10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.103698

A two-gene-based prognostic signature for pancreatic cancer
Cited by: 8
Author(s): Shengqian Zhou, Yuanliang Yan, Xi Chen, Shuangshuang Zeng, Jie Wei, Xiang Wang, Zhicheng Gong, Zhijie Xu
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12885-020-07628-0

Analyses of metastasis-associated genes in IDH wild-type glioma
Cited by: 4
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 3
Published: over 5 years ago

10.1111/acel.13357

Age‐related telomere attrition causes aberrant gene expression in sub‐telomeric regions
Cited by: 8
Author(s): Xiao Dong, Shixiang Sun, Lei Zhang, Seung-Soo Kim, Zhidong Tu, Cristina Montagna, Alexander Y. Maslov, Yousin Suh, Tao Wang, Judith Campisi, Jan Vijg
Software Mentions: 3
Published: about 5 years ago

10.1186/s12920-020-00750-9

Weighted correlation network bioinformatics uncovers a key molecular biosignature driving the left-sided heart failure
Cited by: 8
Author(s): Jiamin Zhou, Wei Zhang, Chunying Wei, Zhiliang Zhang, Dasong Yi, Xiaoping Peng, Jianheng Peng, Rong Yin, Zeqi Zheng, Hongmei Qi, Yunfeng Wei, Tong-Chun Wen
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.27555

Zebrafish B cell acute lymphoblastic leukemia: new findings in an old model
Cited by: 8
Author(s): Gilseung Park, Jessica Burroughs‐Garcia, Clay A. Foster, Ameera Hasan, Chiara Borga, J. Kimble Frazer
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.27506

Inducible knock-out of BCL6 in lymphoma cells results in tumor stasis
Cited by: 21
Author(s): Stefanie Schlager, Carina Salomon, Sabine Olt, Christoph Albrecht, Anja Ebert, Oliver Bergner, Johannes Wachter, Francesca Trapani, Daniel Gerlach, Tilman Voss, Anna K. Traunbauer, Julian Jude, Matthias Hinterndorfer, Martina Minnich, Norbert Schweifer, Sophia M. Blake, Vittoria Zinzalla, Barbara Drobits, Darryl B. McConnell, Norbert Kraut, Mark Pearson, Johannes Zuber, Manfred Koegl
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07576-4

Long non-coding RNA pairs to assist in diagnosing sepsis
Cited by: 18
Author(s): Xubin Zheng, Kwong‐Sak Leung, Man‐Hon Wong, Lixin Cheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12974-017-0924-4

Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis
Cited by: 19
Author(s): Kathrin Bail, Quirin Notz, Damiano M. Rovituso, Andrea Schampel, Marie Wunsch, Tobias Koeniger, Verena Schropp, Richa Bharti, Claus‐Jürgen Scholz, Konrad Foerstner, Christoph Kleinschnitz, Stefanie Küerten
Software Mentions: 3
Published: about 9 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: over 8 years ago

10.1016/j.bbamcr.2020.118691

Nuclear actin regulates cell proliferation and migration via inhibition of SRF and TEAD
Cited by: 12
Author(s): Madeleine C. McNeill, Jason Wray, Graciela B. Sala-Newby, Charles C.T. Hindmarch, Sarah A. Smith, Reza Ebrahimighaei, Andrew C. Newby, Mark Bond
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.24403

Prognostic role of elevated mir-24-3p in breast cancer and its association with the metastatic process
Cited by: 45
Author(s): Alireza Khodadadi‐Jamayran, Betul Akgol-Oksuz, Yelena Afanasyeva, Adriana Heguy, Marae Thompson, Karina Ray, Ariadna Giró-Perafita, Irma Sánchez, Xifeng Wu, Debu Tripathy, Anne Zeleniuch‐Jacquotte, Aristotelis Tsirigos, Francisco J. Esteva
Software Mentions: 3
Published: over 8 years ago

10.1186/s12967-020-02690-5

An analytical method for the identification of cell type-specific disease gene modules
Cited by: 5
Author(s): Jinting Guan, Yiping Lin, Yang Wang, Junchao Gao, Guoli Ji
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-020-07159-8

The prognostic values of m6A RNA methylation regulators in uveal melanoma
Cited by: 22
Author(s): Jing Tang, Qi Wan, Jianqun Lu
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.103437

Subtype-specific risk models for accurately predicting the prognosis of breast cancer using differentially expressed autophagy-related genes
Cited by: 5
Author(s): Baoai Han, He Zhang, Yuying Zhu, Xingxing Han, Zhiyong Wang, Zicong Gao, Yue Yuan, Ruinan Tian, Fei Zhang, Ruifang Niu
Software Mentions: 3
Published: about 6 years ago

10.18632/aging.102989

Overexpression of miR-10a-5p facilitates the progression of osteoarthritis
Cited by: 9
Author(s): Huizi Li, Xiaolong Xu, Nan Lin, Dawei Wang, Yiming Lin, Zhongzhen Su, Huading Lu
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-020-07216-2

Comprehensive analysis of prognostic tumor microenvironment-related genes in osteosarcoma patients
Cited by: 19
Author(s): Chuan Hu, Chuan Liu, Shaoqi Tian, Yuanhe Wang, Rui Shen, Huili Rao, Jianyi Li, Yu Xu, Bo Chen, Ye Lin
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.102178

Prognostic value of genome-wide DNA methylation patterns in noncoding miRNAs and lncRNAs in uveal melanomas
Cited by: 1
Author(s): Zheng Zhang, Dan Xu, Ke–Qing Shi, Minfeng Chen, Fan Liu
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.103974

Comprehensive analysis of cancer hallmarks in cutaneous melanoma and identification of a novel unfolded protein response as a prognostic signature
Cited by: 7
Author(s): Qi Wan, Lin Jin, Zhichong Wang
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.101496

Signatures of photo-aging and intrinsic aging in skin were revealed by transcriptome network analysis
Cited by: 25
Author(s): Byuri Angela Cho, Seong-Keun Yoo, Jong-Soo Seo
Software Mentions: 3
Published: about 8 years ago

10.1155/2020/5943014

Bioinformatic Identification of Neuroblastoma Microenvironment-Associated Biomarkers with Prognostic Value
Cited by: 4
Author(s): Yi Wang, Huan Luo, Jing Cao, Chi Ma
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.102169

Analysis of transcription factor- and ncRNA-mediated potential pathogenic gene modules in Alzheimer’s disease
Cited by: 13
Author(s): Cuihua Zou, Jie Wang, Xiaohua Huang, Chongdong Jian, Donghua Zou, Xuebin Li
Software Mentions: 3
Published: almost 7 years ago

10.1080/21655979.2021.1911557

Identification and validation of the prognostic value of cyclic GMP-AMP synthase-stimulator of interferon (cGAS-STING) related genes in gastric cancer
Cited by: 10
Author(s): Kui-Sheng Yang, Changqing Xu, Jian Lv
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.23409

Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Cited by: 46
Author(s): Viktor Arnhold, Karin Schmelz, Jutta Proba, Annika Winkler, Jasmin Wünschel, Joern Toedling, Hedwig E. Deubzer, Annette Künkele, Angelika Eggert, Johannes H. Schulte, Patrick Hundsdoerfer
Software Mentions: 3
Published: over 8 years ago

10.1186/s12967-019-1776-8

Circulating miR-3659 may be a potential biomarker of dyslipidemia in patients with obesity
Cited by: 12
Author(s): Miao Liu, Rui-Xing Yin, Shang Ling Pan, Shuo Yang, De Zhai Yang, Wei Lin
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-020-07099-4

Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed
Cited by: 3
Author(s): Xi Liu, Frédéric Herault, Christian Diot, Erwan Corre
Software Mentions: 3
Published: almost 6 years ago

10.1002/advs.202100363

Calcium–Collagen Coupling is Vital for Biomineralization Schedule
Cited by: 7
Author(s): Jinglun Zhang, Yaoting Ji, Shuting Jiang, Miusi Shi, Wenjin Cai, Richard J. Miron, Yufeng Zhang
Software Mentions: 3
Published: about 5 years ago

10.1155/2021/5527935

Wogonin Strengthens the Therapeutic Effects of Mesenchymal Stem Cells in DSS-Induced Colitis via Promoting IL-10 Production
Cited by: 11
Author(s): Qiongli Wu, Shu‐Juan Xie, Yinhong Zhu, Jingrou Chen, Jiatong Tian, Shiqiu Xiong, Changyou Wu, Yujin Ye, Yanwen Peng
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/9235101

Identification of Key Differentially Expressed Transcription Factors in Glioblastoma
Cited by: 8
Author(s): Gang Qin, Beiquan Hu, Xianfeng Li, Rongjie Li, Youshi Meng, Yimei Wang, Donghua Zou, Feng Wang
Software Mentions: 3
Published: about 6 years ago

10.1186/s12864-021-07683-2

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms
Cited by: 11
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Belén Picó, Panagiotis Boumpas, Eleni Tsaliki, Harry S. Paris, Athanasios Tsaftaris, Apostolos Kalivas, Ιfigeneia Mellidou, Ioannis Ganopoulos
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-020-07393-0

HLA-DPA1 gene is a potential predictor with prognostic values in multiple myeloma
Cited by: 11
Author(s): Jie Yang, Fei Wang, Baoan Chen
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/8841622

Cancer Stem Cell Characteristics by Network Analysis of Transcriptome Data Stemness Indices in Breast Carcinoma
Cited by: 2
Author(s): Zeng-Hong Wu, Youjing Zhang, Changli Jia
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12967-019-2126-6

A novel epigenetic signature for overall survival prediction in patients with breast cancer
Cited by: 29
Author(s): Xuanwen Bao, Nataša Anastasov, Yanfang Wang, Michael Rosemann
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.102652

Integrated transcriptome expression profiling reveals a novel lncRNA associated with L-DOPA-induced dyskinesia in a rat model of Parkinson’s disease
Cited by: 8
Author(s): Chunlei Han, Yunpeng Liu, Yun‐Peng Sui, Ning Chen, Tingting Du, Ying Jiang, Chenjia Guo, Kailiang Wang, Qiao Wang, Shiying Fan, Michio Shimabukuro, Fangang Meng, Yuan Fang, Jianguo Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-020-07489-7

Development and validation of a fourteen- innate immunity-related gene pairs signature for predicting prognosis head and neck squamous cell carcinoma
Cited by: 18
Author(s): Fujun Zhang, Yu Liu, Yixin Yang, Kai Yang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12920-021-00886-2

Identification of S1PR3 gene signature involved in survival of sepsis patients
Cited by: 3
Author(s): Feng Ai, Wei Ma, Reem Faraj, Gabriel T. Kelly, Stephen M. Black, Michael B. Fallon, Ting Wang
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102804

The IL1β-HER2-CLDN18/CLDN4 axis mediates lung barrier damage in ARDS
Cited by: 9
Author(s): Xiaochun Ma, Xin Yu, Qi Zhou
Software Mentions: 3
Published: over 6 years ago

10.3390/nu13051492

Identification and Validation of Nutrient State-Dependent Serum Protein Mediators of Human CD4+ T Cell Responsiveness
Cited by: 13
Author(s): Han Kim, Komudi Singh, Matthew J Rodman, Shakiba Hassanzadeh, Yvonne Baumer, Rebecca D. Huffstutler, Jinguo Chen, Julián Candia, Foo Cheung, Katherine E. Stagliano, Mehdi Pirooznia, Tiffany M. Powell‐Wiley, Michael N. Sack
Software Mentions: 3
Published: over 5 years ago

10.1186/s40659-018-0192-5

Dysregulation of NCAPG, KNL1, miR-148a-3p, miR-193b-3p, and miR-1179 may contribute to the progression of gastric cancer
Cited by: 52
Author(s): Bin Song, Juan Du, Defeng Song, Jian Ren, Yan Feng
Software Mentions: 3
Published: almost 8 years ago

10.3390/nu10121921

Clostridium butyricum MIYAIRI 588 Increases the Lifespan and Multiple-Stress Resistance of Caenorhabditis elegans
Cited by: 25
Author(s): Maiko Kato, Yoko Hamazaki, Simo Sun, Yoshikazu Nishikawa, Eriko Kage-Nakadai
Software Mentions: 3
Published: over 7 years ago

10.1186/s13293-020-00288-6

Sex-specific and shared expression profiles of vulnerability and resilience to trauma in brain and blood
Cited by: 11
Author(s): Grace S Kim, Monica Uddin
Software Mentions: 3
Published: over 6 years ago

10.1186/s12915-019-0687-8

Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
Cited by: 45
Author(s): Lingzhao Fang, Shuli Liu, Mei Liu, Xiaolong Kang, Shudai Lin, Bingjie Li, Erin E. Connor, VI Ransom L. Baldwin, Albert Tenesa, Li Ma, George E. Liu, Congjun Li
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12915-021-01004-5

Transcription initiation of distant core promoters in a large-sized genome of an insect
Cited by: 2
Author(s): Qing Liu, Feng Jiang, Jie Zhang, Li Xiao, Le Kang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20092086

Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling
Cited by: 16
Author(s): Yashwanth Subbannayya, Sneha M. Pinto, Korbinian Bösl, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-018-5217-5

Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses
Cited by: 4
Author(s): Nicolaas Van Renne, Ruifang Wei, Nathalie Pochet, Hans Nauwynck
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: about 7 years ago

10.1186/s12920-021-00971-6

Bioinformatic identification of hub genes and related transcription factors in low shear stress treated endothelial cells
Cited by: 2
Author(s): Yang Yang, Xiangshan Xu
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12885-019-6327-4

Molecular subtyping improves prognostication of Stage 2 colorectal cancer
Cited by: 13
Author(s): Rachel Purcell, Sebastian Schmeier, Yee Chen Lau, John F. Pearson, F. A. Frizelle
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07536-y

Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene
Cited by: 1
Author(s): Ran Di, Qiu Yue Liu, Shu Hui Song, Dong Tian, Jian He, Ying Ge, Xiang Yu Wang, Wen Hu, Joram M. Mwacharo, Zhang Yuan Pan, Jian Dong Wang, Qing Ma, G. L. Cao, Hui Jin, Liang Xiao, M. X. Chu
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21010260

Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation
Cited by: 15
Author(s): Na-Hyun Shin, Đỗ Thị Trang, Woo‐Jong Hong, Kiyoon Kang, Chuluuntsetseg Jadamba, Joon‐Kwan Moon, Yo-Han Yoo, Ki‐Hong Jung, Soo-Cheul Yoo
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-019-3041-9

Analyzing the regulation of miRNAs on protein-protein interaction network in Hodgkin lymphoma
Cited by: 2
Author(s): Huimin Lei, Wenxu Liu, Jiarui Si, Ju Wang, Tao Zhang
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12885-021-08687-7

A novel survival model based on a Ferroptosis-related gene signature for predicting overall survival in bladder cancer
Cited by: 22
Author(s): Yingchun Liang, Fangdie Ye, Chenyang Xu, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-021-08331-4

Hsa_circ_0000301 facilitates the progression of cervical cancer by targeting miR-1228-3p/IRF4 Axis
Cited by: 9
Author(s): Zhanfeng Deng, Fangfang Dai, Quan Zhou, Yanxiang Cheng
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-020-03564-9

Clustering analysis of tumor metabolic networks
Cited by: 10
Author(s): Ichcha Manipur, Ilaria Granata, Lucia Maddalena, Mario Rosario Guarracino
Software Mentions: 3
Published: about 6 years ago

10.1186/s40478-018-0584-3

Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration
Cited by: 64
Author(s): Tuan Leng Tay, Sagar, Jana Dautzenberg, Dominic Grün, Marco Prinz
Software Mentions: 3
Published: almost 8 years ago

10.1515/med-2020-0405

Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-019-5983-8

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue
Cited by: 208
Author(s): Ruisheng Zhou, Enxin Zhang, Sun Qi-zhong, Zeng Jie Ye, Jianwei Liu, Dajun Zhou, Ying Tang
Software Mentions: 3
Published: about 7 years ago

10.3390/jpm11020138

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma
Cited by: 6
Author(s): Yigit Koray Babal, B. Kandemir, Işıl Aksan Kurnaz
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07894-7

Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae
Cited by: 4
Author(s): Shi‐Mei Huo, Zhichao Yan, Na Zhang, Lei Chen, Jing‐Tao Sun, Ary A. Hoffmann, Xiao‐Yue Hong
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-016-3356-0

The influence of pro-longevity gene Gclc overexpression on the age-dependent changes in Drosophila transcriptome and biological functions
Cited by: 17
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Ekaterina Proshkina, А. С. Белый, Alexander Fedintsev, Svetlana Zhikrivetskaya, Zulfiya G. Guvatova, А. Ф. Садритдинова, А. В. Снежкина, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 3
Published: over 9 years ago

10.1186/s12967-018-1593-5

A circRNA–miRNA–mRNA network identification for exploring underlying pathogenesis and therapy strategy of hepatocellular carcinoma
Cited by: 199
Author(s): Dandan Xiong, Yi‐Wu Dang, Peng Lin, Dong‐Yue Wen, Rong‐Quan He, Dan Luo, Zhaoyong Feng, Gang Chen
Software Mentions: 3
Published: almost 8 years ago

10.18632/aging.202714

High expression of CD52 in adipocytes: a potential therapeutic target for obesity with type 2 diabetes
Cited by: 3
Author(s): Rui Mao, Fan Yang, Yu Zhang, Hongtao Liu, Pengsen Guo, Yanjun Liu, Tongtong Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12906-021-03215-3

A network pharmacology perspective for deciphering potential mechanisms of action of Solanum nigrum L. in bladder cancer
Cited by: 17
Author(s): Yun Dong, Lin Hao, Kun Fang, Xing Han, Hui Yu, Jianjun Zhang, Longjun Cai, Tao Fan, Wen-da Zhang, Kun Pang, Weiming Ma, Xitao Wang, Conghui Han
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21249506

Maize microRNA166 Inactivation Confers Plant Development and Abiotic Stress Resistance
Cited by: 19
Author(s): Na Li, Tianxiao Yang, Zhanyong Guo, Qiusheng Wang, Mao Chai, Mingbo Wu, Xiaoqi Li, Weiya Li, Guangxian Li, Jihua Tang, Guiliang Tang, Zhanhui Zhang
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/3158108

Danhong Injection Alleviates Cardiac Fibrosis via Preventing the Hypermethylation of Rasal1 and Rassf1 in TAC Mice
Cited by: 7
Author(s): Sinai Li, Ping Li, Weihong Liu, Juju Shang, Sheng-Lei Qiu, Xiang Li, Wei Liu, Haoyue Shi, Mingxue Zhou, Hongxu Liu
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22020834

High-Fat Diets with Differential Fatty Acids Induce Obesity and Perturb Gut Microbiota in Honey Bee
Cited by: 9
Author(s): Xiaofei Wang, Z. Zhong, Xiangyin Chen, Ziyun Hong, Weimin Lin, Xiaohuan Mu, Xiaosong Hu, Hao Zheng
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22020810

Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Cited by: 8
Author(s): Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: over 5 years ago

10.1186/s13018-021-02329-1

Machine learning analysis of gene expression profile reveals a novel diagnostic signature for osteoporosis
Cited by: 5
Author(s): Xinlei Chen, Guangping Liu, Shuxiang Wang, Haiyang Zhang, Peng Xue
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-5842-7

Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana
Cited by: 23
Author(s): Mengshi Wu, Xue Ding, Xing Fu, Rosa Lozano‐Durán
Software Mentions: 3
Published: about 7 years ago

10.3390/ijms22052442

Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/6685282

Zi Shen Decoction Inhibits Growth and Metastasis of Lung Cancer via Regulating the AKT/GSK-3β/β-Catenin Pathway
Cited by: 6
Author(s): Yanxia Ma, Yu Liu, Linxin Teng, En Luo, Dekang Liu, Fuqiong Zhou, Kaiyuan Wang, Weiping Chen, Lei Bi
Software Mentions: 3
Published: over 5 years ago

10.1186/s12870-020-02649-0

Application of compound material alleviates saline and alkaline stress in cotton leaves through regulation of the transcriptome
Cited by: 11
Author(s): Mengjie An, Xiaoli Wang, Doudou Chang, Shuai Wang, Dashuang Hong, Houbao Fan, Kaiyong Wang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-021-07741-9

Transcriptome profiling of the diaphragm in a controlled mechanical ventilation model reveals key genes involved in ventilator-induced diaphragmatic dysfunction
Cited by: 6
Author(s): Ruining Liu, Gang Li, Hongwei Ma, Xianlong Zhou, Pengcheng Wang, Yan Zhao
Software Mentions: 2
Published: about 5 years ago

10.1186/s12916-021-02044-y

Oral vitamin D supplementation induces transcriptomic changes in rectal mucosa that are linked to anti-tumour effects
Cited by: 6
Author(s): P G Vaughan-Shaw, Graeme R. Grimes, James P. Blackmur, Maria Timofeeva, Marion Walker, Li Yin Ooi, Victoria Svinti, Kevin Donnelly, Farhat V N Din, Susan M. Farrington, Malcolm Dunlop
Software Mentions: 2
Published: about 5 years ago

10.1186/s12881-019-0771-5

The CIMP-high phenotype is associated with energy metabolism alterations in colon adenocarcinoma
Cited by: 13
Author(s): Maria S. Fedorova, George S. Krasnov, E. N. Lukyanova, Andrew R. Zaretsky, Alexey A. Dmitriev, Nataliya V. Melnikova, Alexey Moskalev, Sergey L. Kharitonov, Elena A. Pudova, Zulfiya G. Guvatova, Anastasiya A. Kobelyatskaya, Irina A. Ishina, Е. Н. Славнова, Anastasiya V. Lipatova, М. А. Черниченко, Д. В. Сидоров, A. Yu. Popov, Marina V. Kiseleva, А. Д. Каприн, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 2
Published: over 7 years ago

10.1186/s12881-020-01145-4

Development of an immunogenomic landscape for the competing endogenous RNAs network of peri-implantitis
Cited by: 7
Author(s): Li Yang, Jie Zheng, Chan Juan Gong, Keng Fu Lan, Yu Qing Shen, Xiao Jun Ding
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12885-020-07391-2

Development and validation of a novel pseudogene pair-based prognostic signature for prediction of overall survival in patients with hepatocellular carcinoma
Cited by: 6
Author(s): Yajuan Du, Ying Gao
Software Mentions: 2
Published: almost 6 years ago

10.18632/aging.101754

Development of a prognostic index based on an immunogenomic landscape analysis of papillary thyroid cancer
Cited by: 96
Author(s): Peng Lin, Yesong Guo, Lin Shi, Xiao‐Jiao Li, Hong Yang, Yun He, Qing Li, Yi‐Wu Dang, Kang‐Lai Wei, Gang Chen
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-017-1030-6

Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment
Cited by: 6
Author(s): Katherine García, Cristian Yáñez, Nicolás Plaza, Francisca Peña, Pedro Sepúlveda, Diliana Pérez-Reytor, Romilio T. Espejo
Software Mentions: 2
Published: about 9 years ago

10.1186/s12866-021-02157-7

Complete genome sequence analysis of the peanut pathogen Ralstonia solanacearum strain Rs-P.362200
Cited by: 4
Author(s): Kun Chen, Lihui Wang, Hua Chen, Chong Zhang, Shanshan Wang, Panpan Chu, Shaokang Li, Huiwen Fu, Tao Sun, Menghan Liu, Qiang Yang, Huasong Zou
Software Mentions: 2
Published: over 5 years ago

10.18632/aging.103024

Systematic analysis of bacteriostatic mechanism of flavonoids using transcriptome and its therapeutic effect on vaginitis
Cited by: 10
Author(s): Zeyan Lin, Yanyan Lin, Zhengbing Zhang, Jin-Xing Shen, Caimei Yang, Meijiao Jiang, Yongming Hou
Software Mentions: 2
Published: over 6 years ago

10.1186/s12885-021-07845-1

Inhibitory effect of sodium butyrate on colorectal cancer cells and construction of the related molecular network
Cited by: 16
Author(s): Yang Xi, Zhuang Jing, Wei Wu, Chun Zhang, Qi Qi, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: over 5 years ago

10.1186/s12894-021-00875-8

Identification of novel biomarkers in Hunner’s interstitial cystitis using the CIBERSORT, an algorithm based on machine learning
Cited by: 11
Author(s): Kaining Lu, Shan Wei, Zhengyi Wang, Kerong Wu, Junhui Jiang, Zejun Yan, Yufeng Cheng
Software Mentions: 2
Published: almost 5 years ago

10.1042/BCJ20200309

Use of the Polo-like kinase 4 (PLK4) inhibitor centrinone to investigate intracellular signalling networks using SILAC-based phosphoproteomics
Cited by: 19
Author(s): Dominic P. Byrne, Christopher J. Clarke, Philip Brownridge, Anton Kalyuzhnyy, Simon Perkins, Amy E. Campbell, David Mason, Andrew R. Jones, Patrick A. Eyers
Software Mentions: 2
Published: about 6 years ago

10.1155/2020/6285987

Construction and Investigation of MicroRNA-mRNA Regulatory Network of Gastric Cancer with Helicobacter pylori Infection
Cited by: 1
Author(s): Ping Yang, Junjie Liu, Tian‐Ci Yang, Lei Zhang, Peiyou Gong, Boqing Li, Xiuzhi Zhou
Software Mentions: 2
Published: about 6 years ago

10.1186/s12885-021-08434-y

Comprehensive analysis of suppressor of cytokine signaling proteins in human breast Cancer
Cited by: 9
Author(s): Mingyu Sun, Cheng Tang, Jun Li, Wenli Jiang, Haifeng Yu, Dong Fang, Chun Huang, Youlutuziayi Rixiati
Software Mentions: 2
Published: about 5 years ago

10.1186/s12885-020-07075-x

Immune-related genes in tumor-specific CD4+ and CD8+ T cells in colon cancer
Cited by: 15
Author(s): Yang Xi, Wei Wu, Yuefen Pan, Qing Zhou, Jingying Xu, Shuwen Han
Software Mentions: 2
Published: about 6 years ago

10.1093/bioinformatics/btaa1089

PC2P: parameter-free network-based prediction of protein complexes
Cited by: 17
Author(s): Sara Omranian, Aleksandra Angeleska, Zoran Nikoloski
Software Mentions: 2
Published: over 5 years ago

10.6026/97320630015480

Identification of putative drought-responsive genes in rice using gene co-expression analysis
Cited by: 22
Author(s): Yan-Mei Lv, Lei Xu, Komivi Dossa, Kun Zhou, Mei-Ling Zhu, Hongjun Xie, Tang Shan-jun, Yaying Yu, Ximing Guo, Bin Zhou
Software Mentions: 2
Published: about 7 years ago

10.1186/s12896-020-00667-2

Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures
Cited by: 8
Author(s): Dylan G. Chitwood, Qinghua Wang, Kathryn Elliott, Aiyana Bullock, Dwon Jordana, Zhigang Li, Cathy H. Wu, Sarah W. Harcum, Christopher Saski
Software Mentions: 2
Published: over 5 years ago

10.1186/s40659-021-00334-6

Identification of blood-derived candidate gene markers and a new 7-gene diagnostic model for multiple sclerosis
Cited by: 13
Author(s): Xin Chen, Huilian Hou, Huimin Qiao, Haolong Fan, Tianyi Zhao, Mei Dong
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20102491

Deep Insight into the Transcriptome of the Single Silk Gland of Bombyx mori
Cited by: 10
Author(s): Run Shi, Sanyuan Ma, Ting He, Jian Peng, Tong Zhang, Xiaoxu Chen, Xiaogang Wang, Jiasong Chang, Qingyou Xia, Ping Zhao
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20163930

Depicting the Core Transcriptome Modulating Multiple Abiotic Stresses Responses in Sesame (Sesamum indicum L.)
Cited by: 45
Author(s): Komivi Dossa, Marie Ali Mmadi, Rong Zhou, Tianyuan Zhang, Ruqi Su, Yujuan Zhang, Linhai Wang, Jun You
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20225539

Changes in Calcium Homeostasis and Gene Expression Implicated in Epilepsy in Hippocampi of Mice Overexpressing ORAI1
Cited by: 12
Author(s): Łukasz Majewski, Bartosz Wojtaś, Filip Maciąg, Jacek Kuźnicki
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12915-020-00792-6

Epigenomics and genotype-phenotype association analyses reveal conserved genetic architecture of complex traits in cattle and human
Cited by: 27
Author(s): Shuli Liu, Ying Yu, Shengli Zhang, John B. Cole, Albert Tenesa, Ting Wang, T. G. McDaneld, Li Ma, George E. Liu, Lingzhao Fang
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21020474

A Biostimulant Obtained from the Seaweed Ascophyllum nodosum Protects Arabidopsis thaliana from Severe Oxidative Stress
Cited by: 37
Author(s): Mohammad Amin Omidbakhshfard, Neerakkal Sujeeth, Saurabh Gupta, Nooshin Omranian, Kieran J. Guinan, Yariv Brotman, Zoran Nikoloski, Alisdair R. Fernie, Bernd Mueller‐Roeber, Tsanko Gechev
Software Mentions: 2
Published: over 6 years ago

10.1155/2020/8951907

Baicalin Represses C/EBP<i>β</i> via Its Antioxidative Effect in Parkinson’s Disease
Cited by: 24
Author(s): Kecheng Lei, Yijue Shen, Yijing He, Liwen Zhang, Jingxing Zhang, Weifang Tong, Yawei Xu, Lingjing Jin
Software Mentions: 2
Published: about 6 years ago

10.3390/ani10112184

Liver Expression of IGF2 and Related Proteins in ZBED6 Gene-Edited Pig by RNA-Seq
Cited by: 4
Author(s): Hailin Zhao, Mingli Wu, Shirong Liu, Xiaoqin Tang, Xiaohua Yi, Li Qi, Shuhui Wang, Xiuzhu Sun
Software Mentions: 2
Published: over 5 years ago