 6
Author(s): Tingting Zhang, Xueqiong Zhu, Qiang Sun, Xing Qin, Zhen Zhang, Yongdong Feng, Ming Yan, Wantao Chen
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.625977

A Seven-Long Non-coding RNA Signature Improves Prognosis Prediction of Lung Adenocarcinoma: An Integrated Competing Endogenous RNA Network Analysis
Cited by: 7
Author(s): Rang Li, Kedong Han, Dehua Xu, Xiaolin Chen, Shujin Lan, Yuanjun Liao, Shengnan Sun, Shaoqi Rao
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.25165

Notch/Her12 signalling modulates, motile/immotile cilia ratio downstream of Foxj1a in zebrafish left-right organizer
Cited by: 23
Author(s): Bárbara Tavares, Raquel Jacinto, Pedro Sampaio, Sara Pestana, Andreia Pinto, Andreia Vaz, Mónica Roxo-Rosa, Rui Gardner, Telma Lopes, Britta Schilling, Ian Henry, Leonor Saúde, Susana S. Lopes
Software Mentions: 1
Published: about 7 years ago

10.3389/fonc.2020.567042

Expressions of miR-302a, miR-105, and miR-888 Play Critical Roles in Pathogenesis, Radiotherapy, and Prognosis on Rectal Cancer Patients: A Study From Rectal Cancer Patients in a Swedish Rectal Cancer Trial of Preoperative Radiotherapy to Big Database Analyses
Cited by: 7
Author(s): Meng Wei, Surajit Pathak, Xueli Zhang, Gunnar Adell, Ingvar Jarlsfelt, Birgitta Holmlund, Ziqiang Wang, Alexander S Zhang, Hong Zhang, Zong‐Guang Zhou, Xiao‐Feng Sun
Software Mentions: 1
Published: about 4 years ago

10.7150/jca.48661

Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosis
Cited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.52695

Tgfβ signaling is critical for maintenance of the tendon cell fate
Cited by: 55
Author(s): Guak Kim Tan, Brian A. Pryce, Anna Stabio, John V. Brigande, Chaojie Wang, Zheng Xia, Sara F. Tufa, Douglas R. Keene, Ronen Schweitzer
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-020-02239-1

Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape
Cited by: 42
Author(s): Jiantao Guan, Yaoguang Xu, Yan Yu, Jun Fu, Fei Ren, Jiying Guo, Jianbo Zhao, Quan Jiang, Jianhua Wei, Hua Xie
Software Mentions: 1
Published: almost 4 years ago

10.1111/cpr.12701

Aconitine induces cardiomyocyte damage by mitigating BNIP3‐dependent mitophagy and the TNFα‐NLRP3 signalling axis
Cited by: 43
Author(s): Peng Fu, Nan Zhang, Chunting Wang, Xiaoyun Wang, Wei Huang, Cheng Peng, Gu He, Bo Han
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2021.591545

PAFAH1B3 Expression Is Correlated With Gastric Cancer Cell Proliferation and Immune Infiltration
Cited by: 8
Author(s): Tianyu Xie, Xin Guo, Di Wu, Shuo Li, Yuhan Lu, Xinxin Wang, Lin Chen
Software Mentions: 1
Published: over 3 years ago

10.1007/s00018-020-03556-1

Updating dual-specificity tyrosine-phosphorylation-regulated kinase 2 (DYRK2): molecular basis, functions and role in diseases
Cited by: 23
Author(s): Alejandro Correa-Sáez, Rafael Jiménez‐Izquierdo, Martín Garrido‐Rodriguez, Rosario Morrugares, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/5894926

Identification and Validation of Core Genes Involved in the Development of Papillary Thyroid Carcinoma via Bioinformatics Analysis
Cited by: 6
Author(s): Xiaoyan Li, Jing He, Mingxia Zhou, Yun Cao, Yonglong Jin, Qiang Zou
Software Mentions: 1
Published: about 5 years ago

10.1186/s13287-020-01594-x

Intra-articular delivery of extracellular vesicles secreted by chondrogenic progenitor cells from MRL/MpJ superhealer mice enhances articular cartilage repair in a mouse injury model
Cited by: 45
Author(s): Rikang Wang, Wei Jiang, Lang Zhang, Sai‐Sai Xie, Shuai Zhang, Shenfang Yuan, Yi Jin, Guangqian Zhou
Software Mentions: 1
Published: over 4 years ago

10.7150/jca.33737

Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2020.00674

Predicting Cancer Tissue-of-Origin by a Machine Learning Method Using DNA Somatic Mutation Data
Cited by: 6
Author(s): Xiaojun Liu, Lianxing Li, Lihong Peng, Bo Wang, Jidong Lang, Qingqing Lu, Xizhe Zhang, Yi Sun, Geng Tian, Huajun Zhang, Liqian Zhou
Software Mentions: 1
Published: over 4 years ago

10.22074/cellj.2021.6969

Proteomics Analyses Reveal Functional Differences between Exosomes of Mesenchymal Stem Cells Derived from The Umbilical Cord and Those Derived from The Adipose Tissue.
Cited by: 5
Author(s): Bin Liu, Guanglei Qiao, Wenwu Cao, C Henlu Li, Shaojun Pan, Lirui Wang, Yanlei Liu, Lijun Ma, Daxiang Cui
Software Mentions: 1
Published: over 3 years ago

10.1155/2021/6657658

Serum Fetuin-B Levels Are Elevated in Women with Metabolic Syndrome and Associated with Increased Oxidative Stress
Cited by: 6
Author(s): Shiyao Xue, Hongdong Han, Shunli Rui, Gangyi Yang, Yizhou Huang, Bin Zhan, Shan Geng, Hua Liu, Chen Chen, Ling Li
Software Mentions: 1
Published: about 3 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223