bioconductor: clusterProfiler | Projects

10.3389/fonc.2020.00215

A Novel Long Non-coding RNA, MSTRG.51053.2 Regulates Cisplatin Resistance by Sponging the miR-432-5p in Non-small Cell Lung Cancer Cells
Cited by: 24
Author(s): Jie Zhang, Chuanqin Xu, Y Gao, Yi Wang, Zongli Ding, Yueming Zhang, Wenyi Shen, Yulong Zheng, Yufeng Wan
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.566430

Hypoxia Correlates With Poor Survival and M2 Macrophage Infiltration in Colorectal Cancer
Cited by: 33
Author(s): Ling Qi, Jiani Chen, Yanmei Yang, Wangxiong Hu
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2020.606765

KIF21B Expression in Osteosarcoma and Its Regulatory Effect on Osteosarcoma Cell Proliferation and Apoptosis Through the PI3K/AKT Pathway
Cited by: 7
Author(s): Songjia Ni, Jianjun Li, Sujun Qiu, Yingming Xie, Kaiqin Gong, Yang Duan
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.542063

Construction of Gene Modules and Analysis of Prognostic Biomarkers for Cervical Cancer by Weighted Gene Co-Expression Network Analysis
Cited by: 7
Author(s): Jiamei Liu, Shengye Liu, Xianghong Yang
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.550986

MicroRNAs Expression Patterns Predict Tumor Mutational Burden in Colorectal Cancer
Cited by: 5
Author(s): Jiahao Huang, Haizhou Liu, Yang Zhao, Tao Luo, Jungang Liu, Junjie Liu, Xiaoyan Pan, Weizhong Tang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.713017

AGTRAP Is a Prognostic Biomarker Correlated With Immune Infiltration in Hepatocellular Carcinoma
Cited by: 5
Author(s): Shanshan Liu, Wei Zhao, Xuemei Li, Zhang La, Yu Tang Gao, Qiling Peng, Changsheng Du, Ning Jiang
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2021.604784

Influence of Immune Microenvironment on Diagnosis and Prognosis of Head and Neck Squamous Cell Carcinoma
Cited by: 8
Author(s): Guo-Hong Liu, Chunjue Yuan, Jiaojiao Ma, Yunbao Pan, Haibo Xu
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.622085

High Iodine Induces the Proliferation of Papillary and Anaplastic Thyroid Cancer Cells via AKT/Wee1/CDK1 Axis
Cited by: 2
Author(s): Chunpeng Lv, Yanhui Gao, Jinyin Yao, Yan Li, Qun Lou, Meichen Zhang, Qing Tian, Yanmei Yang, Dianjun Sun
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2019.00957

ACAT1 and Metabolism-Related Pathways Are Essential for the Progression of Clear Cell Renal Cell Carcinoma (ccRCC), as Determined by Co-expression Network Analysis
Cited by: 32
Author(s): Liang Chen, Tianchen Peng, Yongwen Luo, Fenfang Zhou, Gang Wang, Kaiyu Qian, Yu Xiao, Xinghuan Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.639724

Loss of IL-34 Expression Indicates Poor Prognosis in Patients With Lung Adenocarcinoma
Cited by: 7
Author(s): Zhendong Wang, Zhu Jun, Tianyi Wang, Hao Zhou, Jinjie Wang, Zhanghao Huang, Haijian Zhang, Jiahai Shi
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.659201

Prognostic Prediction of Cytogenetically Normal Acute Myeloid Leukemia Based on a Gene Expression Model
Cited by: 4
Author(s): Yang Liu, Houyu Zhang, Xue Yang, Ting Lu, Shihui Ma, Hui Cheng, Kuangyu Yen, Tao Cheng
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2020.544476

Down-Regulation of MiR-181c-5p Promotes Epithelial-to-Mesenchymal Transition in Laryngeal Squamous Cell Carcinoma via Targeting SERPINE1
Cited by: 11
Author(s): Xin Li, Ping Wu, Yuhua Fan, Yalan Liu, Xing Fang, Wei Wang, Suping Zhao
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2018.00368

Integrated Analysis of a Competing Endogenous RNA Network Revealing a Prognostic Signature for Cervical Cancer
Cited by: 11
Author(s): Leilei Xia, Han Wang, Shengyun Cai, Xiaoling Su, Jizi Shen, Meng Qi, Yu Chen, Li Li, Jiuqiong Yan, Caihong Zhang, Man Xu
Software Mentions: 3
Published: about 6 years ago

10.3390/genes11080850

Genome-Wide DNA Methylation and Gene Expression Profiles in Cows Subjected to Different Stress Level as Assessed by Cortisol in Milk
Cited by: 11
Author(s): Marcello Del Corvo, Silvia Bongiorni, Bruno Stefanon, Sandy Sgorlon, Alessio Valentini, Paolo Ajmone‐Marsan, Giovanni Chillemi
Software Mentions: 3
Published: over 4 years ago

10.3390/genes11101187

Exaggerated Autophagy in Stanford Type A Aortic Dissection: A Transcriptome Pilot Analysis of Human Ascending Aortic Tissues
Cited by: 13
Author(s): Ze-Hua Zhou, Yan Liu, Xiyu Zhu, Xingming Tang, Yali Wang, Junxia Wang, Can Xu, Dongjin Wang, Jie Du, Qing Zhou
Software Mentions: 3
Published: about 4 years ago

10.1093/gbe/evab042

A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants
Cited by: 21
Author(s): Yichao Geng, Chao Cai, Scott A. M. McAdam, Jo Ann Banks, Jennifer H. Wisecaver, Yun Zhou
Software Mentions: 3
Published: over 3 years ago

10.1186/s13073-019-0636-8

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma
Cited by: 92
Author(s): Markus Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Rieß, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velić, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, Hans‐Georg Rammensee
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giaa006

Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
Cited by: 28
Author(s): Delu Ning, Wu Tao, Xiao Liang-jun, Ting Ma, Wen‐Liang Fang, Dong Run-quan, Fuliang Cao
Software Mentions: 3
Published: almost 5 years ago

10.1080/19490976.2021.1980347

Fusobacterium nucleatum promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization
Cited by: 69
Author(s): Chaochao Xu, Li Fan, Yaowang Lin, Weiyi Shen, Yadong Qi, Ying Zhang, Zhehang Chen, Lan Wang, Yan Long, Tongyao Hou, Jianmin Si, Shujie Chen
Software Mentions: 3
Published: almost 4 years ago

10.1186/s41065-021-00187-9

Identification of potential biomarkers for pathogenesis of Alzheimer’s disease
Cited by: 10
Author(s): Huimin Wang, Xiujiang Han, Sheng Gao
Software Mentions: 3
Published: over 3 years ago

10.1186/s13027-021-00357-4

Identification of key genes in hepatitis B associated hepatocellular carcinoma based on WGCNA
Cited by: 6
Author(s): Chang Liu, Qinghai Dai, Qian Ding, Min Wei, Xiaohong Kong
Software Mentions: 3
Published: over 3 years ago

10.3390/insects12090809

Solitary Living Brings a Decreased Weight and an Increased Agility to the Domestic Silkworm, Bombyx mori
Cited by: 2
Author(s): Zhenglin Zhu, Yuting Tan, Siyu Xiao, Zhufen Guan, Wen Zhao, Zhijun Dai, Gexin Liu, Ze Zhang
Software Mentions: 3
Published: about 3 years ago

10.1172/jci.insight.136477

Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs
Cited by: 10
Author(s): Xiaofeng Chen, Mingrui Guo, Yuanyuan Duan, Feng Jiang, Hao Wu, Shanshan Dong, Xiaorong Zhou, Hlaing Nwe Thynn, C.C. Liu, Lin Zhang, Yan Guo, Tie‐Lin Yang
Software Mentions: 3
Published: about 4 years ago

10.1172/jci.insight.137427

Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis
Cited by: 31
Author(s): Diana J. Garay‐Baquero, Cory H. White, Naomi F. Walker, Marc Tebruegge, Hannah F. Schiff, César Ugarte-Gil, Stephen Morris-Jones, Ben G. Marshall, Antigoni Manousopoulou, John Adamson, Andrés F. Vallejo, Magdalena K. Bielecka, Robert J. Wilkinson, Liku B. Tezera, Christopher H. Woelk, Spiros D. Garbis, Paul Elkington
Software Mentions: 3
Published: about 4 years ago

10.1172/jci.insight.146098

SLFN11 captures cancer-immunity interactions associated with platinum sensitivity in high-grade serous ovarian cancer
Cited by: 9
Author(s): C Winkler, Matthew King, Julie Berthe, Domenico Ferraioli, Anna Garuti, Federica Grillo, Jaime Rodriguez‐Canales, Lorenzo Ferrando, Nicolás Chopin, Isabelle Ray‐Coquard, Oona Delpuech, Davide Bedognetti, Alberto Ballestrero, Elisabetta Leo, Gabriele Zoppoli
Software Mentions: 3
Published: about 3 years ago

10.1186/s40104-020-00494-7

Identification of novel molecular markers of mastitis caused by Staphylococcus aureus using gene expression profiling in two consecutive generations of Chinese Holstein dairy cattle
Cited by: 26
Author(s): Di Wang, Lei Liu, Serafino M. A. Augustino, Tao Duan, Thomas J. Hall, David E. MacHugh, Junling Dou, Yi Zhang, Yachun Wang, Ying Yu
Software Mentions: 3
Published: about 4 years ago

10.7150/jca.38741

Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
Cited by: 13
Author(s): Xin Yan, Xun Fu, Zixin Guo, Xiaoping Li, Tong-Zu Liu, Sheng Li
Software Mentions: 3
Published: almost 5 years ago

10.7150/jca.51493

Development and validation of nomogram with tumor microenvironment-related genes and clinical factors for predicting overall survival of endometrial cancer
Cited by: 3
Author(s): Qian Chen, Shu Wang, Jinghe Lang
Software Mentions: 3
Published: almost 4 years ago

10.1111/jcmm.15687

Development of a prognostic gene signature based on an immunogenomic infiltration analysis of osteosarcoma
Cited by: 14
Author(s): Yan Yu, Hongliang Zhang, Tingting Ren, Yi Huang, Xin Liang, Wei Wang, Jianfang Niu, Yu Han, Wei Guo
Software Mentions: 3
Published: over 4 years ago

10.1186/s13321-015-0077-3

ChemDIS: a chemical–disease inference system based on chemical–protein interactions
Cited by: 13
Author(s): Chun Wei Tung
Software Mentions: 3
Published: over 9 years ago

10.1186/2043-9113-1-15

Functional similarity analysis of human virus-encoded miRNAs
Cited by: 14
Author(s): Guangchuang Yu, Qing-Yu He
Software Mentions: 3
Published: almost 14 years ago

10.1038/s41598-021-96274-y

Integrated bioinformatics analysis of differentially expressed genes and immune cell infiltration characteristics in Esophageal Squamous cell carcinoma
Cited by: 14
Author(s): Feng Zuo, Jingge Qu, Xiao Liu, Jinghui Liang, Yongmeng Li, Jianhua Jin, Huiying Zhang, Hui Tian
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-96321-8

Characterization of an in vitro 3D intestinal organoid model by using massive RNAseq-based transcriptome profiling
Cited by: 8
Author(s): Jing Lü, Anna Krepelova, Seyed Mohammad Mahdi Rasa, Francesco Annunziata, Olena Husak, Lisa Adam, Suneetha Nunna, Francesco Neri
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-98637-x

TYROBP, TLR4 and ITGAM regulated macrophages polarization and immune checkpoints expression in osteosarcoma
Cited by: 19
Author(s): Tuo Liang, Jiarui Chen, Guoyong Xu, Zide Zhang, Jiang Xue, Huilan Zeng, Jie Jiang, Tianyou Chen, Zhaojie Qin, Hao Li, Zhen Ye, Yunfeng Nie, Chong Liu, Xinli Zhan
Software Mentions: 3
Published: about 3 years ago

10.1186/s13287-018-1104-x

Comparative analysis of mesenchymal stem cells derived from amniotic membrane, umbilical cord, and chorionic plate under serum-free condition
Cited by: 62
Author(s): Jiao Ma, Jun Wu, Han Liu, Xiangxiang Jiang, Yan Long, Jie Hao, Hongmei Wang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13287-020-01729-0

Role of CD133 in human embryonic stem cell proliferation and teratoma formation
Cited by: 21
Author(s): Hua Wang, Peng Gong, Jie Li, Yudong Fu, Zhongli Zhou, Lin Liu
Software Mentions: 3
Published: over 4 years ago

10.1186/s13287-020-01934-x

Immunosuppressive effects of mesenchymal stem cells on lung B cell gene expression in LPS-induced acute lung injury
Cited by: 18
Author(s): Bing Feng, Jiaqi Zhu, Yanping Xu, Wenyi Chen, Xinyu Sheng, Xudong Feng, Xiaowei Shi, Jingqi Liu, Qiaoling Pan, Jinfeng Yang, Jiong Yu, Lanjuan Li, Cao H
Software Mentions: 3
Published: about 4 years ago

10.1155/2018/5912194

Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs
Cited by: 16
Author(s): Yang Jiao, Hang Zhao, Guodong Chen, Xiongbo Sang, Luhan Yang, Zhen Hou, Wei Si, Bingrong Zheng
Software Mentions: 3
Published: about 6 years ago

10.7150/thno.36585

Comprehensive characterization of the alternative splicing landscape in head and neck squamous cell carcinoma reveals novel events associated with tumorigenesis and the immune microenvironment
Cited by: 66
Author(s): Zhixuan Li, Zi-Qi Zheng, Zhuo-Hui Wei, Lulu Zhang, Li Feng, Lin Li, Ruiqi Liu, Xiao-Dan Huang, Jiawei Lv, Fo-Ping Chen, Xiaoxi He, Jia-Li Guan, Jia Kou, Jingfei Ma, Guan-Qun Zhou
Software Mentions: 3
Published: almost 6 years ago

10.7150/thno.47001

LAMA4 upregulation is associated with high liver metastasis potential and poor survival outcome of Pancreatic Cancer
Cited by: 16
Author(s): Biao Zheng, Jianhua Qu, Kenoki Ohuchida, Haimin Feng, Siew Meng Chong, Zilong Yan, Yicui Piao, Peng Liu, Nan Sheng, Daiki Eguchi, Takao Ohtsuka, Kazuhiro Mizumoto, Zhong Liu, Shazib Pervaiz, Peng Gong, Masafumi Nakamura
Software Mentions: 3
Published: almost 5 years ago

10.7150/thno.46460

Cisplatin prevents breast cancer metastasis through blocking early EMT and retards cancer growth together with paclitaxel
Cited by: 44
Author(s): Haitao Wang, Sen Guo, Seung Jin Kim, Fangyuan Shao, Joshua W. K. Ho, Kuan Un Wong, Zhengqiang Miao, Dapeng Hao, Ming Zhao, Jun Xu, Jianming Zeng, Koon Ho Wong, Lijun Di, Ada Hang Heng Wong, Xiaoling Xu, Chu Xia Deng
Software Mentions: 3
Published: almost 4 years ago

10.3390/toxins11050250

Characterization of MicroRNA and Gene Expression Profiles Following Ricin Intoxication
Cited by: 7
Author(s): Nir Pillar, Danielle Haguel, Meitar Grad, Guy Shapira, Liron Yoffe, Noam Shomron
Software Mentions: 3
Published: over 5 years ago

10.1038/s41398-020-0777-y

Further confirmation of netrin 1 receptor (DCC) as a depression risk gene via integrations of multi-omics data
Cited by: 23
Author(s): Huijuan Li, Na Qu, Hui Li, Xin Cai, Chuyi Zhang, Bao‐Liang Zhong, Shufang Zhang, Jing Chen, Bin Xia, Lu Wang, Qi Jia, Wei Li, Hong Chang, Xiao Xiao, Ming Li, Yi Li
Software Mentions: 3
Published: over 4 years ago

10.1038/s41398-021-01565-7

Intrauterine hyperglycemia impairs memory across two generations
Cited by: 9
Author(s): Kexin Zou, Jun Ren, Shuai Luo, Junyu Zhang, Chuanpeng Zhou, Chengxi Tan, Peng Lv, Xiao Sun, Jian‐Zhong Sheng, Xinmei Liu, He‐Feng Huang, Guo‐Lian Ding
Software Mentions: 3
Published: over 3 years ago

10.1101/2020.05.13.092536

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Cited by: 12
Author(s): Komudi Singh, Yunching Chen, Jennifer Judy, Fayaz Seifuddin, Ilker Tunc, Mehdi Pirooznia
Software Mentions: 3
Published: over 4 years ago

10.1128/mSystems.00216-19

Dual RNA-seq in Streptococcus pneumoniae Infection Reveals Compartmentalized Neutrophil Responses in Lung and Pleural Space
Cited by: 19
Author(s): Neil D. Ritchie, Tom Evans
Software Mentions: 3
Published: about 5 years ago

10.7150/ijbs.40173

Knockdown of SMAD3 inhibits the growth and enhances the radiosensitivity of lung adenocarcinoma via p21 in vitro and in vivo
Cited by: 22
Author(s): Hao Niu, Yiwei Huang, Yan Li, Li Zhang, Mengnan Zhao, Tao Lu, Xiaodong Yang, Zhengcong Chen, Cheng Zhan, Yu Shi, Qun Wang
Software Mentions: 3
Published: almost 5 years ago

10.7150/ijms.46265

Global Gene Expression of Cultured Human Dermal Fibroblasts: Focus on Cell Cycle and Proliferation Status in Improving the Condition of Face Skin
Cited by: 1
Author(s): Bogusław Machaliński, Dorota Rogińska, Aleksandra Wilk, Kamila Szumilas, Piotr Prowans, Edyta Paczkowska, Paweł Szumilas, Iwona Stecewicz, Piotr Zawodny, Maciej Ziętek, Barbara Wiszniewska
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.ijpddr.2018.03.006

The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities
Cited by: 18
Author(s): Kathrin K. Geyer, Sabrina E. Munshi, Martin Vickers, Michael Squance, Toby Wilkinson, Daniel Berrar, Cristian Chaparro, Martin Swain, Karl F. Hoffmann
Software Mentions: 3
Published: over 6 years ago

10.1136/jitc-2020-002115

MUC1-C integrates activation of the IFN-γ pathway with suppression of the tumor immune microenvironment in triple-negative breast cancer
Cited by: 35
Author(s): Nami Yamashita, Mark D. Long, Atsushi Fushimi, Masaaki Yamamoto, Tsuyoshi Hata, Masaru Hagiwara, Atrayee Bhattacharya, Qiang Hu, Kwok-Kin Wong, Song Liu, Donald Küfe
Software Mentions: 3
Published: almost 4 years ago

10.1155/2021/9960905

Identification of CD8+ T Cell-Related Genes: Correlations with Immune Phenotypes and Outcomes of Liver Cancer
Cited by: 6
Author(s): Qi Pan, Ying Cheng, Da‐Chuan Cheng
Software Mentions: 3
Published: over 3 years ago

10.1038/s41388-021-01897-0

Dexamethasone suppresses immune evasion by inducing GR/STAT3 mediated downregulation of PD-L1 and IDO1 pathways
Cited by: 33
Author(s): Zhen Xiang, Zhijun Zhou, Shuzheng Song, Jun Li, Jun Ji, Ranlin Yan, Jiexuan Wang, Wei Cai, Wenjun Hu, Lu Zang, Zhenggang Zhu, Zhen Zhang, Min Li, Yingyan Yu
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.26845

Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish
Cited by: 34
Author(s): Tokiro Ishikawa, Makoto Kashima, Atsushi J. Nagano, Tomoko Ishikawa-Fujiwara, Yasuhiro Kamei, Tomoki Todo, Kazutoshi Mori
Software Mentions: 3
Published: about 7 years ago

10.3390/ijms20051175

Molecular Characterization of Non-responders to Chemotherapy in Serous Ovarian Cancer
Cited by: 9
Author(s): Megan McDonald, E. Salinas, Eric J. Devor, A.M. Newtson, Kristina W. Thiel, Michael J. Goodheart, David Bender, Brian J. Smith, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20092086

Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling
Cited by: 16
Author(s): Yashwanth Subbannayya, Sneha M. Pinto, Korbinian Bösl, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms21010260

Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation
Cited by: 15
Author(s): Na-Hyun Shin, Đỗ Thị Trang, Woo‐Jong Hong, Kiyoon Kang, Chuluuntsetseg Jadamba, Joon‐Kwan Moon, Yo-Han Yoo, Ki‐Hong Jung, Soo-Cheul Yoo
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms21249506

Maize microRNA166 Inactivation Confers Plant Development and Abiotic Stress Resistance
Cited by: 19
Author(s): Na Li, Tianxiao Yang, Zhanyong Guo, Qiusheng Wang, Mao Chai, Mingbo Wu, Xiaoqi Li, Weiya Li, Guangxian Li, Jihua Tang, Guiliang Tang, Zhanhui Zhang
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020834

High-Fat Diets with Differential Fatty Acids Induce Obesity and Perturb Gut Microbiota in Honey Bee
Cited by: 9
Author(s): Xiaofei Wang, Z. Zhong, Xiangyin Chen, Ziyun Hong, Weimin Lin, Xiaohuan Mu, Xiaosong Hu, Hao Zheng
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020810

Optogenetic Stimulation of Prelimbic Pyramidal Neurons Maintains Fear Memories and Modulates Amygdala Pyramidal Neuron Transcriptome
Cited by: 8
Author(s): Daniela Laricchiuta, Giuseppe Sciamanna, Juliette Gimenez, Andrea Termine, Carlo Fabrizio, Silvia Caioli, Francesca Balsamo, Anna Panuccio, Marco De Bardi, Luana Saba, Noemi Passarello, Debora Cutuli, Anna Mattioni, Cristina Zona, Valerio Orlando, Laura Petrosini
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: almost 4 years ago

10.3390/ijms22052442

Immunogenomic Identification for Predicting the Prognosis of Cervical Cancer Patients
Cited by: 10
Author(s): Qun Wang, Aurelia Vattai, Theresa� Vilsmaier, Till Kaltofen, Alexander Steger, Doris Mayr, Sven Mahner, Udo Jeschke, H Heidegger
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22063123

Hyaluronan Synthases’ Expression and Activity Are Induced by Fluid Shear Stress in Bone Marrow-Derived Mesenchymal Stem Cells
Cited by: 4
Author(s): Sebastian Reiprich, Elif Akova, Attila Aszódi, Veronika Schönitzer
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22094371

Connectivity Map Analysis of a Single-Cell RNA-Sequencing -Derived Transcriptional Signature of mTOR Signaling
Cited by: 8
Author(s): Naim Al Mahi, Erik Y. Zhang, Susan G. Sherman, Jane Yu, Mario Medvedovic
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22094919

Genome-Wide Identification and Expression Profiling of the WOX Gene Family in Citrus sinensis and Functional Analysis of a CsWUS Member
Cited by: 9
Author(s): Faiza Shafique Khan, Ren‐Fang Zeng, Zhi-Meng Gan, Jin‐Zhi Zhang, Chun-Gen Hu
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22147414

An Integrative Study of Aortic mRNA/miRNA Longitudinal Changes in Long-Term LVAD Support
Cited by: 1
Author(s): Dana Dlouhá, Peter Ivák, Ivan Netuka, Sarka Benesova, Z. Tučanová, Jaroslav A. Hubacek
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22158059

SARS-CoV-2 Infected Pediatric Cerebral Cortical Neurons: Transcriptomic Analysis and Potential Role of Toll-like Receptors in Pathogenesis
Cited by: 9
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Valeria Calcaterra, Mara Biasin, Gioia Cappelletti, Stephana Carelli, Gian Vincenzo Zuccotti, Maria Antonietta Avanzini, Placido Bramantı, Glória Pelizzo, Emanuela Mazzon
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22158012

Detecting and Profiling Endogenous RNA G-Quadruplexes in the Human Transcriptome
Cited by: 3
Author(s): Rongxin Zhang, Yajun Li, Xingxing Zhang, Ke Xiao, Yue Hou, Hongde Liu, Xiao Sun
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms22179432

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts
Cited by: 0
Author(s): Laurent Winckers, Chris T. Evelo, Egon Willighagen, Martina Kutmon
Software Mentions: 3
Published: about 3 years ago

10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: about 3 years ago

10.1186/s12974-017-0924-4

Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis
Cited by: 19
Author(s): Kathrin Bail, Quirin Notz, Damiano M. Rovituso, Andrea Schampel, Marie Wunsch, Tobias Koeniger, Verena Schropp, Richa Bharti, Claus‐Jürgen Scholz, Konrad Foerstner, Christoph Kleinschnitz, Stefanie Küerten
Software Mentions: 3
Published: over 7 years ago

10.1155/2020/5943014

Bioinformatic Identification of Neuroblastoma Microenvironment-Associated Biomarkers with Prognostic Value
Cited by: 4
Author(s): Yi Wang, Huan Luo, Jing Cao, Chi Ma
Software Mentions: 3
Published: about 4 years ago

10.1155/2020/9235101

Identification of Key Differentially Expressed Transcription Factors in Glioblastoma
Cited by: 8
Author(s): Gang Qin, Beiquan Hu, Xianfeng Li, Rongjie Li, Youshi Meng, Yimei Wang, Donghua Zou, Feng Wang
Software Mentions: 3
Published: over 4 years ago

10.1155/2020/8841622

Cancer Stem Cell Characteristics by Network Analysis of Transcriptome Data Stemness Indices in Breast Carcinoma
Cited by: 2
Author(s): Zeng-Hong Wu, Youjing Zhang, Changli Jia
Software Mentions: 3
Published: about 4 years ago

10.18632/oncotarget.23409

Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Cited by: 46
Author(s): Viktor Arnhold, Karin Schmelz, Jutta Proba, Annika Winkler, Jasmin Wünschel, Joern Toedling, Hedwig E. Deubzer, Annette Künkele, Angelika Eggert, Johannes H. Schulte, Patrick Hundsdoerfer
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.24403

Prognostic role of elevated mir-24-3p in breast cancer and its association with the metastatic process
Cited by: 45
Author(s): Alireza Khodadadi‐Jamayran, Betul Akgol-Oksuz, Yelena Afanasyeva, Adriana Heguy, Marae Thompson, Karina Ray, Ariadna Giró-Perafita, Irma Sánchez, Xifeng Wu, Debu Tripathy, Anne Zeleniuch‐Jacquotte, Aristotelis Tsirigos, Francisco J. Esteva
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.27506

Inducible knock-out of BCL6 in lymphoma cells results in tumor stasis
Cited by: 21
Author(s): Stefanie Schlager, Carina Salomon, Sabine Olt, Christoph Albrecht, Anja Ebert, Oliver Bergner, Johannes Wachter, Francesca Trapani, Daniel Gerlach, Tilman Voss, Anna K. Traunbauer, Julian Jude, Matthias Hinterndorfer, Martina Minnich, Norbert Schweifer, Sophia M. Blake, Vittoria Zinzalla, Barbara Drobits, Darryl B. McConnell, Norbert Kraut, Mark Pearson, Johannes Zuber, Manfred Koegl
Software Mentions: 3
Published: over 4 years ago

10.18632/oncotarget.27555

Zebrafish B cell acute lymphoblastic leukemia: new findings in an old model
Cited by: 8
Author(s): Gilseung Park, Jessica Burroughs‐Garcia, Clay A. Foster, Ameera Hasan, Chiara Borga, J. Kimble Frazer
Software Mentions: 3
Published: over 4 years ago

10.1186/s13018-021-02201-2

Bioinformatics analysis of miRNA and mRNA expression profiles to reveal the key miRNAs and genes in osteoarthritis
Cited by: 13
Author(s): Peiyan Huang, Junguo Wu, Jun Gu, Tie-qi Zhang, Lingfeng Li, Siqun Wang, Ming-Hai Wang
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13018-020-02180-w

A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning
Cited by: 10
Author(s): Jianyong Liu, Ningjie Chen
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13018-020-01839-8

Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data
Cited by: 2
Author(s): Wang Zhao, Yong Ji, Hongwei Bao
Software Mentions: 3
Published: over 4 years ago

10.1186/s13018-021-02329-1

Machine learning analysis of gene expression profile reveals a novel diagnostic signature for osteoporosis
Cited by: 5
Author(s): Xinlei Chen, Guangping Liu, Shuxiang Wang, Haiyang Zhang, Peng Xue
Software Mentions: 3
Published: over 3 years ago

10.3390/jpm11020138

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma
Cited by: 6
Author(s): Yigit Koray Babal, B. Kandemir, Işıl Aksan Kurnaz
Software Mentions: 3
Published: almost 4 years ago

10.1515/med-2020-0405

Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12967-019-1776-8

Circulating miR-3659 may be a potential biomarker of dyslipidemia in patients with obesity
Cited by: 12
Author(s): Miao Liu, Rui-Xing Yin, Shang Ling Pan, Shuo Yang, De Zhai Yang, Wei Lin
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2021.654820

REW-ISA V2: A Biclustering Method Fusing Homologous Information for Analyzing and Mining Epi-Transcriptome Data
Cited by: 5
Author(s): Lin Zhang, Shutao Chen, Jiani Ma, Zhaoyang Liu, Hui Liu
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.00816

Identification and Validation of Key Genes Associated With Systemic Sclerosis-Related Pulmonary Hypertension
Cited by: 21
Author(s): Ji-Na Zheng, Yang Li, Yue-Mei Yan, Hui Shi, Tiantian Zou, Wenqi Shao, Qiang Wang
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.00223

Oncogenic Network and Hub Genes for Natural Killer/T-Cell Lymphoma Utilizing WGCNA
Cited by: 15
Author(s): Huijiao Liu, Mei Liu, Hua You, Xiru Li, Xiangdong Li
Software Mentions: 3
Published: over 4 years ago

10.1186/s12967-018-1593-5

A circRNA–miRNA–mRNA network identification for exploring underlying pathogenesis and therapy strategy of hepatocellular carcinoma
Cited by: 199
Author(s): Dandan Xiong, Yi‐Wu Dang, Peng Lin, Dong‐Yue Wen, Rong‐Quan He, Dan Luo, Zhaoyong Feng, Gang Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.598017

m6A RNA Methylation Regulators Impact Prognosis and Tumor Microenvironment in Renal Papillary Cell Carcinoma
Cited by: 9
Author(s): Lianze Chen, Baohui Hu, Xinyue Song, Lin Wang, Mingyi Ju, Zinan Li, Chuanjian Zhou, Ming Zhang, Wei Qian, Qiutong Guan, Longyang Jiang, Ting Chen, Minjie Wei, Lin Zhao
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.610682

Single-Cell RNA Sequencing of Tocilizumab-Treated Peripheral Blood Mononuclear Cells as an in vitro Model of Inflammation
Cited by: 5
Author(s): Arya Zarinsefat, George C. Hartoularos, Dmitry Rychkov, Priyanka Rashmi, Sindhu Chandran, Flavio Vincenti, Chun J. Yee, Minnie M. Sarwal
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12967-020-02690-5

An analytical method for the identification of cell type-specific disease gene modules
Cited by: 5
Author(s): Jinting Guan, Yiping Lin, Yang Wang, Junchao Gao, Guoli Ji
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2020.00905

Identification of KIF18B as a Hub Candidate Gene in the Metastasis of Clear Cell Renal Cell Carcinoma by Weighted Gene Co-expression Network Analysis
Cited by: 10
Author(s): Huiying Yang, Yukun Wang, Ziyi Zhang, Hua Li
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2021.641100

Unearthing of Key Genes Driving the Pathogenesis of Alzheimer’s Disease via Bioinformatics
Cited by: 5
Author(s): Xingxing Zhao, Hongmei Yao, Xinyi Li
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2020.00716

m6A RNA Methylation Regulators Contribute to Eutopic Endometrium and Myometrium Dysfunction in Adenomyosis
Cited by: 21
Author(s): Junyu Zhai, Shang Li, Sushmita Sen, Jessica Opoku‐Anane, Yanzhi Du, Zi‐Jiang Chen, Linda C. Giudice
Software Mentions: 3
Published: over 4 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223