bioconductor: clusterProfiler | Projects

10.3390/cells9091966

Explorative Combined Lipid and Transcriptomic Profiling of Substantia Nigra and Putamen in Parkinson’s Disease
Cited by: 24
Author(s): Helena Xicoy, Jos F. Brouwers, Bé Wieringa, Gerard J.M. Martens
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/7573689

Identification of Three lncRNAs as Potential Predictive Biomarkers of Lung Adenocarcinoma
Cited by: 14
Author(s): Donghui Jin, Yuxuan Song, Yuan Chen, Peng Zhang
Software Mentions: 3
Published: over 6 years ago

10.1002/prp2.632

Ascorbate sensitizes human osteosarcoma cells to the cytostatic effects of cisplatin
Cited by: 8
Author(s): Naohiro Oka, Akiyoshi Komuro, Hideharu Amano, Suman Dash, Masahiko Honda, Kyoko Ota, Shunji Nishimura, Takeshi Ueda, Masao Akagi, Hitoshi Okada
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.02514

Cell-Wall-Degrading Enzymes Required for Virulence in the Host Selective Toxin-Producing Necrotroph Alternaria alternata of Citrus
Cited by: 46
Author(s): Hongshen Ma, Bin Zhang, Yunpeng Gai, Xuepeng Sun, Kuang‐Ren Chung, Hongye Li
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms22020953

Steroidal Regulation of Oviductal microRNAs Is Associated with microRNA-Processing in Beef Cows
Cited by: 9
Author(s): Ángela María Gonella-Diaza, E. A. Lopes, Kauê Ribeiro da Silva, Ricardo Perecin Nociti, Gabriella Mamede Andrade, Jorge Eduardo Atuesta-Bustos, Juliano Coelho da Silveira, Flávio Vieira Meirelles, Mário Binelli
Software Mentions: 3
Published: over 5 years ago

10.3390/biology10050432

Identifying an lncRNA-Related ceRNA Network to Reveal Novel Targets for a Cutaneous Squamous Cell Carcinoma
Cited by: 7
Author(s): Yaqin Xu, Yingying Dong, Yansha Deng, Qian-Rong Qi, Mi Wu, Hongmei Liang, Qiuyun She, Qing Guo
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms21249506

Maize microRNA166 Inactivation Confers Plant Development and Abiotic Stress Resistance
Cited by: 19
Author(s): Na Li, Tianxiao Yang, Zhanyong Guo, Qiusheng Wang, Mao Chai, Mingbo Wu, Xiaoqi Li, Weiya Li, Guangxian Li, Jihua Tang, Guiliang Tang, Zhanhui Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/genes11080850

Genome-Wide DNA Methylation and Gene Expression Profiles in Cows Subjected to Different Stress Level as Assessed by Cortisol in Milk
Cited by: 11
Author(s): Marcello Del Corvo, Silvia Bongiorni, Bruno Stefanon, Sandy Sgorlon, Alessio Valentini, Paolo Ajmone‐Marsan, Giovanni Chillemi
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2018.00422

Identification of miR-200c and miR141-Mediated lncRNA-mRNA Crosstalks in Muscle-Invasive Bladder Cancer Subtypes
Cited by: 17
Author(s): Guojun Liu, Zihao Chen, И. Г. Данилова, Mikhail A. Bolkov, Irina A. Tuzankina, Guoqing Liu
Software Mentions: 3
Published: almost 8 years ago

10.3390/cells10010006

Direct Neuronal Reprogramming of Common Marmoset Fibroblasts by ASCL1, microRNA-9/9*, and microRNA-124 Overexpression
Cited by: 5
Author(s): Akisa Nemoto, Reona Kobayashi, Sho Yoshimatsu, Yuta Sato, Takahiro Kondo, Andrew S. Yoo, Sho Shiozawa, Hideyuki Okano
Software Mentions: 3
Published: over 5 years ago

10.3390/genes11101187

Exaggerated Autophagy in Stanford Type A Aortic Dissection: A Transcriptome Pilot Analysis of Human Ascending Aortic Tissues
Cited by: 13
Author(s): Ze-Hua Zhou, Yan Liu, Xiyu Zhu, Xingming Tang, Yali Wang, Junxia Wang, Can Xu, Dongjin Wang, Jie Du, Qing Zhou
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.3175

Profiling transcriptomes of human SH-SY5Y neuroblastoma cells exposed to maleic acid
Cited by: 7
Author(s): Chia-Chi Wang, Yin Chi Lin, Yin-Hua Cheng, Chun Wei Tung
Software Mentions: 3
Published: over 9 years ago

10.3390/cancers13112619

AID Contributes to Accelerated Disease Progression in the TCL1 Mouse Transplant Model for CLL
Cited by: 5
Author(s): Maria Schubert, Franz Josef Gassner, Michael Huemer, Jan Philip Höpner, Е. В. Акимова, Markus J. Steiner, Alexander Egle, Richard Greil, Nadja Zaborsky, Roland Geisberger
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/8836493

Identification of Prognostic Biomarkers of Cutaneous Melanoma Based on Analysis of Tumor Mutation Burden
Cited by: 4
Author(s): Jiaqiong Lin, Ye Lin, Zhemin Huang, Xiaoyong Li
Software Mentions: 3
Published: over 5 years ago

10.1186/s13293-020-00288-6

Sex-specific and shared expression profiles of vulnerability and resilience to trauma in brain and blood
Cited by: 11
Author(s): Grace S Kim, Monica Uddin
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.00778

Identification of Potential Biomarkers for CAD Using Integrated Expression and Methylation Data
Cited by: 5
Author(s): Xiaokang Zhang, Yu‐Tao Xiang, Dingdong He, Bin Liang, Chen Wang, Jing Luo, Fang Zheng
Software Mentions: 3
Published: almost 6 years ago

10.1080/21655979.2021.1911557

Identification and validation of the prognostic value of cyclic GMP-AMP synthase-stimulator of interferon (cGAS-STING) related genes in gastric cancer
Cited by: 10
Author(s): Kui-Sheng Yang, Changqing Xu, Jian Lv
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2021.724741

NPM1 Is a Prognostic Biomarker Involved in Immune Infiltration of Lung Adenocarcinoma and Associated With m6A Modification and Glycolysis
Cited by: 37
Author(s): Xusheng Liu, Lu-Meng Zhou, Lingling Yuan, Yan Gao, Xue-Yan Kui, Xiaoyu Liu, Zhijun Pei
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/1971284

Immune-Related lncRNA Risk Signatures Predict Survival of IDH Wild-Type and MGMT Promoter Unmethylated Glioblastoma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2021.662465

Comprehensive Profiling of Inflammatory Factors Revealed That Growth Differentiation Factor-15 Is an Indicator of Disease Severity in COVID-19 Patients
Cited by: 18
Author(s): Xiangyun Teng, Jiaqi Zhang, Yawei Shi, Yuntao Liu, Yanqing Yang, Jinyong He, Shuhong Luo, Youhua Huang, Yanxia Liu, Dongdong Liu, Yizhe Li, Shuangzhe Zhang, Ruo‐Pan Huang, Dawei Wang, Jianhua Xu
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.102178

Prognostic value of genome-wide DNA methylation patterns in noncoding miRNAs and lncRNAs in uveal melanomas
Cited by: 1
Author(s): Zheng Zhang, Dan Xu, Ke–Qing Shi, Minfeng Chen, Fan Liu
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pntd.0009507

Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome
Cited by: 5
Author(s): Víctor Borda, Ronaldo da Silva Francisco, João Batista Pereira de Carvalho, Guilherme Loss de Morais, Átila Duque Rossi, Paula Pezzuto, Girlene S. Azevedo, Bruno Luiz Fonseca Schamber-Reis, Elyzabeth Avvad Portari, Adriana Melo, Maria Elisabeth Lopes Moreira, Letícia da Cunha Guida, Daniela P. Cunha, Leonardo Henrique Ferreira Gomes, Zilton Farias Meira de Vasconcelos, Fabio R. Faucz, Amílcar Tanuri, Constantine A. Stratakis, Renato Santana Aguiar, Cynthia Chester Cardoso, Ana Tereza Ribeiro de Vasconcelos
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.26845

Unfolded protein response transducer IRE1-mediated signaling independent of XBP1 mRNA splicing is not required for growth and development of medaka fish
Cited by: 34
Author(s): Tokiro Ishikawa, Makoto Kashima, Atsushi J. Nagano, Tomoko Ishikawa-Fujiwara, Yasuhiro Kamei, Tomoki Todo, Kazutoshi Mori
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-020-03564-9

Clustering analysis of tumor metabolic networks
Cited by: 10
Author(s): Ichcha Manipur, Ilaria Granata, Lucia Maddalena, Mario Rosario Guarracino
Software Mentions: 3
Published: about 6 years ago

10.1186/s12885-021-08765-w

A TP53 mutation model for the prediction of prognosis and therapeutic responses in head and neck squamous cell carcinoma
Cited by: 9
Author(s): Congyu Shi, Shan Liu, Xudong Tian, Xiaoyi Wang, Pan Gao
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.585259

Construction and Validation of a Novel Glycometabolism-Related Gene Signature Predicting Survival in Patients With Ovarian Cancer
Cited by: 8
Author(s): Lixiao Liu, Luya Cai, Chuan Liu, Shanshan Yu, Bingxin Li, Linmin Pan, Jinduo Zhao, Ye Zhao, Wenfeng Li, Xiaojian Yan
Software Mentions: 3
Published: over 5 years ago

10.26508/lsa.201900441

Essential functions of Runx/Cbfβ in gut conventional dendritic cells for priming Rorγt+ T cells
Cited by: 7
Author(s): Mari Tenno, Alicia Yoke Wei Wong, Mika Ikegaya, Eiji Miyauchi, Wooseok Seo, Peter See, Tamotsu Kato, Takashi Taida, Michiko Ohno-Oishi, Hiroshi Ohno, Hideyuki Yoshida, Florent Ginhoux, Ichiro Taniuchi
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evab042

A De Novo Transcriptome Assembly ofCeratopteris richardiiProvides Insights into the Evolutionary Dynamics of Complex Gene Families in Land Plants
Cited by: 21
Author(s): Yichao Geng, Chao Cai, Scott A. M. McAdam, Jo Ann Banks, Jennifer H. Wisecaver, Yun Zhou
Software Mentions: 3
Published: over 5 years ago

10.1186/s13073-019-0636-8

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma
Cited by: 92
Author(s): Markus Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Rieß, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velić, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, Hans‐Georg Rammensee
Software Mentions: 3
Published: over 7 years ago

10.1038/s41419-020-2483-3

A necroptotic-independent function of MLKL in regulating endothelial cell adhesion molecule expression
Cited by: 23
Author(s): Jialin Dai, Chonghe Zhang, Lin Guo, Hao He, Kai Jiang, Yingying Huang, Xixi Zhang, Haibing Zhang, Wei Wu, Yaoyang Zhang, Ling Lu, Junhao Hu
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-019-5983-8

Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue
Cited by: 208
Author(s): Ruisheng Zhou, Enxin Zhang, Sun Qi-zhong, Zeng Jie Ye, Jianwei Liu, Dajun Zhou, Ying Tang
Software Mentions: 3
Published: about 7 years ago

10.1155/2021/5589101

Weighted Gene Coexpression Network Analysis to Construct Competitive Endogenous RNA Network in Chromogenic Renal Cell Carcinoma
Cited by: 1
Author(s): Yon-Bo Chen, Liang Gao, Jindong Zhang, Jiang Guo, Ping-Hong You, Liang-you Tang, Ying-Wen Liu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12885-020-07393-0

HLA-DPA1 gene is a potential predictor with prognostic values in multiple myeloma
Cited by: 11
Author(s): Jie Yang, Fei Wang, Baoan Chen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-019-3041-9

Analyzing the regulation of miRNAs on protein-protein interaction network in Hodgkin lymphoma
Cited by: 2
Author(s): Huimin Lei, Wenxu Liu, Jiarui Si, Ju Wang, Tao Zhang
Software Mentions: 3
Published: almost 7 years ago

10.1155/2021/6653802

Multiomics Analysis of Transcriptome, Epigenome, and Genome Uncovers Putative Mechanisms for Dilated Cardiomyopathy
Cited by: 5
Author(s): Li Liu, Jianjun Huang, Yan Liu, Xingshou Pan, Zhile Li, Liufang Zhou, Tengfang Lai, Chengcai Chen, Baomin Wei, Jianjiao Mo, Qinjiang Wei, Yan Wang, Xian-Nan Huang, Zhen Zhang, Zhuohua Zhang, Meidan Huang, Fengzhen He, Zhaohe Huang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08331-4

Hsa_circ_0000301 facilitates the progression of cervical cancer by targeting miR-1228-3p/IRF4 Axis
Cited by: 9
Author(s): Zhanfeng Deng, Fangfang Dai, Quan Zhou, Yanxiang Cheng
Software Mentions: 3
Published: about 5 years ago

10.1186/s12935-019-1052-2

Identification and analysis of long non-coding RNA related miRNA sponge regulatory network in bladder urothelial carcinoma
Cited by: 28
Author(s): Jiawu Wang, Chengyao Zhang, Yan Wu, Weiyang He, Xin Gou
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.630794

Integrative Analysis of TP53INP2 in Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Ruoyan Cao, Suyang Liu, Jiayu Zhang, Xianyue Ren, Xijuan Chen, Bin Cheng, Juan Xia
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giaa006

Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
Cited by: 28
Author(s): Delu Ning, Wu Tao, Xiao Liang-jun, Ting Ma, Wen‐Liang Fang, Dong Run-quan, Fuliang Cao
Software Mentions: 3
Published: over 6 years ago

10.1111/jcmm.15687

Development of a prognostic gene signature based on an immunogenomic infiltration analysis of osteosarcoma
Cited by: 14
Author(s): Yan Yu, Hongliang Zhang, Tingting Ren, Yi Huang, Xin Liang, Wei Wang, Jianfang Niu, Yu Han, Wei Guo
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2019.02016

Continuous Developmental and Early Life Trichloroethylene Exposure Promoted DNA Methylation Alterations in Polycomb Protein Binding Sites in Effector/Memory CD4+ T Cells
Cited by: 10
Author(s): Stephanie D. Byrum, Charity L. Washam, John M. Patterson, Kanan K. Vyas, Kathleen M. Gilbert, Sarah J. Blossom
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.703210

Identification and Validation of a PPP1R12A-Related Five-Gene Signature Associated With Metabolism to Predict the Prognosis of Patients With Prostate Cancer
Cited by: 3
Author(s): Zhihao Zou, Ren Liu, Yingke Liang, Rui Zhou, Qi-Shan Dai, Zhengxue Han, Minyao Jiang, Yangjia Zhuo, Yixun Zhang, Yuanfa Feng, Xinwen Zhu, Shanghua Cai, Jundong Lin, Zhenfeng Tang, Weide Zhong, Yu‐Xiang Liang
Software Mentions: 3
Published: almost 5 years ago

10.1080/19490976.2021.1980347

Fusobacterium nucleatum promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization
Cited by: 69
Author(s): Chaochao Xu, Li Fan, Yaowang Lin, Weiyi Shen, Yadong Qi, Ying Zhang, Zhehang Chen, Lan Wang, Yan Long, Tongyao Hou, Jianmin Si, Shujie Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.683173

Expression of AOX1 Predicts Prognosis of Clear Cell Renal Cell Carcinoma
Cited by: 3
Author(s): Luyang Xiong, Yuchen Feng, Wei Hu, Jiahong Tan, Shusheng Li, Hongjie Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s13148-018-0603-z

TRIM4 is associated with neural tube defects based on genome-wide DNA methylation analysis
Cited by: 12
Author(s): Henan Zhang, Yi Guo, Hui Gu, Xiaowei Wei, Wei Ma, Dan Liú, Kun Yu, Wenting Luo, Lifang Ma, Yusi Liu, Jianming Xue, Jieting Huang, Wang Yan, Shanshan Jia, Naixuan Dong, Hongyan Wang, Zhengwei Yuan
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.8855

Prediction of antiviral drugs against African swine fever viruses based on protein–protein interaction analysis
Cited by: 9
Author(s): Zhaozhong Zhu, Yunshi Fan, Yang Liu, Taijiao Jiang, Yang Cao, Yousong Peng
Software Mentions: 3
Published: over 6 years ago

10.1186/s41065-021-00187-9

Identification of potential biomarkers for pathogenesis of Alzheimer’s disease
Cited by: 10
Author(s): Huimin Wang, Xiujiang Han, Sheng Gao
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2020.02039

Crosstalk Between the MSI Status and Tumor Microenvironment in Colorectal Cancer
Cited by: 160
Author(s): Anqi Lin, Jian Zhang, Peng Luo
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13018-020-01839-8

Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data
Cited by: 2
Author(s): Wang Zhao, Yong Ji, Hongwei Bao
Software Mentions: 3
Published: about 6 years ago

10.1186/s12885-019-6327-4

Molecular subtyping improves prognostication of Stage 2 colorectal cancer
Cited by: 13
Author(s): Rachel Purcell, Sebastian Schmeier, Yee Chen Lau, John F. Pearson, F. A. Frizelle
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/3170261

lncRNA PAPPA-AS1 Induces the Development of Hypertrophic Scar by Upregulating TLR4 through Interacting with TAF15
Cited by: 5
Author(s): Pengju Fan, Yongjie Wang, Jingjing Li, Man Fang
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-021-04107-7

PPFIBP1 induces glioma cell migration and invasion through FAK/Src/JNK signaling pathway
Cited by: 16
Author(s): Caihua Dong, Xinying Li, Yang Jiao, Detian Yuan, Yuanshuai Zhou, Yina Zhang, Guohua Shi, Ruobing Zhang, Jianping Liu, Peng Fu, Minxuan Sun
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13148-017-0381-z

Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study
Cited by: 21
Author(s): Young‐Dan Cho, Pil-Jong Kim, Hong-Gee Kim, Yang‐Jo Seol, Yong-Moo Lee, In‐Chul Rhyu, Hyun‐Mo Ryoo
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12915-021-01004-5

Transcription initiation of distant core promoters in a large-sized genome of an insect
Cited by: 2
Author(s): Qing Liu, Feng Jiang, Jie Zhang, Li Xiao, Le Kang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.562971

ASDmiR: A Stepwise Method to Uncover miRNA Regulation Related to Autism Spectrum Disorder
Cited by: 5
Author(s): Chenchen Xiong, Shaoping Sun, Weili Jiang, Junpeng Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/7947208

Clinical Features and Prognostic Impact of Coexpression Modules Constructed by WGCNA for Diffuse Large B-Cell Lymphoma
Cited by: 4
Author(s): Jie Xiao, Xuemei Wang, Hao Bai
Software Mentions: 3
Published: about 6 years ago

10.1186/s13027-021-00357-4

Identification of key genes in hepatitis B associated hepatocellular carcinoma based on WGCNA
Cited by: 6
Author(s): Chang Liu, Qinghai Dai, Qian Ding, Min Wei, Xiaohong Kong
Software Mentions: 3
Published: over 5 years ago

10.3390/insects12090809

Solitary Living Brings a Decreased Weight and an Increased Agility to the Domestic Silkworm, Bombyx mori
Cited by: 2
Author(s): Zhenglin Zhu, Yuting Tan, Siyu Xiao, Zhufen Guan, Wen Zhao, Zhijun Dai, Gexin Liu, Ze Zhang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41416-020-01178-9

EMTome: a resource for pan-cancer analysis of epithelial-mesenchymal transition genes and signatures
Cited by: 94
Author(s): Suhas Vasaikar, Abhijeet Deshmukh, Petra den Hollander, Sridevi Addanki, Nick A. Kuburich, Sriya Kudaravalli, Robiya Joseph, Jeffrey T. Chang, Rama Soundararajan, Sendurai A. Mani
Software Mentions: 3
Published: over 5 years ago

10.1186/s12885-021-08687-7

A novel survival model based on a Ferroptosis-related gene signature for predicting overall survival in bladder cancer
Cited by: 22
Author(s): Yingchun Liang, Fangdie Ye, Chenyang Xu, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12915-019-0687-8

Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
Cited by: 45
Author(s): Lingzhao Fang, Shuli Liu, Mei Liu, Xiaolong Kang, Shudai Lin, Bingjie Li, Erin E. Connor, VI Ransom L. Baldwin, Albert Tenesa, Li Ma, George E. Liu, Congjun Li
Software Mentions: 3
Published: almost 7 years ago

10.1172/jci.insight.136477

Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs
Cited by: 10
Author(s): Xiaofeng Chen, Mingrui Guo, Yuanyuan Duan, Feng Jiang, Hao Wu, Shanshan Dong, Xiaorong Zhou, Hlaing Nwe Thynn, C.C. Liu, Lin Zhang, Yan Guo, Tie‐Lin Yang
Software Mentions: 3
Published: almost 6 years ago

10.1172/jci.insight.137427

Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis
Cited by: 31
Author(s): Diana J. Garay‐Baquero, Cory H. White, Naomi F. Walker, Marc Tebruegge, Hannah F. Schiff, César Ugarte-Gil, Stephen Morris-Jones, Ben G. Marshall, Antigoni Manousopoulou, John Adamson, Andrés F. Vallejo, Magdalena K. Bielecka, Robert J. Wilkinson, Liku B. Tezera, Christopher H. Woelk, Spiros D. Garbis, Paul Elkington
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.102652

Integrated transcriptome expression profiling reveals a novel lncRNA associated with L-DOPA-induced dyskinesia in a rat model of Parkinson’s disease
Cited by: 8
Author(s): Chunlei Han, Yunpeng Liu, Yun‐Peng Sui, Ning Chen, Tingting Du, Ying Jiang, Chenjia Guo, Kailiang Wang, Qiao Wang, Shiying Fan, Michio Shimabukuro, Fangang Meng, Yuan Fang, Jianguo Zhang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.566024

Novel Gene Signature Reveals Prognostic Model in Acute Myeloid Leukemia
Cited by: 8
Author(s): Ying Qu, Shuying Zhang, Yanzhang Qu, Heng Guo, Suling Wang, Xuemei Wang, Tianjiao Huang, Hong Zhou
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40659-018-0192-5

Dysregulation of NCAPG, KNL1, miR-148a-3p, miR-193b-3p, and miR-1179 may contribute to the progression of gastric cancer
Cited by: 52
Author(s): Bin Song, Juan Du, Defeng Song, Jian Ren, Yan Feng
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12885-020-07628-0

Analyses of metastasis-associated genes in IDH wild-type glioma
Cited by: 4
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.4042

Uncovering the relationship and mechanisms of Tartary buckwheat (Fagopyrum tataricum) and Type II diabetes, hypertension, and hyperlipidemia using a network pharmacology approach
Cited by: 18
Author(s): Chaolong Lu, Qi Zheng, Qi Shen, Chi Song, Zhiming Zhang
Software Mentions: 3
Published: over 8 years ago

10.1186/s12885-020-07159-8

The prognostic values of m6A RNA methylation regulators in uveal melanoma
Cited by: 22
Author(s): Jing Tang, Qi Wan, Jianqun Lu
Software Mentions: 3
Published: about 6 years ago

10.1172/jci.insight.146098

SLFN11 captures cancer-immunity interactions associated with platinum sensitivity in high-grade serous ovarian cancer
Cited by: 9
Author(s): C Winkler, Matthew King, Julie Berthe, Domenico Ferraioli, Anna Garuti, Federica Grillo, Jaime Rodriguez‐Canales, Lorenzo Ferrando, Nicolás Chopin, Isabelle Ray‐Coquard, Oona Delpuech, Davide Bedognetti, Alberto Ballestrero, Elisabetta Leo, Gabriele Zoppoli
Software Mentions: 3
Published: almost 5 years ago

10.18632/oncotarget.24089

An autophagy-related gene expression signature for survival prediction in multiple cohorts of hepatocellular carcinoma patients
Cited by: 18
Author(s): Peng Lin, Rong‐Quan He, Yi‐Wu Dang, Dong‐Yue Wen, Jie Ma, Yun He, Gang Chen, Hong Yang
Software Mentions: 3
Published: over 8 years ago

10.1186/s40104-020-00494-7

Identification of novel molecular markers of mastitis caused by Staphylococcus aureus using gene expression profiling in two consecutive generations of Chinese Holstein dairy cattle
Cited by: 26
Author(s): Di Wang, Lei Liu, Serafino M. A. Augustino, Tao Duan, Thomas J. Hall, David E. MacHugh, Junling Dou, Yi Zhang, Yachun Wang, Ying Yu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2016.00137

Gene Coexpression Analyses Differentiate Networks Associated with Diverse Cancers Harboring TP53 Missense or Null Mutations
Cited by: 19
Author(s): Kathleen Klein, Karim Oualkacha, Marie-Hélène Lafond, Sahir Bhatnagar, Patricia N. Tonin, Celia M.T. Greenwood
Software Mentions: 3
Published: about 10 years ago

10.18632/oncotarget.23409

Reactivating TP53 signaling by the novel MDM2 inhibitor DS-3032b as a therapeutic option for high-risk neuroblastoma
Cited by: 46
Author(s): Viktor Arnhold, Karin Schmelz, Jutta Proba, Annika Winkler, Jasmin Wünschel, Joern Toedling, Hedwig E. Deubzer, Annette Künkele, Angelika Eggert, Johannes H. Schulte, Patrick Hundsdoerfer
Software Mentions: 3
Published: over 8 years ago

10.1155/2020/4574792

Functional Modular Network Identifies the Key Genes of Preoperative Inhalation Anesthesia and Intravenous Anesthesia in Off-Pump Coronary Artery Bypass Grafting
Cited by: 3
Author(s): Hongfei Zhao, Weitian Wang, Liping Liu, Junlong Wang, Quanzhang Yan
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms22063123

Hyaluronan Synthases’ Expression and Activity Are Induced by Fluid Shear Stress in Bone Marrow-Derived Mesenchymal Stem Cells
Cited by: 4
Author(s): Sebastian Reiprich, Elif Akova, Attila Aszódi, Veronika Schönitzer
Software Mentions: 3
Published: over 5 years ago

10.7150/jca.38741

Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
Cited by: 13
Author(s): Xin Yan, Xun Fu, Zixin Guo, Xiaoping Li, Tong-Zu Liu, Sheng Li
Software Mentions: 3
Published: over 6 years ago

10.18632/oncotarget.24403

Prognostic role of elevated mir-24-3p in breast cancer and its association with the metastatic process
Cited by: 45
Author(s): Alireza Khodadadi‐Jamayran, Betul Akgol-Oksuz, Yelena Afanasyeva, Adriana Heguy, Marae Thompson, Karina Ray, Ariadna Giró-Perafita, Irma Sánchez, Xifeng Wu, Debu Tripathy, Anne Zeleniuch‐Jacquotte, Aristotelis Tsirigos, Francisco J. Esteva
Software Mentions: 3
Published: over 8 years ago

10.1155/2017/2421459

Prediction and Validation of Hub Genes Associated with Colorectal Cancer by Integrating PPI Network and Gene Expression Data
Cited by: 19
Author(s): Yong Xiong, Wenxian You, Rong Wang, Linglong Peng, Zhongxue Fu
Software Mentions: 3
Published: over 9 years ago

10.1155/2021/9991726

Identification of Vital Hub Genes and Potential Molecular Pathways of Dermatomyositis by Bioinformatics Analysis
Cited by: 3
Author(s): Xueren Ouyang, Yuning Zeng, Xiaotao Jiang, Haowen Xu, Yile Ning
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-020-07216-2

Comprehensive analysis of prognostic tumor microenvironment-related genes in osteosarcoma patients
Cited by: 19
Author(s): Chuan Hu, Chuan Liu, Shaoqi Tian, Yuanhe Wang, Rui Shen, Huili Rao, Jianyi Li, Yu Xu, Bo Chen, Ye Lin
Software Mentions: 3
Published: almost 6 years ago

10.3389/fcvm.2020.597932

Expression Profiles of Circular RNA in Human Atrial Fibrillation With Valvular Heart Diseases
Cited by: 13
Author(s): Xiyu Zhu, Xingming Tang, Hoshun Chong, Hailong Cao, Fudong Fan, Jun Pan, Dongjin Wang, Qing Zhou
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2020.01785

Pregnancy Downregulates Plasmablast Metabolic Gene Expression Following Influenza Without Altering Long-Term Antibody Function
Cited by: 5
Author(s): Dominika Swieboda, Elizabeth Q. Littauer, Jacob Beaver, Lisa K. Mills, Katherine M. Bricker, E. Stein Esser, Olivia Q Antao, Dahnide T Williams, Ioanna Skountzou
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13018-021-02329-1

Machine learning analysis of gene expression profile reveals a novel diagnostic signature for osteoporosis
Cited by: 5
Author(s): Xinlei Chen, Guangping Liu, Shuxiang Wang, Haiyang Zhang, Peng Xue
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.628539

Cell Type-Specific Predictive Models Perform Prioritization of Genes and Gene Sets Associated With Autism
Cited by: 7
Author(s): Jinting Guan, Yang Wang, Yiping Lin, Qingyang Yin, Yibo Zhuang, Guoli Ji
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2019.01215

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome
Cited by: 8
Author(s): Gabriella Farries, Kenneth Bryan, C. L. McGivney, Paul A. McGettigan, K. F. Gough, John A. Browne, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/9991255

Identification of 5 Hub Genes Related to the Early Diagnosis, Tumour Stage, and Poor Outcomes of Hepatitis B Virus-Related Hepatocellular Carcinoma by Bioinformatics Analysis
Cited by: 13
Author(s): Rui Qiang, Zitong Zhao, Lu Tang, Qian Wang, Yanhong Wang, Qian Huang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fimmu.2021.747020

Integrated Analysis of Prognostic Genes Associated With Ischemia–Reperfusion Injury in Renal Transplantation
Cited by: 5
Author(s): Di Zhang, Yicun Wang, Song Zeng, Min Zhang, Xin Zhang, Yuxuan Wang, Zijian Zhang, Xi Wang, Xiaosong Hu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12885-020-07489-7

Development and validation of a fourteen- innate immunity-related gene pairs signature for predicting prognosis head and neck squamous cell carcinoma
Cited by: 18
Author(s): Fujun Zhang, Yu Liu, Yixin Yang, Kai Yang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: almost 6 years ago

10.7150/jca.51493

Development and validation of nomogram with tumor microenvironment-related genes and clinical factors for predicting overall survival of endometrial cancer
Cited by: 3
Author(s): Qian Chen, Shu Wang, Jinghe Lang
Software Mentions: 3
Published: over 5 years ago

10.1186/s13068-019-1630-5

Responses of Methanosarcina barkeri to acetate stress
Cited by: 21
Author(s): Pinjing He, Haowen Duan, Wenfeng Han, Yang Liu, Liming Shao
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.574304

Characterization and Development of Microsatellite Markers in Pseudotaxus chienii (Taxaceae) Based on Transcriptome Sequencing
Cited by: 11
Author(s): Ruixiang Xu, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-019-1890-9

High throughput circRNA sequencing analysis reveals novel insights into the mechanism of nitidine chloride against hepatocellular carcinoma
Cited by: 49
Author(s): Dandan Xiong, Zhaoyong Feng, Zhiyong Lai, Yue Qin, Limin Liu, Hao-xuan Fu, Rong‐Quan He, Huayu Wu, Yi‐Wu Dang, Gang Chen, Dan Luo
Software Mentions: 3
Published: almost 7 years ago

10.3389/fcell.2021.629941

Identification of a ceRNA Network in Lung Adenocarcinoma Based on Integration Analysis of Tumor-Associated Macrophage Signature Genes
Cited by: 8
Author(s): Lei Zhang, Kai Zhang, Shasha Li, Ruizhe Zhang, Yang Yang, Qi Wang, Song Zhao, Yang Li, Yi Zhang, Jiaxiang Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.675411

Oncostatin M Maintains Naïve Pluripotency of mESCs by Tetraploid Embryo Complementation (TEC) Assay
Cited by: 0
Author(s): Xiaoying Ye, Chenglei Tian, Linlin Liu, Guofeng Feng, Kairang Jin, Haiying Wang, Jiyu Chen
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-021-03932-0

An integrative transcriptome study reveals Ddit4/Redd1 as a key regulator of cancer cachexia in rodent models
Cited by: 14
Author(s): Mengyuan Niu, Li Li, Zhonglan Su, Lulu Wei, Wenyuan Pu, Chen Zhao, Yibing Ding, Junaid Wazir, Wangsen Cao, Shiyu Song, Qian Gao, Hongwei Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fcell.2020.611222

Construction and Validation of a Cell Cycle-Related Robust Prognostic Signature in Colon Cancer
Cited by: 8
Author(s): Zhiyuan Zhang, Jingwen Chen, Shichao Zhu, Dongqing Zhu, Jiacheng Xu, Guodong He
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0241924

Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis
Cited by: 7
Author(s): Wenju Mo, Yuqin Ding, Shuai Zhao, Dayang Zou, Xiaowen Ding
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.10803

The long non-coding RNA MEG3 plays critical roles in the pathogenesis of cholesterol gallstone
Cited by: 1
Author(s): Chenyin Qian, Weiqing Qiu, Jie Zhang, Zhiyong Shen, Hua Liu, Yongjie Zhang
Software Mentions: 3
Published: over 5 years ago

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