bioconductor: clusterProfiler | Projects

10.3389/fgene.2020.588499

SPOCK2 Serves as a Potential Prognostic Marker and Correlates With Immune Infiltration in Lung Adenocarcinoma
Cited by: 17
Author(s): Jinming Zhao, Ming Cheng, Junda Gai, Ruochen Zhang, Tian Du, Qingchang Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00254

Pan-Cancer Analysis Reveals the Functional Importance of Protein Lysine Modification in Cancer Development
Cited by: 21
Author(s): Li Chen, Yanyan Miao, Mengni Liu, Yanru Zeng, Gao Z, Di Peng, Bosu Hu, Xu Li, Yueyuan Zheng, Yu Xue, Zhixiang Zuo, Yubin Xie, Jian Ren
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2021.579900

Enhanced Expression of CNTD2/CCNP Predicts Poor Prognosis in Bladder Cancer Based on the GSE13507
Cited by: 0
Author(s): Mancheng Gong, Erlin Song, Guiying Huang, Wenjun Ni, Wenjing Dong, Runqiang Yuan
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.556749

Profiling Alternative 3′ Untranslated Regions in Sorghum using RNA-seq Data
Cited by: 4
Author(s): Min Tu, Yin Li
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-021-07665-4

Structural variations in papaya genomes
Cited by: 9
Author(s): Zhenyang Liao, Xunxiao Zhang, Shengcheng Zhang, Zhicong Lin, Xingtan Zhang, Ray Ming
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.698124

Visualization and Analysis of Gene Expression in Stanford Type A Aortic Dissection Tissue Section by Spatial Transcriptomics
Cited by: 13
Author(s): Yanhong Li, Ying Cao, Fen Liu, Qian Zhao, Dilare Adi, Qiang Huo, Zheng Liu, Junyi Luo, Binbin Fang, Ting Tian, Di Liu, Yi‐Ning Yang
Software Mentions: 2
Published: about 5 years ago

10.1186/s13046-019-1318-5

A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis
Cited by: 75
Author(s): Zhen Xiang, Jun Li, Shuzheng Song, Jiexuan Wang, Wei Cai, Wenjun Hu, Jun Ji, Zhenggang Zhu, Lu Zang, Ranlin Yan, Yingyan Yu
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2021.671392

Expression and Prognosis Analysis of SUMOylation Regulators in Oral Squamous Cell Carcinoma Based on High-Throughput Sequencing
Cited by: 8
Author(s): Yutong Meng, Xiaozhi Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.578002

CD52 Is a Prognostic Biomarker and Associated With Tumor Microenvironment in Breast Cancer
Cited by: 21
Author(s): Jianxin Wang, Guangchen Zhang, Yang Sui, Yang Zhong, Yinzhu Chu, Hailing Tang, Binbin Guo, Cong Zhang, Changjun Wu
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-018-4732-8

CoNVaQ: a web tool for copy number variation-based association studies
Cited by: 21
Author(s): Simon J. Larsen, Luísa Matos do Canto, Sílvia Regina Rogatto, Jan Baumbach
Software Mentions: 2
Published: about 8 years ago

10.1186/s13046-021-02066-7

The non-canonical mechanism of ER stress-mediated progression of prostate cancer
Cited by: 14
Author(s): Artem N. Pachikov, Ryan R. Gough, Caroline E. Christy, Mary E. Morris, Carol A. Casey, Chad A. LaGrange, Ganapati Bhat, Anatoly V. Kubyshkin, И. И. Фомочкина, Evgeniya Y. Zyablitskaya, Tatiana P. Makalish, Elena Petrovna Golubinskaya, Kateryna A. Davydenko, Sergey N. Eremenko, Jean-Jack M. Riethoven, Amith S. Maroli, Thomas Payne, Robert Powers, Alexander Y. Lushnikov, Amanda J. Macke, Armen Petrosyan
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.612196

Identification of a Ubiquitination-Related Gene Risk Model for Predicting Survival in Patients With Pancreatic Cancer
Cited by: 8
Author(s): Hao Zuo, Luojun Chen, Na Li, Qing Song
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00730

Differentially Expressed Genes Associated With Prognosis in Locally Advanced Lymph Node-Negative Prostate Cancer
Cited by: 20
Author(s): Elena A. Pudova, E. N. Lukyanova, K. M. Nyushko, Dmitry S. Mikhaylenko, Andrew R. Zaretsky, Anastasiya V. Snezhkina, М. В. Савватеева, Anastasiya A. Kobelyatskaya, Nataliya V. Melnikova, Н. Н. Волченко, Г. Д. Ефремов, Ksenia M. Klimina, А. А. Белова, Marina V. Kiseleva, А. Д. Каприн, B. Ya. Alekseev, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.726387

Establishment and Validation of a Genetic Label Associated With M2 Macrophage Infiltration to Predict Survival in Patients With Colon Cancer and to Assist in Immunotherapy
Cited by: 5
Author(s): Boyang Xu, Ziqi Peng, Guanyu Yan, Ningning Wang, Moye Chen, Xue Qing Yao, Mingjun Sun, Yi An
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2021.633132

Methylome Patterns of Cattle Adaptation to Heat Stress
Cited by: 19
Author(s): Marcello Del Corvo, Barbara Lazzari, Emanuele Capra, Ludmilla Balbo Zavarez, Marco Milanesi, Yuri Tani Utsunomiya, Adam Taiti Harth Utsunomiya, Alessandra Stella, Guilherme de Paula Nogueira, José Fernando Garcia, Paolo Ajmone‐Marsan
Software Mentions: 2
Published: about 5 years ago

10.3389/fbioe.2020.00737

A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
Cited by: 21
Author(s): Binsheng He, Yanxiang Zhang, Zhen Zhou, Bo Wang, Yuebin Liang, Jidong Lang, Huixin Lin, Pingping Bing, Lan Yu, Dejun Sun, Huaiqing Luo, Jialiang Yang, Geng Tian
Software Mentions: 2
Published: about 6 years ago

10.3389/fbioe.2019.00364

Whole-Genome Methylation Analysis of Phenotype Discordant Monozygotic Twins Reveals Novel Epigenetic Perturbation Contributing to the Pathogenesis of Adolescent Idiopathic Scoliosis
Cited by: 17
Author(s): Gang Liu, Lianlei Wang, Xinyu Wang, Zihui Yan, Xinzhuang Yang, Mao Lin, Sen Liu, Yuzhi Zuo, Yuchen Niu, Sen Zhao, Yanyang Zhao, Jianguo Zhang, Jianxiong Shen, Yipeng Wang, Guixing Qiu, Zhihong Wu, Nan Wu
Software Mentions: 2
Published: over 6 years ago

10.1002/jev2.12063

Proteomic profile of melanoma cell‐derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression
Cited by: 35
Author(s): Monika Pietrowska, Aneta Zebrowska, Marta Gawin, Łukasz Marczak, Prateek Sharma, Sujan Kumar Mondal, Justyna Mika, Joanna Polańska, Soldano Ferrone, John M. Kirkwood, Piotr Widłak, Theresa L. Whiteside
Software Mentions: 2
Published: over 5 years ago

10.3389/fbioe.2020.00729

OASL as a Diagnostic Marker for Influenza Infection Revealed by Integrative Bioinformatics Analysis With XGBoost
Cited by: 7
Author(s): Yang Li, Hongjie Liu, Quan Xu, Rui Wu, Yi Zhang, Naizhe Li, Xiaozhou He, Mengjie Yang, Mifang Liang, Xuejun Ma
Software Mentions: 2
Published: about 6 years ago

10.3389/fmolb.2021.652250

Identification of mRNA-, circRNA- and lncRNA- Associated ceRNA Networks and Potential Biomarkers for Preeclampsia From Umbilical Vein Endothelial Cells
Cited by: 15
Author(s): Dan Chen, Biwei He, Ping Zheng, Shuying Wang, Xueya Zhao, Jinyu Liu, Xingyu Yang, Weiwei Cheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fnmol.2019.00196

Differential Expression Profiles and Functional Prediction of Circular RNAs and Long Non-coding RNAs in the Hippocampus of Nrf2-Knockout Mice
Cited by: 15
Author(s): Runjiao Zhang, Yan Li, Qing Liu, Yanjing Gao, Juan Du, Jun Ma, Shao-Guang Sun, Lei Wang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fbioe.2021.731247

Rapid Enabling of Gluconobacter oxydans Resistance to High D-Sorbitol Concentration and High Temperature by Microdroplet-Aided Adaptive Evolution
Cited by: 3
Author(s): Li Liu, Weizhu Zeng, Shiqin Yu, Jianghua Li, Jingwen Zhou
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-019-5462-2

Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken
Cited by: 52
Author(s): Manman Shen, Tingting Li, Genxi Zhang, Pengfei Wu, Fuxiang Chen, Qiuhong Lou, Lan Chen, Xiufeng Yin, Tao Zhang, Jinyu Wang
Software Mentions: 2
Published: over 7 years ago

10.3389/fnagi.2020.605961

Co-expression Network Analysis Reveals Novel Genes Underlying Alzheimer’s Disease Pathogenesis
Cited by: 16
Author(s): Ruiting Hu, Qian Yu, Shao-Dan Zhou, Yuqing Yin, Rui-guang Hu, Hai-peng Lu, Bang-li Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fnagi.2020.573764

Changes in Metabolism and Proteostasis Drive Aging Phenotype in Aplysia californica Sensory Neurons
Cited by: 8
Author(s): Nicholas S. Kron, Michael C. Schmale, Lynne A. Fieber
Software Mentions: 2
Published: almost 6 years ago

10.3390/foods10020314

Peroxidized Linoleic Acid, 13-HPODE, Alters Gene Expression Profile in Intestinal Epithelial Cells
Cited by: 5
Author(s): Nisreen Faizo, Chandrakala Aluganti Narasimhulu, Anna Forsman, Shibu Yooseph, S. Parthasarathy
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12386

Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells
Cited by: 4
Author(s): Holly Stefen, Alexandra K. Suchowerska, Bei Jun Chen, Merryn Brettle, Jennifer Kuschelewski, Peter W. Gunning, Michael Janitz, Thomas Fath
Software Mentions: 2
Published: over 8 years ago

10.3389/fneur.2020.580997

Electroacupuncture Alleviates Mechanical Allodynia of a Rat Model of CRPS-I and Modulates Gene Expression Profiles in Dorsal Root Ganglia
Cited by: 7
Author(s): Jie Wang, Xiaoli Zheng, Boyu Liu, Chengyu Yin, Ruixiang Chen, Xiaojie Li, Yuanyuan Li, Huimin Nie, Danyi Zeng, Xiaofen He, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/8548380

Idebenone-Activating Autophagic Degradation of α-Synuclein via Inhibition of AKT-mTOR Pathway in a SH-SY5Y-A53T Model of Parkinson’s Disease: A Network Pharmacological Approach
Cited by: 7
Author(s): Pei Kun He, Yu Gao, Feng‐Juan Lyu, Jia Ning Chen, Yu Hu Zhang, Kun Nie, Qing Xi Zhang, Rui Huang, Qingling Duan, Man Guo, Zhi Hua Liu, He Huang, Gui Xian, Li Juan Wang
Software Mentions: 2
Published: almost 5 years ago

10.1155/2016/8346198

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types
Cited by: 13
Author(s): André Fonseca, Vandeclécio L. da Silva, Maira Christina Marques Fonseca, Isabella Tanus Job e Meira, Thayná E. da Silva, José Eduardo Kroll, André M. Ribeiro-dos-Santos, Cléber R. Freitas, Raimundo Furtado, Jorge E. de Souza, Beatriz Stransky, Sandro J. de Souza
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/6664489

Study on the Molecular Mechanism of the Herbal Couple Sparganii Rhizoma-Curcumae Rhizoma in the Treatment of Lung Cancer Based on Network Pharmacology
Cited by: 4
Author(s): Shuguang Dai, Gaochenxi Zhang, Fangmin Zhao, Qijin Shu
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/8861394

The Pharmacological Activity of the Wenjing Decoction in Recurrent Spontaneous Abortion
Cited by: 6
Author(s): Lixue Cao, Hui Chen, Yanxia Huang, Liudan Chen, Mengru Kang, Jing Liang
Software Mentions: 2
Published: over 5 years ago

10.3389/fnut.2021.724419

Mining RNA-Seq Data to Depict How Penicillium digitatum Shapes Its Transcriptome in Response to Nanoemulsion
Cited by: 2
Author(s): Ruopeng Yang, Xiu Chen, Qiang Huang, Chuying Chen, Kannan R.R. Rengasamy, Jinyin Chen, Chunpeng Wan
Software Mentions: 2
Published: almost 5 years ago

10.1155/2019/1429316

Transcriptomic Evidence of Adaptive Evolution of the Epiphytic Fern Asplenium nidus
Cited by: 6
Author(s): Jiao Zhang, Li Liu, Jiang-Ping Shu, Dongmei Jin, Hui Shen, Hongfeng Chen, Rui Zhang, Yue‐Hong Yan
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/5570968

Integrated Molecular Docking with Network Pharmacology to Reveal the Molecular Mechanism of Simiao Powder in the Treatment of Acute Gouty Arthritis
Cited by: 9
Author(s): Yihua Fan, Wei Liu, Yue Jin, Xu Hou, Xuewu Zhang, Hudan Pan, Hang Lü, Xiaojing Guo
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/6642600

Network Pharmacology-Based Approach to Comparatively Predict the Active Ingredients and Molecular Targets of Compound Xueshuantong Capsule and Hexuemingmu Tablet in the Treatment of Proliferative Diabetic Retinopathy
Cited by: 5
Author(s): Hongyan Yao, Danli Xin, Zongyi Zhan, Zijing Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.604319

Linc00665 Can Predict the Response to Cisplatin-Paclitaxel Neoadjuvant Chemotherapy for Breast Cancer Patients
Cited by: 9
Author(s): Huijuan Dai, Xiaonan Sheng, Rui Sha, Jing Peng, Fan Yang, Liheng Zhou, Yingsong Lin, Yaqian Xu, Shan Zhang, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.00829

High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.711984

Regulatory Mechanism and Experimental Verification of Patchouli Alcohol on Gastric Cancer Cell Based on Network Pharmacology
Cited by: 8
Author(s): Yuzhi Song, Liang Chang, Xiaoyuan Wang, Bibo Tan, Jianbo Li, Jie Zhang, Fengbin Zhang, Lianmei Zhao, Guangjie Liu, Bingjie Huo
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.655757

The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: over 5 years ago

10.1186/s40001-019-0381-x

Identification of key genes involved in myocardial infarction
Cited by: 21
Author(s): Linlin Qiu, Xueqing Liu
Software Mentions: 2
Published: about 7 years ago

10.1080/22221751.2021.1915184

Transcriptional signatures of human peripheral blood mononuclear cells can identify the risk of tuberculosis progression from latent infection among individuals with silicosis
Cited by: 4
Author(s): Qingwei Ruan, Qin Yang, Yixin Gao, Jing Wu, Siran Lin, Jingyu Zhou, Lingyun Shao, Sen Wang, Qianqian Liu, Yan Gao, Ning Jiang, Wenhong Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5415-1

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Cited by: 8
Author(s): Frédéric Herault, Magalie Houée-Bigot, Élisabeth Baéza, Olivier Bouchez, Diane Esquerré, Christophe Klopp, Christian Diot
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-018-5263-z

When pitch adds to volume: coregulation of transcript diversity predicts gene function
Cited by: 0
Author(s): Alejandro Cáceres, Juan R. González
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.6574

Physiological adaptations to sugar‐mimic alkaloids: Insights from Bombyx mori for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.6508

Genetic adaptation of Tibetan poplar ( Populus szechuanica var. tibetica ) to high altitudes on the Qinghai–Tibetan Plateau
Cited by: 4
Author(s): Chenfei Zheng, Tan Li-zhi, Mengmeng Sang, Meixia Ye, Rongling Wu
Software Mentions: 2
Published: almost 6 years ago

10.15252/embr.202050893

PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesis
Cited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/5925126

Metabonomic-Transcriptome Integration Analysis on Osteoarthritis and Rheumatoid Arthritis
Cited by: 6
Author(s): Ningyang Gao, Ding Li, Jian Pang, Yuxin Zheng, Yuelong Cao, Hongsheng Zhan, Yue Shi
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/4108474

Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer
Cited by: 32
Author(s): Wei Xu, Jun Lü, Qiang Zhao, Jun Wu, Jingyong Sun, Baohui Han, Xiaodong Zhao, Yani Kang
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/8866730

Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Chengquan Shen, Ting Xu, Yandong Sun, Liping Wang, Zhijuan Liang, Haitao Niu, Wei Jiao, Yonghua Wang
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-020-01549-1

Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance
Cited by: 24
Author(s): Wei Yu Chen, Yu Wen, Shian-Ren Lin, Hsiu Lien Yeh, Kuo Jiang, Yow Sien Lin, Qingfu Zhang, Phui Ly Liew, Michael Hsiao, Jiaoti Huang, Yen Nien Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-021-01967-9

Identification and characterization of piperine synthase from black pepper, Piper nigrum L.
Cited by: 16
Author(s): Arianne Schnabel, Benedikt Athmer, Kerstin Manke, Frank Schumacher, Fernando Cotinguiba, Thomas Vogt
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: about 5 years ago

10.1038/s42003-021-02557-5

Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
Cited by: 44
Author(s): Wei Guo, Yuchao Zhang, Shiwei Guo, Zi Mei, Huiping Liao, Hang Dong, Kai Wu, Haocheng Ye, Yuhang Zhang, Yong Zhu, Jing-Yu Lang, Landian Hu, Gang Jin, Xiangyin Kong
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2164-14-762

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development
Cited by: 54
Author(s): Sarita S. Paranjpe, U. Jacobi, Simon J. van Heeringen, Gert Jan C. Veenstra
Software Mentions: 2
Published: over 12 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 6 years ago

10.1002/cti2.1131

Comparison of two human organoid models of lung and intestinal inflammation reveals Toll‐like receptor signalling activation and monocyte recruitment
Cited by: 24
Author(s): Shyam Sushama Jose, Marco De Zuani, Federico Tidu, Marcela Hortová-Kohoutková, Lucia Pazzagli, Giancarlo Forte, Roberta Spaccapelo, Teresa Zelante, Jan Frič
Software Mentions: 2
Published: over 6 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-021-07688-x

Transcriptome analysis of ovary tissues from low- and high-yielding Changshun green-shell laying hens
Cited by: 10
Author(s): Ren Mu, Yi-yin Yu, Tuya Gegen, Di Wen, Fen Wang, Zhi Chen, Wenbin Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10061410

Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10071838

Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: about 5 years ago

10.1016/j.stem.2021.01.003

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population
Cited by: 92
Author(s): Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B. Gaber, Sophie H. L. Austin, M. Masdeu, A. Edwards, Noelia Urbán, Anna Marciniak–Czochra, François Guillemot
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41422-020-0314-9

Elimination of senescent cells by β-galactosidase-targeted prodrug attenuates inflammation and restores physical function in aged mice
Cited by: 154
Author(s): Yusheng Cai, Huanhuan Zhou, Yinhua Zhu, Qi Sun, Yin Ji, Anqi Xue, Yuting Wang, Wenhan Chen, Xiaomei Yu, Longteng Wang, Han Chen, Cheng Li, Tuoping Luo, Hongkui Deng
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12864-021-07497-2

Comparative transcriptomic analysis of thermally stressed Arabidopsis thaliana meiotic recombination mutants
Cited by: 3
Author(s): Jiyue Huang, Hongkuan Wang, Yingxiang Wang, Gregory P. Copenhaver
Software Mentions: 2
Published: over 5 years ago

10.7150/ijms.35984

Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: over 7 years ago

10.1016/j.celrep.2019.10.131

Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells
Cited by: 48
Author(s): Assaf Magen, Jia Nie, Thomas Ciucci, Samira Tamoutounour, Yongmei Zhao, Monika Mehta, Bao Tran, Dorian B. McGavern, Sridhar Hannenhalli, Rémy Bosselut
Software Mentions: 2
Published: over 6 years ago

10.1111/cpr.13085

Infusion of hESC derived Immunity‐and‐matrix regulatory cells improves cognitive ability in early‐stage AD mice
Cited by: 5
Author(s): Jing Liu, Zongren Hou, Jun Wu, Kailun Liu, Da Li, Tingting Gao, Wenjing Liu, Bin An, Yun Sun, Fan Mo, Liu Wang, Yukai Wang, Jie Hao, Baoyang Hu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: about 5 years ago

10.1186/s11658-018-0110-4

Systematic identification of the key candidate genes in breast cancer stroma
Cited by: 29
Author(s): Yanxia Wang, Hui Xu, Baoan Zhu, Qiu Zhen-ling, Lin Zx
Software Mentions: 2
Published: almost 8 years ago

10.3389/fonc.2020.597996

Systematic Construction and Validation of an RNA-Binding Protein-Associated Model for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 4
Author(s): Siyuan Tian, Jingyi Liu, Keshuai Sun, Yansheng Liu, Jiahao Yu, Shuoyi Ma, Miao Zhang, Jia Gui, Xia Zhou, Yulong Shang, Ying Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: about 5 years ago

10.1038/s41421-020-00238-x

Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans
Cited by: 27
Author(s): Tianbin Liu, Jie Li, Lei Yu, Hai Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41420-021-00542-9

Determination of the dynamic cellular transcriptional profiles during kidney development from birth to maturity in rats by single-cell RNA sequencing
Cited by: 6
Author(s): Fangrui Ding, Xiuying Tian, Jiali Mo, Botao Wang, Jun Zheng
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: about 6 years ago

10.3390/cancers12092573

N-MYC Downstream Regulated Gene 4 (NDRG4), a Frequent Downregulated Gene through DNA Hypermethylation, plays a Tumor Suppressive Role in Esophageal Adenocarcinoma
Cited by: 5
Author(s): Long‐Long Cao, Tingsong Hu, Heng Lu, Dunfa Peng
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13045-021-01125-y

Metabolic landscapes in sarcomas
Cited by: 5
Author(s): Richard Miallot, Franck Galland, Virginie Millet, Jean‐Yves Blay, Philippe Naquet
Software Mentions: 2
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223