bioconductor: clusterProfiler | Projects

10.3389/fonc.2021.655757

The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01549-1

Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance
Cited by: 24
Author(s): Wei Yu Chen, Yu Wen, Shian-Ren Lin, Hsiu Lien Yeh, Kuo Jiang, Yow Sien Lin, Qingfu Zhang, Phui Ly Liew, Michael Hsiao, Jiaoti Huang, Yen Nien Liu
Software Mentions: 2
Published: over 5 years ago

10.3390/jpm11080730

Evaluating, Filtering and Clustering Genetic Disease Cohorts Based on Human Phenotype Ontology Data with Cohort Analyzer
Cited by: 2
Author(s): Elena Rojano, José Córdoba-Caballero, Fernando M. Jabato, Diana Gallego, Mercedes Serrano, Belén Pérez, Álvaro Parés-Aguilar, James R. Perkins, Juan A. G. Ranea, Pedro Seoane Zonjic
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-021-01967-9

Identification and characterization of piperine synthase from black pepper, Piper nigrum L.
Cited by: 16
Author(s): Arianne Schnabel, Benedikt Athmer, Kerstin Manke, Frank Schumacher, Fernando Cotinguiba, Thomas Vogt
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-02557-5

Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
Cited by: 44
Author(s): Wei Guo, Yuchao Zhang, Shiwei Guo, Zi Mei, Huiping Liao, Hang Dong, Kai Wu, Haocheng Ye, Yuhang Zhang, Yong Zhu, Jing-Yu Lang, Landian Hu, Gang Jin, Xiangyin Kong
Software Mentions: 2
Published: almost 5 years ago

10.1002/cti2.1131

Comparison of two human organoid models of lung and intestinal inflammation reveals Toll‐like receptor signalling activation and monocyte recruitment
Cited by: 24
Author(s): Shyam Sushama Jose, Marco De Zuani, Federico Tidu, Marcela Hortová-Kohoutková, Lucia Pazzagli, Giancarlo Forte, Roberta Spaccapelo, Teresa Zelante, Jan Frič
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms221810080

Maize WRKY Transcription Factor ZmWRKY79 Positively Regulates Drought Tolerance through Elevating ABA Biosynthesis
Cited by: 29
Author(s): Faiza Gulzar, Jingye Fu, Chenying Zhu, Jie Yan, Xinglin Li, Tehseen Ahmad Meraj, Qing Shen, Beenish Hassan
Software Mentions: 2
Published: over 4 years ago

10.3390/cells10061410

Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10071838

Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.stem.2021.01.003

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population
Cited by: 92
Author(s): Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B. Gaber, Sophie H. L. Austin, M. Masdeu, A. Edwards, Noelia Urbán, Anna Marciniak–Czochra, François Guillemot
Software Mentions: 2
Published: about 5 years ago

10.1038/s41422-020-0314-9

Elimination of senescent cells by β-galactosidase-targeted prodrug attenuates inflammation and restores physical function in aged mice
Cited by: 154
Author(s): Yusheng Cai, Huanhuan Zhou, Yinhua Zhu, Qi Sun, Yin Ji, Anqi Xue, Yuting Wang, Wenhan Chen, Xiaomei Yu, Longteng Wang, Han Chen, Cheng Li, Tuoping Luo, Hongkui Deng
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2019.10.131

Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells
Cited by: 48
Author(s): Assaf Magen, Jia Nie, Thomas Ciucci, Samira Tamoutounour, Yongmei Zhao, Monika Mehta, Bao Tran, Dorian B. McGavern, Sridhar Hannenhalli, Rémy Bosselut
Software Mentions: 2
Published: over 6 years ago

10.1111/cpr.13085

Infusion of hESC derived Immunity‐and‐matrix regulatory cells improves cognitive ability in early‐stage AD mice
Cited by: 5
Author(s): Jing Liu, Zongren Hou, Jun Wu, Kailun Liu, Da Li, Tingting Gao, Wenjing Liu, Bin An, Yun Sun, Fan Mo, Liu Wang, Yukai Wang, Jie Hao, Baoyang Hu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: almost 5 years ago

10.1186/s11658-018-0110-4

Systematic identification of the key candidate genes in breast cancer stroma
Cited by: 29
Author(s): Yanxia Wang, Hui Xu, Baoan Zhu, Qiu Zhen-ling, Lin Zx
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms221810154

Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing
Cited by: 11
Author(s): Tengfei Shen, Mengxuan Xu, Haoran Qi, Ying Feng, Zhangqi Yang, Meng Xu
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-020-07391-2

Development and validation of a novel pseudogene pair-based prognostic signature for prediction of overall survival in patients with hepatocellular carcinoma
Cited by: 6
Author(s): Yajuan Du, Ying Gao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41421-020-00238-x

Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans
Cited by: 27
Author(s): Tianbin Liu, Jie Li, Lei Yu, Hai Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41420-021-00542-9

Determination of the dynamic cellular transcriptional profiles during kidney development from birth to maturity in rats by single-cell RNA sequencing
Cited by: 6
Author(s): Fangrui Ding, Xiuying Tian, Jiali Mo, Botao Wang, Jun Zheng
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms221910604

MERTK+/hi M2c Macrophages Induced by Baicalin Alleviate Non-Alcoholic Fatty Liver Disease
Cited by: 11
Author(s): Júnior, Yin‐Siew Lai, Hoa Thi Minh Nguyen, Farrah P. Salmanida, Ko‐Tung Chang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12974-020-01834-0

Expression profiling of spinal cord dorsal horn in a rat model of complex regional pain syndrome type-I uncovers potential mechanisms mediating pain and neuroinflammation responses
Cited by: 25
Author(s): Ruixiang Chen, Chengyu Yin, Quanteng Hu, Boyu Liu, Yan Tai, Xiaoli Zheng, Yuanyuan Li, Jianqiao Fang
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers12092573

N-MYC Downstream Regulated Gene 4 (NDRG4), a Frequent Downregulated Gene through DNA Hypermethylation, plays a Tumor Suppressive Role in Esophageal Adenocarcinoma
Cited by: 5
Author(s): Long‐Long Cao, Tingsong Hu, Heng Lu, Dunfa Peng
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13030489

Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells
Cited by: 5
Author(s): Claire D. James, Siddharth Saini, Fatmata Sesay, Kevin Ko, Jessica Felthousen-Rusbasan, Audra N. Iness, Tara J. Nulton, Brad E. Windle, Mikhail G. Dozmorov, Iain M. Morgan, Larisa Litovchick
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.103547

FGF2-induced PI3K/Akt signaling evokes greater proliferation and adipogenic differentiation of human adipose stem cells from breast than from abdomen or thigh
Cited by: 3
Author(s): Guan-Ming Lu, Yong-Xian Rong, Zheng Liang, Dong-Lin Hunag, Fengyao Wu, Yuju Ma, Zhizhai Luo, Xinheng Liu, Steven Mo, Hong-Mian Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.597996

Systematic Construction and Validation of an RNA-Binding Protein-Associated Model for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 4
Author(s): Siyuan Tian, Jingyi Liu, Keshuai Sun, Yansheng Liu, Jiahao Yu, Shuoyi Ma, Miao Zhang, Jia Gui, Xia Zhou, Yulong Shang, Ying Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers11010034

Antrocin Sensitizes Prostate Cancer Cells to Radiotherapy through Inhibiting PI3K/AKT and MAPK Signaling Pathways
Cited by: 31
Author(s): Yuan Chen, David T.W. Tzeng, Yiping Huang, Chun–Ming Lin, U‐Ging Lo, Chia‐Lin Wu, Lin H, Jer‐Tsong Hsieh, Chih‐Hsin Tang, Chih‐Ho Lai
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers13061397

Mutations Associated with No Durable Clinical Benefit to Immune Checkpoint Blockade in Non-S-Cell Lung Cancer
Cited by: 8
Author(s): Guangsheng Zhu, Dian Ren, Xi Liu, Ruifeng Shi, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade de Mello, Jun Chen, Song Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0249374

Tumor microenvironment characterization in cervical cancer identifies prognostic relevant gene signatures
Cited by: 6
Author(s): Linyu Peng, Gati Hayatullah, Haïyan Zhou, Shuzhen Chang, Liya Liu, Haifeng Qiu, Xiaoran Duan, Han Liang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0231234

The evolving systemic biomarker milieu in obese ZSF1 rat model of human cardiometabolic syndrome: Characterization of the model and cardioprotective effect of GDF15
Cited by: 7
Author(s): Marina Stolina, Xin Luo, Denise Dwyer, Chun-Ya Han, Rhonda Chen, Ying Zhang, Ye Xiong, Yinhong Chen, Jun Yin, Artem Shkumatov, Brandon Ason, Clarence Hale, Murielle M. Véniant
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0143377

Bioinformatics Analysis of the Effects of Tobacco Smoke on Gene Expression
Cited by: 16
Author(s): Chunhua Cao, Jianhua Chen, Chengqi Lyu, Jia Yu, Wei Zhao, Yi Wang, Derong Zou
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0063656

Protective Effects of Andrographolide Analogue AL-1 on ROS-Induced RIN-mβ Cell Death by Inducing ROS Generation
Cited by: 16
Author(s): Guang-Rong Yan, Hui-Hua Zhou, Yang Wang, Yin Zhong, Zi-Lu Tan, Yuqiang Wang, Qing-Yu He
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0219013

Expression profiles of circRNAs and the potential diagnostic value of serum circMARK3 in human acute Stanford type A aortic dissection
Cited by: 19
Author(s): Chengming Tian, Xingming Tang, Xiyu Zhu, Qing Zhou, Yuting Guo, Rui Zhao, Dongjin Wang, Bing Gong
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0246610

Adherent and suspension baby hamster kidney cells have a different cytoskeleton and surface receptor repertoire
Cited by: 2
Author(s): Veronika Dill, Florian Pfaff, Aline Zimmer, Martin Beer, Michael Eschbaumer
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0190447

Network-based co-expression analysis for exploring the potential diagnostic biomarkers of metastatic melanoma
Cited by: 37
Author(s): Lixin Wang, Li Yang, Guanzhi Chen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0252906

A network pharmacology approach to determine the underlying mechanisms of action of Yishen Tongluo formula for the treatment of oligoasthenozoospermia
Cited by: 4
Author(s): Yangdi Chen, Fanggang Bi, Zi-Xue Sun
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12885-021-07845-1

Inhibitory effect of sodium butyrate on colorectal cancer cells and construction of the related molecular network
Cited by: 16
Author(s): Yang Xi, Zhuang Jing, Wei Wu, Chun Zhang, Qi Qi, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0220118

Molecular network-based identification of competing endogenous RNAs in bladder cancer
Cited by: 15
Author(s): Weidong Jiang, Pingcheng Yuan
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes11121457

Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations
Cited by: 3
Author(s): Shinji Ohsawa, Toshiaki Umemura, Tomoyoshi Terada, Yoshinori Muto
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1008275

The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Cited by: 48
Author(s): Heinrich Schäfer, Bertrand Beckert, Christian K. Frese, Wieland Steinchen, Aaron M. Nuss, Michael Beckstette, Ingo Hantke, Kristina Driller, Petra Sudzinová, Libor Krásný, Volkhard Kaever, Petra Dersch, Gert Bange, Daniel N. Wilson, Kürşad Turgay
Software Mentions: 2
Published: over 6 years ago

10.3390/genes12030341

Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant
Cited by: 12
Author(s): Lei Zhang, Haoyun Sun, Tao Xu, Tianye Shi, Zongyun Li, Wenqian Hou
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1008238

IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
Cited by: 2
Author(s): Gianfranco Politano, Alfredo Benso
Software Mentions: 2
Published: over 5 years ago

10.3390/plants10081690

A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity
Cited by: 4
Author(s): Woo‐Jong Hong, Jiang Xu, Seok-Hyun Choi, Yujin Kim, Suntae Kim, Jong‐Seong Jeon, Ki‐Hong Jung
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00299-021-02661-0

Protuberances are organized distinct regions of long-term callus: histological and transcriptomic analyses in kiwifruit
Cited by: 5
Author(s): Małgorzata Czernicka, Iwona Chłosta, Kinga Kęska, Małgorzata Kozieradzka-Kiszkurno, Mohib Abdullah, Marzena Popielarska-Konieczna
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.14416

An improvement in skeletal muscle mitochondrial capacity with short‐term aerobic training is associated with changes in Tribbles 1 expression
Cited by: 5
Author(s): Rick B. Vega, Bram Brouwers, Stephanie A. Parsons, Natalie Stephens, Maria F. Pino, Andrew Hodges, Fanchao Yi, Gongxin Yu, Richard E. Pratley, Steven R. Smith, Lauren M. Sparks
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.10746

Overexpressed PLAU and its potential prognostic value in head and neck squamous cell carcinoma
Cited by: 19
Author(s): Zhexuan Li, Chang‐Han Chen, Juncheng Wang, Ming Wei, Guancheng Liu, Yuexiang Qin, Li She, Yong Liu, Donghai Huang, Yongquan Tian, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6885

Elevated limb-bud and heart development (LBH) expression indicates poor prognosis and promotes gastric cancer cell proliferation and invasion via upregulating Integrin/FAK/Akt pathway
Cited by: 18
Author(s): Ruoxi Yu, Zhi Li, Chuang Zhang, Hongli Song, Mingming Deng, Liping Sun, Ling Xu, Xiaofang Che, Xuejun Hu, Xiujuan Qu, Yunpeng Liu, Ye Zhang
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.9704

miR-224, miR-147b and miR-31 associated with lymph node metastasis and prognosis for lung adenocarcinoma by regulating PRPF4B, WDR82 or NR3C2
Cited by: 12
Author(s): Yan Wang, Shengtao Shang, Kun Yu, Hongbin Sun, Wenrui Ma, Wei Zhao
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11488

Involvement of plasminogen activator inhibitor-1 and its related molecules in atrial fibrosis in patients with atrial fibrillation
Cited by: 1
Author(s): Qiaoqiao Li, Ying-Yu Lai, Xiaoyan Gao, Xin Li, Chunyu Deng, Huiming Guo, Junfei Zhao, Hui Yang, Yu‐wen Xu, Shulin Wu, Yan Xue, Fang Rao
Software Mentions: 2
Published: about 5 years ago

10.1155/2019/2654296

A Novel Biomarker Based on miRNA to Predict the Prognosis of Muscle-Invasive Bladder Urothelial Carcinoma
Cited by: 4
Author(s): Yu Feng, Qingting Feng, Longhe Xu, Yiqing Jiang, Meng Fang, Xiaochen Shu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-021-08434-y

Comprehensive analysis of suppressor of cytokine signaling proteins in human breast Cancer
Cited by: 9
Author(s): Mingyu Sun, Cheng Tang, Jun Li, Wenli Jiang, Haifeng Yu, Dong Fang, Chun Huang, Youlutuziayi Rixiati
Software Mentions: 2
Published: about 5 years ago

10.1186/s13073-020-00776-9

Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Cited by: 115
Author(s): Wei Lin, Pawan Noel, Erkut Borazanci, Jeeyun Lee, Albert Amini, In Woong Han, Jin Seok Heo, Gayle Jameson, Cory R. Fraser, Margaux Steinbach, Yanghee Woo, Yuman Fong, Derek Cridebring, Daniel D. Von Hoff, Joon Oh Park, Haiyong Han
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11986

Screening and identification of NOTCH1, CDKN2A, and NOS3 as differentially expressed autophagy-related genes in erectile dysfunction
Cited by: 1
Author(s): Chao Luo, Xiongcai Zhou, Li Wang, Qinyu Zeng, Junhong Fan, Shuhua He, Haibo Zhang, Anyang Wei
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.9767

Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A
Cited by: 4
Author(s): Rong Cheng, Wei Li, Klarke M. Sample, Qiang Xu, Lin Liu, Fangfang Yu, Yingjie Nie, Xiangyan Zhang, Zhenhua Luo
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.7360

A 3-mRNA-based prognostic signature of survival in oral squamous cell carcinoma
Cited by: 22
Author(s): Ruoyan Cao, Qiqi Wu, Qiulan Li, Meiling Yao, Hongbo Zhou
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12885-020-07075-x

Immune-related genes in tumor-specific CD4+ and CD8+ T cells in colon cancer
Cited by: 15
Author(s): Yang Xi, Wei Wu, Yuefen Pan, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12957-020-01909-5

Combining texture features of whole slide images improves prognostic prediction of recurrence-free survival for cutaneous melanoma patients
Cited by: 7
Author(s): Yanbin Peng, Yunfeng Chu, Zhong Chen, Wen Zhou, Shengxiang Wan, Yingfeng Xiao, Youlong Zhang, Jialu Li
Software Mentions: 2
Published: about 6 years ago

10.1186/s12896-020-00667-2

Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures
Cited by: 8
Author(s): Dylan G. Chitwood, Qinghua Wang, Kathryn Elliott, Aiyana Bullock, Dwon Jordana, Zhigang Li, Cathy H. Wu, Sarah W. Harcum, Christopher Saski
Software Mentions: 2
Published: over 5 years ago

10.1186/s41065-020-00142-0

Identification of potential crucial genes and key pathways in osteosarcoma
Cited by: 18
Author(s): Junwei Liu, Siyu Wu, Xiaoyu Xie, Ziming Wang, Qinghua Lei
Software Mentions: 2
Published: almost 6 years ago

10.3390/v13091820

WRKY Transcription Factors in Cassava Contribute to Regulation of Tolerance and Susceptibility to Cassava Mosaic Disease through Stress Responses
Cited by: 7
Author(s): Warren Freeborough, Nikki L. Gentle, M. E. C. Rey
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.omtm.2020.06.008

Quantitative Hybrid Cardiac [18F]FDG-PET-MRI Images for Assessment of Cardiac Repair by Preconditioned Cardiosphere-Derived Cells
Cited by: 9
Author(s): Johannes Winkler, Dominika Lukovic, Julia Mester-Tonczar, Katrin Zlabinger, Alfred Gugerell, Noémi Pávó, András Jakab, Zsuzsanna Szankai, Denise Traxler, Cláudia Müller, Andreas Spannbauer, Martin Riesenhuber, Ena Hašimbegović, James Dawkins, Matthias Zimmermann, Hendrik Jan Ankersmit, Eduardo Marbán, Mariann Gyöngyösi
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12915-020-00792-6

Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human
Cited by: 27
Author(s): Shuli Liu, Ying Yu, Shengli Zhang, John B. Cole, Albert Tenesa, Ting Wang, T. G. McDaneld, Li Ma, George E. Liu, Lingzhao Fang
Software Mentions: 2
Published: almost 6 years ago

10.1002/1878-0261.12670

Mast cell‐based molecular subtypes and signature associated with clinical outcome in early‐stage lung adenocarcinoma
Cited by: 26
Author(s): Xuanwen Bao, Run Shi, Tianyu Zhao, Yanfang Wang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41438-021-00519-w

The genome of the warm-season turfgrass African bermudagrass (<i>Cynodon transvaalensis</i>)
Cited by: 16
Author(s): Fengchao Cui, Geli Taier, Manli Li, Xiaoxia Dai, Nan Hang, Xunzhong Zhang, Xiangfeng Wang, Kehua Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41438-020-0314-4

Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
Cited by: 34
Author(s): Lei Zhang, Yan Yu, Tianye Shi, Meng Kou, Jian Sun, Tao Xu, Qiang Li, Shaoyuan Wu, Qinghe Cao, Wenqian Hou, Zongyun Li
Software Mentions: 2
Published: about 6 years ago

10.1186/s10020-021-00342-y

The antioxidant N-acetylcysteine promotes immune response and inhibits epithelial-mesenchymal transition to alleviate pulmonary fibrosis in chronic obstructive pulmonary disease by suppressing the VWF/p38 MAPK axis
Cited by: 19
Author(s): Lihua Julie Zhu, Fei Xu, Xiuhua Kang, Jing Zhou, Qinqin Yao, Lefu Yang, Wei Zhang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s10020-020-00252-5

Identification of an RNA binding protein-related gene signature in hepatocellular carcinoma patients
Cited by: 8
Author(s): Li Wang, Na Zhou, Jing Qu, Man Jiang
Software Mentions: 2
Published: over 5 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: over 5 years ago

10.3390/nu10081047

Coffee Consumption and Whole-Blood Gene Expression in the Norwegian Women and Cancer Post-Genome Cohort
Cited by: 10
Author(s): Runa Borgund Barnung, Therese Haugdahl Nøst, Stine Marie Ulven, Guri Skeie, Anja Olsen
Software Mentions: 2
Published: almost 8 years ago

10.1128/mBio.00909-21

Persister Escherichia coli Cells Have a Lower Intracellular pH than Susceptible Cells but Maintain Their pH in Response to Antibiotic Treatment
Cited by: 41
Author(s): Olivia Goode, Ashley Smith, Ashraf Zarkan, Jehangir Cama, Brandon M. Invergo, Daaniyah Belgami, Santiago Caño-Muñiz, Jeremy Metz, Paul O’Neill, Aaron R. Jeffries, Isobel H. Norville, Jonathan David, David Summers, Stefano Pagliara
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.556749

Profiling Alternative 3′ Untranslated Regions in Sorghum using RNA-seq Data
Cited by: 4
Author(s): Min Tu, Yin Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.566599

Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2
Cited by: 8
Author(s): Bingshan Wu, Weihong Wang, Haopeng Wang, Quanli Zou, Benxia Hu, Lei Ye, Yangchun Hu, Yuhuan Xie, Nali Huang, Qing Lan, Hongwei Cheng, Jun Dong, Xingliang Dai
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.01504

Clinical Correlation of Wnt2 and COL8A1 With Colon Adenocarcinoma Prognosis
Cited by: 10
Author(s): Lihua Zhang, Xin Jiang, Yan Li, Qianqian Fan, Hongjuan Li, Lei Jin, Liqi Li, Yinzhe Jin, Ting Zhang, Yong Mao, Hua Dong
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/7182914

Integrative Network Analysis Revealed Genetic Impact of Pyruvate Kinase L/R on Hepatocyte Proliferation and Graft Survival after Liver Transplantation
Cited by: 2
Author(s): Zhengtao Liu, Junsheng Zhao, Qianqian Wang, Hai Zhu, Junjie Qian, Shuai Wang, Shuping Que, Feng Zhang, Shengyong Yin, Lin Zhou, Lei Geng, Shusen Zheng
Software Mentions: 2
Published: almost 5 years ago

10.1155/2021/6679316

Ursolic Acid Regulates Intestinal Microbiota and Inflammatory Cell Infiltration to Prevent Ulcerative Colitis
Cited by: 14
Author(s): Qinsong Sheng, Fēi Li, Guanping Chen, Jiacheng Li, Jing Li, Yifan Wang, Yingyan Lu, Qun Li, Mingqian Li, Kequn Chai
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.756471

Landscape of T Cells Transcriptional and Metabolic Modules During HIV Infection Based on Weighted Gene Co-expression Network Analysis
Cited by: 5
Author(s): Jianting Xu, Jing Pan, Xin Liu, Nan Zhang, Xinyue Zhang, Guoqing Wang, Wenyan Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fphar.2020.00387

NCAPG Is a Promising Therapeutic Target Across Different Tumor Types
Cited by: 30
Author(s): Cuicui Xiao, Jiao Gong, Yusheng Jie, Jing Cao, Zhongcheng Chen, Rong Li, Yutian Chong, Bo Hu, Qi Zhang
Software Mentions: 2
Published: about 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223