bioconductor: clusterProfiler | Projects

10.1186/s12885-021-08305-6

Characterization of alternative splicing events and prognostic signatures in breast cancer
Cited by: 1
Author(s): Pihua Han, Jianguo Zhu, Guang Feng, Zizhang Wang, Yanni Ding
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87420-7

Molecular mechanisms detected in yak lung tissue via transcriptome-wide analysis provide insights into adaptation to high altitudes
Cited by: 8
Author(s): Qian Ge, Yongbo Guo, Wangshan Zheng, Shengguo Zhao, Yuan Cai, Xuebin Qi
Software Mentions: 2
Published: over 3 years ago

10.1042/BSR20181441

Bioinformatics identification of crucial genes and pathways associated with hepatocellular carcinoma
Cited by: 34
Author(s): Xueren Gao, Xixi Wang, Shulong Zhang
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.103024

Systematic analysis of bacteriostatic mechanism of flavonoids using transcriptome and its therapeutic effect on vaginitis
Cited by: 10
Author(s): Zeyan Lin, Yanyan Lin, Zhengbing Zhang, Jin-Xing Shen, Caimei Yang, Meijiao Jiang, Yongming Hou
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: about 3 years ago

10.1042/BSR20190996

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools
Cited by: 14
Author(s): Weidong Jiang, Zhihua Ye
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20200743

The roles of MASPIN expression and subcellular localization in non-small cell lung cancer
Cited by: 10
Author(s): Xiao-fei Wang, Bo Liang, Daxiong Zeng, Wei Lei, Chen Cheng, Yanbin Chen, Jianan Huang, Ning Gu, Yehan Zhu
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20194429

Identification of cell division cycle 20 as a candidate biomarker and potential therapeutic target in bladder cancer using bioinformatics analysis
Cited by: 4
Author(s): Peilin Shen, Xue‐Jun He, Lan Lin, Ying‐Kai Hong, Mingen Lin
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20210308

RAGE-mediated functional DNA methylated modification contributes to cigarette smoke-induced airway inflammation in mice
Cited by: 5
Author(s): Ping Li, Tao Wang, Mei Chen, Jun Chen, Yongchun Shen, Lei Chen
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6679316

Ursolic Acid Regulates Intestinal Microbiota and Inflammatory Cell Infiltration to Prevent Ulcerative Colitis
Cited by: 14
Author(s): Qinsong Sheng, Fēi Li, Guanping Chen, Jiacheng Li, Jing Li, Yifan Wang, Yingyan Lu, Qun Li, Mingqian Li, Kequn Chai
Software Mentions: 2
Published: over 3 years ago

10.1042/BSR20204211

Exploration of the molecular targets and mechanisms of suxiao xintong dropping pills for myocardial infarction by network pharmacology method
Cited by: 3
Author(s): Da-qiu Chen, Yanqing Wu, Yixing Chen, Qiaoxing Chen, Xianhua Ye, Shuai Xu, Shunxiang Luo
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: about 5 years ago

10.3390/biom9020066

Genome-Wide Identification and Characterization of SQUAMOSA—Promoter-Binding Protein (SBP) Genes Involved in the Flowering Development of Citrus Clementina
Cited by: 15
Author(s): Ren‐Fang Zeng, Jingjing Zhou, Shengrui Liu, Zhi-Meng Gan, Jinzhi Zhang, Chun-Gen Hu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-89224-1

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
Cited by: 12
Author(s): Urminder Singh, Kyle M. Hernandez, Bruce J. Aronow, Eve Syrkin Wurtele
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: over 3 years ago

10.3390/biomedicines9091211

Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions
Cited by: 3
Author(s): Yan Yan, Tingting Gu, Stine Duelund Kaas Christensen, Junjing Su, Thomas Ravn Lassen, Marie Vognstoft Hjortbak, IJu Lo, Susanne Trillingsgaard Venø, Anna Zsófia Tóth, Ping Song, Morten S. Nielsen, Hans Erik Bøtker, Blagoy Blagoev, Kim Ryun Drasbek, Jørgen Kjems
Software Mentions: 2
Published: about 3 years ago

10.18632/aging.102319

Systematic profiling of alternative splicing events and splicing factors in left- and right-sided colon cancer
Cited by: 20
Author(s): Xiaoliang Huang, Jing Liu, Xiaokui Mo, Liu H, Wei Chen, Ling Huang, J Chen, Chao Tian, Yongsheng Meng, Guojun Wu, Wen Xie, Peter Fj, Liu Z, Weizhong Tang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 4 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90112-x

Multi‐omics analysis reveals the interaction between the complement system and the coagulation cascade in the development of endometriosis
Cited by: 45
Author(s): Liang Yu, Huaji Shen, Xiaohan Ren, Anqi Wang, Shu Zhu, Yafeng Zheng, Xiuli Wang
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92779-8

Untargeted metabolomics and transcriptomics identified glutathione metabolism disturbance and PCS and TMAO as potential biomarkers for ER stress in lung
Cited by: 5
Author(s): Zijing Wang, Peng Ma, Yisa Wang, Biyu Hou, Can Zhou, He Tian, Bowen Li, Guanghou Shui, Xiuying Yang, Guifen Qiang, Chengqian Yin, Guanhua Du
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.202984

A zinc finger protein gene signature enables bladder cancer treatment stratification
Cited by: 2
Author(s): Jiandong Zhang, Chen Zhang, Peng Cao, Xiang Zheng, Baozhong Yu, Haoyuan Cao, Zihao Gao, Feilong Zhang, Jiyuan Wu, Huawei Cao, Changzhen Hao, Zejia Sun, Wei Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2489175

An Integrated Transcriptomic and Proteomic Analysis Identifies Significant Novel Pathways for Henoch-Schönlein Purpura Nephritis Progression
Cited by: 4
Author(s): Biao Xie, Wei Zhang, Qi Zhang, Qiuju Zhang, Yupeng Wang, Lin Sun, Meina Liu, Ping Zhou
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.202590

Hsa_circ_0038383-mediated competitive endogenous RNA network in recurrent implantation failure
Cited by: 11
Author(s): Huishan Zhao, Lili Chen, Yinghua Shan, Gang Chen, Yongli Chu, Huangguan Dai, Xuemei Liu, Hongchu Bao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-020-07391-2

Development and validation of a novel pseudogene pair-based prognostic signature for prediction of overall survival in patients with hepatocellular carcinoma
Cited by: 6
Author(s): Yajuan Du, Ying Gao
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.597996

Systematic Construction and Validation of an RNA-Binding Protein-Associated Model for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 4
Author(s): Siyuan Tian, Jingyi Liu, Keshuai Sun, Yansheng Liu, Jiahao Yu, Shuoyi Ma, Miao Zhang, Jia Gui, Xia Zhou, Yulong Shang, Ying Han
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6898093

Genomic Expression Profiling and Bioinformatics Analysis of Chronic Recurrent Multifocal Osteomyelitis
Cited by: 3
Author(s): Kai Huang, Bingyuan Lin, Yiyang Liu, Qiaofeng Guo, Haiyong Ren
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/4951692

Comprehensive Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Biomarkers in Wilms’ Tumor
Cited by: 15
Author(s): Hong Zheng, Bai-Hui Li, Chang Liu, Jia Li, Fengting Liu
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8082697

Identification and Verification of Core Genes in Colorectal Cancer
Cited by: 22
Author(s): Houxi Xu, Yuzhu Ma, Jinzhi Zhang, Jialin Gu, Xianwen Jing, Lu Shen, Shunjun Fu, Jiege Huo
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/6650181

miRNA-mRNA Regulatory Network Reveals miRNAs in HCT116 in Response to Folic Acid Deficiency via Regulating Vital Genes of Endoplasmic Reticulum Stress Pathway
Cited by: 4
Author(s): Lin Lü, Hang Zhao, Jianjun Li, Kun Zhang, Xu Wang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/3650935

Sex Difference of Ribosome in Stroke-Induced Peripheral Immunosuppression by Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Jianqin Xie, Lu Yapeng, Hongli Sun, Lina Gao, Peipei Song, Zhijun Feng, Chongge You
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/8849415

Identification of Multiple Hub Genes and Pathways in Hepatocellular Carcinoma: A Bioinformatics Analysis
Cited by: 8
Author(s): Junwei Liu, Fang Han, Jianyi Ding, Xiaodong Liang, Jie Liu, Dongsheng Huang, Chengwu Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-98948-z

Tanshinone IIA affects the malignant growth of Cholangiocarcinoma cells by inhibiting the PI3K-Akt-mTOR pathway
Cited by: 5
Author(s): Huayuan Liu, Caiyun Liu, Mengya Wang, Dongxu Sun, Pengcheng Zhu, Ping Zhang, Xueying Tan, Guangjun Shi
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2020.566599

Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2
Cited by: 8
Author(s): Bingshan Wu, Weihong Wang, Haopeng Wang, Quanli Zou, Benxia Hu, Lei Ye, Yangchun Hu, Yuhuan Xie, Nali Huang, Qing Lan, Hongwei Cheng, Jun Dong, Xingliang Dai
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2021.652567

Analysis of Long Noncoding RNAs in Aila-Induced Non-Small Cell Lung Cancer Inhibition
Cited by: 2
Author(s): Lin Chen, Chen Wu, Heming Wang, Sinuo Chen, Danhui Ma, Ye Tao, Xingye Wang, Yanhe Luan, Tiedong Wang, Yan Shi, Guangqi Song, Yicheng Zhao, Xijun Dong, Bingmei Wang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/8951907

Baicalin Represses C/EBP<i>β</i> via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-99344-3

Transcriptomic analysis revealed increased expression of genes involved in keratinization in the tears of COVID-19 patients
Cited by: 8
Author(s): Leonardo Mastropasqua, Lisa Toto, Luigi Chiricosta, Francesca Diomede, Agnese Gugliandolo, Serena Silvestro, Guya Diletta Marconi, Bruna Sinjari, Jacopo Vecchiet, Francesco Cipollone, Damiano D’Ardes, Antonio Auricchio, Manuela Lanzini, Sergio Caputi, Rossella D’Aloisio, Emanuela Mazzon, Oriana Trubiani
Software Mentions: 2
Published: about 3 years ago

10.1186/s12885-021-07845-1

Inhibitory effect of sodium butyrate on colorectal cancer cells and construction of the related molecular network
Cited by: 16
Author(s): Yang Xi, Zhuang Jing, Wei Wu, Chun Zhang, Qi Qi, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: almost 4 years ago

10.18632/aging.102492

Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients
Cited by: 33
Author(s): Changshun Yang, Yu Zhang, Xiaoqin Xu, Weihua Li
Software Mentions: 2
Published: almost 5 years ago

10.1155/2018/2954208

Challenges in Stratifying the Molecular Variability of Patient-Derived Colon Tumor Xenografts
Cited by: 17
Author(s): Magdalena Cybulska, Tomasz Olesiński, Krzysztof Goryca, Katarzyna Paczkowska, Małgorzata Statkiewicz, Michał Kopczyński, Aleksandra Grochowska, Katarzyna Unrug-Bielawska, Anita Tyl-Bielicka, Marta Gajewska, Andrzej Mróz, Michalina Dąbrowska, Jakub Karczmarski, Agnieszka Paziewska, Leszek Zając, M. Bednarczyk, Michał Mikula, Jerzy Ostrowski
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41392-020-00382-6

Molecular characteristics of primary pulmonary lymphoepithelioma-like carcinoma based on integrated genomic analyses
Cited by: 18
Author(s): Bojiang Chen, Yu Zhang, Shenyu Dai, Ping Zhou, Wenxin Luo, Zhoufeng Wang, Xuping Chen, Cheng Peng, Guoya Zheng, Jing Ren, Xiaodong Yang, Weimin Li
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.627504

A New RBPs-Related Signature Predicts the Prognosis of Colon Adenocarcinoma Patients
Cited by: 16
Author(s): Kai‐Kai Chang, Chong Yuan, Xueguang Liu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.564306

Immune Cluster and PPI Network Analyses Identified CXCR3 as a Key Node of Immunoregulation in Head and Neck Cancer
Cited by: 2
Author(s): Ping Wang, Yanli Wang, Yufei Jiang, Minghong Li, Guang Li, Qiao Qiao
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12885-021-08434-y

Comprehensive analysis of suppressor of cytokine signaling proteins in human breast Cancer
Cited by: 9
Author(s): Mingyu Sun, Cheng Tang, Jun Li, Wenli Jiang, Haifeng Yu, Dong Fang, Chun Huang, Youlutuziayi Rixiati
Software Mentions: 2
Published: over 3 years ago

10.1155/2017/8529796

Microarray Analysis and Detection of MicroRNAs Associated with Chronic Thromboembolic Pulmonary Hypertension
Cited by: 17
Author(s): Ran Miao, Ying Wang, Jun Wan, Liubing Dong, Juanni Gong, Jifeng Li, Yunxia Zhang, Wenbo Pang, Zhenguo Zhai, Yuanhua Yang
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/9705950

Identification of Long Noncoding RNA Associated ceRNA Networks in Rosacea
Cited by: 3
Author(s): Lian Wang, Ruifeng Lu, Yujia Wang, Xiaoyun Wang, Dan Hao, Xiang Wen, Yanmei Li, Minghui Zeng, Xian Jiang
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.24060

Systematic morphological profiling of human gene and allele function via Cell Painting
Cited by: 110
Author(s): Mohammad Hossein Rohban, Shantanu Singh, Xiaoyun Wu, Julia B Berthet, Mark-Anthony Bray, Yashaswi Shrestha, Xaralabos Varelas, Jesse S. Boehm, Anne E. Carpenter
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/4139320

Upregulation of CEP55 Predicts Dismal Prognosis in Patients with Liver Cancer
Cited by: 13
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/5304578

RNA Sequencing for Gene Expression Profiles in Peripheral Blood Mononuclear Cells with Ankylosing Spondylitis RNA
Cited by: 3
Author(s): Dan Huang, Jian Liu, Yunxiang Cao, Lei Wan, Hui Jiang, Yue Sun, Jianting Wen
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/3962953

Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis
Cited by: 12
Author(s): Wanxue Hu, Qin Xie, Yicong Xu, Xin Tang, Hang Zhao
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/5520053

Genome-Wide MicroRNA Analysis of Peripheral Blood Mononuclear Cells Reveals Elevated miR-142-3p Expression as a Potential Biomarker for Secondary Syphilis
Cited by: 1
Author(s): Zhenghan Yang, Xiumin Yang, Zhaoyan Gan, Yuan Liang, Wei Liu, Chaozeng Si
Software Mentions: 2
Published: over 3 years ago

10.1186/s13287-020-01690-y

Comparative separation methods and biological characteristics of human placental and umbilical cord mesenchymal stem cells in serum-free culture conditions
Cited by: 21
Author(s): Yingying Xiao, Feng Chen, Fenghua Li, Qing Peng, Li Yang, Li Shao, Jiang Du, Yi Gao, Yifeng Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12885-020-07075-x

Immune-related genes in tumor-specific CD4+ and CD8+ T cells in colon cancer
Cited by: 15
Author(s): Yang Xi, Wei Wu, Yuefen Pan, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1807089

Aberrant Methylation and Differential Expression of SLC2A1, TNS4, GAPDH, ATP8A2, and CASZ1 Are Associated with the Prognosis of Lung Adenocarcinoma
Cited by: 16
Author(s): Xia Wang, Dongming Shi, Dan Zhao, Dongyan Hu
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/7170464

Long Noncoding RNA THAP9-AS1 and TSPOAP1-AS1 Provide Potential Diagnostic Signatures for Pediatric Septic Shock
Cited by: 6
Author(s): Yong Wu, Qi-Gai Yin, Xiaobao Zhang, Ping Zhu, Hengfei Luan, Ying Chen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2020.01504

Clinical Correlation of Wnt2 and COL8A1 With Colon Adenocarcinoma Prognosis
Cited by: 10
Author(s): Lihua Zhang, Xin Jiang, Yan Li, Qianqian Fan, Hongjuan Li, Lei Jin, Liqi Li, Yinzhe Jin, Ting Zhang, Yong Mao, Hua Dong
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/6676107

Plasma-Derived Exosomal hsa-miR-4488 and hsa-miR-1228-5p: Novel Biomarkers for Dermatomyositis-Associated Interstitial Lung Disease with Anti-Melanoma Differentiation-Associated Protein 5 Antibody-Positive Subset
Cited by: 10
Author(s): Danli Zhong, Caimei Wu, Dong Xu, Jingjing Bai, Qian Wang, Xiaofeng Zeng
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.581733

ITM2A as a Tumor Suppressor and Its Correlation With PD-L1 in Breast Cancer
Cited by: 7
Author(s): Rui Zhang, Tao Xu, Yu Xia, Zhi Wang, Xingrui Li, Wen Chen
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/9081852

Five-mRNA Signature for the Prognosis of Breast Cancer Based on the ceRNA Network
Cited by: 12
Author(s): Wenjie Shi, Duanmin Hu, Shan‐Yang Lin, Rui Zhuo
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/5561569

LC-MS/MS-Based Quantitative Proteomics Analysis of Different Stages of Non-Small-Cell Lung Cancer
Cited by: 15
Author(s): Murong Zhou, Yi Kong, Xiaobin Wang, Wen Li, Si Chen, Li Wang, Chengbin Wang, Qian Zhang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4612375

Association between APOBEC3H-Mediated Demethylation and Immune Landscape in Head and Neck Squamous Carcinoma
Cited by: 6
Author(s): Qin Liu, Yong Luo, Ruoyan Cao, Xue Pan, Xijuan Chen, Siyuan Zhang, Weilin Zhang, Jiaju Zhou, Bin Cheng, Xianyue Ren
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8062902

Comprehensive Study of Different Expressed Genes and Their Functional Modules in Anesthesia for Off-Pump Coronary Artery Bypass Grafting
Cited by: 1
Author(s): Hui Zhou, Min Wang, Zhihua Zhu
Software Mentions: 2
Published: over 4 years ago

10.1155/2018/8238496

Genome-Wide DNA Methylation Analysis during Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells
Cited by: 14
Author(s): Yangyang Cao, Haoqing Yang, Luyuan Jin, Juan Du, Zhipeng Fan
Software Mentions: 2
Published: about 6 years ago

10.3390/biology10080761

Identification of Potentially Related Genes and Mechanisms Involved in Skeletal Muscle Atrophy Induced by Excessive Exercise in Zebrafish
Cited by: 6
Author(s): Chaofen Sun, Zuoqiong Zhou, Zhanglin Chen, Runkang Zhu, Dong Kwon Yang, Xiyang Peng, Lan Zheng, Cui Tang
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: over 4 years ago

10.7150/thno.44782

Therapeutic potential of HERS spheroids in tooth regeneration
Cited by: 10
Author(s): Yufeng Duan, Xuebing Li, Sicheng Zhang, Shikai Wang, Tao Wang, Hong Chen, Yiqin Yang, Sixun Jia, Guoqing Chen, Weidong Tian
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40659-021-00334-6

Identification of blood-derived candidate gene markers and a new 7-gene diagnostic model for multiple sclerosis
Cited by: 13
Author(s): Xin Chen, Huilian Hou, Huimin Qiao, Haolong Fan, Tianyi Zhao, Mei Dong
Software Mentions: 2
Published: over 3 years ago

10.6026/97320630015480

Identification of putative drought-responsive genes in rice using gene co-expression analysis
Cited by: 22
Author(s): Yan-Mei Lv, Lei Xu, Komivi Dossa, Kun Zhou, Mei-Ling Zhu, Hongjun Xie, Tang Shan-jun, Yaying Yu, Ximing Guo, Bin Zhou
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2020.512877

A Novel Network Pharmacology Strategy to Decode Mechanism of Lang Chuang Wan in Treating Systemic Lupus Erythematosus
Cited by: 19
Author(s): Yao Gao, Kexin Wang, Peng Wang, Li Xiao, Jingjing Chen, Boya Zhou, Jun-Sheng Tian, Daogang Guan, Xuemei Qin, Aiping Lü
Software Mentions: 2
Published: about 4 years ago

10.3389/fphar.2021.697643

Melatonin Alleviates Renal Injury in Mouse Model of Sepsis
Cited by: 6
Author(s): Liyang Chen, Ze‐Guang Han, Z.B. Shi, Chao Liu, Qiulun Lu
Software Mentions: 2
Published: about 3 years ago

10.3389/fphar.2021.710692

Protective Property of Scutellarin Against Liver Injury Induced by Carbon Tetrachloride in Mice
Cited by: 8
Author(s): Zhimin Miao, Yongrong Lai, Yingying Zhao, Lingmin Chen, Jianeng Zhou, Chunyan Li, Yan Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2021.709548

YTHDF2 is a Potential Biomarker and Associated with Immune Infiltration in Kidney Renal Clear Cell Carcinoma
Cited by: 16
Author(s): Ganglin Su, Tianshu Liu, Xiaohong Han, Hao Sun, Wen’an Che, Kun Hu, Junwen Xiao, Yanfeng Li, Yuchen Liu, Wujiao Li, Hongbing Mei
Software Mentions: 2
Published: about 3 years ago

10.1093/bioinformatics/btaa1089

PC2P: parameter-free network-based prediction of protein complexes
Cited by: 17
Author(s): Sara Omranian, Aleksandra Angeleska, Zoran Nikoloski
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphar.2021.632225

Knockout of Formyl Peptide Receptor-1 Attenuates Cigarette Smoke–Induced Airway Inflammation in Mice
Cited by: 6
Author(s): Lijuan Gao, Ni Zeng, Zhicheng Yuan, Tao Wang, Lei Chen, Deqing Yang, Dan Xu, Chun Wan, Fuqiang Wen, Yongchun Shen
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2019.00408

Systems Biology Analysis of the Effect and Mechanism of Qi-Jing-Sheng-Bai Granule on Leucopenia in Mice
Cited by: 12
Author(s): Sai Tian, Pengli Huang, Yu Gu, Jian Yang, Ran Wu, Jing Zhao, Aijun Liu, Weidong Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2020.00387

NCAPG Is a Promising Therapeutic Target Across Different Tumor Types
Cited by: 30
Author(s): Cuicui Xiao, Jiao Gong, Yusheng Jie, Jing Cao, Zhongcheng Chen, Rong Li, Yutian Chong, Bo Hu, Qi Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2018.01570

High Throughput mRNA Sequencing Reveals Potential Therapeutic Targets of Tao-Hong-Si-Wu Decoction in Experimental Middle Cerebral Artery Occlusion
Cited by: 12
Author(s): Xianchun Duan, Lei Han, Daiyin Peng, Weidong Chen, Can Peng, Ling Xiao, Qiuyu Bao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphar.2021.651305

β-Caryophyllene Ameliorates MSU-Induced Gouty Arthritis and Inflammation Through Inhibiting NLRP3 and NF-κB Signal Pathway: In Silico and In Vivo
Cited by: 10
Author(s): Wan-Yang Li, Fan Yang, Jihua Chen, Guofeng Ren
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.103150

Genetic regulatory subnetworks and key regulating genes in rat hippocampus perturbed by prenatal malnutrition: implications for major brain disorders
Cited by: 59
Author(s): Jiaying Chen, Xinzhi Zhao, Li Cui, Guang He, Xinhui Wang, Fudi Wang, Shiwei Duan, Lin He, Qiang Li, Xiaodan Yu, Fuquan Zhang, Mingqing Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fphar.2021.723066

Glycogen Metabolism Predicts the Efficacy of Immunotherapy for Urothelial Carcinoma
Cited by: 1
Author(s): Yueming Zhang, Xuechun Li, Rui Zhou, Anqi Lin, Manming Cao, Qing Lyu, Peng Luo, Jian Zhang
Software Mentions: 2
Published: about 3 years ago

10.3389/fphar.2021.707930

An m6A-Related Prognostic Biomarker Associated With the Hepatocellular Carcinoma Immune Microenvironment
Cited by: 9
Author(s): Yingxi Du, Yarui Ma, Qing Zhu, Tongzheng Liu, Yuchen Jiao, Peng Yuan, Xiaobing Wang
Software Mentions: 2
Published: over 3 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223