bioconductor: clusterProfiler | Projects

10.1186/s12935-021-01830-1

The immune‐related biomarker TEK inhibits the development of clear cell renal cell carcinoma (ccRCC) by regulating AKT phosphorylation
Cited by: 10
Author(s): Siming Chen, Mengxue Yu, Lingao Ju, Gang Wang, Kaiyu Qian, Yu Xiao, Xinghuan Wang
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.15285

Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
Cited by: 8
Author(s): Ling Zhang, Qin Han, Zheng Liu, Wei Peng, Han Cao, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12935-020-01572-6

Integrated analysis of immune-related genes in endometrial carcinoma
Cited by: 9
Author(s): Yiru Wang, Yunduo Liu, Yue Guan, Hao Li, Yuan Liu, Mengjun Zhang, Ping Cui, Dan Kong, Xiuwei Chen, Hang Yin
Software Mentions: 2
Published: about 4 years ago

10.1186/s12935-020-01507-1

Comprehensive analysis of key genes associated with ceRNA networks in nasopharyngeal carcinoma based on bioinformatics analysis
Cited by: 9
Author(s): Yujin Xu, Xinyi Huang, Wangzhong Ye, Yangfan Zhang, Changkun Li, Peide Bai, Zhongqiu Lin, Chuanben Chen
Software Mentions: 2
Published: about 4 years ago

10.1186/s12935-021-02138-w

NCAPG promotes the progression of lung adenocarcinoma via the TGF-β signaling pathway
Cited by: 20
Author(s): Yun Wu, Ying Lin, Junfan Pan, Xunwei Tu, Yiquan Xu, Hongru Li, Yu‐Sheng Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12935-021-02190-6

Single cell RNA-seq data and bulk gene profiles reveal a novel signature of disease progression in multiple myeloma
Cited by: 4
Author(s): Zhiyong Zeng, Jizhen Lin, Kejie Zhang, Xizhe Guo, Xiaoqiang Zheng, Apeng Yang, Junmin Chen
Software Mentions: 2
Published: about 3 years ago

10.1186/s12935-019-0852-8

Overexpression of mircoRNA-137 inhibits cervical cancer cell invasion, migration and epithelial–mesenchymal transition by suppressing the TGF-β/smad pathway via binding to GREM1
Cited by: 23
Author(s): Hui Miao, Nuan Wang, Lin-Xin Shi, Zheng Wang, Wenbo Song
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16400

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells
Cited by: 38
Author(s): Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Yang Xi
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13058-019-1241-x

Anillin regulates breast cancer cell migration, growth, and metastasis by non-canonical mechanisms involving control of cell stemness and differentiation
Cited by: 29
Author(s): Dongdong Wang, Nayden G. Naydenov, Mikhail G. Dozmorov, Jennifer E. Koblinski, Andrei I. Ivanov
Software Mentions: 2
Published: almost 5 years ago

10.3390/brainsci11040436

Behavioral and Gene Expression Analysis of Stxbp6-Knockout Mice
Cited by: 2
Author(s): Cong Liu, Qian Hu, Yan Chen, Lingqian Wu, Xionghao Liu, Desheng Liang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41409-019-0766-z

PDGFB-expressing mesenchymal stem cells improve human hematopoietic stem cell engraftment in immunodeficient mice
Cited by: 21
Author(s): Xiuxiu Yin, Linping Hu, Yawen Zhang, Caiying Zhu, Hui Cheng, Xiaowei Xie, Ming Shi, Ping Zhu, Xueying Zhao, Wanqiu Chen, Lu Zhang, Cameron Arakaki, Sha Hao, Mei Wang, Wenbin Cao, Shihui Ma, Xiaobing Zhang, Tao Cheng
Software Mentions: 2
Published: almost 5 years ago

10.1111/jcmm.16563

Integrated microenvironment‐associated genomic profiles identify LRRC15 mediating recurrent glioblastoma‐associated macrophages infiltration
Cited by: 6
Author(s): Haoneng Tang, Wensi Liu, Zhao‐Xu Xu, Jinwen Zhao, Weitao Wang, Zhaojin Yu, Minjie Wei
Software Mentions: 2
Published: over 3 years ago

10.1186/s13068-020-01819-4

Genetic, transcriptional, and regulatory landscape of monolignol biosynthesis pathway in Miscanthus × giganteus
Cited by: 10
Author(s): Xiaofei Zeng, Jiajing Sheng, Fenglin Zhu, Tianzi Wei, Lingling Zhao, Xiaohu Hu, Xianwei Zheng, Fangjian Zhou, Zhongli Hu, Youxiang Diao, Surong Jin
Software Mentions: 2
Published: about 4 years ago

10.1042/BSR20202203

Developing a risk scoring system based on immune-related lncRNAs for patients with gastric cancer
Cited by: 5
Author(s): Yuzhi Wang, Yu Zhong, Yi Zhang, Chengwen Li
Software Mentions: 2
Published: almost 4 years ago

10.1111/acel.13360

Single human oocyte transcriptome analysis reveals distinct maturation stage‐dependent pathways impacted by age
Cited by: 34
Author(s): Sílvia Llonch, Montserrat Barragán, Paula Nieto, Anna Mallol, Marc Elosua-Bayés, Patricia Lorden, Sara Ruiz, Filippo Zambelli, Holger Heyn, Rita Vassena, Bernhard Payer
Software Mentions: 2
Published: over 3 years ago

10.1042/BSR20193101

Comparative analysis of inflammatory signature profiles in eosinophilic and noneosinophilic chronic rhinosinusitis with nasal polyposis
Cited by: 21
Author(s): Yao Yao, Chunguang Yang, Xing Yi, Shaobing Xie, Hong Sun
Software Mentions: 2
Published: almost 5 years ago

10.1042/BSR20192436

Bioinformatics analysis of the potential biomarkers for acute respiratory distress syndrome
Cited by: 3
Author(s): Lin Liao, Liao Pinhu
Software Mentions: 2
Published: about 4 years ago

10.1042/BSR20181441

Bioinformatics identification of crucial genes and pathways associated with hepatocellular carcinoma
Cited by: 34
Author(s): Xueren Gao, Xixi Wang, Shulong Zhang
Software Mentions: 2
Published: about 6 years ago

10.1042/BSR20190996

Integrated analysis of a competing endogenous RNA network in renal cell carcinoma using bioinformatics tools
Cited by: 14
Author(s): Weidong Jiang, Zhihua Ye
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20200743

The roles of MASPIN expression and subcellular localization in non-small cell lung cancer
Cited by: 10
Author(s): Xiao-fei Wang, Bo Liang, Daxiong Zeng, Wei Lei, Chen Cheng, Yanbin Chen, Jianan Huang, Ning Gu, Yehan Zhu
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/9941791

Network Pharmacology and Molecular Docking Study on the Potential Mechanism of Yi-Qi-Huo-Xue-Tong-Luo Formula in Treating Diabetic Peripheral Neuropathy
Cited by: 13
Author(s): Yixuan Lin, Chuqiao Shen, Fanjing Wang, Zhaohui Fang, Guo-Ming Shen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1007684

The TLR4 adaptor TRAM controls the phagocytosis of Gram-negative bacteria by interacting with the Rab11-family interacting protein 2
Cited by: 26
Author(s): Astrid Skjesol, Mariya Yurchenko, Korbinian Bösl, Caroline S. Gravastrand, Kaja Elisabeth Nilsen, Lene Melsæther Grøvdal, Federica Agliano, Francesco Patanè, Germana Lentini, Hera Kim, Giuseppe Teti, A. Sharma, Richard K. Kandasamy, Bjørnar Sporsheim, Kristian K. Starheim, Douglas T. Golenbock, Harald Stenmark, Mary W. McCaffrey, Terje Espevik, Harald Husebye
Software Mentions: 2
Published: over 5 years ago

10.1042/BSR20194429

Identification of cell division cycle 20 as a candidate biomarker and potential therapeutic target in bladder cancer using bioinformatics analysis
Cited by: 4
Author(s): Peilin Shen, Xue‐Jun He, Lan Lin, Ying‐Kai Hong, Mingen Lin
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20210308

RAGE-mediated functional DNA methylated modification contributes to cigarette smoke-induced airway inflammation in mice
Cited by: 5
Author(s): Ping Li, Tao Wang, Mei Chen, Jun Chen, Yongchun Shen, Lei Chen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009476

Intestinal-epithelial LSD1 controls goblet cell maturation and effector responses required for gut immunity to bacterial and helminth infection
Cited by: 10
Author(s): Naveen Parmar, Kyle Burrows, Pia M Vornewald, Håvard T. Lindholm, Rosalie T. Zwiggelaar, Alberto Díez-Sánchez, Mara Martín-Alonso, Madeleine Fosslie, Bruce A. Vallance, John Arne Dahl, Colby Zaph, Menno J. Oudhoff
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.103153

Identification of transforming growth factor beta induced (TGFBI) as an immune-related prognostic factor in clear cell renal cell carcinoma (ccRCC)
Cited by: 14
Author(s): Guo-Wei Du, Xin Yan, Zhao Chun-hua, Ren‐Jie Zhang, Kurerban Tuoheti, Xiaojie Bai, Hua-Hui Wu, Tong-Zu Liu
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20204211

Exploration of the molecular targets and mechanisms of suxiao xintong dropping pills for myocardial infarction by network pharmacology method
Cited by: 3
Author(s): Da-qiu Chen, Yanqing Wu, Yixing Chen, Qiaoxing Chen, Xianhua Ye, Shuai Xu, Shunxiang Luo
Software Mentions: 2
Published: over 3 years ago

10.1007/s13238-019-00662-0

Contact-dependent delivery of IL-2 by dendritic cells to CD4 T cells in the contraction phase promotes their long-term survival
Cited by: 4
Author(s): Dan Tong, Li Zhang, Fei Ning, Ying Xu, Xiaoyu Hu, Yan Shi
Software Mentions: 2
Published: about 5 years ago

10.1186/s12958-021-00771-8

The effect of lysophosphatidic acid-supplemented culture medium on human immature oocytes matured in vitro
Cited by: 7
Author(s): Qingji Xie, Yaxin Xing, Jianhong Zhou, Ling Wang, Jie Wu, Ri‐Cheng Chian
Software Mentions: 2
Published: over 3 years ago

10.3390/biom9020066

Genome-Wide Identification and Characterization of SQUAMOSA—Promoter-Binding Protein (SBP) Genes Involved in the Flowering Development of Citrus Clementina
Cited by: 15
Author(s): Ren‐Fang Zeng, Jingjing Zhou, Shengrui Liu, Zhi-Meng Gan, Jinzhi Zhang, Chun-Gen Hu
Software Mentions: 2
Published: almost 6 years ago

10.3390/biomedicines9091211

Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions
Cited by: 3
Author(s): Yan Yan, Tingting Gu, Stine Duelund Kaas Christensen, Junjing Su, Thomas Ravn Lassen, Marie Vognstoft Hjortbak, IJu Lo, Susanne Trillingsgaard Venø, Anna Zsófia Tóth, Ping Song, Morten S. Nielsen, Hans Erik Bøtker, Blagoy Blagoev, Kim Ryun Drasbek, Jørgen Kjems
Software Mentions: 2
Published: about 3 years ago

10.1186/s12931-020-01414-z

Transcriptomic profiling reveals disease-specific characteristics of epithelial cells in idiopathic pulmonary fibrosis
Cited by: 8
Author(s): Maximilian Boesch, Florent Baty, Martin Brutsche, Michael Tamm, Julien Roux, Lars Knudsen, Amiq Gazdhar, Thomas Geiser, Petra Khan, Katrin Hostettler
Software Mentions: 2
Published: over 4 years ago

10.1186/s12931-021-01797-7

Perturbation of semaphorin and VEGF signaling in ACDMPV lungs due to FOXF1 deficiency
Cited by: 10
Author(s): Justyna A. Karolak, Tomasz Gambin, Przemysław Szafrański, Rebecca L. Maywald, Edwina J. Popek, Jason D. Heaney, Paweł Stankiewicz
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2489175

An Integrated Transcriptomic and Proteomic Analysis Identifies Significant Novel Pathways for Henoch-Schönlein Purpura Nephritis Progression
Cited by: 4
Author(s): Biao Xie, Wei Zhang, Qi Zhang, Qiuju Zhang, Yupeng Wang, Lin Sun, Meina Liu, Ping Zhou
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/6898093

Genomic Expression Profiling and Bioinformatics Analysis of Chronic Recurrent Multifocal Osteomyelitis
Cited by: 3
Author(s): Kai Huang, Bingyuan Lin, Yiyang Liu, Qiaofeng Guo, Haiyong Ren
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/4951692

Comprehensive Analysis of lncRNA-Mediated ceRNA Crosstalk and Identification of Prognostic Biomarkers in Wilms’ Tumor
Cited by: 15
Author(s): Hong Zheng, Bai-Hui Li, Chang Liu, Jia Li, Fengting Liu
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8082697

Identification and Verification of Core Genes in Colorectal Cancer
Cited by: 22
Author(s): Houxi Xu, Yuzhu Ma, Jinzhi Zhang, Jialin Gu, Xianwen Jing, Lu Shen, Shunjun Fu, Jiege Huo
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-22493-5

A Five-microRNA Signature for Survival Prognosis in Pancreatic Adenocarcinoma based on TCGA Data
Cited by: 37
Author(s): Xiuhui Shi, Li Xu, Hang Zhang, Ruizhi He, Yan Zhao, Min Zhou, Shutao Pan, Chunle Zhao, Yechen Feng, Min Wang, Xiaomao Guo, Renyi Qin
Software Mentions: 2
Published: over 6 years ago

10.1155/2021/6650181

miRNA-mRNA Regulatory Network Reveals miRNAs in HCT116 in Response to Folic Acid Deficiency via Regulating Vital Genes of Endoplasmic Reticulum Stress Pathway
Cited by: 4
Author(s): Lin Lü, Hang Zhao, Jianjun Li, Kun Zhang, Xu Wang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-28286-0

Liver clear cell foci and viral infection are associated with non-cirrhotic, non-fibrolamellar hepatocellular carcinoma in young patients from South America
Cited by: 7
Author(s): Luis Cano, Juan Pablo Cerapio, Eloy Ruíz, Agnès Marchio, Bruno Turlin, Sandro Casavilca, Luis Taxa, Guillaume Marti, Eric Deharo, Pascal Pineau, Stéphane Bertani
Software Mentions: 2
Published: over 6 years ago

10.18632/aging.101747

Transcriptome analysis reveals immune-related gene expression changes with age in giant panda (Ailuropoda melanoleuca) blood
Cited by: 16
Author(s): Lianming Du, Qin Liu, Fang Shen, Zhenxin Fan, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1155/2020/3650935

Sex Difference of Ribosome in Stroke-Induced Peripheral Immunosuppression by Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Jianqin Xie, Lu Yapeng, Hongli Sun, Lina Gao, Peipei Song, Zhijun Feng, Chongge You
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-019-43154-1

An Integrated Chemical Proteomics Approach for Quantitative Profiling of Intracellular ADP-Ribosylation
Cited by: 26
Author(s): Karunakaran A. Kalesh, Saulius Lukauskas, Annabel Borg, Ambrosius P. Snijders, Vinay Ayyappan, Anthony K.L. Leung, Dorian O. Haskard, Peter A. DiMaggio
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-43699-1

Common functional alterations identified in blood transcriptome of autoimmune cholestatic liver and inflammatory bowel diseases
Cited by: 17
Author(s): Jerzy Ostrowski, Krzysztof Goryca, Izabella Łazowska, Agnieszka Rogowska, Agnieszka Paziewska, Michalina Dąbrowska, Filip Ambrożkiewicz, Jakub Karczmarski, Aneta Bałabas, Anna Kluska, Magdalena Piątkowska, Natalia Żeber‐Lubecka, Maria Kulecka, Andrzej Habior, Michał Mikula
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8849415

Identification of Multiple Hub Genes and Pathways in Hepatocellular Carcinoma: A Bioinformatics Analysis
Cited by: 8
Author(s): Junwei Liu, Fang Han, Jianyi Ding, Xiaodong Liang, Jie Liu, Dongsheng Huang, Chengwu Zhang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-019-47726-z

Transcriptome profiling of microRNAs associated with latent autoimmune diabetes in adults (LADA)
Cited by: 4
Author(s): Ke Yu, Zhou Huang, Jing Zhou, Jianan Lang, Yan Wang, Xing-Qi Yin, Yuan Zhou, Dong Zhao
Software Mentions: 2
Published: over 5 years ago

10.1155/2018/2954208

Challenges in Stratifying the Molecular Variability of Patient-Derived Colon Tumor Xenografts
Cited by: 17
Author(s): Magdalena Cybulska, Tomasz Olesiński, Krzysztof Goryca, Katarzyna Paczkowska, Małgorzata Statkiewicz, Michał Kopczyński, Aleksandra Grochowska, Katarzyna Unrug-Bielawska, Anita Tyl-Bielicka, Marta Gajewska, Andrzej Mróz, Michalina Dąbrowska, Jakub Karczmarski, Agnieszka Paziewska, Leszek Zając, M. Bednarczyk, Michał Mikula, Jerzy Ostrowski
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.102319

Systematic profiling of alternative splicing events and splicing factors in left- and right-sided colon cancer
Cited by: 20
Author(s): Xiaoliang Huang, Jing Liu, Xiaokui Mo, Liu H, Wei Chen, Ling Huang, J Chen, Chao Tian, Yongsheng Meng, Guojun Wu, Wen Xie, Peter Fj, Liu Z, Weizhong Tang
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.101754

Development of a prognostic index based on an immunogenomic landscape analysis of papillary thyroid cancer
Cited by: 96
Author(s): Peng Lin, Yesong Guo, Lin Shi, Xiao‐Jiao Li, Hong Yang, Yun He, Qing Li, Yi‐Wu Dang, Kang‐Lai Wei, Gang Chen
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.202984

A zinc finger protein gene signature enables bladder cancer treatment stratification
Cited by: 2
Author(s): Jiandong Zhang, Chen Zhang, Peng Cao, Xiang Zheng, Baozhong Yu, Haoyuan Cao, Zihao Gao, Feilong Zhang, Jiyuan Wu, Huawei Cao, Changzhen Hao, Zejia Sun, Wei Wang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2021.103102

MTDH associates with m6A RNA methylation and predicts cancer response for immune checkpoint treatment
Cited by: 3
Author(s): Fen Zhang, Huimei Huang, Yuexiang Qin, Chang‐Han Chen, Li She, Juncheng Wang, Donghai Huang, Qinglai Tang, Yong Liu, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: about 3 years ago

10.1155/2017/8529796

Microarray Analysis and Detection of MicroRNAs Associated with Chronic Thromboembolic Pulmonary Hypertension
Cited by: 17
Author(s): Ran Miao, Ying Wang, Jun Wan, Liubing Dong, Juanni Gong, Jifeng Li, Yunxia Zhang, Wenbo Pang, Zhenguo Zhai, Yuanhua Yang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-020-64193-z

Evaluation of the effects of cell-dispensing using an inkjet-based bioprinter on cell integrity by RNA-seq analysis
Cited by: 7
Author(s): Masayuki Yumoto, Natsuko Hemmi, Naoki Sato, Yudai Kawashima, Koji Arikawa, Keigo Ide, Masahito Hosokawa, Manabu Seo, Haruko Takeyama
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.11950

TGF-β1 promotes colorectal cancer immune escape by elevating B7-H3 and B7-H4viathe miR-155/miR-143 axis
Cited by: 59
Author(s): Xinru Zhou, Yong Mao, Jianjie Zhu, Meng Fang, Qi Chen, Lihua Tao, Rui Li, Fengqing Fu, Cuiping Liu, Hu Y, Weipeng Wang, Hongjian Zhang, Dong Hua, Weichang Chen, Xueguang Zhang
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-020-65479-y

Identification of prognostic signature of non–small cell lung cancer based on TCGA methylation data
Cited by: 17
Author(s): Yifan Wang, Ying Wang, Yongjun Zhang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/9705950

Identification of Long Noncoding RNA Associated ceRNA Networks in Rosacea
Cited by: 3
Author(s): Lian Wang, Ruifeng Lu, Yujia Wang, Xiaoyun Wang, Dan Hao, Xiang Wen, Yanmei Li, Minghui Zeng, Xian Jiang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/4139320

Upregulation of CEP55 Predicts Dismal Prognosis in Patients with Liver Cancer
Cited by: 13
Author(s): Lingpeng Yang, Yang He, Zifei Zhang, Wentao Wang
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.102492

Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients
Cited by: 33
Author(s): Changshun Yang, Yu Zhang, Xiaoqin Xu, Weihua Li
Software Mentions: 2
Published: almost 5 years ago

10.1155/2020/5304578

RNA Sequencing for Gene Expression Profiles in Peripheral Blood Mononuclear Cells with Ankylosing Spondylitis RNA
Cited by: 3
Author(s): Dan Huang, Jian Liu, Yunxiang Cao, Lei Wan, Hui Jiang, Yue Sun, Jianting Wen
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/3962953

Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis
Cited by: 12
Author(s): Wanxue Hu, Qin Xie, Yicong Xu, Xin Tang, Hang Zhao
Software Mentions: 2
Published: over 4 years ago

10.1155/2021/5520053

Genome-Wide MicroRNA Analysis of Peripheral Blood Mononuclear Cells Reveals Elevated miR-142-3p Expression as a Potential Biomarker for Secondary Syphilis
Cited by: 1
Author(s): Zhenghan Yang, Xiumin Yang, Zhaoyan Gan, Yuan Liang, Wei Liu, Chaozeng Si
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1807089

Aberrant Methylation and Differential Expression of SLC2A1, TNS4, GAPDH, ATP8A2, and CASZ1 Are Associated with the Prognosis of Lung Adenocarcinoma
Cited by: 16
Author(s): Xia Wang, Dongming Shi, Dan Zhao, Dongyan Hu
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/7170464

Long Noncoding RNA THAP9-AS1 and TSPOAP1-AS1 Provide Potential Diagnostic Signatures for Pediatric Septic Shock
Cited by: 6
Author(s): Yong Wu, Qi-Gai Yin, Xiaobao Zhang, Ping Zhu, Hengfei Luan, Ying Chen
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/6676107

Plasma-Derived Exosomal hsa-miR-4488 and hsa-miR-1228-5p: Novel Biomarkers for Dermatomyositis-Associated Interstitial Lung Disease with Anti-Melanoma Differentiation-Associated Protein 5 Antibody-Positive Subset
Cited by: 10
Author(s): Danli Zhong, Caimei Wu, Dong Xu, Jingjing Bai, Qian Wang, Xiaofeng Zeng
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/9081852

Five-mRNA Signature for the Prognosis of Breast Cancer Based on the ceRNA Network
Cited by: 12
Author(s): Wenjie Shi, Duanmin Hu, Shan‐Yang Lin, Rui Zhuo
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-75012-w

Comprehensive analysis of the expression of SLC30A family genes and prognosis in human gastric cancer
Cited by: 10
Author(s): Yongdong Guo, Yutong He
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/5561569

LC-MS/MS-Based Quantitative Proteomics Analysis of Different Stages of Non-Small-Cell Lung Cancer
Cited by: 15
Author(s): Murong Zhou, Yi Kong, Xiaobin Wang, Wen Li, Si Chen, Li Wang, Chengbin Wang, Qian Zhang
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4612375

Association between APOBEC3H-Mediated Demethylation and Immune Landscape in Head and Neck Squamous Carcinoma
Cited by: 6
Author(s): Qin Liu, Yong Luo, Ruoyan Cao, Xue Pan, Xijuan Chen, Siyuan Zhang, Weilin Zhang, Jiaju Zhou, Bin Cheng, Xianyue Ren
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8062902

Comprehensive Study of Different Expressed Genes and Their Functional Modules in Anesthesia for Off-Pump Coronary Artery Bypass Grafting
Cited by: 1
Author(s): Hui Zhou, Min Wang, Zhihua Zhu
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.102477

Identification of prognostic genes in the acute myeloid leukemia microenvironment
Cited by: 31
Author(s): Shaoxin Huang, Biyu Zhang, Wei Fan, Qihan Zhao, Lei Yang, Xin Wang, Denggang Fu
Software Mentions: 2
Published: about 5 years ago

10.3390/biology10080761

Identification of Potentially Related Genes and Mechanisms Involved in Skeletal Muscle Atrophy Induced by Excessive Exercise in Zebrafish
Cited by: 6
Author(s): Chaofen Sun, Zuoqiong Zhou, Zhanglin Chen, Runkang Zhu, Dong Kwon Yang, Xiyang Peng, Lan Zheng, Cui Tang
Software Mentions: 2
Published: over 3 years ago

10.1186/s40659-021-00334-6

Identification of blood-derived candidate gene markers and a new 7-gene diagnostic model for multiple sclerosis
Cited by: 13
Author(s): Xin Chen, Huilian Hou, Huimin Qiao, Haolong Fan, Tianyi Zhao, Mei Dong
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-020-75778-z

QTL mapping and candidate gene analysis of seed vigor-related traits during artificial aging in wheat (Triticum aestivum)
Cited by: 13
Author(s): Huawei Shi, Wanghui Guan, Yugang Shi, Shuguang Wang, Houbao Fan, Jinwen Yang, Weiguo Chen, Wenjun Zhang, Daizhen Sun, Ruilian Jing
Software Mentions: 2
Published: almost 4 years ago

10.6026/97320630015480

Identification of putative drought-responsive genes in rice using gene co-expression analysis
Cited by: 22
Author(s): Yan-Mei Lv, Lei Xu, Komivi Dossa, Kun Zhou, Mei-Ling Zhu, Hongjun Xie, Tang Shan-jun, Yaying Yu, Ximing Guo, Bin Zhou
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.17081

Analysis ofBos taurusandSus scrofaX and Y chromosome transcriptome highlights reproductive driver genes
Cited by: 5
Author(s): Faheem Ahmed Khan, Hui Liu, Hao Zhou, Kai Wang, Muhammad Tahir ul Qamar, Nuruliarizki Shinta Pandupuspitasari, Shujun Zhang
Software Mentions: 2
Published: over 7 years ago

10.1093/bioinformatics/btaa1089

PC2P: parameter-free network-based prediction of protein complexes
Cited by: 17
Author(s): Sara Omranian, Aleksandra Angeleska, Zoran Nikoloski
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/6285987

Construction and Investigation of MicroRNA-mRNA Regulatory Network of Gastric Cancer with Helicobacter pylori Infection
Cited by: 1
Author(s): Ping Yang, Junjie Liu, Tian‐Ci Yang, Lei Zhang, Peiyou Gong, Boqing Li, Xiuzhi Zhou
Software Mentions: 2
Published: over 4 years ago

10.1042/BCJ20200309

Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics
Cited by: 19
Author(s): Dominic P. Byrne, Christopher J. Clarke, Philip Brownridge, Anton Kalyuzhnyy, Simon Perkins, Amy E. Campbell, David Mason, Andrew R. Jones, Patrick A. Eyers
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-82931-9

Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2
Cited by: 9
Author(s): Linda L. Boshans, Heun Soh, William M. Wood, Timothy M. Nolan, Ion Mǎndoiu, Yuchio Yanagawa, Anastasios V. Tzingounis, Akiko Nishiyama
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12894-021-00875-8

Identification of novel biomarkers in Hunner’s interstitial cystitis using the CIBERSORT, an algorithm based on machine learning
Cited by: 11
Author(s): Kaining Lu, Shan Wei, Zhengyi Wang, Kerong Wu, Junhui Jiang, Zejun Yan, Yufeng Cheng
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.22240

A core program of gene expression characterizes cancer metastases
Cited by: 16
Author(s): Franz Hartung, Yunguan Wang, Bruce J. Aronow, Georg F. Weber
Software Mentions: 2
Published: about 7 years ago

10.1186/s12870-020-02649-0

Application of compound material alleviates saline and alkaline stress in cotton leaves through regulation of the transcriptome
Cited by: 11
Author(s): Mengjie An, Xiaoli Wang, Doudou Chang, Shuai Wang, Dashuang Hong, Houbao Fan, Kaiyong Wang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12866-021-02157-7

Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200
Cited by: 4
Author(s): Kun Chen, Lihui Wang, Hua Chen, Chong Zhang, Shanshan Wang, Panpan Chu, Shaokang Li, Huiwen Fu, Tao Sun, Menghan Liu, Qiang Yang, Huasong Zou
Software Mentions: 2
Published: over 3 years ago

10.1186/s12866-017-1030-6

Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment
Cited by: 6
Author(s): Katherine García, Cristian Yáñez, Nicolás Plaza, Francisca Peña, Pedro Sepúlveda, Diliana Pérez-Reytor, Romilio T. Espejo
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-87420-7

Molecular mechanisms detected in yak lung tissue via transcriptome-wide analysis provide insights into adaptation to high altitudes
Cited by: 8
Author(s): Qian Ge, Yongbo Guo, Wangshan Zheng, Shengguo Zhao, Yuan Cai, Xuebin Qi
Software Mentions: 2
Published: over 3 years ago

10.1186/s12881-020-01145-4

Development of an immunogenomic landscape for the competing endogenous RNAs network of peri-implantitis
Cited by: 7
Author(s): Li Yang, Jie Zheng, Chan Juan Gong, Keng Fu Lan, Yu Qing Shen, Xiao Jun Ding
Software Mentions: 2
Published: about 4 years ago

10.1186/s12881-019-0771-5

The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma
Cited by: 13
Author(s): Maria S. Fedorova, George S. Krasnov, E. N. Lukyanova, Andrew R. Zaretsky, Alexey A. Dmitriev, Nataliya V. Melnikova, Alexey Moskalev, Sergey L. Kharitonov, Elena A. Pudova, Zulfiya G. Guvatova, Anastasiya A. Kobelyatskaya, Irina A. Ishina, Е. Н. Славнова, Anastasiya V. Lipatova, М. А. Черниченко, Д. В. Сидоров, A. Yu. Popov, Marina V. Kiseleva, А. Д. Каприн, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 2
Published: over 5 years ago

10.1186/s12916-021-02044-y

Oral vitamin D supplementation induces transcriptomic changes in rectal mucosa that are linked to anti-tumour effects
Cited by: 6
Author(s): P G Vaughan-Shaw, Graeme R. Grimes, James P. Blackmur, Maria Timofeeva, Marion Walker, Li Yin Ooi, Victoria Svinti, Kevin Donnelly, Farhat V N Din, Susan M. Farrington, Malcolm Dunlop
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89224-1

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
Cited by: 12
Author(s): Urminder Singh, Kyle M. Hernandez, Bruce J. Aronow, Eve Syrkin Wurtele
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90112-x

Multi‐omics analysis reveals the interaction between the complement system and the coagulation cascade in the development of endometriosis
Cited by: 45
Author(s): Liang Yu, Huaji Shen, Xiaohan Ren, Anqi Wang, Shu Zhu, Yafeng Zheng, Xiuli Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-021-07741-9

Transcriptome profiling of the diaphragm in a controlled mechanical ventilation model reveals key genes involved in ventilator-induced diaphragmatic dysfunction
Cited by: 6
Author(s): Ruining Liu, Gang Li, Hongwei Ma, Xianlong Zhou, Pengcheng Wang, Yan Zhao
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.203194

Shifting epigenetic contexts influence regulatory variation and disease risk
Cited by: 1
Author(s): Daniel Richard, Terence D. Capellini
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92779-8

Untargeted metabolomics and transcriptomics identified glutathione metabolism disturbance and PCS and TMAO as potential biomarkers for ER stress in lung
Cited by: 5
Author(s): Zijing Wang, Peng Ma, Yisa Wang, Biyu Hou, Can Zhou, He Tian, Bowen Li, Guanghou Shui, Xiuying Yang, Guifen Qiang, Chengqian Yin, Guanhua Du
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-021-07938-y

Ischemic stroke induces cardiac dysfunction and alters transcriptome profile in mice
Cited by: 7
Author(s): Jie Chen, Jiahong Gong, Haili Chen, Xuqing Li, Li Wang, Xinming Qian, Kejun Zhou, Ting Wang, Songhe Jiang, Lei Li, Shengcun Li
Software Mentions: 2
Published: about 3 years ago

10.1186/s12864-020-6637-6

Identification and integrated analysis of glyphosate stress-responsive microRNAs, lncRNAs, and mRNAs in rice using genome-wide high-throughput sequencing
Cited by: 14
Author(s): Rongrong Zhai, Shenghai Ye, Guoqiang Zhu, Yanting Lu, Jing Ye, Faming Yu, Chu Qiren, Xiaoming Zhang
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.103024

Systematic analysis of bacteriostatic mechanism of flavonoids using transcriptome and its therapeutic effect on vaginitis
Cited by: 10
Author(s): Zeyan Lin, Yanyan Lin, Zhengbing Zhang, Jin-Xing Shen, Caimei Yang, Meijiao Jiang, Yongming Hou
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-021-07665-4

Structural variations in papaya genomes
Cited by: 9
Author(s): Zhenyang Liao, Xunxiao Zhang, Shengcheng Zhang, Zhicong Lin, Xingtan Zhang, Ray Ming
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-018-4732-8

CoNVaQ: a web tool for copy number variation-based association studies
Cited by: 21
Author(s): Simon J. Larsen, Luísa Matos do Canto, Sílvia Regina Rogatto, Jan Baumbach
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20102491

Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20163930

Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (Sesamum indicum L.)
Cited by: 45
Author(s): Komivi Dossa, Marie Ali Mmadi, Rong Zhou, Tianyuan Zhang, Ruqi Su, Yujuan Zhang, Linhai Wang, Jun You
Software Mentions: 2
Published: over 5 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223