bioconductor: clusterProfiler | Projects

10.1186/s11658-018-0110-4

Systematic identification of the key candidate genes in breast cancer stroma
Cited by: 29
Author(s): Yanxia Wang, Hui Xu, Baoan Zhu, Qiu Zhen-ling, Lin Zx
Software Mentions: 2
Published: over 7 years ago

10.3389/fphar.2020.00485

Kunxian Capsule for Rheumatoid Arthritis: Inhibition of Inflammatory Network and Reducing Adverse Reactions Through Drug Matching
Cited by: 20
Author(s): Yujun Tang, Yi Zeng, Lin Li, Zhihua Xie, Chengping Wen, Lin Huang
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2020.559046

Notoginsenoside R1 Protects Against the Acrylamide-Induced Neurotoxicity via Upregulating Trx-1-Mediated ITGAV Expression: Involvement of Autophagy
Cited by: 3
Author(s): Wenjun Wang, Lu Huang, Elizabeth Rosalind Thomas, Yingying Hu, Fancai Zeng, Xiang Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2021.627126

Blood microRNA Signatures Serve as Potential Diagnostic Biomarkers for Hepatic Sinusoidal Obstruction Syndrome Caused by Gynura japonica Containing Pyrrolizidine Alkaloids
Cited by: 3
Author(s): Xunjiang Wang, Wei Zhang, Yongfeng Yang, Yiran Chen, Yuzheng Zhuge, Aizhen Xiong, Li Yang, Zhengtao Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2020.00284

An Integrated Pharmacology-Based Analysis for Antidepressant Mechanism of Chinese Herbal Formula Xiao-Yao-San
Cited by: 35
Author(s): Naijun Yuan, Lian Gong, Kairui Tang, Liangliang He, Wenzhi Hao, Xiaojuan Li, Qingyu Ma, Jiaxu Chen
Software Mentions: 2
Published: about 6 years ago

10.1038/s41438-020-0314-4

Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
Cited by: 34
Author(s): Lei Zhang, Yan Yu, Tianye Shi, Meng Kou, Jian Sun, Tao Xu, Qiang Li, Shaoyuan Wu, Qinghe Cao, Wenqian Hou, Zongyun Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fimmu.2019.02956

Profile of Histone H3 Lysine 4 Trimethylation and the Effect of Lipopolysaccharide/Immune Complex-Activated Macrophages on Endotoxemia
Cited by: 12
Author(s): Vichaya Ruenjaiman, Patcharavadee Butta, Yu-Wei Leu, Monnat Pongpanich, Asada Leelahavanichkul, Patipark Kueanjinda, Tanapat Palaga
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12030341

Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant
Cited by: 12
Author(s): Lei Zhang, Haoyun Sun, Tao Xu, Tianye Shi, Zongyun Li, Wenqian Hou
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.15285

Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
Cited by: 8
Author(s): Ling Zhang, Qin Han, Zheng Liu, Wei Peng, Han Cao, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang
Software Mentions: 2
Published: about 6 years ago

10.3390/genes11121457

Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations
Cited by: 3
Author(s): Shinji Ohsawa, Toshiaki Umemura, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2020.502573

A Middle-Out Modeling Strategy to Extend a Colon Cancer Logical Model Improves Drug Synergy Predictions in Epithelial-Derived Cancer Cell Lines
Cited by: 10
Author(s): Eirini Tsirvouli, Vasundra Touré, Barbara Niederdorfer, Miguél Vázquez, Åsmund Flobak, Martin Kuiper
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00293

Zearalenone Exposure Enhanced the Expression of Tumorigenesis Genes in Donkey Granulosa Cells via the PTEN/PI3K/AKT Signaling Pathway
Cited by: 15
Author(s): Guoliang Zhang, Junlin Song, Chuanliang Ji, Yulong Feng, Jie Yu, C. M. Nyachoti, Gongshe Yang
Software Mentions: 2
Published: almost 8 years ago

10.1111/jcmm.16400

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells
Cited by: 38
Author(s): Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Yang Xi
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.728932

RhoA/ROCK-YAP/TAZ Axis Regulates the Fibrotic Activity in Dexamethasone-Treated Human Trabecular Meshwork Cells
Cited by: 15
Author(s): Zhicheng Liu, Shanshan Li, Xiuqing Qian, Lin Li, Haixia Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1111/jcmm.16563

Integrated microenvironment‐associated genomic profiles identify LRRC15 mediating recurrent glioblastoma‐associated macrophages infiltration
Cited by: 6
Author(s): Haoneng Tang, Wensi Liu, Zhao‐Xu Xu, Jinwen Zhao, Weitao Wang, Zhaojin Yu, Minjie Wei
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2020.562416

Phosphatase and Tensin Homolog Mutation in Immune Cell Infiltration and Clinicopathological Features of Low-Grade Gliomas
Cited by: 2
Author(s): Feng Peng, Zhenqing Li, Yuchen Li, Yuelin Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s13018-020-01655-0

MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway
Cited by: 9
Author(s): Changzeng Liu, Jianming Gao, Guangyan Su, Yu‐Tao Xiang, Wei Le
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms20102491

Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20163930

Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (Sesamum indicum L.)
Cited by: 45
Author(s): Komivi Dossa, Marie Ali Mmadi, Rong Zhou, Tianyuan Zhang, Ruqi Su, Yujuan Zhang, Linhai Wang, Jun You
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20225539

Changes in Calcium Homeostasis and Gene Expression Implicated in Epilepsy in Hippocampi of Mice Overexpressing ORAI1
Cited by: 12
Author(s): Łukasz Majewski, Bartosz Wojtaś, Filip Maciąg, Jacek Kuźnicki
Software Mentions: 2
Published: over 6 years ago

10.3389/fmolb.2020.602328

Prognostic Biomarker TP53 Mutations for Immune Checkpoint Blockade Therapy and Its Association With Tumor Microenvironment of Lung Adenocarcinoma
Cited by: 25
Author(s): Xinqing Lin, Liqiang Wang, Xiaohong Xie, Yinyin Qin, Zhanhong Xie, Ming Ouyang, Chengzhi Zhou
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.598427

An Extracellular Matrix-Based Signature Associated With Immune Microenvironment Predicts the Prognosis and Therapeutic Responses of Patients With Oesophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Hongpan Zhang, Qi Shi, Zhihao Yang, Kaige Wang, Zhe Zhang, Zheng Huang, Xiaobin Cui, Feng Li
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21020474

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress
Cited by: 37
Author(s): Mohammad Amin Omidbakhshfard, Neerakkal Sujeeth, Saurabh Gupta, Nooshin Omranian, Kieran J. Guinan, Yariv Brotman, Zoran Nikoloski, Alisdair R. Fernie, Bernd Mueller‐Roeber, Tsanko Gechev
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.724451

Genome of Ganoderma Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for Ganoderma tsugae
Cited by: 12
Author(s): Nan Jiang, Shuang Hu, Bing Peng, Zhenhao Li, Xiaohui Yuan, Shijun Xiao, Yongping Fu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.606482

Effects of Peptide Thanatin on the Growth and Transcriptome of Penicillium digitatum
Cited by: 8
Author(s): Guo-Gang Feng, Xindan Li, Wenjun Wang, Lili Deng, Kaifang Zeng
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21155365

Bovine Follicular Fluid and Extracellular Vesicles Derived from Follicular Fluid Alter the Bovine Oviductal Epithelial Cells Transcriptome
Cited by: 18
Author(s): Mohammad Mehedi Hasan, Janeli Viil, Freddy Lättekivi, James Ord, Qurat Ul Ain Reshi, Kersti Jääger, Agne Velthut-Meikas, Aneta Andronowska, Ülle Jaakma, Andres Salumets, Alireza Fazeli
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21239043

Multi-Omics Integration Highlights the Role of Ubiquitination in CCl4-Induced Liver Fibrosis
Cited by: 9
Author(s): María Mercado-Gómez, Fernando Lopitz‐Otsoa, Mikel Azkargorta, Marina Serrano‐Maciá, Sofía Lachiondo‐Ortega, Naroa Goikoetxea‐Usandizaga, Rubén Rodríguez-Agudo, David Fernández‐Ramos, Maider Bizkarguenaga, Virginia Gutiérrez‐de Juan, Benoît Lectez, Kerman Aloria, Jesús M. Arizmendi, Jorge Simón, Cristina Alonso, Juan José Lozano, Matías A. Ávila, Jesús M. Bañales, J. J. G. Marin, Naiara Beraza, José M. Mato, Félix Elortza, Rosa Barrio, James D. Sutherland, Ugo Mayor, María Luz Martínez‐Chantar, Teresa C. Delgado
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.00189

Loss of the Periplasmic Chaperone Skp and Mutations in the Efflux Pump AcrAB-TolC Play a Role in Acquired Resistance to Antimicrobial Peptides in Salmonella typhimurium
Cited by: 11
Author(s): Gal Kapach, Reut Nuri, Christiane Schmidt, Adi Danin, Shir Ferrera, Alon Savidor, Roman G. Gerlach, Yechiel Shai
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21249461

Differential Co-Expression Analyses Allow the Identification of Critical Signalling Pathways Altered during Tumour Transformation and Progression
Cited by: 25
Author(s): Aurora Savino, Paolo Provero, Valeria Poli
Software Mentions: 2
Published: over 5 years ago

10.3390/jpm11080730

Evaluating, Filtering and Clustering Genetic Disease Cohorts Based on Human Phenotype Ontology Data with Cohort Analyzer
Cited by: 2
Author(s): Elena Rojano, José Córdoba-Caballero, Fernando M. Jabato, Diana Gallego, Mercedes Serrano, Belén Pérez, Álvaro Parés-Aguilar, James R. Perkins, Juan A. G. Ranea, Pedro Seoane Zonjic
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.688819

Genomic Analysis of Staphylococcus aureus Isolates Associated With Peracute Non-gangrenous or Gangrenous Mastitis and Comparison With Other Mastitis-Associated Staphylococcus aureus Isolates
Cited by: 7
Author(s): Silja Åvall-Jääskeläinen, Joanna Koort, Heli Simojoki, Suvi Taponen
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms22073532

Withholding of M-CSF Supplement Reprograms Macrophages to M2-Like via Endogenous CSF-1 Activation
Cited by: 9
Author(s): Yu‐Chih Chen, Yin‐Siew Lai, Yan‐Der Hsuuw, Ko‐Tung Chang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22094414

Integrative Analysis of Transcriptome and Metabolome Reveals Salt Stress Orchestrating the Accumulation of Specialized Metabolites in Lycium barbarum L. Fruit
Cited by: 10
Author(s): Shuang Lin, Shaohua Zeng, A Biao, Xiaoman Yang, Tianshun Yang, Guodi Zheng, Guilian Mao, Ying Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms22115448

MMP-9 Deletion Attenuates Arteriovenous Fistula Neointima through Reduced Perioperative Vascular Inflammation
Cited by: 10
Author(s): Yu Chung Shih, Po Yuan Chen, Tai Ming Ko, Po Hsun Huang, Hsu Ma, Der Cherng Tarng
Software Mentions: 2
Published: about 5 years ago

10.3389/fmed.2021.702638

Molecular Characteristics, Clinical Implication, and Cancer Immunity Interactions of Pyroptosis-Related Genes in Breast Cancer
Cited by: 35
Author(s): Dandan Xu, Zhipeng Ji, Lei Qiang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmed.2021.637803

Development and Multi-Data Set Verification of an RNA Binding Protein Signature for Prognosis Prediction in Glioma
Cited by: 2
Author(s): Chunpeng Sheng, Zhihua Chen, Jianwei Lei, Jianming Zhu, Shuxin Song
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221810080

Maize WRKY Transcription Factor ZmWRKY79 Positively Regulates Drought Tolerance through Elevating ABA Biosynthesis
Cited by: 29
Author(s): Faiza Gulzar, Jingye Fu, Chenying Zhu, Jie Yan, Xinglin Li, Tehseen Ahmad Meraj, Qing Shen, Beenish Hassan
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms221810154

Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing
Cited by: 11
Author(s): Tengfei Shen, Mengxuan Xu, Haoran Qi, Ying Feng, Zhangqi Yang, Meng Xu
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms221910604

MERTK+/hi M2c Macrophages Induced by Baicalin Alleviate Non-Alcoholic Fatty Liver Disease
Cited by: 11
Author(s): Júnior, Yin‐Siew Lai, Hoa Thi Minh Nguyen, Farrah P. Salmanida, Ko‐Tung Chang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12974-020-01834-0

Expression profiling of spinal cord dorsal horn in a rat model of complex regional pain syndrome type-I uncovers potential mechanisms mediating pain and neuroinflammation responses
Cited by: 25
Author(s): Ruixiang Chen, Chengyu Yin, Quanteng Hu, Boyu Liu, Yan Tai, Xiaoli Zheng, Yuanyuan Li, Jianqiao Fang
Software Mentions: 2
Published: about 6 years ago

10.3389/fmed.2021.649326

Three Immune-Related Prognostic mRNAs as Therapeutic Targets for Pancreatic Cancer
Cited by: 10
Author(s): Cangang Zhang, Yueji Zou, Yanan Zhu, Yi Liu, Hui Feng, F. Niu, Pengcheng He, Haibo Li
Software Mentions: 2
Published: about 5 years ago

10.1155/2019/2654296

A Novel Biomarker Based on miRNA to Predict the Prognosis of Muscle-Invasive Bladder Urothelial Carcinoma
Cited by: 4
Author(s): Yu Feng, Qingting Feng, Longhe Xu, Yiqing Jiang, Meng Fang, Xiaochen Shu
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.667136

Transcriptomic Analysis of the Effect of GAT-2 Deficiency on Differentiation of Mice Naïve T Cells Into Th1 Cells In Vitro
Cited by: 5
Author(s): Xueyan Ding, Yajie Chang, Siquan Wang, Dong Yan, Jiakui Yao, Guoqiang Zhu
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.683330

Single-Cell Profiling Reveals Transcriptional Signatures and Cell-Cell Crosstalk in Anti-PLA2R Positive Idiopathic Membranous Nephropathy Patients
Cited by: 17
Author(s): Jie Xu, Cong Shen, Wei Lin, Ting Meng, Joshua D. Ooi, Peter J. Eggenhuizen, Rong Tang, Gong Xiao, Peng Jin, Xiang Ding, Yangshuo Tang, Weilin Peng, Wannian Nie, Xiang Ao, Xiangcheng Xiao, Yong Zhong, Qiaoling Zhou
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.665442

Gene Expression Profiles Analyzed Using Integrating RNA Sequencing, and Microarray Reveals Increased Inflammatory Response, Proliferation, and Osteoclastogenesis in Pigmented Villonodular Synovitis
Cited by: 7
Author(s): Yang Zhao, Jiaoyun Lv, Hongwei Zhang, Jiawei Xie, Hui Dai, Xin Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12967-021-03053-4

Single-cell analysis of a tumor-derived exosome signature correlates with prognosis and immunotherapy response
Cited by: 11
Author(s): Jiani Wu, Dongqiang Zeng, Shimeng Zhi, Zilan Ye, Wenjun Qiu, Na Huang, Li Sun, Chunlin Wang, Zhenzhen Wu, Jianping Bin, Yulin Liao, Min Shi, Wangjun Liao
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2021.670971

Identification of Inflammation-Related Biomarker Lp-PLA2 for Patients With COPD by Comprehensive Analysis
Cited by: 21
Author(s): Mingming Deng, Yan Yin, Qin Zhang, Xiaoming Zhou, Gang Hou
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.700031

Discovery of Novel Biomarkers for Diagnosing and Predicting the Progression of Multiple Sclerosis Using TMT-Based Quantitative Proteomics
Cited by: 10
Author(s): Yijun Shi, Yaowei Ding, Guoge Li, Limin Wang, Rasha Alsamani Osman, Jialu Sun, Lingye Qian, Guanghui Zheng, Guojun Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2021.694801

Multi-Omics Analysis Showed the Clinical Value of Gene Signatures of C1QC+ and SPP1+ TAMs in Cervical Cancer
Cited by: 16
Author(s): Li Xiong, Qinghua Zhang, Gang Chen, Danfeng Luo
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.isci.2021.103102

MTDH associates with m6A RNA methylation and predicts cancer response for immune checkpoint treatment
Cited by: 3
Author(s): Fen Zhang, Huimei Huang, Yuexiang Qin, Chang‐Han Chen, Li She, Juncheng Wang, Donghai Huang, Qinglai Tang, Yong Liu, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2020.01709

Toxoplasma gondii Dense Granule Proteins 7, 14, and 15 Are Involved in Modification and Control of the Immune Response Mediated via NF-κB Pathway
Cited by: 21
Author(s): Fumie Ihara, Ragab M. Fereig, Yuu Himori, Kyohko Kameyama, Kosuke Umeda, Sadao Tanaka, Rina Ikeda, Masahiro Yamamoto, Yoshifumi Nishikawa
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.11950

TGF-β1 promotes colorectal cancer immune escape by elevating B7-H3 and B7-H4viathe miR-155/miR-143 axis
Cited by: 59
Author(s): Xinru Zhou, Yong Mao, Jianjie Zhu, Meng Fang, Qi Chen, Lihua Tao, Rui Li, Fengqing Fu, Cuiping Liu, Hu Y, Weipeng Wang, Hongjian Zhang, Dong Hua, Weichang Chen, Xueguang Zhang
Software Mentions: 2
Published: almost 10 years ago

10.18632/oncotarget.17081

Analysis ofBos taurusandSus scrofaX and Y chromosome transcriptome highlights reproductive driver genes
Cited by: 5
Author(s): Faheem Ahmed Khan, Hui Liu, Hao Zhou, Kai Wang, Muhammad Tahir ul Qamar, Nuruliarizki Shinta Pandupuspitasari, Shujun Zhang
Software Mentions: 2
Published: about 9 years ago

10.18632/oncotarget.22240

A core program of gene expression characterizes cancer metastases
Cited by: 16
Author(s): Franz Hartung, Yunguan Wang, Bruce J. Aronow, Georg F. Weber
Software Mentions: 2
Published: over 8 years ago

10.1001/jamanetworkopen.2020.35048

Molecular Diversity of Clinically Stable Human Kidney Allografts
Cited by: 8
Author(s): Dmitry Rychkov, Swastika Sur, Marina Sirota, Minnie M. Sarwal
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: almost 5 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: about 7 years ago

10.7150/jca.35854

Combining Bioinformatics and Experiments to Identify and Verify Key Genes with Prognostic Values in Endometrial Carcinoma
Cited by: 25
Author(s): Wenchao Zhang, Lingling Gao, Caixia Wang, Shuang Wang, Di Sun, Xiao Li, Miao Liu, Yue Qi, Juanjuan Liu, Bei Lin
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.643036

Diagnostic and Predictive Value of Immune-Related Genes in Crohn’s Disease
Cited by: 15
Author(s): Bing Yu, Yuqing Yin, Yanping Tang, Kang‐Lai Wei, Zhigang Pan, Kezhi Li, Xianwen Guo, Bang-li Hu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-021-00519-w

The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis)
Cited by: 16
Author(s): Fengchao Cui, Geli Taier, Manli Li, Xiaoxia Dai, Nan Hang, Xunzhong Zhang, Xiangfeng Wang, Kehua Wang
Software Mentions: 2
Published: about 5 years ago

10.7150/jca.46328

Development and validation of a DNA repair gene signature for prognosis prediction in Colon Cancer
Cited by: 9
Author(s): Xin Wang, Cong Tan, Min Ye, Xu Wang, Wei-Hung Weng, Meng Zhang, Shujuan Ni, Lei Wang, Dan Huang, Zhaohui Huang, Ming Xu, Weiqi Sheng
Software Mentions: 2
Published: over 6 years ago

10.1186/s41065-020-00142-0

Identification of potential crucial genes and key pathways in osteosarcoma
Cited by: 18
Author(s): Junwei Liu, Siyu Wu, Xiaoyu Xie, Ziming Wang, Qinghua Lei
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13073-020-00776-9

Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Cited by: 115
Author(s): Wei Lin, Pawan Noel, Erkut Borazanci, Jeeyun Lee, Albert Amini, In Woong Han, Jin Seok Heo, Gayle Jameson, Cory R. Fraser, Margaux Steinbach, Yanghee Woo, Yuman Fong, Derek Cridebring, Daniel D. Von Hoff, Joon Oh Park, Haiyong Han
Software Mentions: 2
Published: over 5 years ago

10.7150/jca.51141

6 Circulating miRNAs can be used as Non-invasive Biomarkers for the Detection of Cervical Lesions
Cited by: 6
Author(s): Ruoqi Ning, Silu Meng, Lin Wang, Yulin Jia, Fangxu Tang, Haiying Sun, Zhi Zhang, Chong Zhang, Xinran Fan, Bing Xiao, Chunhua Yang, Shuang Li
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22158089

Long-Term Fluoxetine Administration Causes Substantial Lipidome Alteration of the Juvenile Macaque Brain
Cited by: 8
Author(s): Anna Tkachev, Elena Stekolshchikova, Daniil Bobrovskiy, Nickolay Anikanov, Polina A Ogurtsova, Dong Ik Park, Anja K.E. Horn, Daria Petrova, Ekaterina Khrameeva, Mari S. Golub, Christoph W. Turck, Philipp Khaitovich
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.13379

Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palate
Cited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22095051

Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)
Cited by: 0
Author(s): Li Tian, Chen Xu, Jinzhi Xu, Jian Luo, Bin Yu, Xianzhi Meng, Chunfeng Li, Guoqing Pan, Zeyang Zhou
Software Mentions: 1
Published: about 5 years ago

10.3389/fmolb.2021.685088

Serum Extracellular Vesicle–Derived miR-124-3p as a Diagnostic and Predictive Marker for Early-Stage Acute Ischemic Stroke
Cited by: 15
Author(s): Qi Zheng, Yingying Zhao, Yu Chin Su, Bin Cao, Jianjun Yang, Qinghe Xing
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.17452

Prognostic value of DNA repair genes based on stratification of glioblastomas
Cited by: 11
Author(s): Kai Sun, Qiwen Duan, Gang Liu, Jing‐Min Lu
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.19699

RNA-seq based gene expression analysis of ovarian granulosa cells exposed to zearalenone in vitro: significance to steroidogenesis
Cited by: 19
Author(s): Guoliang Zhang, Ruiqian Zhang, Xiao‐Feng Sun, Shun‐Feng Cheng, Yufeng Wang, Chuanliang Ji, Yanzhong Feng, Jie Yu, Wei Ge, Yong Zhao, Shiduo Sun, Wei Shen, Lan Li
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.20902

MicroRNAs as predictors for CNS relapse of systemic diffuse large B-cell lymphoma
Cited by: 13
Author(s): Nir Pillar, Osnat Bairey, Neta Goldschmidt, Yakov Fellig, Yevgenia Rosenblat, Itchak Shehtman, Danielle Haguel, Pia Raanani, Noam Shomron, Tali Siegal
Software Mentions: 1
Published: almost 9 years ago

10.1111/jcmm.14758

Proteomics of epicardial adipose tissue in patients with heart failure
Cited by: 23
Author(s): Lei Zhao, Zongsheng Guo, Pan Wang, Meimei Zheng, Xiaoyan Yang, Ye Liu, Zheng Ma, Mulei Chen, Xinchun Yang
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.21872

A prognostic 4-gene expression signature for patients with HER2-negative breast cancer receiving taxane and anthracycline-based chemotherapy
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Author(s): Pu Cheng, Zhen Wang, Guoming Hu, Qi Huang, Mengjiao Han, Jian Huang
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2021.657950

ATP2C2 Has Potential to Define Tumor Microenvironment in Breast Cancer
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Author(s): Jiazhou Liu, Yu Wei, Yushen Wu, Jie Li, Jiazheng Sun, Guosheng Ren, Hongzhong Li
Software Mentions: 1
Published: about 5 years ago

10.7150/jca.50370

Increased IGFBP7 Expression Correlates with Poor Prognosis and Immune Infiltration in Gastric Cancer
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Author(s): Zhao Qi, Rulin Zhao, Conghua Song, Huan Wang, Jianfang Rong, Fangfei Wang, Lili Yan, Yanping Song, Yong Xie
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.679241

The abaI/abaR Quorum Sensing System Effects on Pathogenicity in Acinetobacter baumannii
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Author(s): Xiaoyu Sun, Zhaohui Ni, Jie Tang, Yue Ding, Xinlei Wang, Fan Li
Software Mentions: 1
Published: almost 5 years ago

10.3390/jpm11070649

Identification of Therapeutic Targets for the Selective Killing of HBV-Positive Hepatocytes
Cited by: 0
Author(s): Chien Jung Huang, Lily Wang, Yu Chao Wang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13018-021-02598-w

Salidroside promoted osteogenic differentiation of adipose-derived stromal cells through Wnt/β-catenin signaling pathway
Cited by: 4
Author(s): Xiaohua Li, Fu-ling Chen, Hong-lin Shen
Software Mentions: 1
Published: almost 5 years ago

10.1172/jci.insight.144863

IGF1R controls mechanosignaling in myofibroblasts required for pulmonary alveologenesis
Cited by: 12
Author(s): Hua He, John Snowball, Fei Sun, Cheng-Lun Na, Jeffrey A. Whitsett
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.01730

Cold Acclimation Improves the Desiccation Stress Resilience of Polar Strains of Klebsormidium (Streptophyta)
Cited by: 10
Author(s): Martin Rippin, Nadine Borchhardt, Ulf Karsten, Burkhard Becker
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.570903

Transcriptomic Profiling of Mouse Brain During Acute and Chronic Infections by Toxoplasma gondii Oocysts
Cited by: 8
Author(s): Rui-Si Hu, Jun-Jun He, Hany M. Elsheikha, Yang Zou, Muhammad Ehsan, Qiao-Ni Ma, Xingquan Zhu, Wei Cong
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11101225

Systems Level Analysis and Identification of Pathways and Key Genes Associated with Delirium
Cited by: 5
Author(s): Yukiko Takahashi, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.15230

Magnesium isoglycyrrhizinate prevents the nonalcoholic hepatic steatosis via regulating energy homeostasis
Cited by: 13
Author(s): Wenkai Jiang, Shiyu Xu, Huijie Guo, Li Lu, Jie Liu, Guangji Wang, Kun Hao
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.00341

Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
Cited by: 16
Author(s): Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine‐Radhouane Khouja, Claude Murat, Kerrie Barry, Erika Lindquist, Francis Martin, Silvia Perotto
Software Mentions: 1
Published: over 6 years ago

10.1186/s40104-019-0326-9

Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing
Cited by: 15
Author(s): Yuebo Zhang, Longchao Zhang, Jin Yue, Wei Xia, Ligang Wang, Xin Liu, Hongmei Gao, Xinhua Hou, Fuping Zhao, Hua Yan, Lixian Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13018-021-02386-6

Overexpression of CRABP2 inhibits dexamethasone-induced apoptosis in human osteoblast cells
Cited by: 4
Author(s): Haiping Zhang, Ziliang Yu, Farui Sun, Jin Jin
Software Mentions: 1
Published: about 5 years ago

10.1007/s10815-016-0745-x

Differentially expressed genes in preimplantation human embryos: potential candidate genes for blastocyst formation and implantation
Cited by: 13
Author(s): Erika Munch, Amy E.T. Sparks, Jesús González Bosquet, Lane K. Christenson, Eric J. Devor, Bradley J. Van Voorhis
Software Mentions: 1
Published: about 10 years ago

10.1111/jcmm.15390

p75NTR optimizes the osteogenic potential of human periodontal ligament stem cells by up‐regulating α1 integrin expression
Cited by: 3
Author(s): Jun Li, Manzhu Zhao, Yingying Wang, Ming Shen, Shuai Wang, Mengying Tang, Meng Li, Yuting Luo, Kun Yang, Xiang Wen
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.678661

Chronic Obstructive Pulmonary Disease Patients Have Increased Levels of Plasma Inflammatory Mediators Reported Upregulated in Severe COVID-19
Cited by: 6
Author(s): Nathalie Acevedo, Jose Miguel Escamilla-Gil, Héctor Espinoza, Ronald Regino, Jonathan Ramírez, Lucila Florez de Arco, Rodolfo Dennis, Carlos A. Torres‐Duque, Luis Caraballo
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.614773

Comprehensive Transcriptomic Analysis Reveals the Role of the Immune Checkpoint HLA-G Molecule in Cancers
Cited by: 8
Author(s): Huihui Xu, Jing Gan, Dan-Ping Xu, Lü Li, Wei‐Hua Yan
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12995-021-00308-0

Serum levels of miR-21-5p and miR-339-5p associate with occupational trichloroethylene hypersensitivity syndrome
Cited by: 4
Author(s): Wei Liu, Jian Zheng, Xiaohu Ren, Yuxuan Xie, Dafeng Lin, Peimao Li, Yuan Lv, Maggie Pui Man Hoi, Yanfang Zhang, Jianjun Li
Software Mentions: 1
Published: about 5 years ago

10.1155/2020/8862228

Expression and Prognostic Analysis of Integrins in Gastric Cancer
Cited by: 7
Author(s): Junfu Wang, Ye Wang, Siwen Zhang, Yeyang Chen, Yue Qiu, Shao-Yi Duan, Bopei Li, Junqiang Chen
Software Mentions: 1
Published: over 5 years ago

10.7150/jca.33737

Integrin-Linked Kinase Is Involved In the Proliferation and Invasion of Esophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Zhonghua Ning, Xiaozhong Zhu, Yinghua Jiang, Aidi Gao, Shitao Zou, Chao Gu, Chao He, Yihong Chen, Wei‐Qun Ding, Jundong Zhou
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.669893

Premature Senescence and Increased Oxidative Stress in the Thymus of Down Syndrome Patients
Cited by: 14
Author(s): Genni Enza Marcovecchio, Francesca Ferrua, Elena Fontana, Stefano Beretta, Marco Genua, Ileana Bortolomai, Anastasia Conti, Davide Montin, Maria Teresa Cascarano, Sonia Bergante, Veronica D’Oria, Alessandro Giamberti, Donato Amodio, Caterina Cancrini, Adriano Carotti, Raffaella Di Micco, Ivan Merelli, Marita Bosticardo, Anna Villa
Software Mentions: 1
Published: about 5 years ago

10.7150/jca.48661

Signature of gene aberrant alternative splicing events in pancreatic adenocarcinoma prognosis
Cited by: 5
Author(s): Jun Yao, Yuchen Tang, Bin Yi, Jian Yang, Yaqin Chai, Ning Yin, Zixiang Zhang, Yijun Wei, Dechun Li, Jian Zhou
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm8010073

Deduction of Novel Genes Potentially Involved in Keratinocytes of Type 2 Diabetes Using Next-Generation Sequencing and Bioinformatics Approaches
Cited by: 7
Author(s): En‐Shyh Lin, Wei‐An Chang, Yangyi Chen, Lu Wu, Yi Jen Chen, Po‐Lin Kuo
Software Mentions: 1
Published: over 7 years ago

10.1152/jn.00837.2018

Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad
Cited by: 5
Author(s): Thomas J. Vajtay, Akhil Bandi, Aman Upadhyay, Mavis R. Swerdel, Ronald P. Hart, Christian R. Lee, David J. Margolis
Software Mentions: 1
Published: about 7 years ago

10.7150/jca.39328

Effect of CELSR3 on the Cell Cycle and Apoptosis of Hepatocellular Carcinoma Cells
Cited by: 8
Author(s): Zucheng Xie, Yi‐Wu Dang, Huayu Wu, Rong‐Quan He, Jie Ma, Zhigang Peng, Minhua Rong, Zhekun Li, Jiapeng Yang, Yizhao Jiang, Gang Chen, Lihua Yang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-020-02539-x

Gut microbiota from coronary artery disease patients contributes to vascular dysfunction in mice by regulating bile acid metabolism and immune activation
Cited by: 29
Author(s): Honghong Liu, Ran Tian, Hui Wang, Siqin Feng, Hanyu Li, Ying Xiao, Xiaodong Luan, Zhiyu Zhang, Na Shi, Haitao Niu
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223