bioconductor: clusterProfiler | Projects

10.3389/fgene.2021.633132

Methylome Patterns of Cattle Adaptation to Heat Stress
Cited by: 19
Author(s): Marcello Del Corvo, Barbara Lazzari, Emanuele Capra, Ludmilla Balbo Zavarez, Marco Milanesi, Yuri Tani Utsunomiya, Adam Taiti Harth Utsunomiya, Alessandra Stella, Guilherme de Paula Nogueira, José Fernando Garcia, Paolo Ajmone‐Marsan
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.589370

Wfs1 and Related Molecules as Key Candidate Genes in the Hippocampus of Depression
Cited by: 7
Author(s): Jing Yang, Chaoqin Chen, Xiaoyuan Jin, Lu Liu, Jiajia Lin, Xianhui Kang, Shengmei Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.711984

Regulatory Mechanism and Experimental Verification of Patchouli Alcohol on Gastric Cancer Cell Based on Network Pharmacology
Cited by: 8
Author(s): Yuzhi Song, Liang Chang, Xiaoyuan Wang, Bibo Tan, Jianbo Li, Jie Zhang, Fengbin Zhang, Lianmei Zhao, Guangjie Liu, Bingjie Huo
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.627459

Construction of Circular RNA–MicroRNA–Messenger RNA Regulatory Network of Recurrent Implantation Failure to Explore Its Potential Pathogenesis
Cited by: 6
Author(s): Jiahuan Luo, Li Zhu, Ning Zhou, Yuanyuan Zhang, Lirong Zhang, Ruopeng Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.655757

The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2021.750827

Bioinformatics Analysis Identified miR-584-5p and Key miRNA-mRNA Networks Involved in the Osteogenic Differentiation of Human Periodontal Ligament Stem Cells
Cited by: 2
Author(s): Chengze Wang, Lingling Dong, Ying Wang, Zhiwei Jiang, Jing Zhang, Guoli Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.580138

Construction of a MicroRNA-Based Nomogram for Prediction of Lung Metastasis in Breast Cancer Patients
Cited by: 4
Author(s): Leyi Zhang, Jun Pan, Zhen Wang, Chenghui Yang, Jian Huang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.587402

Transcriptional Profiling Reveals the Regulatory Role of DNER in Promoting Pancreatic Neuroendocrine Neoplasms
Cited by: 4
Author(s): Rui He, Wunai Zhang, Shuo Chen, Liu Yang, Wen‐Bin Yang, Junhui Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fendo.2020.611213

Integrated Analysis of Key Genes and Pathways Involved in Nonalcoholic Steatohepatitis Improvement After Roux-en-Y Gastric Bypass Surgery
Cited by: 4
Author(s): Chen Fu, Yong Zhou, Zida Wu, Yunze Li, Wenlong Zhou, Yong Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2018.00815

Acylated Ghrelin Supports the Ovarian Transcriptome and Follicles in the Mouse: Implications for Fertility
Cited by: 14
Author(s): Luba Sominsky, Jéferson Ferraz Goularte, Zane B. Andrews, Sarah J. Spencer
Software Mentions: 2
Published: over 7 years ago

10.3389/fncel.2021.703951

Single Cell Transcriptomics of Ependymal Cells Across Age, Region and Species Reveals Cilia-Related and Metal Ion Regulatory Roles as Major Conserved Ependymal Cell Functions
Cited by: 23
Author(s): Adam L. Macdonald, Brianna Lu, Maxime Caron, Nina Caporicci-Dinucci, Dale Hatrock, Kevin Petrecca, Guillaume Bourque, Jo Anne Stratton
Software Mentions: 2
Published: about 5 years ago

10.3389/fcimb.2021.713466

The Tick Microbiota Dysbiosis Promote Tick-Borne Pathogen Transstadial Transmission in a Babesia microti–Infected Mouse Model
Cited by: 8
Author(s): Nana Wei, Jie Cao, Houshuang Zhang, Yongzhi Zhou, Jinlin Zhou
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.617366

pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework
Cited by: 17
Author(s): Shihua Li, Kai Yu, Guandi Wu, Qingfeng Zhang, Panqin Wang, Jian Zheng, Zexian Liu, Jichao Wang, Xiaolan Gao, Han Cheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.710112

Inhibition of Postn Rescues Myogenesis Defects in Myotonic Dystrophy Type 1 Myoblast Model
Cited by: 2
Author(s): Xiaopeng Shen, Zhongxian Liu, Chunguang Wang, Xuezhen Feng, Jingyi Zhang, Meng Li, Lei Yang, Ao Wang, Chao Bi, Guoping Zhu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.715027

RNA-Binding Proteins CLK1 and POP7 as Biomarkers for Diagnosis and Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 4
Author(s): Xiuping Yang, Baoai Han, Zuhong He, Ya Ping Zhang, Kun Lin, Hongguo Su, Davood K Hosseini, Haiying Sun, Minlan Yang, Xiong Chen
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.705060

BRAF Mutation as a Potential Therapeutic Target for Checkpoint Inhibitors: A Comprehensive Analysis of Immune Microenvironment in BRAF Mutated Colon Cancer
Cited by: 15
Author(s): Shuyi Cen, Kun Liu, Yu Zheng, Jianzhen Shan, Chao Jing, Jiale Gao, Hongming Pan, Zhigang Bai, Zhen Liu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.658856

SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
Cited by: 8
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.694652

The Biological Function Delineated Across Pan-Cancer Levels Through lncRNA-Based Prognostic Risk Assessment Factors for Pancreatic Cancer
Cited by: 12
Author(s): Xu-Dong Tang, Mengyan Zhang, Liang Sun, Fei Xu, Xin Peng, Yan Zhang, Ying Deng, Shuliang Wu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fcell.2021.708819

Combined DNA Methylation and Transcriptomic Assessments to Determine a Prognostic Model for PD-1-Negative Hepatocellular Carcinoma
Cited by: 4
Author(s): Lixu Zhu, Wenzhi Guo
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.00310

Linking Phospho-Gonadotropin Regulated Testicular RNA Helicase (GRTH/DDX25) to Histone Ubiquitination and Acetylation Essential for Spermatid Development During Spermiogenesis
Cited by: 12
Author(s): Raghuveer Kavarthapu, Ramaswamy Anbazhagan, Ashish K. Sharma, Joseph Shiloach, Maria L. Dufau
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2021.729965

HIF1α Regulates IL17 Signaling Pathway Influencing Sensitivity of Taxane-Based Chemotherapy for Breast Cancer
Cited by: 3
Author(s): Huijuan Dai, Xiaonan Sheng, Yaohui Wang, Liheng Zhou, Yingsong Lin, Yueyao Du, Fan Yang, Rui Sha, Jing Peng, Lishuang Yao, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.103783

Gene expression profiles during postnatal development of the liver and pancreas in giant pandas
Cited by: 3
Author(s): Jinnan Ma, Fang Shen, Lei Chen, Honglin Wu, Yan Huang, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: about 6 years ago

10.3389/fcell.2020.581919

PAQR3 Inhibits Non-small Cell Lung Cancer Growth by Regulating the NF-κB/p53/Bax Axis
Cited by: 17
Author(s): Qiang Guo, Xixian Ke, Shixu Fang, Wen Gao, Yimin Song, Cheng Chen, Haojie Lu, Gang Xu
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2021.681240

Effect of ISM1 on the Immune Microenvironment and Epithelial-Mesenchymal Transition in Colorectal Cancer
Cited by: 12
Author(s): Yahong Wu, Xiubo Liang, Junjie Ni, Rongjie Zhao, Shengpeng Shao, Lu Si, Weidong Han, Liangliang Yu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.682060

Cyclophosphamide Exposure Causes Long-Term Detrimental Effect of Oocytes Developmental Competence Through Affecting the Epigenetic Modification and Maternal Factors’ Transcription During Oocyte Growth
Cited by: 10
Author(s): Weijie Yang, Yerong Ma, Jiamin Jin, Pengfei Ren, Hanjing Zhou, Shiqian Xu, Yingyi Zhang, Zhanhong Hu, Rong Yan, Yongdong Dai, Yinli Zhang, Songying Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms221810080

Maize WRKY Transcription Factor ZmWRKY79 Positively Regulates Drought Tolerance through Elevating ABA Biosynthesis
Cited by: 29
Author(s): Faiza Gulzar, Jingye Fu, Chenying Zhu, Jie Yan, Xinglin Li, Tehseen Ahmad Meraj, Qing Shen, Beenish Hassan
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.670890

Identify Function of WASL in Prognosis of Cervical Cancer Based on Omics Data
Cited by: 0
Author(s): Jian Hou, Chen Chen, Yingying Hu, Qiyong Gong, Lijuan Gan, Yu Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fbioe.2020.00737

A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
Cited by: 21
Author(s): Binsheng He, Yanxiang Zhang, Zhen Zhou, Bo Wang, Yuebin Liang, Jidong Lang, Huixin Lin, Pingping Bing, Lan Yu, Dejun Sun, Huaiqing Luo, Jialiang Yang, Geng Tian
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fbioe.2019.00364

Whole-Genome Methylation Analysis of Phenotype Discordant Monozygotic Twins Reveals Novel Epigenetic Perturbation Contributing to the Pathogenesis of Adolescent Idiopathic Scoliosis
Cited by: 17
Author(s): Gang Liu, Lianlei Wang, Xinyu Wang, Zihui Yan, Xinzhuang Yang, Mao Lin, Sen Liu, Yuzhi Zuo, Yuchen Niu, Sen Zhao, Yanyang Zhao, Jianguo Zhang, Jianxiong Shen, Yipeng Wang, Guixing Qiu, Zhihong Wu, Nan Wu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms221810154

Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing
Cited by: 11
Author(s): Tengfei Shen, Mengxuan Xu, Haoran Qi, Ying Feng, Zhangqi Yang, Meng Xu
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms221910604

MERTK+/hi M2c Macrophages Induced by Baicalin Alleviate Non-Alcoholic Fatty Liver Disease
Cited by: 11
Author(s): Júnior, Yin‐Siew Lai, Hoa Thi Minh Nguyen, Farrah P. Salmanida, Ko‐Tung Chang
Software Mentions: 2
Published: about 5 years ago

10.3389/fbioe.2020.00729

OASL as a Diagnostic Marker for Influenza Infection Revealed by Integrative Bioinformatics Analysis With XGBoost
Cited by: 7
Author(s): Yang Li, Hongjie Liu, Quan Xu, Rui Wu, Yi Zhang, Naizhe Li, Xiaozhou He, Mengjie Yang, Mifang Liang, Xuejun Ma
Software Mentions: 2
Published: over 6 years ago

10.3389/fbioe.2021.731247

Rapid Enabling of Gluconobacter oxydans Resistance to High D-Sorbitol Concentration and High Temperature by Microdroplet-Aided Adaptive Evolution
Cited by: 3
Author(s): Li Liu, Weizhu Zeng, Shiqin Yu, Jianghua Li, Jingwen Zhou
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fnagi.2020.605961

Co-expression Network Analysis Reveals Novel Genes Underlying Alzheimer’s Disease Pathogenesis
Cited by: 16
Author(s): Ruiting Hu, Qian Yu, Shao-Dan Zhou, Yuqing Yin, Rui-guang Hu, Hai-peng Lu, Bang-li Hu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnagi.2020.573764

Changes in Metabolism and Proteostasis Drive Aging Phenotype in Aplysia californica Sensory Neurons
Cited by: 8
Author(s): Nicholas S. Kron, Michael C. Schmale, Lynne A. Fieber
Software Mentions: 2
Published: about 6 years ago

10.3390/foods10020314

Peroxidized Linoleic Acid, 13-HPODE, Alters Gene Expression Profile in Intestinal Epithelial Cells
Cited by: 5
Author(s): Nisreen Faizo, Chandrakala Aluganti Narasimhulu, Anna Forsman, Shibu Yooseph, S. Parthasarathy
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12386

Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells
Cited by: 4
Author(s): Holly Stefen, Alexandra K. Suchowerska, Bei Jun Chen, Merryn Brettle, Jennifer Kuschelewski, Peter W. Gunning, Michael Janitz, Thomas Fath
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-019-5462-2

Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken
Cited by: 52
Author(s): Manman Shen, Tingting Li, Genxi Zhang, Pengfei Wu, Fuxiang Chen, Qiuhong Lou, Lan Chen, Xiufeng Yin, Tao Zhang, Jinyu Wang
Software Mentions: 2
Published: over 7 years ago

10.1186/s12974-020-01834-0

Expression profiling of spinal cord dorsal horn in a rat model of complex regional pain syndrome type-I uncovers potential mechanisms mediating pain and neuroinflammation responses
Cited by: 25
Author(s): Ruixiang Chen, Chengyu Yin, Quanteng Hu, Boyu Liu, Yan Tai, Xiaoli Zheng, Yuanyuan Li, Jianqiao Fang
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.597996

Systematic Construction and Validation of an RNA-Binding Protein-Associated Model for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 4
Author(s): Siyuan Tian, Jingyi Liu, Keshuai Sun, Yansheng Liu, Jiahao Yu, Shuoyi Ma, Miao Zhang, Jia Gui, Xia Zhou, Yulong Shang, Ying Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8548380

Idebenone-Activating Autophagic Degradation of α-Synuclein via Inhibition of AKT-mTOR Pathway in a SH-SY5Y-A53T Model of Parkinson’s Disease: A Network Pharmacological Approach
Cited by: 7
Author(s): Pei Kun He, Yu Gao, Feng‐Juan Lyu, Jia Ning Chen, Yu Hu Zhang, Kun Nie, Qing Xi Zhang, Rui Huang, Qingling Duan, Man Guo, Zhi Hua Liu, He Huang, Gui Xian, Li Juan Wang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/6664489

Study on the Molecular Mechanism of the Herbal Couple Sparganii Rhizoma-Curcumae Rhizoma in the Treatment of Lung Cancer Based on Network Pharmacology
Cited by: 4
Author(s): Shuguang Dai, Gaochenxi Zhang, Fangmin Zhao, Qijin Shu
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8861394

The Pharmacological Activity of the Wenjing Decoction in Recurrent Spontaneous Abortion
Cited by: 6
Author(s): Lixue Cao, Hui Chen, Yanxia Huang, Liudan Chen, Mengru Kang, Jing Liang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/5570968

Integrated Molecular Docking with Network Pharmacology to Reveal the Molecular Mechanism of Simiao Powder in the Treatment of Acute Gouty Arthritis
Cited by: 9
Author(s): Yihua Fan, Wei Liu, Yue Jin, Xu Hou, Xuewu Zhang, Hudan Pan, Hang Lü, Xiaojing Guo
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/6642600

Network Pharmacology-Based Approach to Comparatively Predict the Active Ingredients and Molecular Targets of Compound Xueshuantong Capsule and Hexuemingmu Tablet in the Treatment of Proliferative Diabetic Retinopathy
Cited by: 5
Author(s): Hongyan Yao, Danli Xin, Zongyi Zhan, Zijing Li
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.566599

Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2
Cited by: 8
Author(s): Bingshan Wu, Weihong Wang, Haopeng Wang, Quanli Zou, Benxia Hu, Lei Ye, Yangchun Hu, Yuhuan Xie, Nali Huang, Qing Lan, Hongwei Cheng, Jun Dong, Xingliang Dai
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.652567

Analysis of Long Noncoding RNAs in Aila-Induced Non-Small Cell Lung Cancer Inhibition
Cited by: 2
Author(s): Lin Chen, Chen Wu, Heming Wang, Sinuo Chen, Danhui Ma, Ye Tao, Xingye Wang, Yanhe Luan, Tiedong Wang, Yan Shi, Guangqi Song, Yicheng Zhao, Xijun Dong, Bingmei Wang
Software Mentions: 2
Published: over 5 years ago

10.1186/s40001-019-0381-x

Identification of key genes involved in myocardial infarction
Cited by: 21
Author(s): Linlin Qiu, Xueqing Liu
Software Mentions: 2
Published: over 7 years ago

10.1080/22221751.2021.1915184

Transcriptional signatures of human peripheral blood mononuclear cells can identify the risk of tuberculosis progression from latent infection among individuals with silicosis
Cited by: 4
Author(s): Qingwei Ruan, Qin Yang, Yixin Gao, Jing Wu, Siran Lin, Jingyu Zhou, Lingyun Shao, Sen Wang, Qianqian Liu, Yan Gao, Ning Jiang, Wenhong Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.6574

Physiological adaptations to sugar‐mimic alkaloids: Insights from Bombyx mori for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: about 6 years ago

10.1002/ece3.6508

Genetic adaptation of Tibetan poplar ( Populus szechuanica var. tibetica ) to high altitudes on the Qinghai–Tibetan Plateau
Cited by: 4
Author(s): Chenfei Zheng, Tan Li-zhi, Mengmeng Sang, Meixia Ye, Rongling Wu
Software Mentions: 2
Published: about 6 years ago

10.15252/embr.202050893

PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesis
Cited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.627504

A New RBPs-Related Signature Predicts the Prognosis of Colon Adenocarcinoma Patients
Cited by: 16
Author(s): Kai‐Kai Chang, Chong Yuan, Xueguang Liu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.564306

Immune Cluster and PPI Network Analyses Identified CXCR3 as a Key Node of Immunoregulation in Head and Neck Cancer
Cited by: 2
Author(s): Ping Wang, Yanli Wang, Yufei Jiang, Minghong Li, Guang Li, Qiao Qiao
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/2654296

A Novel Biomarker Based on miRNA to Predict the Prognosis of Muscle-Invasive Bladder Urothelial Carcinoma
Cited by: 4
Author(s): Yu Feng, Qingting Feng, Longhe Xu, Yiqing Jiang, Meng Fang, Xiaochen Shu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-018-5415-1

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Cited by: 8
Author(s): Frédéric Herault, Magalie Houée-Bigot, Élisabeth Baéza, Olivier Bouchez, Diane Esquerré, Christophe Klopp, Christian Diot
Software Mentions: 2
Published: over 7 years ago

10.1155/2019/4108474

Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer
Cited by: 32
Author(s): Wei Xu, Jun Lü, Qiang Zhao, Jun Wu, Jingyong Sun, Baohui Han, Xiaodong Zhao, Yani Kang
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/8866730

Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Chengquan Shen, Ting Xu, Yandong Sun, Liping Wang, Zhijuan Liang, Haitao Niu, Wei Jiao, Yonghua Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-018-5263-z

When pitch adds to volume: coregulation of transcript diversity predicts gene function
Cited by: 0
Author(s): Alejandro Cáceres, Juan R. González
Software Mentions: 2
Published: almost 8 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-01549-1

Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance
Cited by: 24
Author(s): Wei Yu Chen, Yu Wen, Shian-Ren Lin, Hsiu Lien Yeh, Kuo Jiang, Yow Sien Lin, Qingfu Zhang, Phui Ly Liew, Michael Hsiao, Jiaoti Huang, Yen Nien Liu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.01504

Clinical Correlation of Wnt2 and COL8A1 With Colon Adenocarcinoma Prognosis
Cited by: 10
Author(s): Lihua Zhang, Xin Jiang, Yan Li, Qianqian Fan, Hongjuan Li, Lei Jin, Liqi Li, Yinzhe Jin, Ting Zhang, Yong Mao, Hua Dong
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2020.581733

ITM2A as a Tumor Suppressor and Its Correlation With PD-L1 in Breast Cancer
Cited by: 7
Author(s): Rui Zhang, Tao Xu, Yu Xia, Zhi Wang, Xingrui Li, Wen Chen
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-01967-9

Identification and characterization of piperine synthase from black pepper, Piper nigrum L.
Cited by: 16
Author(s): Arianne Schnabel, Benedikt Athmer, Kerstin Manke, Frank Schumacher, Fernando Cotinguiba, Thomas Vogt
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-762

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development
Cited by: 54
Author(s): Sarita S. Paranjpe, U. Jacobi, Simon J. van Heeringen, Gert Jan C. Veenstra
Software Mentions: 2
Published: almost 13 years ago

10.1038/s42003-021-02557-5

Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
Cited by: 44
Author(s): Wei Guo, Yuchao Zhang, Shiwei Guo, Zi Mei, Huiping Liao, Hang Dong, Kai Wu, Haocheng Ye, Yuhang Zhang, Yong Zhu, Jing-Yu Lang, Landian Hu, Gang Jin, Xiangyin Kong
Software Mentions: 2
Published: about 5 years ago

10.1002/cti2.1131

Comparison of two human organoid models of lung and intestinal inflammation reveals Toll‐like receptor signalling activation and monocyte recruitment
Cited by: 24
Author(s): Shyam Sushama Jose, Marco De Zuani, Federico Tidu, Marcela Hortová-Kohoutková, Lucia Pazzagli, Giancarlo Forte, Roberta Spaccapelo, Teresa Zelante, Jan Frič
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10061410

Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: over 5 years ago

10.3390/cells10071838

Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: about 5 years ago

10.1016/j.stem.2021.01.003

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population
Cited by: 92
Author(s): Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B. Gaber, Sophie H. L. Austin, M. Masdeu, A. Edwards, Noelia Urbán, Anna Marciniak–Czochra, François Guillemot
Software Mentions: 2
Published: over 5 years ago

10.1038/s41422-020-0314-9

Elimination of senescent cells by β-galactosidase-targeted prodrug attenuates inflammation and restores physical function in aged mice
Cited by: 154
Author(s): Yusheng Cai, Huanhuan Zhou, Yinhua Zhu, Qi Sun, Yin Ji, Anqi Xue, Yuting Wang, Wenhan Chen, Xiaomei Yu, Longteng Wang, Han Chen, Cheng Li, Tuoping Luo, Hongkui Deng
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2019.10.131

Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells
Cited by: 48
Author(s): Assaf Magen, Jia Nie, Thomas Ciucci, Samira Tamoutounour, Yongmei Zhao, Monika Mehta, Bao Tran, Dorian B. McGavern, Sridhar Hannenhalli, Rémy Bosselut
Software Mentions: 2
Published: almost 7 years ago

10.1111/cpr.13085

Infusion of hESC derived Immunity‐and‐matrix regulatory cells improves cognitive ability in early‐stage AD mice
Cited by: 5
Author(s): Jing Liu, Zongren Hou, Jun Wu, Kailun Liu, Da Li, Tingting Gao, Wenjing Liu, Bin An, Yun Sun, Fan Mo, Liu Wang, Yukai Wang, Jie Hao, Baoyang Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fphar.2020.512877

A Novel Network Pharmacology Strategy to Decode Mechanism of Lang Chuang Wan in Treating Systemic Lupus Erythematosus
Cited by: 19
Author(s): Yao Gao, Kexin Wang, Peng Wang, Li Xiao, Jingjing Chen, Boya Zhou, Jun-Sheng Tian, Daogang Guan, Xuemei Qin, Aiping Lü
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2021.697643

Melatonin Alleviates Renal Injury in Mouse Model of Sepsis
Cited by: 6
Author(s): Liyang Chen, Ze‐Guang Han, Z.B. Shi, Chao Liu, Qiulun Lu
Software Mentions: 2
Published: about 5 years ago

10.3389/fphar.2021.710692

Protective Property of Scutellarin Against Liver Injury Induced by Carbon Tetrachloride in Mice
Cited by: 8
Author(s): Zhimin Miao, Yongrong Lai, Yingying Zhao, Lingmin Chen, Jianeng Zhou, Chunyan Li, Yan Wang
Software Mentions: 2
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223