bioconductor: clusterProfiler | Projects

10.1038/s41598-020-75778-z

QTL mapping and candidate gene analysis of seed vigor-related traits during artificial aging in wheat (Triticum aestivum)
Cited by: 13
Author(s): Huawei Shi, Wanghui Guan, Yugang Shi, Shuguang Wang, Houbao Fan, Jinwen Yang, Weiguo Chen, Wenjun Zhang, Daizhen Sun, Ruilian Jing
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/7182914

Integrative Network Analysis Revealed Genetic Impact of Pyruvate Kinase L/R on Hepatocyte Proliferation and Graft Survival after Liver Transplantation
Cited by: 2
Author(s): Zhengtao Liu, Junsheng Zhao, Qianqian Wang, Hai Zhu, Junjie Qian, Shuai Wang, Shuping Que, Feng Zhang, Shengyong Yin, Lin Zhou, Lei Geng, Shusen Zheng
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-82931-9

Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2
Cited by: 9
Author(s): Linda L. Boshans, Heun Soh, William M. Wood, Timothy M. Nolan, Ion Mǎndoiu, Yuchio Yanagawa, Anastasios V. Tzingounis, Akiko Nishiyama
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2021.643036

Diagnostic and Predictive Value of Immune-Related Genes in Crohn’s Disease
Cited by: 15
Author(s): Bing Yu, Yuqing Yin, Yanping Tang, Kang‐Lai Wei, Zhigang Pan, Kezhi Li, Xianwen Guo, Bang-li Hu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87420-7

Molecular mechanisms detected in yak lung tissue via transcriptome-wide analysis provide insights into adaptation to high altitudes
Cited by: 8
Author(s): Qian Ge, Yongbo Guo, Wangshan Zheng, Shengguo Zhao, Yuan Cai, Xuebin Qi
Software Mentions: 2
Published: over 5 years ago

10.3390/nu10081047

Coffee Consumption and Whole-Blood Gene Expression in the Norwegian Women and Cancer Post-Genome Cohort
Cited by: 10
Author(s): Runa Borgund Barnung, Therese Haugdahl Nøst, Stine Marie Ulven, Guri Skeie, Anja Olsen
Software Mentions: 2
Published: almost 8 years ago

10.3389/fimmu.2019.02956

Profile of Histone H3 Lysine 4 Trimethylation and the Effect of Lipopolysaccharide/Immune Complex-Activated Macrophages on Endotoxemia
Cited by: 12
Author(s): Vichaya Ruenjaiman, Patcharavadee Butta, Yu-Wei Leu, Monnat Pongpanich, Asada Leelahavanichkul, Patipark Kueanjinda, Tanapat Palaga
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-89224-1

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors associated with immunologic functions and environmental exposures
Cited by: 12
Author(s): Urminder Singh, Kyle M. Hernandez, Bruce J. Aronow, Eve Syrkin Wurtele
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-90112-x

Multi‐omics analysis reveals the interaction between the complement system and the coagulation cascade in the development of endometriosis
Cited by: 45
Author(s): Liang Yu, Huaji Shen, Xiaohan Ren, Anqi Wang, Shu Zhu, Yafeng Zheng, Xiuli Wang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92779-8

Untargeted metabolomics and transcriptomics identified glutathione metabolism disturbance and PCS and TMAO as potential biomarkers for ER stress in lung
Cited by: 5
Author(s): Zijing Wang, Peng Ma, Yisa Wang, Biyu Hou, Can Zhou, He Tian, Bowen Li, Guanghou Shui, Xiuying Yang, Guifen Qiang, Chengqian Yin, Guanhua Du
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.700031

Discovery of Novel Biomarkers for Diagnosing and Predicting the Progression of Multiple Sclerosis Using TMT-Based Quantitative Proteomics
Cited by: 10
Author(s): Yijun Shi, Yaowei Ding, Guoge Li, Limin Wang, Rasha Alsamani Osman, Jialu Sun, Lingye Qian, Guanghui Zheng, Guojun Zhang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fimmu.2020.01709

Toxoplasma gondii Dense Granule Proteins 7, 14, and 15 Are Involved in Modification and Control of the Immune Response Mediated via NF-κB Pathway
Cited by: 21
Author(s): Fumie Ihara, Ragab M. Fereig, Yuu Himori, Kyohko Kameyama, Kosuke Umeda, Sadao Tanaka, Rina Ikeda, Masahiro Yamamoto, Yoshifumi Nishikawa
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/8951907

Baicalin Represses C/EBPβ via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: about 6 years ago

10.3389/fmolb.2020.602328

Prognostic Biomarker TP53 Mutations for Immune Checkpoint Blockade Therapy and Its Association With Tumor Microenvironment of Lung Adenocarcinoma
Cited by: 25
Author(s): Xinqing Lin, Liqiang Wang, Xiaohong Xie, Yinyin Qin, Zhanhong Xie, Ming Ouyang, Chengzhi Zhou
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.598427

An Extracellular Matrix-Based Signature Associated With Immune Microenvironment Predicts the Prognosis and Therapeutic Responses of Patients With Oesophageal Squamous Cell Carcinoma
Cited by: 8
Author(s): Hongpan Zhang, Qi Shi, Zhihao Yang, Kaige Wang, Zhe Zhang, Zheng Huang, Xiaobin Cui, Feng Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.724451

Genome of Ganoderma Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for Ganoderma tsugae
Cited by: 12
Author(s): Nan Jiang, Shuang Hu, Bing Peng, Zhenhao Li, Xiaohui Yuan, Shijun Xiao, Yongping Fu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.606482

Effects of Peptide Thanatin on the Growth and Transcriptome of Penicillium digitatum
Cited by: 8
Author(s): Guo-Gang Feng, Xindan Li, Wenjun Wang, Lili Deng, Kaifang Zeng
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2020.562416

Phosphatase and Tensin Homolog Mutation in Immune Cell Infiltration and Clinicopathological Features of Low-Grade Gliomas
Cited by: 2
Author(s): Feng Peng, Zhenqing Li, Yuchen Li, Yuelin Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmolb.2021.728932

RhoA/ROCK-YAP/TAZ Axis Regulates the Fibrotic Activity in Dexamethasone-Treated Human Trabecular Meshwork Cells
Cited by: 15
Author(s): Zhicheng Liu, Shanshan Li, Xiuqing Qian, Lin Li, Haixia Zhang
Software Mentions: 2
Published: almost 5 years ago

10.18632/aging.102492

Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients
Cited by: 33
Author(s): Changshun Yang, Yu Zhang, Xiaoqin Xu, Weihua Li
Software Mentions: 2
Published: over 6 years ago

10.1042/BSR20193101

Comparative analysis of inflammatory signature profiles in eosinophilic and noneosinophilic chronic rhinosinusitis with nasal polyposis
Cited by: 21
Author(s): Yao Yao, Chunguang Yang, Xing Yi, Shaobing Xie, Hong Sun
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-021-08305-6

Characterization of alternative splicing events and prognostic signatures in breast cancer
Cited by: 1
Author(s): Pihua Han, Jianguo Zhu, Guang Feng, Zizhang Wang, Yanni Ding
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.203154

Pan-cancer analysis reveals an immunological role and prognostic potential of PXN in human cancer
Cited by: 11
Author(s): Yun Chen, Zaizhu Han, Yan Xiao, Pan Shen, Li Tan, Shaohui Zhang, Qiong Liu, Zhengrong Gao, Jie Zhao, Ya‐Qiong Zhao, Yue Guo, Yun‐Zhi Feng
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/6642600

Network Pharmacology-Based Approach to Comparatively Predict the Active Ingredients and Molecular Targets of Compound Xueshuantong Capsule and Hexuemingmu Tablet in the Treatment of Proliferative Diabetic Retinopathy
Cited by: 5
Author(s): Hongyan Yao, Danli Xin, Zongyi Zhan, Zijing Li
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.17081

Analysis ofBos taurusandSus scrofaX and Y chromosome transcriptome highlights reproductive driver genes
Cited by: 5
Author(s): Faheem Ahmed Khan, Hui Liu, Hao Zhou, Kai Wang, Muhammad Tahir ul Qamar, Nuruliarizki Shinta Pandupuspitasari, Shujun Zhang
Software Mentions: 2
Published: over 9 years ago

10.1186/s13073-020-00776-9

Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions
Cited by: 115
Author(s): Wei Lin, Pawan Noel, Erkut Borazanci, Jeeyun Lee, Albert Amini, In Woong Han, Jin Seok Heo, Gayle Jameson, Cory R. Fraser, Margaux Steinbach, Yanghee Woo, Yuman Fong, Derek Cridebring, Daniel D. Von Hoff, Joon Oh Park, Haiyong Han
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.7360

A 3-mRNA-based prognostic signature of survival in oral squamous cell carcinoma
Cited by: 22
Author(s): Ruoyan Cao, Qiqi Wu, Qiulan Li, Meiling Yao, Hongbo Zhou
Software Mentions: 2
Published: about 7 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.9767

Characterization of the transcriptional response of Candida parapsilosis to the antifungal peptide MAF-1A
Cited by: 4
Author(s): Rong Cheng, Wei Li, Klarke M. Sample, Qiang Xu, Lin Liu, Fangfang Yu, Yingjie Nie, Xiangyan Zhang, Zhenhua Luo
Software Mentions: 2
Published: almost 6 years ago

10.1186/s41065-020-00142-0

Identification of potential crucial genes and key pathways in osteosarcoma
Cited by: 18
Author(s): Junwei Liu, Siyu Wu, Xiaoyu Xie, Ziming Wang, Qinghua Lei
Software Mentions: 2
Published: about 6 years ago

10.1038/s41419-021-03679-8

ATF3 deficiency impairs the proliferative–secretory phase transition and decidualization in RIF patients
Cited by: 14
Author(s): Zhilong Wang, Yang Liu, Jingyu Liu, Na Kong, Yue Jiang, Ruiwei Jiang, Xin Zhen, Jidong Zhou, Chao‐Jun Li, Haixiang Sun, Guijun Yan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-020-07391-2

Development and validation of a novel pseudogene pair-based prognostic signature for prediction of overall survival in patients with hepatocellular carcinoma
Cited by: 6
Author(s): Yajuan Du, Ying Gao
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-021-00519-w

The genome of the warm-season turfgrass African bermudagrass (Cynodon transvaalensis)
Cited by: 16
Author(s): Fengchao Cui, Geli Taier, Manli Li, Xiaoxia Dai, Nan Hang, Xunzhong Zhang, Xiangfeng Wang, Kehua Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-020-0314-4

Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
Cited by: 34
Author(s): Lei Zhang, Yan Yu, Tianye Shi, Meng Kou, Jian Sun, Tao Xu, Qiang Li, Shaoyuan Wu, Qinghe Cao, Wenqian Hou, Zongyun Li
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.22240

A core program of gene expression characterizes cancer metastases
Cited by: 16
Author(s): Franz Hartung, Yunguan Wang, Bruce J. Aronow, Georg F. Weber
Software Mentions: 2
Published: almost 9 years ago

10.1002/iid3.373

Five immune‐gene‐signatures participate in the development and pathogenesis of Kawasaki disease
Cited by: 11
Author(s): Han Nie, Shizhi Wang, Qiong Wu, Danni Xue, Weimin Zhou
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: almost 6 years ago

10.1001/jamanetworkopen.2020.35048

Molecular Diversity of Clinically Stable Human Kidney Allografts
Cited by: 8
Author(s): Dmitry Rychkov, Swastika Sur, Marina Sirota, Minnie M. Sarwal
Software Mentions: 2
Published: over 5 years ago

10.1186/s12885-021-07845-1

Inhibitory effect of sodium butyrate on colorectal cancer cells and construction of the related molecular network
Cited by: 16
Author(s): Yang Xi, Zhuang Jing, Wei Wu, Chun Zhang, Qi Qi, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/2109325

Disease-Specific Autoantibodies Induce Trained Immunity in RA Synovial Tissues and Its Gene Signature Correlates with the Response to Clinical Therapy
Cited by: 3
Author(s): Xiaoli Dai, Xiaoqiu Dai, Zheng Gong, Chen Yang, Keqin Zeng, Fang‐Yuan Gong, Qiao Zhong, Xiao‐Ming Gao
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.140364

Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility
Cited by: 11
Author(s): Albert Busch, Jessica Pauli, Greg Winski, Sonja Bleichert, Ekaterina Chernogubova, Susanne Metschl, Hanna Winter, Matthias Trenner, Armin Wiegering, Christoph Otto, Johannes Fischer, Judith Reiser, Julia Werner, Joy Roy, Christine Brostjan, Christoph Knappich, Hans‐Henning Eckstein, Valentina Paloschi, Lars Maegdefessel
Software Mentions: 2
Published: about 5 years ago

10.26508/lsa.202000672

MALDI-IMS combined with shotgun proteomics identify and localize new factors in male infertility
Cited by: 6
Author(s): Shibojyoti Lahiri, Wasim Aftab, Lena Walenta, Leena Strauss, Matti Poutanen, Artur Mayerhofer, Axel Imhof
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11986

Screening and identification of NOTCH1, CDKN2A, and NOS3 as differentially expressed autophagy-related genes in erectile dysfunction
Cited by: 1
Author(s): Chao Luo, Xiongcai Zhou, Li Wang, Qinyu Zeng, Junhong Fan, Shuhua He, Haibo Zhang, Anyang Wei
Software Mentions: 2
Published: almost 5 years ago

10.7150/jca.35854

Combining Bioinformatics and Experiments to Identify and Verify Key Genes with Prognostic Values in Endometrial Carcinoma
Cited by: 25
Author(s): Wenchao Zhang, Lingling Gao, Caixia Wang, Shuang Wang, Di Sun, Xiao Li, Miao Liu, Yue Qi, Juanjuan Liu, Bei Lin
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0220118

Molecular network-based identification of competing endogenous RNAs in bladder cancer
Cited by: 15
Author(s): Weidong Jiang, Pingcheng Yuan
Software Mentions: 2
Published: about 7 years ago

10.7150/jca.46328

Development and validation of a DNA repair gene signature for prognosis prediction in Colon Cancer
Cited by: 9
Author(s): Xin Wang, Cong Tan, Min Ye, Xu Wang, Wei-Hung Weng, Meng Zhang, Shujuan Ni, Lei Wang, Dan Huang, Zhaohui Huang, Ming Xu, Weiqi Sheng
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-021-08434-y

Comprehensive analysis of suppressor of cytokine signaling proteins in human breast Cancer
Cited by: 9
Author(s): Mingyu Sun, Cheng Tang, Jun Li, Wenli Jiang, Haifeng Yu, Dong Fang, Chun Huang, Youlutuziayi Rixiati
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-07075-x

Immune-related genes in tumor-specific CD4+ and CD8+ T cells in colon cancer
Cited by: 15
Author(s): Yang Xi, Wei Wu, Yuefen Pan, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: about 6 years ago

10.1186/s40001-019-0381-x

Identification of key genes involved in myocardial infarction
Cited by: 21
Author(s): Linlin Qiu, Xueqing Liu
Software Mentions: 2
Published: about 7 years ago

10.18632/aging.101749

Expression and gene regulation network of RBM8A in hepatocellular carcinoma based on data mining
Cited by: 48
Author(s): Yan Lin, Rong Liang, Yufen Qiu, Yufeng Lv, Jinyan Zhang, Gang Qin, Chunling Yuan, Zhihui Liu, Yongqiang Li, Donghua Zou, Ying Mao
Software Mentions: 2
Published: over 7 years ago

10.1080/22221751.2021.1915184

Transcriptional signatures of human peripheral blood mononuclear cells can identify the risk of tuberculosis progression from latent infection among individuals with silicosis
Cited by: 4
Author(s): Qingwei Ruan, Qin Yang, Yixin Gao, Jing Wu, Siran Lin, Jingyu Zhou, Lingyun Shao, Sen Wang, Qianqian Liu, Yan Gao, Ning Jiang, Wenhong Zhang
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6574

Physiological adaptations to sugar‐mimic alkaloids: Insights from Bombyx mori for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: almost 6 years ago

10.7150/jca.51141

6 Circulating miRNAs can be used as Non-invasive Biomarkers for the Detection of Cervical Lesions
Cited by: 6
Author(s): Ruoqi Ning, Silu Meng, Lin Wang, Yulin Jia, Fangxu Tang, Haiying Sun, Zhi Zhang, Chong Zhang, Xinran Fan, Bing Xiao, Chunhua Yang, Shuang Li
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6508

Genetic adaptation of Tibetan poplar ( Populus szechuanica var. tibetica ) to high altitudes on the Qinghai–Tibetan Plateau
Cited by: 4
Author(s): Chenfei Zheng, Tan Li-zhi, Mengmeng Sang, Meixia Ye, Rongling Wu
Software Mentions: 2
Published: almost 6 years ago

10.1111/jcmm.14071

Lnc <scp>RNA KCNQ</scp> 1 <scp>OT</scp> 1 enhanced the methotrexate resistance of colorectal cancer cells by regulating miR‐760/ <scp>PPP</scp> 1R1B via the <scp>cAMP</scp> signalling pathway
Cited by: 55
Author(s): Di Xian, Yu Zhao
Software Mentions: 2
Published: over 7 years ago

10.15252/embr.202050893

PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesis
Cited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: over 5 years ago

10.1186/s12896-020-00667-2

Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures
Cited by: 8
Author(s): Dylan G. Chitwood, Qinghua Wang, Kathryn Elliott, Aiyana Bullock, Dwon Jordana, Zhigang Li, Cathy H. Wu, Sarah W. Harcum, Christopher Saski
Software Mentions: 2
Published: over 5 years ago

10.1186/s12935-019-0852-8

Overexpression of mircoRNA-137 inhibits cervical cancer cell invasion, migration and epithelial–mesenchymal transition by suppressing the TGF-β/smad pathway via binding to GREM1
Cited by: 23
Author(s): Hui Miao, Nuan Wang, Lin-Xin Shi, Zheng Wang, Wenbo Song
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20081958

The Effects of Epigallocatechin Gallate (EGCG) on Pulmonary Fibroblasts of Idiopathic Pulmonary Fibrosis (IPF)—A Next-Generation Sequencing and Bioinformatic Approach
Cited by: 25
Author(s): Ming‐Ju Tsai, Wei‐An Chang, Ssu‐Hui Liao, Kai‐Chih Chang, Chau‐Chyun Sheu, Po‐Lin Kuo
Software Mentions: 2
Published: over 7 years ago

10.1038/s41419-021-03499-w

Establishment of a novel mesenchymal stem cell-based regimen for chronic myeloid leukemia differentiation therapy
Cited by: 5
Author(s): Shiman Zuo, Lijuan Sun, Yuxin Wang, Bing Chen, Jingyue Wang, Xin Ge, Yan Lu, Nanfei Yang, Pingping Shen
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/4108474

Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer
Cited by: 32
Author(s): Wei Xu, Jun Lü, Qiang Zhao, Jun Wu, Jingyong Sun, Baohui Han, Xiaodong Zhao, Yani Kang
Software Mentions: 2
Published: over 7 years ago

10.1111/jcmm.15285

Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
Cited by: 8
Author(s): Ling Zhang, Qin Han, Zheng Liu, Wei Peng, Han Cao, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12915-020-00792-6

Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human
Cited by: 27
Author(s): Shuli Liu, Ying Yu, Shengli Zhang, John B. Cole, Albert Tenesa, Ting Wang, T. G. McDaneld, Li Ma, George E. Liu, Lingzhao Fang
Software Mentions: 2
Published: about 6 years ago

10.1186/s12943-021-01342-6

Identification of tumor antigens and immune subtypes of cholangiocarcinoma for mRNA vaccine development
Cited by: 66
Author(s): Xing Huang, Tianyu Tang, Gang Zhang, Tingbo Liang
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8866730

Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Chengquan Shen, Ting Xu, Yandong Sun, Liping Wang, Zhijuan Liang, Haitao Niu, Wei Jiao, Yonghua Wang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0252906

A network pharmacology approach to determine the underlying mechanisms of action of Yishen Tongluo formula for the treatment of oligoasthenozoospermia
Cited by: 4
Author(s): Yangdi Chen, Fanggang Bi, Zi-Xue Sun
Software Mentions: 2
Published: about 5 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.11488

Involvement of plasminogen activator inhibitor-1 and its related molecules in atrial fibrosis in patients with atrial fibrillation
Cited by: 1
Author(s): Qiaoqiao Li, Ying-Yu Lai, Xiaoyan Gao, Xin Li, Chunyu Deng, Huiming Guo, Junfei Zhao, Hui Yang, Yu‐wen Xu, Shulin Wu, Yan Xue, Fang Rao
Software Mentions: 2
Published: about 5 years ago

10.1186/s12935-021-02190-6

Single cell RNA-seq data and bulk gene profiles reveal a novel signature of disease progression in multiple myeloma
Cited by: 4
Author(s): Zhiyong Zeng, Jizhen Lin, Kejie Zhang, Xizhe Guo, Xiaoqiang Zheng, Apeng Yang, Junmin Chen
Software Mentions: 2
Published: almost 5 years ago

10.1111/jcmm.16400

Cytoglobin promotes sensitivity to ferroptosis by regulating p53‐YAP1 axis in colon cancer cells
Cited by: 38
Author(s): Shazhou Ye, Mingjun Xu, Tingwei Zhu, Jiayi Chen, Shanping Shi, Haizhong Jiang, Qingfang Zheng, Qi Liao, Xiaoyun Ding, Yang Xi
Software Mentions: 2
Published: over 5 years ago

10.3390/ani10112184

Liver Expression of IGF2 and Related Proteins in ZBED6 Gene-Edited Pig by RNA-Seq
Cited by: 4
Author(s): Hailin Zhao, Mingli Wu, Shirong Liu, Xiaoqin Tang, Xiaohua Yi, Li Qi, Shuhui Wang, Xiuzhu Sun
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16563

Integrated microenvironment‐associated genomic profiles identify LRRC15 mediating recurrent glioblastoma‐associated macrophages infiltration
Cited by: 6
Author(s): Haoneng Tang, Wensi Liu, Zhao‐Xu Xu, Jinwen Zhao, Weitao Wang, Zhaojin Yu, Minjie Wei
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms20102491

Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: about 7 years ago

10.1038/s41419-020-03240-z

Hypomethylation of PlncRNA-1 promoter enhances bladder cancer progression through the miR-136-5p/Smad3 axis
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Author(s): Weiting Kang, Qiang Wang, Ying Dai, Hanbo Wang, Muwen Wang, Jin Wang, Dong Zhang, Peng Sun, Taiguo Qi, Xunbo Jin, Zilian Cui
Software Mentions: 2
Published: over 5 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: almost 6 years ago

10.3390/ani10101792

Genome-Wide Characterization and Comparative Analyses of Simple Sequence Repeats among Four Miniature Pig Breeds
Cited by: 4
Author(s): Hongyang Wang, Yang Fu, Peng Gu, Yingying Zhang, Weilong Tu, Zhe Chao, Huali Wu, Jian Cao, Xiang Zhou, Bang Liu, Jennifer J. Michal, Chun Chieh Fan, Yongsong Tan
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.9704

miR-224, miR-147b and miR-31 associated with lymph node metastasis and prognosis for lung adenocarcinoma by regulating PRPF4B, WDR82 or NR3C2
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Author(s): Yan Wang, Shengtao Shang, Kun Yu, Hongbin Sun, Wenrui Ma, Wei Zhao
Software Mentions: 2
Published: over 5 years ago

10.1186/s13041-019-0507-7

Dysregulation of neuron differentiation in an autistic savant with exceptional memory
Cited by: 11
Author(s): Jinjing Song, Xudong Yang, Ying Zhou, Lei Chen, Xu Zhang, Zhuxi Liu, Weibo Niu, Nengpeng Zhan, Xuelian Fan, Abdul A. Khan, Yifang Kuang, Lulu Song, Guang He, Weidong Li
Software Mentions: 2
Published: over 6 years ago

10.1038/s41419-021-03870-x

HJURP promotes proliferation in prostate cancer cells through increasing CDKN1A degradation via the GSK3β/JNK signaling pathway
Cited by: 16
Author(s): Wenjie Lai, Weian Zhu, Chutian Xiao, Xiaojuan Li, Yu Wang, Yuefu Han, Jianghua Zheng, Yingqiu Li, Mingqiang Li, Xin Wen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-98948-z

Tanshinone IIA affects the malignant growth of Cholangiocarcinoma cells by inhibiting the PI3K-Akt-mTOR pathway
Cited by: 5
Author(s): Huayuan Liu, Caiyun Liu, Mengya Wang, Dongxu Sun, Pengcheng Zhu, Ping Zhang, Xueying Tan, Guangjun Shi
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-021-99344-3

Transcriptomic analysis revealed increased expression of genes involved in keratinization in the tears of COVID-19 patients
Cited by: 8
Author(s): Leonardo Mastropasqua, Lisa Toto, Luigi Chiricosta, Francesca Diomede, Agnese Gugliandolo, Serena Silvestro, Guya Diletta Marconi, Bruna Sinjari, Jacopo Vecchiet, Francesco Cipollone, Damiano D’Ardes, Antonio Auricchio, Manuela Lanzini, Sergio Caputi, Rossella D’Aloisio, Emanuela Mazzon, Oriana Trubiani
Software Mentions: 2
Published: almost 5 years ago

10.1002/advs.202001596

The Beneficial Role of Sunitinib in Tumor Immune Surveillance by Regulating Tumor PD‐L1
Cited by: 28
Author(s): Hui Li, Xinwei Kuang, Long Liang, Youqiong Ye, YongChang Zhang, Jialu Li, Fangyu Ma, Juan Tao, Guang Lei, Shuang Zhao, Juan Su, Nong Yang, Cong Peng, Xiaowei Xu, Mien‐Chie Hung, Leng Han, Hong Liu, Jing Liu, Xiang Chen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0190447

Network-based co-expression analysis for exploring the potential diagnostic biomarkers of metastatic melanoma
Cited by: 37
Author(s): Lixin Wang, Li Yang, Guanzhi Chen
Software Mentions: 2
Published: over 8 years ago

10.1186/s12935-021-02138-w

NCAPG promotes the progression of lung adenocarcinoma via the TGF-β signaling pathway
Cited by: 20
Author(s): Yun Wu, Ying Lin, Junfan Pan, Xunwei Tu, Yiquan Xu, Hongru Li, Yu‐Sheng Chen
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41392-020-00382-6

Molecular characteristics of primary pulmonary lymphoepithelioma-like carcinoma based on integrated genomic analyses
Cited by: 18
Author(s): Bojiang Chen, Yu Zhang, Shenyu Dai, Ping Zhou, Wenxin Luo, Zhoufeng Wang, Xuping Chen, Cheng Peng, Guoya Zheng, Jing Ren, Xiaodong Yang, Weimin Li
Software Mentions: 2
Published: over 5 years ago

10.1186/s13287-020-01690-y

Comparative separation methods and biological characteristics of human placental and umbilical cord mesenchymal stem cells in serum-free culture conditions
Cited by: 21
Author(s): Yingying Xiao, Feng Chen, Fenghua Li, Qing Peng, Li Yang, Li Shao, Jiang Du, Yi Gao, Yifeng Wang
Software Mentions: 2
Published: about 6 years ago

10.1002/cam4.1854

Genomewide identification of a novel six-LncRNA signature to improve prognosis prediction in resectable hepatocellular carcinoma
Cited by: 28
Author(s): Ying Wu, Pengshuo Wang, Ben-gang Wang, Xu Lu, Wanxia Fang, Xiaofang Che, Xiujuan Qu, Yunpeng Liu, Zhi Li
Software Mentions: 2
Published: almost 8 years ago

10.1111/acel.13360

Single human oocyte transcriptome analysis reveals distinct maturation stage‐dependent pathways impacted by age
Cited by: 34
Author(s): Sílvia Llonch, Montserrat Barragán, Paula Nieto, Anna Mallol, Marc Elosua-Bayés, Patricia Lorden, Sara Ruiz, Filippo Zambelli, Holger Heyn, Rita Vassena, Bernhard Payer
Software Mentions: 2
Published: over 5 years ago

10.1186/s13041-018-0376-5

RNAseq analysis of hippocampal microglia after kainic acid-induced seizures
Cited by: 35
Author(s): Dale B. Bosco, Jiaying Zheng, Zhiyan Xu, Jinrong Peng, Ukpong B. Eyo, Ke Tang, Cheng Yan, Jun Huang, Lijie Feng, Guoying Wu, Jason R. Richardson, Hui Wang, Long Wu
Software Mentions: 2
Published: about 8 years ago

10.1155/2018/8238496

Genome-Wide DNA Methylation Analysis during Osteogenic Differentiation of Human Bone Marrow Mesenchymal Stem Cells
Cited by: 14
Author(s): Yangyang Cao, Haoqing Yang, Luyuan Jin, Juan Du, Zhipeng Fan
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0246610

Adherent and suspension baby hamster kidney cells have a different cytoskeleton and surface receptor repertoire
Cited by: 2
Author(s): Veronika Dill, Florian Pfaff, Aline Zimmer, Martin Beer, Michael Eschbaumer
Software Mentions: 2
Published: about 5 years ago

10.1002/cam4.2232

CLEC3A, MMP7, and LCN2 as novel markers for predicting recurrence in resected G1 and G2 pancreatic neuroendocrine tumors
Cited by: 17
Author(s): Masami Minemura, Takamasa Oono, Nao Fujimori, Takehiro Takaoka, Ken Kawabe, Yoshihiro Miyasaka, Takao Ohtsuka, Daisuke Saito, Masafumi Nakamura, Yasuyuki Ohkawa, Yoshinao Oda, Mikita Suyama, Tetsuhide Ito, Yoshihiro Ogawa
Software Mentions: 2
Published: about 7 years ago

10.7150/thno.44782

Therapeutic potential of HERS spheroids in tooth regeneration
Cited by: 10
Author(s): Yufeng Duan, Xuebing Li, Sicheng Zhang, Shikai Wang, Tao Wang, Hong Chen, Yiqin Yang, Sixun Jia, Guoqing Chen, Weidong Tian
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.6885

Elevated limb-bud and heart development (LBH) expression indicates poor prognosis and promotes gastric cancer cell proliferation and invasion via upregulating Integrin/FAK/Akt pathway
Cited by: 18
Author(s): Ruoxi Yu, Zhi Li, Chuang Zhang, Hongli Song, Mingming Deng, Liping Sun, Ling Xu, Xiaofang Che, Xuejun Hu, Xiujuan Qu, Yunpeng Liu, Ye Zhang
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.10746

Overexpressed PLAU and its potential prognostic value in head and neck squamous cell carcinoma
Cited by: 19
Author(s): Zhexuan Li, Chang‐Han Chen, Juncheng Wang, Ming Wei, Guancheng Liu, Yuexiang Qin, Li She, Yong Liu, Donghai Huang, Yongquan Tian, Guanghao Zhu, Xin Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers12071735

Calcium Signaling Alterations Caused by Epigenetic Mechanisms in Pancreatic Cancer: From Early Markers to Prognostic Impact
Cited by: 14
Author(s): Cleandra Gregório, Sheila Coelho Soares-Lima, Bárbara Alemar, Mariana Recamonde‐Mendoza, Diego Camuzi, Paulo Thiago de Souza-Santos, Raquel Camara Rivero, Simone Márcia dos Santos Machado, Alessandro Bersch Osvaldt, Patrícia Ashton‐Prolla, Luís Felipe Ribeiro Pinto
Software Mentions: 2
Published: about 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223