bioconductor: clusterProfiler | Projects

10.1042/BSR20181441

Bioinformatics identification of crucial genes and pathways associated with hepatocellular carcinoma
Cited by: 34
Author(s): Xueren Gao, Xixi Wang, Shulong Zhang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.6885

Elevated limb-bud and heart development (LBH) expression indicates poor prognosis and promotes gastric cancer cell proliferation and invasion via upregulating Integrin/FAK/Akt pathway
Cited by: 18
Author(s): Ruoxi Yu, Zhi Li, Chuang Zhang, Hongli Song, Mingming Deng, Liping Sun, Ling Xu, Xiaofang Che, Xuejun Hu, Xiujuan Qu, Yunpeng Liu, Ye Zhang
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.10746

Overexpressed PLAU and its potential prognostic value in head and neck squamous cell carcinoma
Cited by: 19
Author(s): Zhexuan Li, Chang‐Han Chen, Juncheng Wang, Ming Wei, Guancheng Liu, Yuexiang Qin, Li She, Yong Liu, Donghai Huang, Yongquan Tian, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2019/1429316

Transcriptomic Evidence of Adaptive Evolution of the Epiphytic Fern Asplenium nidus
Cited by: 6
Author(s): Jiao Zhang, Li Liu, Jiang-Ping Shu, Dongmei Jin, Hui Shen, Hongfeng Chen, Rui Zhang, Yue‐Hong Yan
Software Mentions: 2
Published: almost 5 years ago

10.14814/phy2.14416

An improvement in skeletal muscle mitochondrial capacity with short‐term aerobic training is associated with changes in Tribbles 1 expression
Cited by: 5
Author(s): Rick B. Vega, Bram Brouwers, Stephanie A. Parsons, Natalie Stephens, Maria F. Pino, Andrew Hodges, Fanchao Yi, Gongxin Yu, Richard E. Pratley, Steven R. Smith, Lauren M. Sparks
Software Mentions: 2
Published: over 4 years ago

10.1007/s00299-021-02661-0

Protuberances are organized distinct regions of long-term callus: histological and transcriptomic analyses in kiwifruit
Cited by: 5
Author(s): Małgorzata Czernicka, Iwona Chłosta, Kinga Kęska, Małgorzata Kozieradzka-Kiszkurno, Mohib Abdullah, Marzena Popielarska-Konieczna
Software Mentions: 2
Published: almost 4 years ago

10.3390/plants10081690

A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity
Cited by: 4
Author(s): Woo‐Jong Hong, Jiang Xu, Seok-Hyun Choi, Yujin Kim, Suntae Kim, Jong‐Seong Jeon, Ki‐Hong Jung
Software Mentions: 2
Published: over 3 years ago

10.1042/BSR20190996

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools
Cited by: 14
Author(s): Weidong Jiang, Zhihua Ye
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20200743

The roles of MASPIN expression and subcellular localization in non-small cell lung cancer
Cited by: 10
Author(s): Xiao-fei Wang, Bo Liang, Daxiong Zeng, Wei Lei, Chen Cheng, Yanbin Chen, Jianan Huang, Ning Gu, Yehan Zhu
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20194429

Identification of cell division cycle 20 as a candidate biomarker and potential therapeutic target in bladder cancer using bioinformatics analysis
Cited by: 4
Author(s): Peilin Shen, Xue‐Jun He, Lan Lin, Ying‐Kai Hong, Mingen Lin
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008238

IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
Cited by: 2
Author(s): Gianfranco Politano, Alfredo Benso
Software Mentions: 2
Published: about 4 years ago

10.1042/BSR20210308

RAGE-mediated functional DNA methylated modification contributes to cigarette smoke-induced airway inflammation in mice
Cited by: 5
Author(s): Ping Li, Tao Wang, Mei Chen, Jun Chen, Yongchun Shen, Lei Chen
Software Mentions: 2
Published: over 3 years ago

10.1042/BSR20204211

Exploration of the molecular targets and mechanisms of suxiao xintong dropping pills for myocardial infarction by network pharmacology method
Cited by: 3
Author(s): Da-qiu Chen, Yanqing Wu, Yixing Chen, Qiaoxing Chen, Xianhua Ye, Shuai Xu, Shunxiang Luo
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/5925126

Metabonomic-Transcriptome Integration Analysis on Osteoarthritis and Rheumatoid Arthritis
Cited by: 6
Author(s): Ningyang Gao, Ding Li, Jian Pang, Yuxin Zheng, Yuelong Cao, Hongsheng Zhan, Yue Shi
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1008275

The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Cited by: 48
Author(s): Heinrich Schäfer, Bertrand Beckert, Christian K. Frese, Wieland Steinchen, Aaron M. Nuss, Michael Beckstette, Ingo Hantke, Kristina Driller, Petra Sudzinová, Libor Krásný, Volkhard Kaever, Petra Dersch, Gert Bange, Daniel N. Wilson, Kürşad Turgay
Software Mentions: 2
Published: over 4 years ago

10.3390/biom9020066

Genome-Wide Identification and Characterization of SQUAMOSA—Promoter-Binding Protein (SBP) Genes Involved in the Flowering Development of Citrus Clementina
Cited by: 15
Author(s): Ren‐Fang Zeng, Jingjing Zhou, Shengrui Liu, Zhi-Meng Gan, Jinzhi Zhang, Chun-Gen Hu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0220118

Molecular network-based identification of competing endogenous RNAs in bladder cancer
Cited by: 15
Author(s): Weidong Jiang, Pingcheng Yuan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0252906

A network pharmacology approach to determine the underlying mechanisms of action of Yishen Tongluo formula for the treatment of oligoasthenozoospermia
Cited by: 4
Author(s): Yangdi Chen, Fanggang Bi, Zi-Xue Sun
Software Mentions: 2
Published: over 3 years ago

10.3390/biomedicines9091211

Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions
Cited by: 3
Author(s): Yan Yan, Tingting Gu, Stine Duelund Kaas Christensen, Junjing Su, Thomas Ravn Lassen, Marie Vognstoft Hjortbak, IJu Lo, Susanne Trillingsgaard Venø, Anna Zsófia Tóth, Ping Song, Morten S. Nielsen, Hans Erik Bøtker, Blagoy Blagoev, Kim Ryun Drasbek, Jørgen Kjems
Software Mentions: 2
Published: about 3 years ago

10.7150/ijms.47555

Research on the potential mechanism of Chuanxiong Rhizoma on treating Diabetic Nephropathy based on network pharmacology
Cited by: 7
Author(s): Shanshan Hu, Siteng Chen, Zhilei Li, Yuhang Wang, Yong Wang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: over 3 years ago

10.1002/cti2.1131

Comparison of two human organoid models of lung and intestinal inflammation reveals Toll‐like receptor signalling activation and monocyte recruitment
Cited by: 24
Author(s): Shyam Sushama Jose, Marco De Zuani, Federico Tidu, Marcela Hortová-Kohoutková, Lucia Pazzagli, Giancarlo Forte, Roberta Spaccapelo, Teresa Zelante, Jan Frič
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-021-02557-5

Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
Cited by: 44
Author(s): Wei Guo, Yuchao Zhang, Shiwei Guo, Zi Mei, Huiping Liao, Hang Dong, Kai Wu, Haocheng Ye, Yuhang Zhang, Yong Zhu, Jing-Yu Lang, Landian Hu, Gang Jin, Xiangyin Kong
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-021-01967-9

Identification and characterization of piperine synthase from black pepper, Piper nigrum L.
Cited by: 16
Author(s): Arianne Schnabel, Benedikt Athmer, Kerstin Manke, Frank Schumacher, Fernando Cotinguiba, Thomas Vogt
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-01549-1

Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance
Cited by: 24
Author(s): Wei Yu Chen, Yu Wen, Shian-Ren Lin, Hsiu Lien Yeh, Kuo Jiang, Yow Sien Lin, Qingfu Zhang, Phui Ly Liew, Michael Hsiao, Jiaoti Huang, Yen Nien Liu
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/2489175

An Integrated Transcriptomic and Proteomic Analysis Identifies Significant Novel Pathways for Henoch-Schönlein Purpura Nephritis Progression
Cited by: 4
Author(s): Biao Xie, Wei Zhang, Qi Zhang, Qiuju Zhang, Yupeng Wang, Lin Sun, Meina Liu, Ping Zhou
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: almost 4 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8866730

Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Chengquan Shen, Ting Xu, Yandong Sun, Liping Wang, Zhijuan Liang, Haitao Niu, Wei Jiao, Yonghua Wang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2019/4108474

Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer
Cited by: 32
Author(s): Wei Xu, Jun Lü, Qiang Zhao, Jun Wu, Jingyong Sun, Baohui Han, Xiaodong Zhao, Yani Kang
Software Mentions: 2
Published: almost 6 years ago

10.7150/ijms.35984

Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: almost 6 years ago

10.15252/embr.202050893

PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesis
Cited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.6508

Genetic adaptation of Tibetan poplar ( Populus szechuanica var. tibetica ) to high altitudes on the Qinghai–Tibetan Plateau
Cited by: 4
Author(s): Chenfei Zheng, Tan Li-zhi, Mengmeng Sang, Meixia Ye, Rongling Wu
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.6574

Physiological adaptations to sugar‐mimic alkaloids: Insights from Bombyx mori for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: about 4 years ago

10.1080/22221751.2021.1915184

Transcriptional signatures of human peripheral blood mononuclear cells can identify the risk of tuberculosis progression from latent infection among individuals with silicosis
Cited by: 4
Author(s): Qingwei Ruan, Qin Yang, Yixin Gao, Jing Wu, Siran Lin, Jingyu Zhou, Lingyun Shao, Sen Wang, Qianqian Liu, Yan Gao, Ning Jiang, Wenhong Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40001-019-0381-x

Identification of key genes involved in myocardial infarction
Cited by: 21
Author(s): Linlin Qiu, Xueqing Liu
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/6642600

Network Pharmacology-Based Approach to Comparatively Predict the Active Ingredients and Molecular Targets of Compound Xueshuantong Capsule and Hexuemingmu Tablet in the Treatment of Proliferative Diabetic Retinopathy
Cited by: 5
Author(s): Hongyan Yao, Danli Xin, Zongyi Zhan, Zijing Li
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/5570968

Integrated Molecular Docking with Network Pharmacology to Reveal the Molecular Mechanism of Simiao Powder in the Treatment of Acute Gouty Arthritis
Cited by: 9
Author(s): Yihua Fan, Wei Liu, Yue Jin, Xu Hou, Xuewu Zhang, Hudan Pan, Hang Lü, Xiaojing Guo
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/8861394

The Pharmacological Activity of the Wenjing Decoction in Recurrent Spontaneous Abortion
Cited by: 6
Author(s): Lixue Cao, Hui Chen, Yanxia Huang, Liudan Chen, Mengru Kang, Jing Liang
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6664489

Study on the Molecular Mechanism of the Herbal Couple Sparganii Rhizoma-Curcumae Rhizoma in the Treatment of Lung Cancer Based on Network Pharmacology
Cited by: 4
Author(s): Shuguang Dai, Gaochenxi Zhang, Fangmin Zhao, Qijin Shu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/8548380

Idebenone-Activating Autophagic Degradation of α-Synuclein via Inhibition of AKT-mTOR Pathway in a SH-SY5Y-A53T Model of Parkinson’s Disease: A Network Pharmacological Approach
Cited by: 7
Author(s): Pei Kun He, Yu Gao, Feng‐Juan Lyu, Jia Ning Chen, Yu Hu Zhang, Kun Nie, Qing Xi Zhang, Rui Huang, Qingling Duan, Man Guo, Zhi Hua Liu, He Huang, Gui Xian, Li Juan Wang
Software Mentions: 2
Published: about 3 years ago

10.1155/2021/6898093

Genomic Expression Profiling and Bioinformatics Analysis of Chronic Recurrent Multifocal Osteomyelitis
Cited by: 3
Author(s): Kai Huang, Bingyuan Lin, Yiyang Liu, Qiaofeng Guo, Haiyong Ren
Software Mentions: 2
Published: almost 4 years ago

10.18632/aging.203154

Pan-cancer analysis reveals an immunological role and prognostic potential of PXN in human cancer
Cited by: 11
Author(s): Yun Chen, Zaizhu Han, Yan Xiao, Pan Shen, Li Tan, Shaohui Zhang, Qiong Liu, Zhengrong Gao, Jie Zhao, Ya‐Qiong Zhao, Yue Guo, Yun‐Zhi Feng
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4951692

Comprehensive Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Biomarkers in Wilms’ Tumor
Cited by: 15
Author(s): Hong Zheng, Bai-Hui Li, Chang Liu, Jia Li, Fengting Liu
Software Mentions: 2
Published: over 4 years ago

10.1002/2211-5463.12386

Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells
Cited by: 4
Author(s): Holly Stefen, Alexandra K. Suchowerska, Bei Jun Chen, Merryn Brettle, Jennifer Kuschelewski, Peter W. Gunning, Michael Janitz, Thomas Fath
Software Mentions: 2
Published: almost 7 years ago

10.3390/foods10020314

Peroxidized Linoleic Acid, 13-HPODE, Alters Gene Expression Profile in Intestinal Epithelial Cells
Cited by: 5
Author(s): Nisreen Faizo, Chandrakala Aluganti Narasimhulu, Anna Forsman, Shibu Yooseph, S. Parthasarathy
Software Mentions: 2
Published: almost 4 years ago

10.3389/fnagi.2020.573764

Changes in Metabolism and Proteostasis Drive Aging Phenotype in Aplysia californica Sensory Neurons
Cited by: 8
Author(s): Nicholas S. Kron, Michael C. Schmale, Lynne A. Fieber
Software Mentions: 2
Published: about 4 years ago

10.1186/s13046-019-1318-5

A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis
Cited by: 75
Author(s): Zhen Xiang, Jun Li, Shuzheng Song, Jiexuan Wang, Wei Cai, Wenjun Hu, Jun Ji, Zhenggang Zhu, Lu Zang, Ranlin Yan, Yingyan Yu
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8082697

Identification and Verification of Core Genes in Colorectal Cancer
Cited by: 22
Author(s): Houxi Xu, Yuzhu Ma, Jinzhi Zhang, Jialin Gu, Xianwen Jing, Lu Shen, Shunjun Fu, Jiege Huo
Software Mentions: 2
Published: over 4 years ago

10.3389/fbioe.2021.731247

Rapid Enabling of Gluconobacter oxydans Resistance to High D-Sorbitol Concentration and High Temperature by Microdroplet-Aided Adaptive Evolution
Cited by: 3
Author(s): Li Liu, Weizhu Zeng, Shiqin Yu, Jianghua Li, Jingwen Zhou
Software Mentions: 2
Published: about 3 years ago

10.3389/fbioe.2020.00729

OASL as a Diagnostic Marker for Influenza Infection Revealed by Integrative Bioinformatics Analysis With XGBoost
Cited by: 7
Author(s): Yang Li, Hongjie Liu, Quan Xu, Rui Wu, Yi Zhang, Naizhe Li, Xiaozhou He, Mengjie Yang, Mifang Liang, Xuejun Ma
Software Mentions: 2
Published: over 4 years ago

10.3389/fbioe.2019.00364

Whole-Genome Methylation Analysis of Phenotype Discordant Monozygotic Twins Reveals Novel Epigenetic Perturbation Contributing to the Pathogenesis of Adolescent Idiopathic Scoliosis
Cited by: 17
Author(s): Gang Liu, Lianlei Wang, Xinyu Wang, Zihui Yan, Xinzhuang Yang, Mao Lin, Sen Liu, Yuzhi Zuo, Yuchen Niu, Sen Zhao, Yanyang Zhao, Jianguo Zhang, Jianxiong Shen, Yipeng Wang, Guixing Qiu, Zhihong Wu, Nan Wu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fbioe.2020.00737

A Neural Network Framework for Predicting the Tissue-of-Origin of 15 Common Cancer Types Based on RNA-Seq Data
Cited by: 21
Author(s): Binsheng He, Yanxiang Zhang, Zhen Zhou, Bo Wang, Yuebin Liang, Jidong Lang, Huixin Lin, Pingping Bing, Lan Yu, Dejun Sun, Huaiqing Luo, Jialiang Yang, Geng Tian
Software Mentions: 2
Published: over 4 years ago

10.1186/s13045-021-01125-y

Metabolic landscapes in sarcomas
Cited by: 5
Author(s): Richard Miallot, Franck Galland, Virginie Millet, Jean‐Yves Blay, Philippe Naquet
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6650181

miRNA-mRNA Regulatory Network Reveals miRNAs in HCT116 in Response to Folic Acid Deficiency via Regulating Vital Genes of Endoplasmic Reticulum Stress Pathway
Cited by: 4
Author(s): Lin Lü, Hang Zhao, Jianjun Li, Kun Zhang, Xu Wang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/3650935

Sex Difference of Ribosome in Stroke-Induced Peripheral Immunosuppression by Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Jianqin Xie, Lu Yapeng, Hongli Sun, Lina Gao, Peipei Song, Zhijun Feng, Chongge You
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/8849415

Identification of Multiple Hub Genes and Pathways in Hepatocellular Carcinoma: A Bioinformatics Analysis
Cited by: 8
Author(s): Junwei Liu, Fang Han, Jianyi Ding, Xiaodong Liang, Jie Liu, Dongsheng Huang, Chengwu Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.684259

Development and Validation of a Ferroptosis-Related Gene Signature for Overall Survival Prediction in Lung Adenocarcinoma
Cited by: 26
Author(s): Qiang Tian, Yan Zhou, Lizhe Zhu, Huan Gao, Jin Yang
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.670890

Identify Function of WASL in Prognosis of Cervical Cancer Based on Omics Data
Cited by: 0
Author(s): Jian Hou, Chen Chen, Yingying Hu, Qiyong Gong, Lijuan Gan, Yu Xu
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.682060

Cyclophosphamide Exposure Causes Long-Term Detrimental Effect of Oocytes Developmental Competence Through Affecting the Epigenetic Modification and Maternal Factors’ Transcription During Oocyte Growth
Cited by: 10
Author(s): Weijie Yang, Yerong Ma, Jiamin Jin, Pengfei Ren, Hanjing Zhou, Shiqian Xu, Yingyi Zhang, Zhanhong Hu, Rong Yan, Yongdong Dai, Yinli Zhang, Songying Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.681240

Effect of ISM1 on the Immune Microenvironment and Epithelial-Mesenchymal Transition in Colorectal Cancer
Cited by: 12
Author(s): Yahong Wu, Xiubo Liang, Junjie Ni, Rongjie Zhao, Shengpeng Shao, Lu Si, Weidong Han, Liangliang Yu
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2020.581919

PAQR3 Inhibits Non-small Cell Lung Cancer Growth by Regulating the NF-κB/p53/Bax Axis
Cited by: 17
Author(s): Qiang Guo, Xixian Ke, Shixu Fang, Wen Gao, Yimin Song, Cheng Chen, Haojie Lu, Gang Xu
Software Mentions: 2
Published: about 4 years ago

10.3389/fcell.2021.729965

HIF1α Regulates IL17 Signaling Pathway Influencing Sensitivity of Taxane-Based Chemotherapy for Breast Cancer
Cited by: 3
Author(s): Huijuan Dai, Xiaonan Sheng, Yaohui Wang, Liheng Zhou, Yingsong Lin, Yueyao Du, Fan Yang, Rui Sha, Jing Peng, Lishuang Yao, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: about 3 years ago

10.3389/fcell.2020.00310

Linking Phospho-Gonadotropin Regulated Testicular RNA Helicase (GRTH/DDX25) to Histone Ubiquitination and Acetylation Essential for Spermatid Development During Spermiogenesis
Cited by: 12
Author(s): Raghuveer Kavarthapu, Ramaswamy Anbazhagan, Ashish K. Sharma, Joseph Shiloach, Maria L. Dufau
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.708819

Combined DNA Methylation and Transcriptomic Assessments to Determine a Prognostic Model for PD-1-Negative Hepatocellular Carcinoma
Cited by: 4
Author(s): Lixu Zhu, Wenzhi Guo
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.694652

The Biological Function Delineated Across Pan-Cancer Levels Through lncRNA-Based Prognostic Risk Assessment Factors for Pancreatic Cancer
Cited by: 12
Author(s): Xu-Dong Tang, Mengyan Zhang, Liang Sun, Fei Xu, Xin Peng, Yan Zhang, Ying Deng, Shuliang Wu
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.658856

SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
Cited by: 8
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.705060

BRAF Mutation as a Potential Therapeutic Target for Checkpoint Inhibitors: A Comprehensive Analysis of Immune Microenvironment in BRAF Mutated Colon Cancer
Cited by: 15
Author(s): Shuyi Cen, Kun Liu, Yu Zheng, Jianzhen Shan, Chao Jing, Jiale Gao, Hongming Pan, Zhigang Bai, Zhen Liu
Software Mentions: 2
Published: over 3 years ago

10.1155/2018/2954208

Challenges in Stratifying the Molecular Variability of Patient-Derived Colon Tumor Xenografts
Cited by: 17
Author(s): Magdalena Cybulska, Tomasz Olesiński, Krzysztof Goryca, Katarzyna Paczkowska, Małgorzata Statkiewicz, Michał Kopczyński, Aleksandra Grochowska, Katarzyna Unrug-Bielawska, Anita Tyl-Bielicka, Marta Gajewska, Andrzej Mróz, Michalina Dąbrowska, Jakub Karczmarski, Agnieszka Paziewska, Leszek Zając, M. Bednarczyk, Michał Mikula, Jerzy Ostrowski
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2021.715027

RNA-Binding Proteins CLK1 and POP7 as Biomarkers for Diagnosis and Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 4
Author(s): Xiuping Yang, Baoai Han, Zuhong He, Ya Ping Zhang, Kun Lin, Hongguo Su, Davood K Hosseini, Haiying Sun, Minlan Yang, Xiong Chen
Software Mentions: 2
Published: about 3 years ago

10.1155/2017/8529796

Microarray Analysis and Detection of MicroRNAs Associated with Chronic Thromboembolic Pulmonary Hypertension
Cited by: 17
Author(s): Ran Miao, Ying Wang, Jun Wan, Liubing Dong, Juanni Gong, Jifeng Li, Yunxia Zhang, Wenbo Pang, Zhenguo Zhai, Yuanhua Yang
Software Mentions: 2
Published: almost 8 years ago

10.1155/2021/6679316

Ursolic Acid Regulates Intestinal Microbiota and Inflammatory Cell Infiltration to Prevent Ulcerative Colitis
Cited by: 14
Author(s): Qinsong Sheng, Fēi Li, Guanping Chen, Jiacheng Li, Jing Li, Yifan Wang, Yingyan Lu, Qun Li, Mingqian Li, Kequn Chai
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2021.710112

Inhibition of Postn Rescues Myogenesis Defects in Myotonic Dystrophy Type 1 Myoblast Model
Cited by: 2
Author(s): Xiaopeng Shen, Zhongxian Liu, Chunguang Wang, Xuezhen Feng, Jingyi Zhang, Meng Li, Lei Yang, Ao Wang, Chao Bi, Guoping Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/9705950

Identification of Long Noncoding RNA Associated ceRNA Networks in Rosacea
Cited by: 3
Author(s): Lian Wang, Ruifeng Lu, Yujia Wang, Xiaoyun Wang, Dan Hao, Xiang Wen, Yanmei Li, Minghui Zeng, Xian Jiang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/4139320

Upregulation of CEP55 Predicts Dismal Prognosis in Patients with Liver Cancer
Cited by: 13
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/5304578

RNA Sequencing for Gene Expression Profiles in Peripheral Blood Mononuclear Cells with Ankylosing Spondylitis RNA
Cited by: 3
Author(s): Dan Huang, Jian Liu, Yunxiang Cao, Lei Wan, Hui Jiang, Yue Sun, Jianting Wen
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2021.617366

pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework
Cited by: 17
Author(s): Shihua Li, Kai Yu, Guandi Wu, Qingfeng Zhang, Panqin Wang, Jian Zheng, Zexian Liu, Jichao Wang, Xiaolan Gao, Han Cheng
Software Mentions: 2
Published: over 3 years ago

10.3389/fcimb.2021.713466

The Tick Microbiota Dysbiosis Promote Tick-Borne Pathogen Transstadial Transmission in a Babesia microti–Infected Mouse Model
Cited by: 8
Author(s): Nana Wei, Jie Cao, Houshuang Zhang, Yongzhi Zhou, Jinlin Zhou
Software Mentions: 2
Published: over 3 years ago

10.3389/fncel.2021.703951

Single Cell Transcriptomics of Ependymal Cells Across Age, Region and Species Reveals Cilia-Related and Metal Ion Regulatory Roles as Major Conserved Ependymal Cell Functions
Cited by: 23
Author(s): Adam L. Macdonald, Brianna Lu, Maxime Caron, Nina Caporicci-Dinucci, Dale Hatrock, Kevin Petrecca, Guillaume Bourque, Jo Anne Stratton
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/3962953

Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis
Cited by: 12
Author(s): Wanxue Hu, Qin Xie, Yicong Xu, Xin Tang, Hang Zhao
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/5520053

Genome-Wide MicroRNA Analysis of Peripheral Blood Mononuclear Cells Reveals Elevated miR-142-3p Expression as a Potential Biomarker for Secondary Syphilis
Cited by: 1
Author(s): Zhenghan Yang, Xiumin Yang, Zhaoyan Gan, Yuan Liang, Wei Liu, Chaozeng Si
Software Mentions: 2
Published: over 3 years ago

10.3389/fendo.2018.00815

Acylated Ghrelin Supports the Ovarian Transcriptome and Follicles in the Mouse: Implications for Fertility
Cited by: 14
Author(s): Luba Sominsky, Jéferson Ferraz Goularte, Zane B. Andrews, Sarah J. Spencer
Software Mentions: 2
Published: almost 6 years ago

10.3389/fendo.2020.611213

Integrated Analysis of Key Genes and Pathways Involved in Nonalcoholic Steatohepatitis Improvement After Roux-en-Y Gastric Bypass Surgery
Cited by: 4
Author(s): Chen Fu, Yong Zhou, Zida Wu, Yunze Li, Wenlong Zhou, Yong Wang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2020.587402

Transcriptional Profiling Reveals the Regulatory Role of DNER in Promoting Pancreatic Neuroendocrine Neoplasms
Cited by: 4
Author(s): Rui He, Wunai Zhang, Shuo Chen, Liu Yang, Wen‐Bin Yang, Junhui Li
Software Mentions: 2
Published: almost 4 years ago

10.3389/fgene.2020.580138

Construction of a MicroRNA-Based Nomogram for Prediction of Lung Metastasis in Breast Cancer Patients
Cited by: 4
Author(s): Leyi Zhang, Jun Pan, Zhen Wang, Chenghui Yang, Jian Huang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/1807089

Aberrant Methylation and Differential Expression of SLC2A1, TNS4, GAPDH, ATP8A2, and CASZ1 Are Associated with the Prognosis of Lung Adenocarcinoma
Cited by: 16
Author(s): Xia Wang, Dongming Shi, Dan Zhao, Dongyan Hu
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/7170464

Long Noncoding RNA THAP9-AS1 and TSPOAP1-AS1 Provide Potential Diagnostic Signatures for Pediatric Septic Shock
Cited by: 6
Author(s): Yong Wu, Qi-Gai Yin, Xiaobao Zhang, Ping Zhu, Hengfei Luan, Ying Chen
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/6676107

Plasma-Derived Exosomal hsa-miR-4488 and hsa-miR-1228-5p: Novel Biomarkers for Dermatomyositis-Associated Interstitial Lung Disease with Anti-Melanoma Differentiation-Associated Protein 5 Antibody-Positive Subset
Cited by: 10
Author(s): Danli Zhong, Caimei Wu, Dong Xu, Jingjing Bai, Qian Wang, Xiaofeng Zeng
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/9081852

Five-mRNA Signature for the Prognosis of Breast Cancer Based on the ceRNA Network
Cited by: 12
Author(s): Wenjie Shi, Duanmin Hu, Shan‐Yang Lin, Rui Zhuo
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2021.750827

Bioinformatics Analysis Identified miR-584-5p and Key miRNA-mRNA Networks Involved in the Osteogenic Differentiation of Human Periodontal Ligament Stem Cells
Cited by: 2
Author(s): Chengze Wang, Lingling Dong, Ying Wang, Zhiwei Jiang, Jing Zhang, Guoli Yang
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2020.627459

Construction of Circular RNA–MicroRNA–Messenger RNA Regulatory Network of Recurrent Implantation Failure to Explore Its Potential Pathogenesis
Cited by: 6
Author(s): Jiahuan Luo, Li Zhu, Ning Zhou, Yuanyuan Zhang, Lirong Zhang, Ruopeng Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/5561569

LC-MS/MS-Based Quantitative Proteomics Analysis of Different Stages of Non-Small-Cell Lung Cancer
Cited by: 15
Author(s): Murong Zhou, Yi Kong, Xiaobin Wang, Wen Li, Si Chen, Li Wang, Chengbin Wang, Qian Zhang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4612375

Association between APOBEC3H-Mediated Demethylation and Immune Landscape in Head and Neck Squamous Carcinoma
Cited by: 6
Author(s): Qin Liu, Yong Luo, Ruoyan Cao, Xue Pan, Xijuan Chen, Siyuan Zhang, Weilin Zhang, Jiaju Zhou, Bin Cheng, Xianyue Ren
Software Mentions: 2
Published: over 4 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223