bioconductor: clusterProfiler | Projects

10.3390/cells10071838

Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: about 5 years ago

Genetic, transcriptional, and regulatory landscape of monolignol biosynthesis pathway in Miscanthus × giganteus
Cited by: 10
Author(s): Xiaofei Zeng, Jiajing Sheng, Fenglin Zhu, Tianzi Wei, Lingling Zhao, Xiaohu Hu, Xianwei Zheng, Fangjian Zhou, Zhongli Hu, Youxiang Diao, Surong Jin
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.7360

A 3-mRNA-based prognostic signature of survival in oral squamous cell carcinoma
Cited by: 22
Author(s): Ruoyan Cao, Qiqi Wu, Qiulan Li, Meiling Yao, Hongbo Zhou
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.9767

Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A
Cited by: 4
Author(s): Rong Cheng, Wei Li, Klarke M. Sample, Qiang Xu, Lin Liu, Fangfang Yu, Yingjie Nie, Xiangyan Zhang, Zhenhua Luo
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.11986

Screening and identification of NOTCH1, CDKN2A, and NOS3 as differentially expressed autophagy-related genes in erectile dysfunction
Cited by: 1
Author(s): Chao Luo, Xiongcai Zhou, Li Wang, Qinyu Zeng, Junhong Fan, Shuhua He, Haibo Zhang, Anyang Wei
Software Mentions: 2
Published: about 5 years ago

10.1186/s13046-019-1318-5

A positive feedback between IDO1 metabolite and COL12A1 via MAPK pathway to promote gastric cancer metastasis
Cited by: 75
Author(s): Zhen Xiang, Jun Li, Shuzheng Song, Jiexuan Wang, Wei Cai, Wenjun Hu, Jun Ji, Zhenggang Zhu, Lu Zang, Ranlin Yan, Yingyan Yu
Software Mentions: 2
Published: about 7 years ago

10.18632/aging.203194

Shifting epigenetic contexts influence regulatory variation and disease risk
Cited by: 1
Author(s): Daniel Richard, Terence D. Capellini
Software Mentions: 2
Published: about 5 years ago

10.1042/BSR20202203

Developing a risk scoring system based on immune-related lncRNAs for patients with gastric cancer
Cited by: 5
Author(s): Yuzhi Wang, Yu Zhong, Yi Zhang, Chengwen Li
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11488

Involvement of plasminogen activator inhibitor-1 and its related molecules in atrial fibrosis in patients with atrial fibrillation
Cited by: 1
Author(s): Qiaoqiao Li, Ying-Yu Lai, Xiaoyan Gao, Xin Li, Chunyu Deng, Huiming Guo, Junfei Zhao, Hui Yang, Yu‐wen Xu, Shulin Wu, Yan Xue, Fang Rao
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20193101

Comparative analysis of inflammatory signature profiles in eosinophilic and noneosinophilic chronic rhinosinusitis with nasal polyposis
Cited by: 21
Author(s): Yao Yao, Chunguang Yang, Xing Yi, Shaobing Xie, Hong Sun
Software Mentions: 2
Published: over 6 years ago

10.1186/s13046-021-02066-7

The non-canonical mechanism of ER stress-mediated progression of prostate cancer
Cited by: 14
Author(s): Artem N. Pachikov, Ryan R. Gough, Caroline E. Christy, Mary E. Morris, Carol A. Casey, Chad A. LaGrange, Ganapati Bhat, Anatoly V. Kubyshkin, И. И. Фомочкина, Evgeniya Y. Zyablitskaya, Tatiana P. Makalish, Elena Petrovna Golubinskaya, Kateryna A. Davydenko, Sergey N. Eremenko, Jean-Jack M. Riethoven, Amith S. Maroli, Thomas Payne, Robert Powers, Alexander Y. Lushnikov, Amanda J. Macke, Armen Petrosyan
Software Mentions: 2
Published: almost 5 years ago

10.7717/peerj.9704

miR-224, miR-147b and miR-31 associated with lymph node metastasis and prognosis for lung adenocarcinoma by regulating PRPF4B, WDR82 or NR3C2
Cited by: 12
Author(s): Yan Wang, Shengtao Shang, Kun Yu, Hongbin Sun, Wenrui Ma, Wei Zhao
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20192436

Bioinformatics analysis of the potential biomarkers for acute respiratory distress syndrome
Cited by: 3
Author(s): Lin Liao, Liao Pinhu
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.6885

Elevated limb-bud and heart development (LBH) expression indicates poor prognosis and promotes gastric cancer cell proliferation and invasion via upregulating Integrin/FAK/Akt pathway
Cited by: 18
Author(s): Ruoxi Yu, Zhi Li, Chuang Zhang, Hongli Song, Mingming Deng, Liping Sun, Ling Xu, Xiaofang Che, Xuejun Hu, Xiujuan Qu, Yunpeng Liu, Ye Zhang
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10746

Overexpressed PLAU and its potential prognostic value in head and neck squamous cell carcinoma
Cited by: 19
Author(s): Zhexuan Li, Chang‐Han Chen, Juncheng Wang, Ming Wei, Guancheng Liu, Yuexiang Qin, Li She, Yong Liu, Donghai Huang, Yongquan Tian, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: over 5 years ago

10.1002/jev2.12063

Proteomic profile of melanoma cell‐derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression
Cited by: 35
Author(s): Monika Pietrowska, Aneta Zebrowska, Marta Gawin, Łukasz Marczak, Prateek Sharma, Sujan Kumar Mondal, Justyna Mika, Joanna Polańska, Soldano Ferrone, John M. Kirkwood, Piotr Widłak, Theresa L. Whiteside
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.14416

An improvement in skeletal muscle mitochondrial capacity with short‐term aerobic training is associated with changes in Tribbles 1 expression
Cited by: 5
Author(s): Rick B. Vega, Bram Brouwers, Stephanie A. Parsons, Natalie Stephens, Maria F. Pino, Andrew Hodges, Fanchao Yi, Gongxin Yu, Richard E. Pratley, Steven R. Smith, Lauren M. Sparks
Software Mentions: 2
Published: over 6 years ago

10.1007/s00299-021-02661-0

Protuberances are organized distinct regions of long-term callus: histological and transcriptomic analyses in kiwifruit
Cited by: 5
Author(s): Małgorzata Czernicka, Iwona Chłosta, Kinga Kęska, Małgorzata Kozieradzka-Kiszkurno, Mohib Abdullah, Marzena Popielarska-Konieczna
Software Mentions: 2
Published: over 5 years ago

10.3390/plants10081690

A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity
Cited by: 4
Author(s): Woo‐Jong Hong, Jiang Xu, Seok-Hyun Choi, Yujin Kim, Suntae Kim, Jong‐Seong Jeon, Ki‐Hong Jung
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1008238

IL6-mediated HCoV-host interactome regulatory network and GO/Pathway enrichment analysis
Cited by: 2
Author(s): Gianfranco Politano, Alfredo Benso
Software Mentions: 2
Published: almost 6 years ago

10.1042/BSR20181441

Bioinformatics identification of crucial genes and pathways associated with hepatocellular carcinoma
Cited by: 34
Author(s): Xueren Gao, Xixi Wang, Shulong Zhang
Software Mentions: 2
Published: almost 8 years ago

10.1042/BSR20190996

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools
Cited by: 14
Author(s): Weidong Jiang, Zhihua Ye
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pgen.1008275

The alarmones (p)ppGpp are part of the heat shock response of Bacillus subtilis
Cited by: 48
Author(s): Heinrich Schäfer, Bertrand Beckert, Christian K. Frese, Wieland Steinchen, Aaron M. Nuss, Michael Beckstette, Ingo Hantke, Kristina Driller, Petra Sudzinová, Libor Krásný, Volkhard Kaever, Petra Dersch, Gert Bange, Daniel N. Wilson, Kürşad Turgay
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20200743

The roles of MASPIN expression and subcellular localization in non-small cell lung cancer
Cited by: 10
Author(s): Xiao-fei Wang, Bo Liang, Daxiong Zeng, Wei Lei, Chen Cheng, Yanbin Chen, Jianan Huang, Ning Gu, Yehan Zhu
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20194429

Identification of cell division cycle 20 as a candidate biomarker and potential therapeutic target in bladder cancer using bioinformatics analysis
Cited by: 4
Author(s): Peilin Shen, Xue‐Jun He, Lan Lin, Ying‐Kai Hong, Mingen Lin
Software Mentions: 2
Published: about 6 years ago

10.1042/BSR20210308

RAGE-mediated functional DNA methylated modification contributes to cigarette smoke-induced airway inflammation in mice
Cited by: 5
Author(s): Ping Li, Tao Wang, Mei Chen, Jun Chen, Yongchun Shen, Lei Chen
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0220118

Molecular network-based identification of competing endogenous RNAs in bladder cancer
Cited by: 15
Author(s): Weidong Jiang, Pingcheng Yuan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0252906

A network pharmacology approach to determine the underlying mechanisms of action of Yishen Tongluo formula for the treatment of oligoasthenozoospermia
Cited by: 4
Author(s): Yangdi Chen, Fanggang Bi, Zi-Xue Sun
Software Mentions: 2
Published: about 5 years ago

10.1042/BSR20204211

Exploration of the molecular targets and mechanisms of suxiao xintong dropping pills for myocardial infarction by network pharmacology method
Cited by: 3
Author(s): Da-qiu Chen, Yanqing Wu, Yixing Chen, Qiaoxing Chen, Xianhua Ye, Shuai Xu, Shunxiang Luo
Software Mentions: 2
Published: about 5 years ago

10.1155/2016/8346198

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types
Cited by: 13
Author(s): André Fonseca, Vandeclécio L. da Silva, Maira Christina Marques Fonseca, Isabella Tanus Job e Meira, Thayná E. da Silva, José Eduardo Kroll, André M. Ribeiro-dos-Santos, Cléber R. Freitas, Raimundo Furtado, Jorge E. de Souza, Beatriz Stransky, Sandro J. de Souza
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0190447

Network-based co-expression analysis for exploring the potential diagnostic biomarkers of metastatic melanoma
Cited by: 37
Author(s): Lixin Wang, Li Yang, Guanzhi Chen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0246610

Adherent and suspension baby hamster kidney cells have a different cytoskeleton and surface receptor repertoire
Cited by: 2
Author(s): Veronika Dill, Florian Pfaff, Aline Zimmer, Martin Beer, Michael Eschbaumer
Software Mentions: 2
Published: over 5 years ago

10.3390/biom9020066

Genome-Wide Identification and Characterization of SQUAMOSA—Promoter-Binding Protein (SBP) Genes Involved in the Flowering Development of Citrus Clementina
Cited by: 15
Author(s): Ren‐Fang Zeng, Jingjing Zhou, Shengrui Liu, Zhi-Meng Gan, Jinzhi Zhang, Chun-Gen Hu
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0219013

Expression profiles of circRNAs and the potential diagnostic value of serum circMARK3 in human acute Stanford type A aortic dissection
Cited by: 19
Author(s): Chengming Tian, Xingming Tang, Xiyu Zhu, Qing Zhou, Yuting Guo, Rui Zhao, Dongjin Wang, Bing Gong
Software Mentions: 2
Published: about 7 years ago

10.1155/2019/1429316

Transcriptomic Evidence of Adaptive Evolution of the Epiphytic Fern <i>Asplenium nidus</i>
Cited by: 6
Author(s): Jiao Zhang, Li Liu, Jiang-Ping Shu, Dongmei Jin, Hui Shen, Hongfeng Chen, Rui Zhang, Yue‐Hong Yan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0063656

Protective Effects of Andrographolide Analogue AL-1 on ROS-Induced RIN-mβ Cell Death by Inducing ROS Generation
Cited by: 16
Author(s): Guang-Rong Yan, Hui-Hua Zhou, Yang Wang, Yin Zhong, Zi-Lu Tan, Yuqiang Wang, Qing-Yu He
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0143377

Bioinformatics Analysis of the Effects of Tobacco Smoke on Gene Expression
Cited by: 16
Author(s): Chunhua Cao, Jianhua Chen, Chengqi Lyu, Jia Yu, Wei Zhao, Yi Wang, Derong Zou
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0231234

The evolving systemic biomarker milieu in obese ZSF1 rat model of human cardiometabolic syndrome: Characterization of the model and cardioprotective effect of GDF15
Cited by: 7
Author(s): Marina Stolina, Xin Luo, Denise Dwyer, Chun-Ya Han, Rhonda Chen, Ying Zhang, Ye Xiong, Yinhong Chen, Jun Yin, Artem Shkumatov, Brandon Ason, Clarence Hale, Murielle M. Véniant
Software Mentions: 2
Published: about 6 years ago

10.3390/biomedicines9091211

Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions
Cited by: 3
Author(s): Yan Yan, Tingting Gu, Stine Duelund Kaas Christensen, Junjing Su, Thomas Ravn Lassen, Marie Vognstoft Hjortbak, IJu Lo, Susanne Trillingsgaard Venø, Anna Zsófia Tóth, Ping Song, Morten S. Nielsen, Hans Erik Bøtker, Blagoy Blagoev, Kim Ryun Drasbek, Jørgen Kjems
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0249374

Tumor microenvironment characterization in cervical cancer identifies prognostic relevant gene signatures
Cited by: 6
Author(s): Linyu Peng, Gati Hayatullah, Haïyan Zhou, Shuzhen Chang, Liya Liu, Haifeng Qiu, Xiaoran Duan, Han Liang
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/5925126

Metabonomic-Transcriptome Integration Analysis on Osteoarthritis and Rheumatoid Arthritis
Cited by: 6
Author(s): Ningyang Gao, Ding Li, Jian Pang, Yuxin Zheng, Yuelong Cao, Hongsheng Zhan, Yue Shi
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/2489175

An Integrated Transcriptomic and Proteomic Analysis Identifies Significant Novel Pathways for Henoch-Schönlein Purpura Nephritis Progression
Cited by: 4
Author(s): Biao Xie, Wei Zhang, Qi Zhang, Qiuju Zhang, Yupeng Wang, Lin Sun, Meina Liu, Ping Zhou
Software Mentions: 2
Published: about 6 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers13061397

Mutations Associated with No Durable Clinical Benefit to Immune Checkpoint Blockade in Non-S-Cell Lung Cancer
Cited by: 8
Author(s): Guangsheng Zhu, Dian Ren, Xi Liu, Ruifeng Shi, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade de Mello, Jun Chen, Song Xu
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11010034

Antrocin Sensitizes Prostate Cancer Cells to Radiotherapy through Inhibiting PI3K/AKT and MAPK Signaling Pathways
Cited by: 31
Author(s): Yuan Chen, David T.W. Tzeng, Yiping Huang, Chun–Ming Lin, U‐Ging Lo, Chia‐Lin Wu, Lin H, Jer‐Tsong Hsieh, Chih‐Hsin Tang, Chih‐Ho Lai
Software Mentions: 2
Published: over 7 years ago

10.3390/cancers13030489

Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells
Cited by: 5
Author(s): Claire D. James, Siddharth Saini, Fatmata Sesay, Kevin Ko, Jessica Felthousen-Rusbasan, Audra N. Iness, Tara J. Nulton, Brad E. Windle, Mikhail G. Dozmorov, Iain M. Morgan, Larisa Litovchick
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers12092573

N-MYC Downstream Regulated Gene 4 (NDRG4), a Frequent Downregulated Gene through DNA Hypermethylation, plays a Tumor Suppressive Role in Esophageal Adenocarcinoma
Cited by: 5
Author(s): Long‐Long Cao, Tingsong Hu, Heng Lu, Dunfa Peng
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: about 6 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 5 years ago

10.7150/ijms.47555

Research on the potential mechanism of Chuanxiong Rhizoma on treating Diabetic Nephropathy based on network pharmacology
Cited by: 7
Author(s): Shanshan Hu, Siteng Chen, Zhilei Li, Yuhang Wang, Yong Wang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41420-021-00542-9

Determination of the dynamic cellular transcriptional profiles during kidney development from birth to maturity in rats by single-cell RNA sequencing
Cited by: 6
Author(s): Fangrui Ding, Xiuying Tian, Jiali Mo, Botao Wang, Jun Zheng
Software Mentions: 2
Published: about 5 years ago

10.1038/s41421-020-00238-x

Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans
Cited by: 27
Author(s): Tianbin Liu, Jie Li, Lei Yu, Hai Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/6898093

Genomic Expression Profiling and Bioinformatics Analysis of Chronic Recurrent Multifocal Osteomyelitis
Cited by: 3
Author(s): Kai Huang, Bingyuan Lin, Yiyang Liu, Qiaofeng Guo, Haiyong Ren
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/4951692

Comprehensive Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Biomarkers in Wilms’ Tumor
Cited by: 15
Author(s): Hong Zheng, Bai-Hui Li, Chang Liu, Jia Li, Fengting Liu
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/8082697

Identification and Verification of Core Genes in Colorectal Cancer
Cited by: 22
Author(s): Houxi Xu, Yuzhu Ma, Jinzhi Zhang, Jialin Gu, Xianwen Jing, Lu Shen, Shunjun Fu, Jiege Huo
Software Mentions: 2
Published: over 6 years ago

10.1186/s11658-018-0110-4

Systematic identification of the key candidate genes in breast cancer stroma
Cited by: 29
Author(s): Yanxia Wang, Hui Xu, Baoan Zhu, Qiu Zhen-ling, Lin Zx
Software Mentions: 2
Published: almost 8 years ago

10.1111/cpr.13085

Infusion of hESC derived Immunity‐and‐matrix regulatory cells improves cognitive ability in early‐stage AD mice
Cited by: 5
Author(s): Jing Liu, Zongren Hou, Jun Wu, Kailun Liu, Da Li, Tingting Gao, Wenjing Liu, Bin An, Yun Sun, Fan Mo, Liu Wang, Yukai Wang, Jie Hao, Baoyang Hu
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: over 7 years ago

10.1016/j.celrep.2019.10.131

Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells
Cited by: 48
Author(s): Assaf Magen, Jia Nie, Thomas Ciucci, Samira Tamoutounour, Yongmei Zhao, Monika Mehta, Bao Tran, Dorian B. McGavern, Sridhar Hannenhalli, Rémy Bosselut
Software Mentions: 2
Published: almost 7 years ago

10.1155/2021/6650181

miRNA-mRNA Regulatory Network Reveals miRNAs in HCT116 in Response to Folic Acid Deficiency via Regulating Vital Genes of Endoplasmic Reticulum Stress Pathway
Cited by: 4
Author(s): Lin Lü, Hang Zhao, Jianjun Li, Kun Zhang, Xu Wang
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/3650935

Sex Difference of Ribosome in Stroke-Induced Peripheral Immunosuppression by Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Jianqin Xie, Lu Yapeng, Hongli Sun, Lina Gao, Peipei Song, Zhijun Feng, Chongge You
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/8849415

Identification of Multiple Hub Genes and Pathways in Hepatocellular Carcinoma: A Bioinformatics Analysis
Cited by: 8
Author(s): Junwei Liu, Fang Han, Jianyi Ding, Xiaodong Liang, Jie Liu, Dongsheng Huang, Chengwu Zhang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41422-020-0314-9

Elimination of senescent cells by β-galactosidase-targeted prodrug attenuates inflammation and restores physical function in aged mice
Cited by: 154
Author(s): Yusheng Cai, Huanhuan Zhou, Yinhua Zhu, Qi Sun, Yin Ji, Anqi Xue, Yuting Wang, Wenhan Chen, Xiaomei Yu, Longteng Wang, Han Chen, Cheng Li, Tuoping Luo, Hongkui Deng
Software Mentions: 2
Published: over 6 years ago

10.1016/j.stem.2021.01.003

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population
Cited by: 92
Author(s): Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B. Gaber, Sophie H. L. Austin, M. Masdeu, A. Edwards, Noelia Urbán, Anna Marciniak–Czochra, François Guillemot
Software Mentions: 2
Published: over 5 years ago

10.3390/cells10061410

Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: over 5 years ago

10.7150/ijms.35984

Protein chip and bioinformatic analyses of differentially expressed proteins involved in the effect of hydrogen-rich water on myocardial ischemia-reperfusion injury
Cited by: 6
Author(s): Liangtong Li, Tongtong Liu, Xiangzi Li, Xuanchen Liu, Li Liu, Shaochun Li, Zhilin Li, Yujuan Zhou, Fulin Liu
Software Mentions: 2
Published: over 7 years ago

10.3389/fcell.2021.684259

Development and Validation of a Ferroptosis-Related Gene Signature for Overall Survival Prediction in Lung Adenocarcinoma
Cited by: 26
Author(s): Qiang Tian, Yan Zhou, Lizhe Zhu, Huan Gao, Jin Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.670890

Identify Function of WASL in Prognosis of Cervical Cancer Based on Omics Data
Cited by: 0
Author(s): Jian Hou, Chen Chen, Yingying Hu, Qiyong Gong, Lijuan Gan, Yu Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.682060

Cyclophosphamide Exposure Causes Long-Term Detrimental Effect of Oocytes Developmental Competence Through Affecting the Epigenetic Modification and Maternal Factors’ Transcription During Oocyte Growth
Cited by: 10
Author(s): Weijie Yang, Yerong Ma, Jiamin Jin, Pengfei Ren, Hanjing Zhou, Shiqian Xu, Yingyi Zhang, Zhanhong Hu, Rong Yan, Yongdong Dai, Yinli Zhang, Songying Zhang
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.681240

Effect of ISM1 on the Immune Microenvironment and Epithelial-Mesenchymal Transition in Colorectal Cancer
Cited by: 12
Author(s): Yahong Wu, Xiubo Liang, Junjie Ni, Rongjie Zhao, Shengpeng Shao, Lu Si, Weidong Han, Liangliang Yu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.581919

PAQR3 Inhibits Non-small Cell Lung Cancer Growth by Regulating the NF-κB/p53/Bax Axis
Cited by: 17
Author(s): Qiang Guo, Xixian Ke, Shixu Fang, Wen Gao, Yimin Song, Cheng Chen, Haojie Lu, Gang Xu
Software Mentions: 2
Published: almost 6 years ago

10.1155/2018/2954208

Challenges in Stratifying the Molecular Variability of Patient-Derived Colon Tumor Xenografts
Cited by: 17
Author(s): Magdalena Cybulska, Tomasz Olesiński, Krzysztof Goryca, Katarzyna Paczkowska, Małgorzata Statkiewicz, Michał Kopczyński, Aleksandra Grochowska, Katarzyna Unrug-Bielawska, Anita Tyl-Bielicka, Marta Gajewska, Andrzej Mróz, Michalina Dąbrowska, Jakub Karczmarski, Agnieszka Paziewska, Leszek Zając, M. Bednarczyk, Michał Mikula, Jerzy Ostrowski
Software Mentions: 2
Published: over 7 years ago

10.3389/fcell.2021.729965

HIF1α Regulates IL17 Signaling Pathway Influencing Sensitivity of Taxane-Based Chemotherapy for Breast Cancer
Cited by: 3
Author(s): Huijuan Dai, Xiaonan Sheng, Yaohui Wang, Liheng Zhou, Yingsong Lin, Yueyao Du, Fan Yang, Rui Sha, Jing Peng, Lishuang Yao, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.00310

Linking Phospho-Gonadotropin Regulated Testicular RNA Helicase (GRTH/DDX25) to Histone Ubiquitination and Acetylation Essential for Spermatid Development During Spermiogenesis
Cited by: 12
Author(s): Raghuveer Kavarthapu, Ramaswamy Anbazhagan, Ashish K. Sharma, Joseph Shiloach, Maria L. Dufau
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.203154

Pan-cancer analysis reveals an immunological role and prognostic potential of PXN in human cancer
Cited by: 11
Author(s): Yun Chen, Zaizhu Han, Yan Xiao, Pan Shen, Li Tan, Shaohui Zhang, Qiong Liu, Zhengrong Gao, Jie Zhao, Ya‐Qiong Zhao, Yue Guo, Yun‐Zhi Feng
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.708819

Combined DNA Methylation and Transcriptomic Assessments to Determine a Prognostic Model for PD-1-Negative Hepatocellular Carcinoma
Cited by: 4
Author(s): Lixu Zhu, Wenzhi Guo
Software Mentions: 2
Published: about 5 years ago

10.1186/s13045-021-01125-y

Metabolic landscapes in sarcomas
Cited by: 5
Author(s): Richard Miallot, Franck Galland, Virginie Millet, Jean‐Yves Blay, Philippe Naquet
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.694652

The Biological Function Delineated Across Pan-Cancer Levels Through lncRNA-Based Prognostic Risk Assessment Factors for Pancreatic Cancer
Cited by: 12
Author(s): Xu-Dong Tang, Mengyan Zhang, Liang Sun, Fei Xu, Xin Peng, Yan Zhang, Ying Deng, Shuliang Wu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.658856

SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
Cited by: 8
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.705060

BRAF Mutation as a Potential Therapeutic Target for Checkpoint Inhibitors: A Comprehensive Analysis of Immune Microenvironment in BRAF Mutated Colon Cancer
Cited by: 15
Author(s): Shuyi Cen, Kun Liu, Yu Zheng, Jianzhen Shan, Chao Jing, Jiale Gao, Hongming Pan, Zhigang Bai, Zhen Liu
Software Mentions: 2
Published: about 5 years ago

10.1155/2017/8529796

Microarray Analysis and Detection of MicroRNAs Associated with Chronic Thromboembolic Pulmonary Hypertension
Cited by: 17
Author(s): Ran Miao, Ying Wang, Jun Wan, Liubing Dong, Juanni Gong, Jifeng Li, Yunxia Zhang, Wenbo Pang, Zhenguo Zhai, Yuanhua Yang
Software Mentions: 2
Published: over 9 years ago

10.3389/fcell.2021.715027

RNA-Binding Proteins CLK1 and POP7 as Biomarkers for Diagnosis and Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 4
Author(s): Xiuping Yang, Baoai Han, Zuhong He, Ya Ping Zhang, Kun Lin, Hongguo Su, Davood K Hosseini, Haiying Sun, Minlan Yang, Xiong Chen
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/9705950

Identification of Long Noncoding RNA Associated ceRNA Networks in Rosacea
Cited by: 3
Author(s): Lian Wang, Ruifeng Lu, Yujia Wang, Xiaoyun Wang, Dan Hao, Xiang Wen, Yanmei Li, Minghui Zeng, Xian Jiang
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2021.710112

Inhibition of Postn Rescues Myogenesis Defects in Myotonic Dystrophy Type 1 Myoblast Model
Cited by: 2
Author(s): Xiaopeng Shen, Zhongxian Liu, Chunguang Wang, Xuezhen Feng, Jingyi Zhang, Meng Li, Lei Yang, Ao Wang, Chao Bi, Guoping Zhu
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/4139320

Upregulation of CEP55 Predicts Dismal Prognosis in Patients with Liver Cancer
Cited by: 13
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/5304578

RNA Sequencing for Gene Expression Profiles in Peripheral Blood Mononuclear Cells with Ankylosing Spondylitis RNA
Cited by: 3
Author(s): Dan Huang, Jian Liu, Yunxiang Cao, Lei Wan, Hui Jiang, Yue Sun, Jianting Wen
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/3962953

Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis
Cited by: 12
Author(s): Wanxue Hu, Qin Xie, Yicong Xu, Xin Tang, Hang Zhao
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/5520053

Genome-Wide MicroRNA Analysis of Peripheral Blood Mononuclear Cells Reveals Elevated miR-142-3p Expression as a Potential Biomarker for Secondary Syphilis
Cited by: 1
Author(s): Zhenghan Yang, Xiumin Yang, Zhaoyan Gan, Yuan Liang, Wei Liu, Chaozeng Si
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.617366

pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework
Cited by: 17
Author(s): Shihua Li, Kai Yu, Guandi Wu, Qingfeng Zhang, Panqin Wang, Jian Zheng, Zexian Liu, Jichao Wang, Xiaolan Gao, Han Cheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.713466

The Tick Microbiota Dysbiosis Promote Tick-Borne Pathogen Transstadial Transmission in a Babesia microti–Infected Mouse Model
Cited by: 8
Author(s): Nana Wei, Jie Cao, Houshuang Zhang, Yongzhi Zhou, Jinlin Zhou
Software Mentions: 2
Published: about 5 years ago

10.3389/fncel.2021.703951

Single Cell Transcriptomics of Ependymal Cells Across Age, Region and Species Reveals Cilia-Related and Metal Ion Regulatory Roles as Major Conserved Ependymal Cell Functions
Cited by: 23
Author(s): Adam L. Macdonald, Brianna Lu, Maxime Caron, Nina Caporicci-Dinucci, Dale Hatrock, Kevin Petrecca, Guillaume Bourque, Jo Anne Stratton
Software Mentions: 2
Published: about 5 years ago

10.3389/fendo.2018.00815

Acylated Ghrelin Supports the Ovarian Transcriptome and Follicles in the Mouse: Implications for Fertility
Cited by: 14
Author(s): Luba Sominsky, Jéferson Ferraz Goularte, Zane B. Andrews, Sarah J. Spencer
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/1807089

Aberrant Methylation and Differential Expression of SLC2A1, TNS4, GAPDH, ATP8A2, and CASZ1 Are Associated with the Prognosis of Lung Adenocarcinoma
Cited by: 16
Author(s): Xia Wang, Dongming Shi, Dan Zhao, Dongyan Hu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fendo.2020.611213

Integrated Analysis of Key Genes and Pathways Involved in Nonalcoholic Steatohepatitis Improvement After Roux-en-Y Gastric Bypass Surgery
Cited by: 4
Author(s): Chen Fu, Yong Zhou, Zida Wu, Yunze Li, Wenlong Zhou, Yong Wang
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/7170464

Long Noncoding RNA THAP9-AS1 and TSPOAP1-AS1 Provide Potential Diagnostic Signatures for Pediatric Septic Shock
Cited by: 6
Author(s): Yong Wu, Qi-Gai Yin, Xiaobao Zhang, Ping Zhu, Hengfei Luan, Ying Chen
Software Mentions: 2
Published: almost 6 years ago

10.1155/2021/6676107

Plasma-Derived Exosomal hsa-miR-4488 and hsa-miR-1228-5p: Novel Biomarkers for Dermatomyositis-Associated Interstitial Lung Disease with Anti-Melanoma Differentiation-Associated Protein 5 Antibody-Positive Subset
Cited by: 10
Author(s): Danli Zhong, Caimei Wu, Dong Xu, Jingjing Bai, Qian Wang, Xiaofeng Zeng
Software Mentions: 2
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223