bioconductor: clusterProfiler | Projects

10.3389/fgene.2021.668871

Prognostic Power of a Chaperonin Containing TCP-1 Subunit Genes Panel for Hepatocellular Carcinoma
Cited by: 10
Author(s): Wenli Li, Jun Li, Hetong Zhao
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.612196

Identification of a Ubiquitination-Related Gene Risk Model for Predicting Survival in Patients With Pancreatic Cancer
Cited by: 8
Author(s): Hao Zuo, Luojun Chen, Na Li, Qing Song
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5415-1

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
Cited by: 8
Author(s): Frédéric Herault, Magalie Houée-Bigot, Élisabeth Baéza, Olivier Bouchez, Diane Esquerré, Christophe Klopp, Christian Diot
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.00730

Differentially Expressed Genes Associated With Prognosis in Locally Advanced Lymph Node-Negative Prostate Cancer
Cited by: 20
Author(s): Elena A. Pudova, E. N. Lukyanova, K. M. Nyushko, Dmitry S. Mikhaylenko, Andrew R. Zaretsky, Anastasiya V. Snezhkina, М. В. Савватеева, Anastasiya A. Kobelyatskaya, Nataliya V. Melnikova, Н. Н. Волченко, Г. Д. Ефремов, Ksenia M. Klimina, А. А. Белова, Marina V. Kiseleva, А. Д. Каприн, B. Ya. Alekseev, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.726387

Establishment and Validation of a Genetic Label Associated With M2 Macrophage Infiltration to Predict Survival in Patients With Colon Cancer and to Assist in Immunotherapy
Cited by: 5
Author(s): Boyang Xu, Ziqi Peng, Guanyu Yan, Ningning Wang, Moye Chen, Xue Qing Yao, Mingjun Sun, Yi An
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2021.669694

Association of RYR2 Mutation With Tumor Mutation Burden, Prognosis, and Antitumor Immunity in Patients With Esophageal Adenocarcinoma
Cited by: 31
Author(s): Xinwei Han, Long Liu, Dechao Jiao, Chunguang Guo, Libo Wang, Zhaonan Li, Zhenqiang Sun, Yanan Zhao
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.756471

Landscape of T Cells Transcriptional and Metabolic Modules During HIV Infection Based on Weighted Gene Co-expression Network Analysis
Cited by: 5
Author(s): Jianting Xu, Jing Pan, Xin Liu, Nan Zhang, Xinyue Zhang, Guoqing Wang, Wenyan Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.00064

Post-Transcriptional Dysregulation of microRNA and Alternative Polyadenylation in Colorectal Cancer
Cited by: 21
Author(s): Zhanrui Mao, Hui Zhao, Yanmin Qin, Jianming Wei, Jingyong Sun, Weiwei Zhang, Yani Kang
Software Mentions: 2
Published: over 6 years ago

10.1155/2019/2654296

A Novel Biomarker Based on miRNA to Predict the Prognosis of Muscle-Invasive Bladder Urothelial Carcinoma
Cited by: 4
Author(s): Yu Feng, Qingting Feng, Longhe Xu, Yiqing Jiang, Meng Fang, Xiaochen Shu
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2018.00254

Pan-Cancer Analysis Reveals the Functional Importance of Protein Lysine Modification in Cancer Development
Cited by: 21
Author(s): Li Chen, Yanyan Miao, Mengni Liu, Yanru Zeng, Gao Z, Di Peng, Bosu Hu, Xu Li, Yueyuan Zheng, Yu Xue, Zhixiang Zuo, Yubin Xie, Jian Ren
Software Mentions: 2
Published: about 8 years ago

10.3389/fmolb.2021.652250

Identification of mRNA-, circRNA- and lncRNA- Associated ceRNA Networks and Potential Biomarkers for Preeclampsia From Umbilical Vein Endothelial Cells
Cited by: 15
Author(s): Dan Chen, Biwei He, Ping Zheng, Shuying Wang, Xueya Zhao, Jinyu Liu, Xingyu Yang, Weiwei Cheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fnmol.2019.00196

Differential Expression Profiles and Functional Prediction of Circular RNAs and Long Non-coding RNAs in the Hippocampus of Nrf2-Knockout Mice
Cited by: 15
Author(s): Runjiao Zhang, Yan Li, Qing Liu, Yanjing Gao, Juan Du, Jun Ma, Shao-Guang Sun, Lei Wang
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.579900

Enhanced Expression of CNTD2/CCNP Predicts Poor Prognosis in Bladder Cancer Based on the GSE13507
Cited by: 0
Author(s): Mancheng Gong, Erlin Song, Guiying Huang, Wenjun Ni, Wenjing Dong, Runqiang Yuan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-5263-z

When pitch adds to volume: coregulation of transcript diversity predicts gene function
Cited by: 0
Author(s): Alejandro Cáceres, Juan R. González
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2020.556749

Profiling Alternative 3′ Untranslated Regions in Sorghum using RNA-seq Data
Cited by: 4
Author(s): Min Tu, Yin Li
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2021.698124

Visualization and Analysis of Gene Expression in Stanford Type A Aortic Dissection Tissue Section by Spatial Transcriptomics
Cited by: 13
Author(s): Yanhong Li, Ying Cao, Fen Liu, Qian Zhao, Dilare Adi, Qiang Huo, Zheng Liu, Junyi Luo, Binbin Fang, Ting Tian, Di Liu, Yi‐Ning Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.671392

Expression and Prognosis Analysis of SUMOylation Regulators in Oral Squamous Cell Carcinoma Based on High-Throughput Sequencing
Cited by: 8
Author(s): Yutong Meng, Xiaozhi Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.578002

CD52 Is a Prognostic Biomarker and Associated With Tumor Microenvironment in Breast Cancer
Cited by: 21
Author(s): Jianxin Wang, Guangchen Zhang, Yang Sui, Yang Zhong, Yinzhu Chu, Hailing Tang, Binbin Guo, Cong Zhang, Changjun Wu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fneur.2020.580997

Electroacupuncture Alleviates Mechanical Allodynia of a Rat Model of CRPS-I and Modulates Gene Expression Profiles in Dorsal Root Ganglia
Cited by: 7
Author(s): Jie Wang, Xiaoli Zheng, Boyu Liu, Chengyu Yin, Ruixiang Chen, Xiaojie Li, Yuanyuan Li, Huimin Nie, Danyi Zeng, Xiaofen He, Yongliang Jiang, Jianqiao Fang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2021.633132

Methylome Patterns of Cattle Adaptation to Heat Stress
Cited by: 19
Author(s): Marcello Del Corvo, Barbara Lazzari, Emanuele Capra, Ludmilla Balbo Zavarez, Marco Milanesi, Yuri Tani Utsunomiya, Adam Taiti Harth Utsunomiya, Alessandra Stella, Guilherme de Paula Nogueira, José Fernando Garcia, Paolo Ajmone‐Marsan
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.589370

Wfs1 and Related Molecules as Key Candidate Genes in the Hippocampus of Depression
Cited by: 7
Author(s): Jing Yang, Chaoqin Chen, Xiaoyuan Jin, Lu Liu, Jiajia Lin, Xianhui Kang, Shengmei Zhu
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-14-762

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development
Cited by: 54
Author(s): Sarita S. Paranjpe, U. Jacobi, Simon J. van Heeringen, Gert Jan C. Veenstra
Software Mentions: 2
Published: over 12 years ago

10.3389/fnut.2021.724419

Mining RNA-Seq Data to Depict How Penicillium digitatum Shapes Its Transcriptome in Response to Nanoemulsion
Cited by: 2
Author(s): Ruopeng Yang, Xiu Chen, Qiang Huang, Chuying Chen, Kannan R.R. Rengasamy, Jinyin Chen, Chunpeng Wan
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.627459

Construction of Circular RNA–MicroRNA–Messenger RNA Regulatory Network of Recurrent Implantation Failure to Explore Its Potential Pathogenesis
Cited by: 6
Author(s): Jiahuan Luo, Li Zhu, Ning Zhou, Yuanyuan Zhang, Lirong Zhang, Ruopeng Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-021-07688-x

Transcriptome analysis of ovary tissues from low- and high-yielding Changshun green-shell laying hens
Cited by: 10
Author(s): Ren Mu, Yi-yin Yu, Tuya Gegen, Di Wen, Fen Wang, Zhi Chen, Wenbin Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.750827

Bioinformatics Analysis Identified miR-584-5p and Key miRNA-mRNA Networks Involved in the Osteogenic Differentiation of Human Periodontal Ligament Stem Cells
Cited by: 2
Author(s): Chengze Wang, Lingling Dong, Ying Wang, Zhiwei Jiang, Jing Zhang, Guoli Yang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2020.580138

Construction of a MicroRNA-Based Nomogram for Prediction of Lung Metastasis in Breast Cancer Patients
Cited by: 4
Author(s): Leyi Zhang, Jun Pan, Zhen Wang, Chenghui Yang, Jian Huang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.587402

Transcriptional Profiling Reveals the Regulatory Role of DNER in Promoting Pancreatic Neuroendocrine Neoplasms
Cited by: 4
Author(s): Rui He, Wunai Zhang, Shuo Chen, Liu Yang, Wen‐Bin Yang, Junhui Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.604319

Linc00665 Can Predict the Response to Cisplatin-Paclitaxel Neoadjuvant Chemotherapy for Breast Cancer Patients
Cited by: 9
Author(s): Huijuan Dai, Xiaonan Sheng, Rui Sha, Jing Peng, Fan Yang, Liheng Zhou, Yingsong Lin, Yaqian Xu, Shan Zhang, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2020.611213

Integrated Analysis of Key Genes and Pathways Involved in Nonalcoholic Steatohepatitis Improvement After Roux-en-Y Gastric Bypass Surgery
Cited by: 4
Author(s): Chen Fu, Yong Zhou, Zida Wu, Yunze Li, Wenlong Zhou, Yong Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2018.00815

Acylated Ghrelin Supports the Ovarian Transcriptome and Follicles in the Mouse: Implications for Fertility
Cited by: 14
Author(s): Luba Sominsky, Jéferson Ferraz Goularte, Zane B. Andrews, Sarah J. Spencer
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2020.00829

High Expression of the SH3TC2-DT/SH3TC2 Gene Pair Associated With FLT3 Mutation and Poor Survival in Acute Myeloid Leukemia: An Integrated TCGA Analysis
Cited by: 11
Author(s): Pengfei Yu, Hai-Feng Lan, Xianmin Song, Zengkai Pan
Software Mentions: 2
Published: about 6 years ago

10.3389/fncel.2021.703951

Single Cell Transcriptomics of Ependymal Cells Across Age, Region and Species Reveals Cilia-Related and Metal Ion Regulatory Roles as Major Conserved Ependymal Cell Functions
Cited by: 23
Author(s): Adam L. Macdonald, Brianna Lu, Maxime Caron, Nina Caporicci-Dinucci, Dale Hatrock, Kevin Petrecca, Guillaume Bourque, Jo Anne Stratton
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.711984

Regulatory Mechanism and Experimental Verification of Patchouli Alcohol on Gastric Cancer Cell Based on Network Pharmacology
Cited by: 8
Author(s): Yuzhi Song, Liang Chang, Xiaoyuan Wang, Bibo Tan, Jianbo Li, Jie Zhang, Fengbin Zhang, Lianmei Zhao, Guangjie Liu, Bingjie Huo
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcimb.2021.713466

The Tick Microbiota Dysbiosis Promote Tick-Borne Pathogen Transstadial Transmission in a Babesia microti–Infected Mouse Model
Cited by: 8
Author(s): Nana Wei, Jie Cao, Houshuang Zhang, Yongzhi Zhou, Jinlin Zhou
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.617366

pCysMod: Prediction of Multiple Cysteine Modifications Based on Deep Learning Framework
Cited by: 17
Author(s): Shihua Li, Kai Yu, Guandi Wu, Qingfeng Zhang, Panqin Wang, Jian Zheng, Zexian Liu, Jichao Wang, Xiaolan Gao, Han Cheng
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.710112

Inhibition of Postn Rescues Myogenesis Defects in Myotonic Dystrophy Type 1 Myoblast Model
Cited by: 2
Author(s): Xiaopeng Shen, Zhongxian Liu, Chunguang Wang, Xuezhen Feng, Jingyi Zhang, Meng Li, Lei Yang, Ao Wang, Chao Bi, Guoping Zhu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2021.715027

RNA-Binding Proteins CLK1 and POP7 as Biomarkers for Diagnosis and Prognosis of Esophageal Squamous Cell Carcinoma
Cited by: 4
Author(s): Xiuping Yang, Baoai Han, Zuhong He, Ya Ping Zhang, Kun Lin, Hongguo Su, Davood K Hosseini, Haiying Sun, Minlan Yang, Xiong Chen
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.655757

The G4 Resolvase DHX36 Possesses a Prognosis Significance and Exerts Tumour Suppressing Function Through Multiple Causal Regulations in Non-Small Cell Lung Cancer
Cited by: 8
Author(s): Yuxin Cui, Zhilei Li, Jinglin Cao, Jane Lane, Emily Birkin, Dong Xia, Lijian Zhang, Wen Guo Jiang
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.705060

BRAF Mutation as a Potential Therapeutic Target for Checkpoint Inhibitors: A Comprehensive Analysis of Immune Microenvironment in BRAF Mutated Colon Cancer
Cited by: 15
Author(s): Shuyi Cen, Kun Liu, Yu Zheng, Jianzhen Shan, Chao Jing, Jiale Gao, Hongming Pan, Zhigang Bai, Zhen Liu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.658856

SUMOylation Regulator-Related Molecules Can Be Used as Prognostic Biomarkers for Glioblastoma
Cited by: 8
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-021-07497-2

Comparative transcriptomic analysis of thermally stressed Arabidopsis thaliana meiotic recombination mutants
Cited by: 3
Author(s): Jiyue Huang, Hongkuan Wang, Yingxiang Wang, Gregory P. Copenhaver
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.694652

The Biological Function Delineated Across Pan-Cancer Levels Through lncRNA-Based Prognostic Risk Assessment Factors for Pancreatic Cancer
Cited by: 12
Author(s): Xu-Dong Tang, Mengyan Zhang, Liang Sun, Fei Xu, Xin Peng, Yan Zhang, Ying Deng, Shuliang Wu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.708819

Combined DNA Methylation and Transcriptomic Assessments to Determine a Prognostic Model for PD-1-Negative Hepatocellular Carcinoma
Cited by: 4
Author(s): Lixu Zhu, Wenzhi Guo
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.00310

Linking Phospho-Gonadotropin Regulated Testicular RNA Helicase (GRTH/DDX25) to Histone Ubiquitination and Acetylation Essential for Spermatid Development During Spermiogenesis
Cited by: 12
Author(s): Raghuveer Kavarthapu, Ramaswamy Anbazhagan, Ashish K. Sharma, Joseph Shiloach, Maria L. Dufau
Software Mentions: 2
Published: about 6 years ago

10.3389/fcell.2021.729965

HIF1α Regulates IL17 Signaling Pathway Influencing Sensitivity of Taxane-Based Chemotherapy for Breast Cancer
Cited by: 3
Author(s): Huijuan Dai, Xiaonan Sheng, Yaohui Wang, Liheng Zhou, Yingsong Lin, Yueyao Du, Fan Yang, Rui Sha, Jing Peng, Lishuang Yao, Weiqiang Yin, Jinsong Lu
Software Mentions: 2
Published: almost 5 years ago

10.18632/aging.203154

Pan-cancer analysis reveals an immunological role and prognostic potential of PXN in human cancer
Cited by: 11
Author(s): Yun Chen, Zaizhu Han, Yan Xiao, Pan Shen, Li Tan, Shaohui Zhang, Qiong Liu, Zhengrong Gao, Jie Zhao, Ya‐Qiong Zhao, Yue Guo, Yun‐Zhi Feng
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.581919

PAQR3 Inhibits Non-small Cell Lung Cancer Growth by Regulating the NF-κB/p53/Bax Axis
Cited by: 17
Author(s): Qiang Guo, Xixian Ke, Shixu Fang, Wen Gao, Yimin Song, Cheng Chen, Haojie Lu, Gang Xu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2021.681240

Effect of ISM1 on the Immune Microenvironment and Epithelial-Mesenchymal Transition in Colorectal Cancer
Cited by: 12
Author(s): Yahong Wu, Xiubo Liang, Junjie Ni, Rongjie Zhao, Shengpeng Shao, Lu Si, Weidong Han, Liangliang Yu
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2021.682060

Cyclophosphamide Exposure Causes Long-Term Detrimental Effect of Oocytes Developmental Competence Through Affecting the Epigenetic Modification and Maternal Factors’ Transcription During Oocyte Growth
Cited by: 10
Author(s): Weijie Yang, Yerong Ma, Jiamin Jin, Pengfei Ren, Hanjing Zhou, Shiqian Xu, Yingyi Zhang, Zhanhong Hu, Rong Yan, Yongdong Dai, Yinli Zhang, Songying Zhang
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.730716

Identification of a Novel Ferroptosis-Related Gene Prognostic Signature in Bladder Cancer
Cited by: 25
Author(s): Jiale Sun, Wenchang Yue, Jiawei You, Xuedong Wei, Yuhua Huang, Zhixin Ling, Jianquan Hou
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2021.670890

Identify Function of WASL in Prognosis of Cervical Cancer Based on Omics Data
Cited by: 0
Author(s): Jian Hou, Chen Chen, Yingying Hu, Qiyong Gong, Lijuan Gan, Yu Xu
Software Mentions: 2
Published: about 5 years ago

10.1186/s12872-021-01960-4

A 2 miRNAs-based signature for the diagnosis of atherosclerosis
Cited by: 7
Author(s): Xiujiang Han, Huimin Wang, Yongjian Li, Lina Liu, Sheng Gao
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.684259

Development and Validation of a Ferroptosis-Related Gene Signature for Overall Survival Prediction in Lung Adenocarcinoma
Cited by: 26
Author(s): Qiang Tian, Yan Zhou, Lizhe Zhu, Huan Gao, Jin Yang
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10061410

Regulatory miRNA–mRNA Networks in Parkinson’s Disease
Cited by: 10
Author(s): Bruno Lopes Santos‐Lobato, Amanda Ferreira Vidal, Ândrea Ribeiro-dos-Santos
Software Mentions: 2
Published: about 5 years ago

10.3390/cells10071838

Transcriptomic Hallmarks of Ischemia-Reperfusion Injury
Cited by: 9
Author(s): Mandana Movahed, Sydney Brockie, James Hong, Michael G. Fehlings
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01207

A Five-microRNA Signature as Prognostic Biomarker in Colorectal Cancer by Bioinformatics Analysis
Cited by: 41
Author(s): Guodong Yang, Yujiao Zhang, Jiyuan Yang
Software Mentions: 2
Published: over 6 years ago

10.1016/j.stem.2021.01.003

Coordinated changes in cellular behavior ensure the lifelong maintenance of the hippocampal stem cell population
Cited by: 92
Author(s): Lachlan Harris, Piero Rigo, Thomas Stiehl, Zachary B. Gaber, Sophie H. L. Austin, M. Masdeu, A. Edwards, Noelia Urbán, Anna Marciniak–Czochra, François Guillemot
Software Mentions: 2
Published: over 5 years ago

10.1038/s41422-020-0314-9

Elimination of senescent cells by β-galactosidase-targeted prodrug attenuates inflammation and restores physical function in aged mice
Cited by: 154
Author(s): Yusheng Cai, Huanhuan Zhou, Yinhua Zhu, Qi Sun, Yin Ji, Anqi Xue, Yuting Wang, Wenhan Chen, Xiaomei Yu, Longteng Wang, Han Chen, Cheng Li, Tuoping Luo, Hongkui Deng
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2019.10.131

Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells
Cited by: 48
Author(s): Assaf Magen, Jia Nie, Thomas Ciucci, Samira Tamoutounour, Yongmei Zhao, Monika Mehta, Bao Tran, Dorian B. McGavern, Sridhar Hannenhalli, Rémy Bosselut
Software Mentions: 2
Published: over 6 years ago

10.1111/cpr.13085

Infusion of hESC derived Immunity‐and‐matrix regulatory cells improves cognitive ability in early‐stage AD mice
Cited by: 5
Author(s): Jing Liu, Zongren Hou, Jun Wu, Kailun Liu, Da Li, Tingting Gao, Wenjing Liu, Bin An, Yun Sun, Fan Mo, Liu Wang, Yukai Wang, Jie Hao, Baoyang Hu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.623313

Identification and Validation of a Prognostic Signature for Prostate Cancer Based on Ferroptosis-Related Genes
Cited by: 26
Author(s): Huan Liu, Lei Gao, Tongxin Xie, Jie Li, Ting‐Shuai Zhai, Yunfei Xu
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2020.00184

A Dual-Circular RNA Signature as a Non-invasive Diagnostic Biomarker for Gastric Cancer
Cited by: 13
Author(s): Lei Han, Xiaoying Zhang, Aiming Wang, Jicheng Yang, Xuelei Cao, Qiaoji Qin, Tao Yu, Lei Yin, Huan Huang
Software Mentions: 2
Published: over 6 years ago

10.1186/s11658-018-0110-4

Systematic identification of the key candidate genes in breast cancer stroma
Cited by: 29
Author(s): Yanxia Wang, Hui Xu, Baoan Zhu, Qiu Zhen-ling, Lin Zx
Software Mentions: 2
Published: almost 8 years ago

10.3389/fonc.2021.651644

Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41421-020-00238-x

Cross-species single-cell transcriptomic analysis reveals pre-gastrulation developmental differences among pigs, monkeys, and humans
Cited by: 27
Author(s): Tianbin Liu, Jie Li, Lei Yu, Hai Xi Sun, Jing Li, Guoyi Dong, Yingying Hu, Yong Li, Yue Shen, Jun Wu, Ying Gu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41420-021-00542-9

Determination of the dynamic cellular transcriptional profiles during kidney development from birth to maturity in rats by single-cell RNA sequencing
Cited by: 6
Author(s): Fangrui Ding, Xiuying Tian, Jiali Mo, Botao Wang, Jun Zheng
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2021.633024

Integrated Analysis of Nine Prognostic RNA-Binding Proteins in Soft Tissue Sarcoma
Cited by: 6
Author(s): Lu-Lu Lin, Zizhen Liu, Jingzhuo Tian, Xiao Zhang, Yan Zhang, Min Yang, Hongshan Zhong, Wei Bin Fang, Renxiong Wei, Chao Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.691115

Transcription Factors and Methylation Drive Prognostic miRNA Dysregulation in Hepatocellular Carcinoma
Cited by: 6
Author(s): Si Qin, Jieyun Xu, Yunmeng Yi, Sizhu Jiang, Jin Park, Xinyi Xia, Fei Ma
Software Mentions: 2
Published: about 5 years ago

10.3389/fonc.2019.01011

Integrated Network Analysis Reveals FOXM1 and MYBL2 as Key Regulators of Cell Proliferation in Non-small Cell Lung Cancer
Cited by: 32
Author(s): Firoz Ahmed
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12885-021-08305-6

Characterization of alternative splicing events and prognostic signatures in breast cancer
Cited by: 1
Author(s): Pihua Han, Jianguo Zhu, Guang Feng, Zizhang Wang, Yanni Ding
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8951907

Baicalin Represses C/EBP<i>β</i> via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: about 6 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2019.01105

Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma
Cited by: 33
Author(s): Xicheng Wang, Xining Wang, Wenxin Li, Qi Zhang, Jie Chen, Tao Chen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fonc.2021.666505

Identification of a Novel Transcription Factor Prognostic Index for Breast Cancer
Cited by: 2
Author(s): Junhao Liu, Zexuan Liu, Yangying Zhou, Manting Zeng, Sanshui Pan, Huan Liu, Qiong Liu, Hong Zhu
Software Mentions: 2
Published: about 5 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
Cited by: 21
Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-020-07391-2

Development and validation of a novel pseudogene pair-based prognostic signature for prediction of overall survival in patients with hepatocellular carcinoma
Cited by: 6
Author(s): Yajuan Du, Ying Gao
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.597996

Systematic Construction and Validation of an RNA-Binding Protein-Associated Model for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 4
Author(s): Siyuan Tian, Jingyi Liu, Keshuai Sun, Yansheng Liu, Jiahao Yu, Shuoyi Ma, Miao Zhang, Jia Gui, Xia Zhou, Yulong Shang, Ying Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.607989

AGAP2-AS1 May Promote the Occurrence and Development of Glioblastoma by Sponging miR-9-5p: Evidence From a ceRNA Network
Cited by: 4
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.671418

Expression Analysis of Long Non-Coding RNAs Related With FOXM1, GATA3, FOXA1 and ESR1 in Breast Tissues
Cited by: 5
Author(s): Bita Hassani, Mohammad Taheri, Yazdan Asgari, Ali Zekri, Ali Sattari, Soudeh Ghafouri‐Fard, Farkhondeh Pouresmaeili
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12092573

N-MYC Downstream Regulated Gene 4 (NDRG4), a Frequent Downregulated Gene through DNA Hypermethylation, plays a Tumor Suppressive Role in Esophageal Adenocarcinoma
Cited by: 5
Author(s): Long‐Long Cao, Tingsong Hu, Heng Lu, Dunfa Peng
Software Mentions: 2
Published: almost 6 years ago

10.3390/cancers13030489

Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells
Cited by: 5
Author(s): Claire D. James, Siddharth Saini, Fatmata Sesay, Kevin Ko, Jessica Felthousen-Rusbasan, Audra N. Iness, Tara J. Nulton, Brad E. Windle, Mikhail G. Dozmorov, Iain M. Morgan, Larisa Litovchick
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11010034

Antrocin Sensitizes Prostate Cancer Cells to Radiotherapy through Inhibiting PI3K/AKT and MAPK Signaling Pathways
Cited by: 31
Author(s): Yuan Chen, David T.W. Tzeng, Yiping Huang, Chun–Ming Lin, U‐Ging Lo, Chia‐Lin Wu, Lin H, Jer‐Tsong Hsieh, Chih‐Hsin Tang, Chih‐Ho Lai
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2020.613102

A Prognostic Model Based on RNA Binding Protein Predicts Clinical Outcomes in Hepatocellular Carcinoma Patients
Cited by: 6
Author(s): Zhongsong Man, Yongqiang Chen, Lu Gao, Guowei Xei, Quanfu Li, Qian Lü, Jun Yan
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13061397

Mutations Associated with No Durable Clinical Benefit to Immune Checkpoint Blockade in Non-S-Cell Lung Cancer
Cited by: 8
Author(s): Guangsheng Zhu, Dian Ren, Xi Liu, Ruifeng Shi, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade de Mello, Jun Chen, Song Xu
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2020.594023

Cell Plasticity-Related Phenotypes and Taxanes Resistance in Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Natàlia Jiménez, Òscar Reig, Ruth Montalbo, Maria Milà-Guasch, Lluis Nadal-Dieste, Giancarlo Castellano, Juan José Lozano, Iván Victoria, Albert Font, Alejo Rodríguez‐Vida, Joan Carles, Cristina Suárez, Montserrat Doménech, Núria Sala-González, Pedro Fernández, Leonardo Rodríguez‐Carunchio, Sherley Díaz, Aleix Prat, Mercedes Marín-Aguilera, Begoña Mellado
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.01532

Complement C7 (C7), a Potential Tumor Suppressor, Is an Immune-Related Prognostic Biomarker in Prostate Cancer (PC)
Cited by: 12
Author(s): Zhao Chun-hua, Xin Yan, Guo-Wei Du, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Ren‐Jie Zhang, Guan-Fa Xiao, Tong-Zu Liu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0249374

Tumor microenvironment characterization in cervical cancer identifies prognostic relevant gene signatures
Cited by: 6
Author(s): Linyu Peng, Gati Hayatullah, Haïyan Zhou, Shuzhen Chang, Liya Liu, Haifeng Qiu, Xiaoran Duan, Han Liang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0231234

The evolving systemic biomarker milieu in obese ZSF1 rat model of human cardiometabolic syndrome: Characterization of the model and cardioprotective effect of GDF15
Cited by: 7
Author(s): Marina Stolina, Xin Luo, Denise Dwyer, Chun-Ya Han, Rhonda Chen, Ying Zhang, Ye Xiong, Yinhong Chen, Jun Yin, Artem Shkumatov, Brandon Ason, Clarence Hale, Murielle M. Véniant
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0143377

Bioinformatics Analysis of the Effects of Tobacco Smoke on Gene Expression
Cited by: 16
Author(s): Chunhua Cao, Jianhua Chen, Chengqi Lyu, Jia Yu, Wei Zhao, Yi Wang, Derong Zou
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0063656

Protective Effects of Andrographolide Analogue AL-1 on ROS-Induced RIN-mβ Cell Death by Inducing ROS Generation
Cited by: 16
Author(s): Guang-Rong Yan, Hui-Hua Zhou, Yang Wang, Yin Zhong, Zi-Lu Tan, Yuqiang Wang, Qing-Yu He
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0219013

Expression profiles of circRNAs and the potential diagnostic value of serum circMARK3 in human acute Stanford type A aortic dissection
Cited by: 19
Author(s): Chengming Tian, Xingming Tang, Xiyu Zhu, Qing Zhou, Yuting Guo, Rui Zhao, Dongjin Wang, Bing Gong
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.566599

Single-Cell Sequencing of Glioblastoma Reveals Central Nervous System Susceptibility to SARS-CoV-2
Cited by: 8
Author(s): Bingshan Wu, Weihong Wang, Haopeng Wang, Quanli Zou, Benxia Hu, Lei Ye, Yangchun Hu, Yuhuan Xie, Nali Huang, Qing Lan, Hongwei Cheng, Jun Dong, Xingliang Dai
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.652567

Analysis of Long Noncoding RNAs in Aila-Induced Non-Small Cell Lung Cancer Inhibition
Cited by: 2
Author(s): Lin Chen, Chen Wu, Heming Wang, Sinuo Chen, Danhui Ma, Ye Tao, Xingye Wang, Yanhe Luan, Tiedong Wang, Yan Shi, Guangqi Song, Yicheng Zhao, Xijun Dong, Bingmei Wang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0246610

Adherent and suspension baby hamster kidney cells have a different cytoskeleton and surface receptor repertoire
Cited by: 2
Author(s): Veronika Dill, Florian Pfaff, Aline Zimmer, Martin Beer, Michael Eschbaumer
Software Mentions: 2
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

Bonuses:

Penalties:

Papers Mentioning clusterProfiler 2,223