bioconductor: clusterProfiler | Projects

10.3389/fgene.2020.590770

Systemic Analysis of the Prognosis-Associated Alternative Polyadenylation Events in Breast Cancer
Cited by: 5
Author(s): Yi Zhang, Yuzhi Wang, Cheng‐Wen Li, Tianhua Jiang
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-018-27897-x

TIMP2 is a Poor Prognostic Factor and Predicts Metastatic Biological Behavior in Gastric Cancer
Cited by: 25
Author(s): Wei Wang, Yifan Zhang, Mingxing Liu, Yang Wang, Tao Yang, Dongsheng Li, Feng Ding, Guang Bai, Qing Li
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/9369341

Nine Genes Mediate the Therapeutic Effects of Iodine-131 Radiotherapy in Thyroid Carcinoma Patients
Cited by: 6
Author(s): Shuwen Han, Yang Xi, Miao Da, Jingying Xu, Zhuang Jing, Gao Wei-li
Software Mentions: 3
Published: over 4 years ago

10.3389/fnins.2021.614142

Agonal Factors Distort Gene-Expression Patterns in Human Postmortem Brains
Cited by: 2
Author(s): Jiacheng Dai, Yu Chen, Rujia Dai, Yi Jiang, Jianghua Tian, Sihan Liu, Meng Xu, Miao Li, Jiaqi Zhou, Chunyu Liu, Chao Chen
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/9991255

Identification of 5 Hub Genes Related to the Early Diagnosis, Tumour Stage, and Poor Outcomes of Hepatitis B Virus-Related Hepatocellular Carcinoma by Bioinformatics Analysis
Cited by: 13
Author(s): Rui Qiang, Zitong Zhao, Lu Tang, Qian Wang, Yanhong Wang, Qian Huang
Software Mentions: 3
Published: about 3 years ago

10.1155/2020/4574792

Functional Modular Network Identifies the Key Genes of Preoperative Inhalation Anesthesia and Intravenous Anesthesia in Off-Pump Coronary Artery Bypass Grafting
Cited by: 3
Author(s): Hongfei Zhao, Weitian Wang, Liping Liu, Junlong Wang, Quanzhang Yan
Software Mentions: 3
Published: over 4 years ago

10.1155/2021/8886897

Integrated Analysis of lncRNA-Associated ceRNA Network Identifies Two lncRNA Signatures as a Prognostic Biomarker in Gastric Cancer
Cited by: 7
Author(s): Shuyan Zhang, Shanshan Li, Jiuxin Guo, Ningyi Li, Caining Zhang, Jie Liu
Software Mentions: 3
Published: about 3 years ago

10.1515/med-2020-0405

Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2020.585980

Discovery and Validation of a Metastasis-Related Prognostic and Diagnostic Biomarker for Melanoma Based on Single Cell and Gene Expression Datasets
Cited by: 16
Author(s): Qi Wan, Chengxiu Liu, Chang Liu, Weiqin Liu, Xiaoran Wang, Zhichong Wang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-30551-1

In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells
Cited by: 29
Author(s): Tae-Yong Kim, Oscar Echeagaray, Bingyan Wang, Alexandria Casillas, Kathleen M. Broughton, Bong-Hyun Kim, Mark A. Sussman
Software Mentions: 3
Published: over 6 years ago

10.1155/2020/8836493

Identification of Prognostic Biomarkers of Cutaneous Melanoma Based on Analysis of Tumor Mutation Burden
Cited by: 4
Author(s): Jiaqiong Lin, Ye Lin, Zhemin Huang, Xiaoyong Li
Software Mentions: 3
Published: about 4 years ago

10.18632/oncotarget.23409

Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Cited by: 46
Author(s): Viktor Arnhold, Karin Schmelz, Jutta Proba, Annika Winkler, Jasmin Wünschel, Joern Toedling, Hedwig E. Deubzer, Annette Künkele, Angelika Eggert, Johannes H. Schulte, Patrick Hundsdoerfer
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-66620-7

Roles of Elm1 in antifungal susceptibility and virulence in Candida glabrata
Cited by: 4
Author(s): Yuya Ito, Taiga Miyazaki, Yutaka Tanaka, Takashi Suematsu, Hironobu Nakayama, Akihiro Morita, Tatsuro Hirayama, Masato Tashiro, Takahiro Takazono, Tomomi Saijo, Shintaro Shimamura, Kazuko Yamamoto, Yoshifumi Imamura, Koichi Izumikawa, Katsunori Yanagihara, Shigeru Kohno, Hiroshi Mukae
Software Mentions: 3
Published: over 4 years ago

10.18632/oncotarget.24403

Prognostic role of elevated mir-24-3p in breast cancer and its association with the metastatic process
Cited by: 45
Author(s): Alireza Khodadadi‐Jamayran, Betul Akgol-Oksuz, Yelena Afanasyeva, Adriana Heguy, Marae Thompson, Karina Ray, Ariadna Giró-Perafita, Irma Sánchez, Xifeng Wu, Debu Tripathy, Anne Zeleniuch‐Jacquotte, Aristotelis Tsirigos, Francisco J. Esteva
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12967-019-1776-8

Circulating miR-3659 may be a potential biomarker of dyslipidemia in patients with obesity
Cited by: 12
Author(s): Miao Liu, Rui-Xing Yin, Shang Ling Pan, Shuo Yang, De Zhai Yang, Wei Lin
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/1186458

DNA Hypomethylation of DOCK1 Leading to High Expression Correlates with Neurologic Deterioration and Poor Function Outcomes after Spontaneous Intracerebral Hemorrhage
Cited by: 5
Author(s): Yufeng Gao, Xiaojie Fu, Lie Yu, Di Zhang, Zhaoming Lu, Kefei Cui, Chang Liu, Man Jiang, Jianping Wang
Software Mentions: 3
Published: about 3 years ago

10.3390/cells10010006

Direct Neuronal Reprogramming of Common Marmoset Fibroblasts by ASCL1, microRNA-9/9*, and microRNA-124 Overexpression
Cited by: 5
Author(s): Akisa Nemoto, Reona Kobayashi, Sho Yoshimatsu, Yuta Sato, Takahiro Kondo, Andrew S. Yoo, Sho Shiozawa, Hideyuki Okano
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.27506

Inducible knock-out of BCL6 in lymphoma cells results in tumor stasis
Cited by: 21
Author(s): Stefanie Schlager, Carina Salomon, Sabine Olt, Christoph Albrecht, Anja Ebert, Oliver Bergner, Johannes Wachter, Francesca Trapani, Daniel Gerlach, Tilman Voss, Anna K. Traunbauer, Julian Jude, Matthias Hinterndorfer, Martina Minnich, Norbert Schweifer, Sophia M. Blake, Vittoria Zinzalla, Barbara Drobits, Darryl B. McConnell, Norbert Kraut, Mark Pearson, Johannes Zuber, Manfred Koegl
Software Mentions: 3
Published: over 4 years ago

10.1186/s12974-017-0924-4

Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis
Cited by: 19
Author(s): Kathrin Bail, Quirin Notz, Damiano M. Rovituso, Andrea Schampel, Marie Wunsch, Tobias Koeniger, Verena Schropp, Richa Bharti, Claus‐Jürgen Scholz, Konrad Foerstner, Christoph Kleinschnitz, Stefanie Küerten
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-40016-8

Whole transcriptome targeted gene quantification provides new insights on pulmonary sarcomatoid carcinomas
Cited by: 10
Author(s): Greta Alì, Rossella Bruno, Anello Marcello Poma, Ornella Affinito, Antonella Monticelli, Paolo Piaggi, Sara Ricciardi, Marco Lucchi, Franca Melfi, Antonio Chella, Sérgio Cocozza, Gabriella Fontanini
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.663263

Identification of an m6A-Related lncRNA Signature for Predicting the Prognosis in Patients With Kidney Renal Clear Cell Carcinoma
Cited by: 37
Author(s): Junjie Yu, Weipu Mao, Si Sun, Qiang Hu, Can Wang, Zhipeng Xu, Rui-Ji Liu, Saisai Chen, Bin Xu, Ming Chen
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.00215

A Novel Long Non-coding RNA, MSTRG.51053.2 Regulates Cisplatin Resistance by Sponging the miR-432-5p in Non-small Cell Lung Cancer Cells
Cited by: 24
Author(s): Jie Zhang, Chuanqin Xu, Y Gao, Yi Wang, Zongli Ding, Yueming Zhang, Wenyi Shen, Yulong Zheng, Yufeng Wan
Software Mentions: 3
Published: over 4 years ago

10.3390/jpm11020138

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma
Cited by: 6
Author(s): Yigit Koray Babal, B. Kandemir, Işıl Aksan Kurnaz
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22147414

An Integrative Study of Aortic mRNA/miRNA Longitudinal Changes in Long-Term LVAD Support
Cited by: 1
Author(s): Dana Dlouhá, Peter Ivák, Ivan Netuka, Sarka Benesova, Z. Tučanová, Jaroslav A. Hubacek
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.566430

Hypoxia Correlates With Poor Survival and M2 Macrophage Infiltration in Colorectal Cancer
Cited by: 33
Author(s): Ling Qi, Jiani Chen, Yanmei Yang, Wangxiong Hu
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms22094919

Genome-Wide Identification and Expression Profiling of the WOX Gene Family in Citrus sinensis and Functional Analysis of a CsWUS Member
Cited by: 9
Author(s): Faiza Shafique Khan, Ren‐Fang Zeng, Zhi-Meng Gan, Jin‐Zhi Zhang, Chun-Gen Hu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.606765

KIF21B Expression in Osteosarcoma and Its Regulatory Effect on Osteosarcoma Cell Proliferation and Apoptosis Through the PI3K/AKT Pathway
Cited by: 7
Author(s): Songjia Ni, Jianjun Li, Sujun Qiu, Yingming Xie, Kaiqin Gong, Yang Duan
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.27555

Zebrafish B cell acute lymphoblastic leukemia: new findings in an old model
Cited by: 8
Author(s): Gilseung Park, Jessica Burroughs‐Garcia, Clay A. Foster, Ameera Hasan, Chiara Borga, J. Kimble Frazer
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms22094371

Connectivity Map Analysis of a Single-Cell RNA-Sequencing -Derived Transcriptional Signature of mTOR Signaling
Cited by: 8
Author(s): Naim Al Mahi, Erik Y. Zhang, Susan G. Sherman, Jane Yu, Mario Medvedovic
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22063123

Hyaluronan Synthases’ Expression and Activity Are Induced by Fluid Shear Stress in Bone Marrow-Derived Mesenchymal Stem Cells
Cited by: 4
Author(s): Sebastian Reiprich, Elif Akova, Attila Aszódi, Veronika Schönitzer
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.542063

Construction of Gene Modules and Analysis of Prognostic Biomarkers for Cervical Cancer by Weighted Gene Co-Expression Network Analysis
Cited by: 7
Author(s): Jiamei Liu, Shengye Liu, Xianghong Yang
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.550986

MicroRNAs Expression Patterns Predict Tumor Mutational Burden in Colorectal Cancer
Cited by: 5
Author(s): Jiahao Huang, Haizhou Liu, Yang Zhao, Tao Luo, Jungang Liu, Junjie Liu, Xiaoyan Pan, Weizhong Tang
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22052442

Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-65115-9

Dichotomy between the transcriptomic landscape of naturally versus accelerated aged murine hearts
Cited by: 0
Author(s): Federica De Majo, Jana-Charlotte Hegenbarth, Frank Rühle, Christian Bär, Thomas Thum, Martine de Boer, Dirk J. Duncker, Blanche Schroen, Anne-Sophie Armand, Monika Stoll, León J. De Windt
Software Mentions: 3
Published: over 4 years ago

10.1155/2020/8899337

Autophagy-Related Signature for Head and Neck Squamous Cell Carcinoma
Cited by: 9
Author(s): Li Cheng, Zeng-Hong Wu, Kexin Yuan
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020810

Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Cited by: 8
Author(s): Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020834

High-Fat Diets with Differential Fatty Acids Induce Obesity and Perturb Gut Microbiota in Honey Bee
Cited by: 9
Author(s): Xiaofei Wang, Z. Zhong, Xiangyin Chen, Ziyun Hong, Weimin Lin, Xiaohuan Mu, Xiaosong Hu, Hao Zheng
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.713017

AGTRAP Is a Prognostic Biomarker Correlated With Immune Infiltration in Hepatocellular Carcinoma
Cited by: 5
Author(s): Shanshan Liu, Wei Zhao, Xuemei Li, Zhang La, Yu Tang Gao, Qiling Peng, Changsheng Du, Ning Jiang
Software Mentions: 3
Published: about 3 years ago

10.1186/s13148-018-0603-z

TRIM4 is associated with neural tube defects based on genome-wide DNA methylation analysis
Cited by: 12
Author(s): Henan Zhang, Yi Guo, Hui Gu, Xiaowei Wei, Wei Ma, Dan Liú, Kun Yu, Wenting Luo, Lifang Ma, Yusi Liu, Jianming Xue, Jieting Huang, Wang Yan, Shanshan Jia, Naixuan Dong, Hongyan Wang, Zhengwei Yuan
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/5943014

Bioinformatic Identification of Neuroblastoma Microenvironment-Associated Biomarkers with Prognostic Value
Cited by: 4
Author(s): Yi Wang, Huan Luo, Jing Cao, Chi Ma
Software Mentions: 3
Published: about 4 years ago

10.1186/s13018-021-02329-1

Machine learning analysis of gene expression profile reveals a novel diagnostic signature for osteoporosis
Cited by: 5
Author(s): Xinlei Chen, Guangping Liu, Shuxiang Wang, Haiyang Zhang, Peng Xue
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.604784

Influence of Immune Microenvironment on Diagnosis and Prognosis of Head and Neck Squamous Cell Carcinoma
Cited by: 8
Author(s): Guo-Hong Liu, Chunjue Yuan, Jiaojiao Ma, Yunbao Pan, Haibo Xu
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms21249506

Maize microRNA166 Inactivation Confers Plant Development and Abiotic Stress Resistance
Cited by: 19
Author(s): Na Li, Tianxiao Yang, Zhanyong Guo, Qiusheng Wang, Mao Chai, Mingbo Wu, Xiaoqi Li, Weiya Li, Guangxian Li, Jihua Tang, Guiliang Tang, Zhanhui Zhang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s42003-020-0827-2

Igf2bp3 maintains maternal RNA stability and ensures early embryo development in zebrafish
Cited by: 37
Author(s): Fan Ren, Qiaohong Lin, Gaorui Gong, Xian Du, Daojun Hong, Wenying Qin, Ran Miao, Yang Xiong, Rui Xiao, Xiaohui Li, Jian‐Fang Gui, Jie Mei
Software Mentions: 3
Published: over 4 years ago

10.1002/cti2.1108

CD163+ tumor‐associated macrophage accumulation in breast cancer patients reflects both local differentiation signals and systemic skewing of monocytes
Cited by: 39
Author(s): Rodrigo Nalio Ramos, Céline Rodriguez, Margaux Hubert, Maude Ardin, Isabelle Treilleux, Carola H. Ries, Emilie Lavergne, Sylvie Chabaud, Amélie Colombe, Olivier Trédan, Henrique Gomes Guedes, Fábio Martins Laginha, Wilfrid Richer, Eliane Piaggio, José Alexandre Marzagão Barbuto, Christophe Caux, Christine Ménétrier‐Caux, Nathalie Bendriss‐Vermare
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21010260

Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation
Cited by: 15
Author(s): Na-Hyun Shin, Đỗ Thị Trang, Woo‐Jong Hong, Kiyoon Kang, Chuluuntsetseg Jadamba, Joon‐Kwan Moon, Yo-Han Yoo, Ki‐Hong Jung, Soo-Cheul Yoo
Software Mentions: 3
Published: almost 5 years ago

10.3389/fonc.2021.622085

High Iodine Induces the Proliferation of Papillary and Anaplastic Thyroid Cancer Cells via AKT/Wee1/CDK1 Axis
Cited by: 2
Author(s): Chunpeng Lv, Yanhui Gao, Jinyin Yao, Yan Li, Qun Lou, Meichen Zhang, Qing Tian, Yanmei Yang, Dianjun Sun
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2019.00957

ACAT1 and Metabolism-Related Pathways Are Essential for the Progression of Clear Cell Renal Cell Carcinoma (ccRCC), as Determined by Co-expression Network Analysis
Cited by: 32
Author(s): Liang Chen, Tianchen Peng, Yongwen Luo, Fenfang Zhou, Gang Wang, Kaiyu Qian, Yu Xiao, Xinghuan Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.639724

Loss of IL-34 Expression Indicates Poor Prognosis in Patients With Lung Adenocarcinoma
Cited by: 7
Author(s): Zhendong Wang, Zhu Jun, Tianyi Wang, Hao Zhou, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Jiahai Shi
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.659201

Prognostic Prediction of Cytogenetically Normal Acute Myeloid Leukemia Based on a Gene Expression Model
Cited by: 4
Author(s): Yang Liu, Houyu Zhang, Xue Yang, Ting Lu, Shihui Ma, Hui Cheng, Kuangyu Yen, Tao Cheng
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: about 5 years ago

10.15252/embj.2018100847

Strong anion exchange‐mediated phosphoproteomics reveals extensive human non‐canonical phosphorylation
Cited by: 115
Author(s): Gemma Hardman, Simon Perkins, Philip Brownridge, Christopher J. Clarke, Dominic P. Byrne, Amy E. Campbell, Anton Kalyuzhnyy, Ashleigh C Myall, Patrick A. Eyers, Andrew R. Jones
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20092086

Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling
Cited by: 16
Author(s): Yashwanth Subbannayya, Sneha M. Pinto, Korbinian Bösl, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-94784-3

A prospective study revealing the role of an immune-related eRNA, WAKMAR2, in breast cancer
Cited by: 7
Author(s): Linbang Wang, Jingkun Liu, Jiaojiao Tai, Nina Zhou, Tianji Huang, Yuzhou Xue, Zhengxue Quan
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-93893-3

Microarray-based selection of a serum biomarker panel that can discriminate between latent and active pulmonary TB
Cited by: 6
Author(s): Zhihui Li, Jianjun Hu, Pengchong Liu, Dan Cui, Hongqin Di, Shucai Wu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.544476

Down-Regulation of MiR-181c-5p Promotes Epithelial-to-Mesenchymal Transition in Laryngeal Squamous Cell Carcinoma via Targeting SERPINE1
Cited by: 11
Author(s): Xin Li, Ping Wu, Yuhua Fan, Yalan Liu, Xing Fang, Wei Wang, Suping Zhao
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2018.00368

Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer
Cited by: 11
Author(s): Leilei Xia, Han Wang, Shengyun Cai, Xiaoling Su, Jizi Shen, Meng Qi, Yu Chen, Li Li, Jiuqiong Yan, Caihong Zhang, Man Xu
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-018-22288-8

Low incubation temperature during early development negatively affects survival and related innate immune processes in zebrafish larvae exposed to lipopolysaccharide
Cited by: 25
Author(s): Qirui Zhang, Martina Kopp, Igor Babiak, Jorge Manuel de Oliveira Fernandes
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-77623-9

UBC9 coordinates inflammation affecting development of bladder cancer
Cited by: 15
Author(s): Xiaoliang Huang, Yuting Tao, Jiamin Gao, Xiaoting Zhou, Shaomei Tang, Caiwang Deng, Zhiyong Lai, Xinggu Lin, Qiuyan Wang, Tianyu Li
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-92091-5

Bioinformatic profiling identifies prognosis-related genes in the immune microenvironment of endometrial carcinoma
Cited by: 5
Author(s): Pu Cheng, Jiong Ma, Xia Zheng, Chunxia Zhou, Xuejun Chen
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-54603-2

A novel circRNA-miRNA-mRNA network identifies circ-YOD1 as a biomarker for coronary artery disease
Cited by: 49
Author(s): Miao Liu, Rui-Xing Yin, Qinghui Zhang, Pei-Juan Liao, Yong Wang, Rong-Jun Nie, Hui Li
Software Mentions: 3
Published: almost 5 years ago

10.15252/emmm.201910919

Active poly‐GA vaccination prevents microglia activation and motor deficits in a C9orf72 mouse model
Cited by: 35
Author(s): Qihui Zhou, Nikola Mareljic, Meike Michaelsen, Samira Parhizkar, Steffanie Heindl, Brigitte Nuscher, Daniel Farny, Mareike Czuppa, Carina Schludi, Alexander Graf, Stefan Krebs, Helmut Blum, Regina Feederle, Stefan Roth, Christian Haass, Thomas Arzberger, Arthur Liesz, Dieter Edbauer
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13018-021-02201-2

Bioinformatics analysis of miRNA and mRNA expression profiles to reveal the key miRNAs and genes in osteoarthritis
Cited by: 13
Author(s): Peiyan Huang, Junguo Wu, Jun Gu, Tie-qi Zhang, Lingfeng Li, Siqun Wang, Ming-Hai Wang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-91373-2

Transcriptome profiling analysis of muscle tissue reveals potential candidate genes affecting water holding capacity in Chinese Simmental beef cattle
Cited by: 4
Author(s): Lili Du, Tianpeng Chang, Bingxing An, Mang Liang, Xinghai Duan, Wentao Cai, Bo Zhu, Xue Gao, Yan Chen, Lingyang Xu, Lupei Zhang, Junya Li, Huijiang Gao
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22158059

SARS-CoV-2 Infected Pediatric Cerebral Cortical Neurons: Transcriptomic Analysis and Potential Role of Toll-like Receptors in Pathogenesis
Cited by: 9
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Valeria Calcaterra, Mara Biasin, Gioia Cappelletti, Stephana Carelli, Gian Vincenzo Zuccotti, Maria Antonietta Avanzini, Placido Bramantı, Glória Pelizzo, Emanuela Mazzon
Software Mentions: 3
Published: over 3 years ago

10.1155/2019/1205942

PIM1, CYP1B1, and HSPA2 Targeted by Quercetin Play Important Roles in Osteoarthritis Treatment by Achyranthes bidentata
Cited by: 7
Author(s): Dujun Ma, Yu Tian, Liping Peng, Lixin Wang, Zhouwei Liao, Wenming Xu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89207-2

Cold-induction of afadin in brown fat supports its thermogenic capacity
Cited by: 2
Author(s): Morten Lundh, Ali Altıntaş, Marco Tozzi, Odile Fabre, Tao Ma, Farnaz Shamsi, Zachary Gerhart-Hines, Romain Barrès, Yu–Hua Tseng, Brice Emanuelli
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22158012

Detecting and Profiling Endogenous RNA G-Quadruplexes in the Human Transcriptome
Cited by: 3
Author(s): Rongxin Zhang, Yajun Li, Xingxing Zhang, Ke Xiao, Yue Hou, Hongde Liu, Xiao Sun
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-56590-w

A systems biology approach reveals neuronal and muscle developmental defects after chronic exposure to ionising radiation in zebrafish
Cited by: 8
Author(s): Sophia Murat El Houdigui, Christelle Adam-Guillermin, Giovanna Loro, Caroline Arcanjo, Sandrine Frelon, Magali Floriani, Nicolas Dubourg, Emilie Baudelet, Stéphane Audebert, Luc Camoin, Olivier Armant
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms221810154

Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing
Cited by: 11
Author(s): Tengfei Shen, Mengxuan Xu, Haoran Qi, Ying Feng, Zhangqi Yang, Meng Xu
Software Mentions: 2
Published: about 3 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: over 3 years ago

10.1002/cti2.1131

Comparison of two human organoid models of lung and intestinal inflammation reveals Toll‐like receptor signalling activation and monocyte recruitment
Cited by: 24
Author(s): Shyam Sushama Jose, Marco De Zuani, Federico Tidu, Marcela Hortová-Kohoutková, Lucia Pazzagli, Giancarlo Forte, Roberta Spaccapelo, Teresa Zelante, Jan Frič
Software Mentions: 2
Published: almost 5 years ago

10.1038/s42003-021-02557-5

Tumor microbiome contributes to an aggressive phenotype in the basal-like subtype of pancreatic cancer
Cited by: 44
Author(s): Wei Guo, Yuchao Zhang, Shiwei Guo, Zi Mei, Huiping Liao, Hang Dong, Kai Wu, Haocheng Ye, Yuhang Zhang, Yong Zhu, Jing-Yu Lang, Landian Hu, Gang Jin, Xiangyin Kong
Software Mentions: 2
Published: about 3 years ago

10.1038/s42003-021-01967-9

Identification and characterization of piperine synthase from black pepper, Piper nigrum L.
Cited by: 16
Author(s): Arianne Schnabel, Benedikt Athmer, Kerstin Manke, Frank Schumacher, Fernando Cotinguiba, Thomas Vogt
Software Mentions: 2
Published: over 3 years ago

10.1038/s42003-020-01549-1

Nerve growth factor interacts with CHRM4 and promotes neuroendocrine differentiation of prostate cancer and castration resistance
Cited by: 24
Author(s): Wei Yu Chen, Yu Wen, Shian-Ren Lin, Hsiu Lien Yeh, Kuo Jiang, Yow Sien Lin, Qingfu Zhang, Phui Ly Liew, Michael Hsiao, Jiaoti Huang, Yen Nien Liu
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/8847986

eRNAs and Superenhancer lncRNAs Are Functional in Human Prostate Cancer
Cited by: 11
Author(s): Xiaona Zhang, Panpan Pang, Min Jiang, Qunfa Cao, Huili Li, Yi Xu, Yao Li, Xue Chen, Jianyong Han
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/8852388

Identification of Key Genes of Prognostic Value in Clear Cell Renal Cell Carcinoma Microenvironment and a Risk Score Prognostic Model
Cited by: 1
Author(s): Enfa Zhao, Xiaofang Bai
Software Mentions: 2
Published: about 4 years ago

10.1155/2020/8880004

Identification of Featured Metabolism-Related Genes in Patients with Acute Myocardial Infarction
Cited by: 5
Author(s): Hang Xie, Enfa Zha, Yushun Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2020/8817652

Prognostic Value of DNA Methylation-Driven Genes in Clear Cell Renal Cell Carcinoma: A Study Based on Methylation and Transcriptome Analyses
Cited by: 7
Author(s): Mao‐Lin Hu, Jian‐Wei Xie, Huiming Hou, Ming Liu, Qianqian Wang
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/8866730

Construction of an Immune-Associated Gene-Based Signature in Muscle-Invasive Bladder Cancer
Cited by: 4
Author(s): Chengquan Shen, Ting Xu, Yandong Sun, Liping Wang, Zhijuan Liang, Haitao Niu, Wei Jiao, Yonghua Wang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2019/4108474

Genome-Wide Plasma Cell-Free DNA Methylation Profiling Identifies Potential Biomarkers for Lung Cancer
Cited by: 32
Author(s): Wei Xu, Jun Lü, Qiang Zhao, Jun Wu, Jingyong Sun, Baohui Han, Xiaodong Zhao, Yani Kang
Software Mentions: 2
Published: almost 6 years ago

10.15252/embr.202050893

PIDDosome‐induced p53‐dependent ploidy restriction facilitates hepatocarcinogenesis
Cited by: 28
Author(s): Valentina C. Sladky, Katja Knapp, Tamás Szabó, Vincent Zoran Braun, Laura Bongiovanni, Hilda van den Bos, Diana C. J. Spierings, Bart Westendorp, Ana Curinha, Tatjana Stojaković, Hubert Scharnagl, Gerald Timelthaler, Kaoru Tsuchia, Matthias Pinter, Georg Semmler, Floris Foijer, Alain de Bruin, Thomas Reiberger, Nataliya Rohr-Udilova, Andreas Villunger
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.6508

Genetic adaptation of Tibetan poplar ( Populus szechuanica var. tibetica ) to high altitudes on the Qinghai–Tibetan Plateau
Cited by: 4
Author(s): Chenfei Zheng, Tan Li-zhi, Mengmeng Sang, Meixia Ye, Rongling Wu
Software Mentions: 2
Published: about 4 years ago

10.1002/ece3.6574

Physiological adaptations to sugar‐mimic alkaloids: Insights from Bombyx mori for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: about 4 years ago

10.1080/22221751.2021.1915184

Transcriptional signatures of human peripheral blood mononuclear cells can identify the risk of tuberculosis progression from latent infection among individuals with silicosis
Cited by: 4
Author(s): Qingwei Ruan, Qin Yang, Yixin Gao, Jing Wu, Siran Lin, Jingyu Zhou, Lingyun Shao, Sen Wang, Qianqian Liu, Yan Gao, Ning Jiang, Wenhong Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s40001-019-0381-x

Identification of key genes involved in myocardial infarction
Cited by: 21
Author(s): Linlin Qiu, Xueqing Liu
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/8819538

Differential Metabolomics and Network Pharmacology Analysis of Silkworm Biotransformation between Mulberry Leaves and Silkworm Droppings
Cited by: 1
Author(s): Mingqian Li, Lin Chen, Yuntao Dai, Jiacheng Li, Fēi Li, LI Qun, Zhihong Yu, Kequn Chai, Yujie Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1062325

Pharmacological Network Reveals the Active Mechanism of Qi-Replenishing, Spleen-Strengthening, Phlegm-Dispelling, and Blood-Nourishing Fufang on Coronary Heart Disease
Cited by: 2
Author(s): Fan Zhang, Yue Liu, Sicheng Zheng, Boyi Dang, Jianan Wang, Zhe Zhang
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/6642600

Network Pharmacology-Based Approach to Comparatively Predict the Active Ingredients and Molecular Targets of Compound Xueshuantong Capsule and Hexuemingmu Tablet in the Treatment of Proliferative Diabetic Retinopathy
Cited by: 5
Author(s): Hongyan Yao, Danli Xin, Zongyi Zhan, Zijing Li
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/7151634

Deciphering the Molecular Targets and Mechanisms of HGWD in the Treatment of Rheumatoid Arthritis via Network Pharmacology and Molecular Docking
Cited by: 21
Author(s): Wei Liu, Yihua Fan, Chunying Tian, Yue Jin, Shaopeng Du, Ping Zeng, Aihua Wang
Software Mentions: 2
Published: about 4 years ago

10.1155/2021/5570968

Integrated Molecular Docking with Network Pharmacology to Reveal the Molecular Mechanism of Simiao Powder in the Treatment of Acute Gouty Arthritis
Cited by: 9
Author(s): Yihua Fan, Wei Liu, Yue Jin, Xu Hou, Xuewu Zhang, Hudan Pan, Hang Lü, Xiaojing Guo
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/8861394

The Pharmacological Activity of the Wenjing Decoction in Recurrent Spontaneous Abortion
Cited by: 6
Author(s): Lixue Cao, Hui Chen, Yanxia Huang, Liudan Chen, Mengru Kang, Jing Liang
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6664489

Study on the Molecular Mechanism of the Herbal Couple Sparganii Rhizoma-Curcumae Rhizoma in the Treatment of Lung Cancer Based on Network Pharmacology
Cited by: 4
Author(s): Shuguang Dai, Gaochenxi Zhang, Fangmin Zhao, Qijin Shu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/9952060

The Research on the Treatment of Metastatic Skin Cutaneous Melanoma by Huanglian Jiedu Decoction Based on the Analysis of Immune Infiltration Analysis
Cited by: 0
Author(s): Ding Li, Shifang Li, Xiaoyuan Li, Xiaowei Sun, Tian-Yue Sun, Guo-Jie Hu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/8548380

Idebenone-Activating Autophagic Degradation of α-Synuclein via Inhibition of AKT-mTOR Pathway in a SH-SY5Y-A53T Model of Parkinson’s Disease: A Network Pharmacological Approach
Cited by: 7
Author(s): Pei Kun He, Yu Gao, Feng‐Juan Lyu, Jia Ning Chen, Yu Hu Zhang, Kun Nie, Qing Xi Zhang, Rui Huang, Qingling Duan, Man Guo, Zhi Hua Liu, He Huang, Gui Xian, Li Juan Wang
Software Mentions: 2
Published: about 3 years ago

10.1002/2211-5463.12386

Tropomyosin isoforms have specific effects on the transcriptome of undifferentiated and differentiated B35 neuroblastoma cells
Cited by: 4
Author(s): Holly Stefen, Alexandra K. Suchowerska, Bei Jun Chen, Merryn Brettle, Jennifer Kuschelewski, Peter W. Gunning, Michael Janitz, Thomas Fath
Software Mentions: 2
Published: almost 7 years ago

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Papers Mentioning clusterProfiler 2,223