10.3389/fgene.2020.589076

Identification of mRNAs and lncRNAs Involved in the Regulation of Follicle Development in Goat
Cited by: 7
Author(s): Zhifeng Zhao, Xian Zou, Tingting Lu, Ming Deng, Yaokun Li, Yongqing Guo, Baoli Sun, Guangbin Liu, Dewu Liu
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101496

Signatures of photo-aging and intrinsic aging in skin were revealed by transcriptome network analysis
Cited by: 25
Author(s): Byuri Angela Cho, Seong-Keun Yoo, Jong-Soo Seo
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-021-07536-y

Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene
Cited by: 1
Author(s): Ran Di, Qiu Yue Liu, Shu Hui Song, Dong Tian, Jian He, Ying Ge, Xiang Yu Wang, Wen Hu, Joram M. Mwacharo, Zhang Yuan Pan, Jian Dong Wang, Qing Ma, G. L. Cao, Hui Jin, Liang Xiao, M. X. Chu
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3356-0

The influence of pro-longevity gene Gclc overexpression on the age-dependent changes in Drosophila transcriptome and biological functions
Cited by: 17
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Ekaterina Proshkina, А. С. Белый, Alexander Fedintsev, Svetlana Zhikrivetskaya, Zulfiya G. Guvatova, А. Ф. Садритдинова, А. В. Снежкина, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 3
Published: over 9 years ago

10.18632/aging.103974

Comprehensive analysis of cancer hallmarks in cutaneous melanoma and identification of a novel unfolded protein response as a prognostic signature
Cited by: 7
Author(s): Qi Wan, Lin Jin, Zhichong Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2020.00223

Oncogenic Network and Hub Genes for Natural Killer/T-Cell Lymphoma Utilizing WGCNA
Cited by: 15
Author(s): Huijiao Liu, Mei Liu, Hua You, Xiru Li, Xiangdong Li
Software Mentions: 3
Published: over 6 years ago

10.7150/thno.47001

LAMA4 upregulation is associated with high liver metastasis potential and poor survival outcome of Pancreatic Cancer
Cited by: 16
Author(s): Biao Zheng, Jianhua Qu, Kenoki Ohuchida, Haimin Feng, Siew Meng Chong, Zilong Yan, Yicui Piao, Peng Liu, Nan Sheng, Daiki Eguchi, Takao Ohtsuka, Kazuhiro Mizumoto, Zhong Liu, Shazib Pervaiz, Peng Gong, Masafumi Nakamura
Software Mentions: 3
Published: over 6 years ago

10.1186/2047-783X-18-44

RETRACTED ARTICLE: Gene expression profiling analysis of hepatocellular carcinoma
Cited by: 4
Author(s): Deyong Kong, Heming Chen, Weiqun Chen, Shuiyi Liu, Hui Wang, Tangwei Wu, Hongda Lu, Qing Kong, Xiaodong Huang, Zhongxin Lu
Software Mentions: 3
Published: over 12 years ago

10.1038/s42003-020-0827-2

Igf2bp3 maintains maternal RNA stability and ensures early embryo development in zebrafish
Cited by: 37
Author(s): Fan Ren, Qiaohong Lin, Gaorui Gong, Xian Du, Daojun Hong, Wenying Qin, Ran Miao, Yang Xiong, Rui Xiao, Xiaohui Li, Jian‐Fang Gui, Jie Mei
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07576-4

Long non-coding RNA pairs to assist in diagnosing sepsis
Cited by: 18
Author(s): Xubin Zheng, Kwong‐Sak Leung, Man‐Hon Wong, Lixin Cheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-020-07099-4

Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed
Cited by: 3
Author(s): Xi Liu, Frédéric Herault, Christian Diot, Erwan Corre
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms9061193

Comparative Transcriptomic and Molecular Pathway Analyses of HL-CZ Human Pro-Monocytic Cells Expressing SARS-CoV-2 Spike S1, S2, NP, NSP15 and NSP16 Genes
Cited by: 8
Author(s): Anshika Sharma, Ju Lynn Ong, Mun Fai Loke, Eng Guan Chua, Joseph J Lee, Hyungwon Choi, Yee Joo Tan, Sunil K. Lal, Vincent T. K. Chow
Software Mentions: 3
Published: about 5 years ago

10.1155/2018/9415409

Time-Course Comparative Metabolite Profiling under Osmotic Stress in Tolerant and Sensitive Tibetan Hulless Barley
Cited by: 50
Author(s): Hongjun Yuan, Xingquan Zeng, Jian Shi, Qijun Xu, Yulin Wang, Dunzhu Jabu, Zha Sang, Nyima Tashi
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.3575

Identification of four prognostic LncRNAs for survival prediction of patients with hepatocellular carcinoma
Cited by: 44
Author(s): Zhonghao Wang, Qian Wu, Shu Feng, Yanhua Zhao, Chuanmin Tao
Software Mentions: 3
Published: about 9 years ago

10.1007/s12250-021-00370-2

Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway
Cited by: 13
Author(s): Miao Wang, Liying Wang, Haizhou Liu, Jianjun Chen, Di Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.598017

m6A RNA Methylation Regulators Impact Prognosis and Tumor Microenvironment in Renal Papillary Cell Carcinoma
Cited by: 9
Author(s): Lianze Chen, Baohui Hu, Xinyue Song, Lin Wang, Mingyi Ju, Zinan Li, Chuanjian Zhou, Ming Zhang, Wei Qian, Qiutong Guan, Longyang Jiang, Ting Chen, Minjie Wei, Lin Zhao
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.7534

CeRNA network analysis and functional enrichment of salt sensitivity of blood pressure by weighted-gene co-expression analysis
Cited by: 3
Author(s): Han Cao, Qin Han, Zheng Liu, Wei Peng, Chunyue Guo, Yanyan Sun, Christine Pao, Yu Tao Xiang, Ling Zhang
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.ijpddr.2018.03.006

The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities
Cited by: 18
Author(s): Kathrin K. Geyer, Sabrina E. Munshi, Martin Vickers, Michael Squance, Toby Wilkinson, Daniel Berrar, Cristian Chaparro, Martin Swain, Karl F. Hoffmann
Software Mentions: 3
Published: about 8 years ago

10.1186/s40478-018-0584-3

Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration
Cited by: 64
Author(s): Tuan Leng Tay, Sagar, Jana Dautzenberg, Dominic Grün, Marco Prinz
Software Mentions: 3
Published: almost 8 years ago

10.7150/thno.36585

Comprehensive characterization of the alternative splicing landscape in head and neck squamous cell carcinoma reveals novel events associated with tumorigenesis and the immune microenvironment
Cited by: 66
Author(s): Zhixuan Li, Zi-Qi Zheng, Zhuo-Hui Wei, Lulu Zhang, Li Feng, Lin Li, Ruiqi Liu, Xiao-Dan Huang, Jiawei Lv, Fo-Ping Chen, Xiaoxi He, Jia-Li Guan, Jia Kou, Jingfei Ma, Guan-Qun Zhou
Software Mentions: 3
Published: over 7 years ago

10.1155/2018/5912194

Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs
Cited by: 16
Author(s): Yang Jiao, Hang Zhao, Guodong Chen, Xiongbo Sang, Luhan Yang, Zhen Hou, Wei Si, Bingrong Zheng
Software Mentions: 3
Published: over 7 years ago

10.1186/s12935-021-02031-6

The underlying molecular mechanisms and prognostic factors of RNA binding protein in colorectal cancer: a study based on multiple online databases
Cited by: 1
Author(s): Qinglian He, Ziqi Li, Lijun Xue, Qian Zhou, Haibing Yu, Yuanlin Ding, Guofeng Xu, Wei Zhu
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-021-07683-2

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms
Cited by: 11
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Belén Picó, Panagiotis Boumpas, Eleni Tsaliki, Harry S. Paris, Athanasios Tsaftaris, Apostolos Kalivas, Ιfigeneia Mellidou, Ioannis Ganopoulos
Software Mentions: 3
Published: about 5 years ago

10.1186/s13287-020-01934-x

Immunosuppressive effects of mesenchymal stem cells on lung B cell gene expression in LPS-induced acute lung injury
Cited by: 18
Author(s): Bing Feng, Jiaqi Zhu, Yanping Xu, Wenyi Chen, Xinyu Sheng, Xudong Feng, Xiaowei Shi, Jingqi Liu, Qiaoling Pan, Jinfeng Yang, Jiong Yu, Lanjuan Li, Cao H
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13567-020-00850-5

Integrated time-serial transcriptome networks reveal common innate and tissue-specific adaptive immune responses to PRRSV infection
Cited by: 18
Author(s): Bee-Oh Lim, Sang–Wook Kim, kyu sang lim, Chang Gi Jeong, Seung Chai Kim, Sang Myeong Lee, Choi Kyu Park, M.F.W. te Pas, Haesu Gho, Tae Hun Kim, Kyung Tai Lee, Won Il Kim, Jun Mo Kim
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-018-5217-5

Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses
Cited by: 4
Author(s): Nicolaas Van Renne, Ruifang Wei, Nathalie Pochet, Hans Nauwynck
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-021-07894-7

Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae
Cited by: 4
Author(s): Shi‐Mei Huo, Zhichao Yan, Na Zhang, Lei Chen, Jing‐Tao Sun, Ary A. Hoffmann, Xiao‐Yue Hong
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/5943014

Bioinformatic Identification of Neuroblastoma Microenvironment-Associated Biomarkers with Prognostic Value
Cited by: 4
Author(s): Yi Wang, Huan Luo, Jing Cao, Chi Ma
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.103437

Subtype-specific risk models for accurately predicting the prognosis of breast cancer using differentially expressed autophagy-related genes
Cited by: 5
Author(s): Baoai Han, He Zhang, Yuying Zhu, Xingxing Han, Zhiyong Wang, Zicong Gao, Yue Yuan, Ruinan Tian, Fei Zhang, Ruifang Niu
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40168-021-01061-6

Gut microbiome variation modulates the effects of dietary fiber on host metabolism
Cited by: 54
Author(s): Sofia M Murga-Garrido, Qilin Hong, Tzu Wen L. Cross, Evan Hutchison, Jessica Han, Sydney P. Thomas, Eugenio I. Vivas, John M. Denu, Danilo Guillermo Ceschin, Zheng-Zheng Tang, Federico E. Rey
Software Mentions: 3
Published: about 5 years ago

10.1155/2019/1205942

PIM1, CYP1B1, and HSPA2 Targeted by Quercetin Play Important Roles in Osteoarthritis Treatment by<i> Achyranthes bidentata</i>
Cited by: 7
Author(s): Dujun Ma, Yu Tian, Liping Peng, Lixin Wang, Zhouwei Liao, Wenming Xu
Software Mentions: 3
Published: about 7 years ago

10.3389/fimmu.2021.649475

Genome-Wide Gene Expression Analysis of Mtb-Infected DC Highlights the Rapamycin-Driven Modulation of Regulatory Cytokines via the mTOR/GSK-3β Axis
Cited by: 3
Author(s): Marilena P. Etna, Martina Severa, Valerio Licursi, Manuela Pardini, Melania Cruciani, Fabiana Rizzo, Elena Giacomini, Gianfranco Macchia, Orazio Palumbo, Raffaella Stallone, Massimo Carella, Mark Livingstone, Rodolfo Negri, Sandra Pellegrini, Eliana M. Coccia
Software Mentions: 3
Published: over 5 years ago

10.1186/s13287-020-01729-0

Role of CD133 in human embryonic stem cell proliferation and teratoma formation
Cited by: 21
Author(s): Hua Wang, Peng Gong, Jie Li, Yudong Fu, Zhongli Zhou, Lin Liu
Software Mentions: 3
Published: about 6 years ago

10.15252/msb.20199167

Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states
Cited by: 16
Author(s): Siyu Sun, Anastasia Baryshnikova, Nathan Brandt, David Gresham
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/8886897

Integrated Analysis of lncRNA-Associated ceRNA Network Identifies Two lncRNA Signatures as a Prognostic Biomarker in Gastric Cancer
Cited by: 7
Author(s): Shuyan Zhang, Shanshan Li, Jiuxin Guo, Ningyi Li, Caining Zhang, Jie Liu
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.stem.2018.08.017

Epidermal Tissue Adapts to Restrain Progenitors Carrying Clonal p53 Mutations
Cited by: 63
Author(s): Kiyohito Murai, Greta Skrupskelyte, Gabriel Piedrafita, Michael W. Hall, Vasiliki Kostiou, Swee Hoe Ong, Tibor Nagy, Alex Cagan, David Goulding, Allon M. Klein, Benjamin A. Hall, Philip H. Jones
Software Mentions: 3
Published: almost 8 years ago

10.1155/2020/2071593

High Expression of UBB, RAC1, and ITGB1 Predicts Worse Prognosis among Nonsmoking Patients with Lung Adenocarcinoma through Bioinformatics Analysis
Cited by: 11
Author(s): Huan Deng, Yo-Ping Huang, Li Wang, Ming Chen
Software Mentions: 3
Published: almost 6 years ago

10.7150/ijms.46265

Global Gene Expression of Cultured Human Dermal Fibroblasts: Focus on Cell Cycle and Proliferation Status in Improving the Condition of Face Skin
Cited by: 1
Author(s): Bogusław Machaliński, Dorota Rogińska, Aleksandra Wilk, Kamila Szumilas, Piotr Prowans, Edyta Paczkowska, Paweł Szumilas, Iwona Stecewicz, Piotr Zawodny, Maciej Ziętek, Barbara Wiszniewska
Software Mentions: 3
Published: over 5 years ago

10.1186/s13287-018-1104-x

Comparative analysis of mesenchymal stem cells derived from amniotic membrane, umbilical cord, and chorionic plate under serum-free condition
Cited by: 62
Author(s): Jiao Ma, Jun Wu, Han Liu, Xiangxiang Jiang, Yan Long, Jie Hao, Hongmei Wang
Software Mentions: 3
Published: over 7 years ago

10.1186/s13015-015-0035-7

An integrative approach for a network based meta-analysis of viral RNAi screens
Cited by: 6
Author(s): Sandeep Amberkar, Lars Kaderali
Software Mentions: 3
Published: over 11 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.654820

REW-ISA V2: A Biclustering Method Fusing Homologous Information for Analyzing and Mining Epi-Transcriptome Data
Cited by: 5
Author(s): Lin Zhang, Shutao Chen, Jiani Ma, Zhaoyang Liu, Hui Liu
Software Mentions: 3
Published: about 5 years ago

10.1155/2021/9652420

MicroRNA-520a Suppresses Pathogenesis and Progression of Non-Small-Cell Lung Cancer through Targeting the RRM2/Wnt Axis
Cited by: 11
Author(s): Youhua Xie, Congyu Xue, Shuai Guo, Lei Yang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0255660

Effect of food source availability in the salivary gland transcriptome of the unique burying beetle Nicrophorus pustulatus (Coleoptera: Silphidae)
Cited by: 0
Author(s): Christian Ayala-Ortiz, Jacob W. Farriester, Carrie J Pratt, Anna K Goldkamp, Jessica Matts, W. Wyatt Hoback, John E. Gustafson, Darren E. Hagen
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.654955

Transcriptome Analysis of Choroid and Retina From Tree Shrew With Choroidal Neovascularization Reveals Key Signaling Moieties
Cited by: 6
Author(s): Jie Jia, Dandan Qiu, Caixia Lü, Wenguang Wang, Na Li, Yuanyuan Han, Pinfen Tong, Xiaomei Sun, Min Wu, Jiejie Dai
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-98637-x

TYROBP, TLR4 and ITGAM regulated macrophages polarization and immune checkpoints expression in osteosarcoma
Cited by: 19
Author(s): Tuo Liang, Jiarui Chen, Guoyong Xu, Zide Zhang, Jiang Xue, Huilan Zeng, Jie Jiang, Tianyou Chen, Zhaojie Qin, Hao Li, Zhen Ye, Yunfeng Nie, Chong Liu, Xinli Zhan
Software Mentions: 3
Published: almost 5 years ago

10.18632/oncotarget.27555

Zebrafish B cell acute lymphoblastic leukemia: new findings in an old model
Cited by: 8
Author(s): Gilseung Park, Jessica Burroughs‐Garcia, Clay A. Foster, Ameera Hasan, Chiara Borga, J. Kimble Frazer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-019-5842-7

Transcriptional reprogramming caused by the geminivirus Tomato yellow leaf curl virus in local or systemic infections in Nicotiana benthamiana
Cited by: 23
Author(s): Mengshi Wu, Xue Ding, Xing Fu, Rosa Lozano‐Durán
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-96321-8

Characterization of an in vitro 3D intestinal organoid model by using massive RNAseq-based transcriptome profiling
Cited by: 8
Author(s): Jing Lü, Anna Krepelova, Seyed Mohammad Mahdi Rasa, Francesco Annunziata, Olena Husak, Lisa Adam, Suneetha Nunna, Francesco Neri
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphar.2021.690118

Identification of Tumor Necrosis Factor-Alpha (TNF-α) Inhibitor in Rheumatoid Arthritis Using Network Pharmacology and Molecular Docking
Cited by: 23
Author(s): Liang Bai, Hao Chen, Peng Zhou, Jun Yu
Software Mentions: 3
Published: about 5 years ago

10.1016/j.molmet.2020.101066

Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1
Cited by: 7
Author(s): Serena Barilla, Ning Liang, Enrichetta Mileti, Raphaëlle Ballaire, Marie Lhomme, Maharajah Ponnaiah, Sophie Lemoine, Antoine Soprani, Jean‐François Gautier, Ez-Zoubir Amri, Wilfried Le Goff, Nicolas Venteclef, Eckardt Treuter
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20092086

Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling
Cited by: 16
Author(s): Yashwanth Subbannayya, Sneha M. Pinto, Korbinian Bösl, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 3
Published: over 7 years ago

10.1186/s13578-021-00555-y

DNA primase subunit 1 deteriorated progression of hepatocellular carcinoma by activating AKT/mTOR signaling and UBE2C-mediated P53 ubiquitination
Cited by: 25
Author(s): Mengqi Zhu, Mengna Wu, Saiyan Bian, Qisheng Song, Mingbing Xiao, Hua Huang, You Li, Jianping Zhang, Jie Zhang, Chun Cheng, Wenkai Ni, Wenjie Zheng
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/8357585

Comprehensive Analysis of CD163 as a Prognostic Biomarker and Associated with Immune Infiltration in Glioblastoma Multiforme
Cited by: 3
Author(s): Hao Li, Di Wang, Bolong Yi, Heng Cai, Zhuo Xi, Xin Lou, Zhen Li
Software Mentions: 3
Published: about 5 years ago

10.1186/s12943-016-0548-9

Prediction of chemo-response in serous ovarian cancer
Cited by: 27
Author(s): Jesús González Bosquet, A.M. Newtson, Raphael S. Chung, Kristina W. Thiel, Timothy Ginader, Michael J. Goodheart, Kimberly K. Leslie, Brian J. Smith
Software Mentions: 3
Published: almost 10 years ago

10.1155/2020/8841622

Cancer Stem Cell Characteristics by Network Analysis of Transcriptome Data Stemness Indices in Breast Carcinoma
Cited by: 2
Author(s): Zeng-Hong Wu, Youjing Zhang, Changli Jia
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2019.01498

Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities
Cited by: 5
Author(s): Daniela Beißer, Christina Böck, Martin W. Hahn, Matthijs Vos, Bernd Sures, Sven Rahmann, Jens Boenigk
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2019.01144

miRNA Genetic Variants Alter Their Secondary Structure and Expression in Patients With RASopathies Syndromes
Cited by: 11
Author(s): João Batista Pereira de Carvalho, Guilherme Loss de Morais, Thays Cristine dos Santos Vieira, Natana Chaves Rabelo, Juan Clinton Llerena, Sayonara Gonzalez, Ana Tereza Ribeiro de Vasconcelos
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0250278

Molecular subtyping of Alzheimer’s disease with consensus non-negative matrix factorization
Cited by: 14
Author(s): Chunlei Zheng, Rong Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.560997

Pan-Cancer Analysis of Head-to-Head Gene Pairs in Terms of Transcriptional Activity, Co-expression and Regulation
Cited by: 6
Author(s): Yunqin Chen, Hong Li, Yuanyuan Li, Yixue Li
Software Mentions: 3
Published: over 5 years ago

10.1186/s12935-021-02185-3

Calculated identification of mutator-derived lncRNA signatures of genomic instability to predict the clinical outcome of muscle-invasive bladder cancer
Cited by: 1
Author(s): Yingchun Liang, Fangdie Ye, Cheng Zhang, Yuxi Ou, Lina Zou, Yun Hu, Jimeng Hu, Haowen Jiang
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.102989

Overexpression of miR-10a-5p facilitates the progression of osteoarthritis
Cited by: 9
Author(s): Huizi Li, Xiaolong Xu, Nan Lin, Dawei Wang, Yiming Lin, Zhongzhen Su, Huading Lu
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/1186458

DNA Hypomethylation of DOCK1 Leading to High Expression Correlates with Neurologic Deterioration and Poor Function Outcomes after Spontaneous Intracerebral Hemorrhage
Cited by: 5
Author(s): Yufeng Gao, Xiaojie Fu, Lie Yu, Di Zhang, Zhaoming Lu, Kefei Cui, Chang Liu, Man Jiang, Jianping Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphys.2020.617492

Mitochondrial Calcium Uniporter Deficiency in Zebrafish Causes Cardiomyopathy With Arrhythmia
Cited by: 13
Author(s): Adam D. Langenbacher, Hirohito Shimizu, Welkin Hsu, Yali Zhao, Alexandria Borges, Carla M. Koehler, Jau-Nian Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2018.00618

Coactivation of TLR2 and TLR8 in Primary Human Monocytes Triggers a Distinct Inflammatory Signaling Response
Cited by: 14
Author(s): Korbinian Bösl, Miriam S. Giambelluca, Markus Haug, Marit Bugge, Terje Espevik, Richard K. Kandasamy, Bjarte Bergstrøm
Software Mentions: 3
Published: about 8 years ago

10.3389/fphys.2020.565240

Identification of Pathways and Key Genes in Venous Remodeling After Arteriovenous Fistula by Bioinformatics Analysis
Cited by: 10
Author(s): Jie Kong, Zhen Wang, Bin Zhao, Maofeng Gong, Jianbin Zhang, Zhaoxuan Lu, Yangyi Zhou, Changhong Liang, Haobo Su, Wensheng Lou, Guoping Chen, Jianping Gu, Xu He, Jianyan Wen
Software Mentions: 3
Published: over 5 years ago

10.7150/ijbs.40173

Knockdown of SMAD3 inhibits the growth and enhances the radiosensitivity of lung adenocarcinoma via p21 <i>in vitro</i> and <i>in vivo</i>
Cited by: 22
Author(s): Hao Niu, Yiwei Huang, Yan Li, Li Zhang, Mengnan Zhao, Tao Lu, Xiaodong Yang, Zhengcong Chen, Cheng Zhan, Yu Shi, Qun Wang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.564780

Distinct Extracellular RNA Profiles in Different Plasma Components
Cited by: 8
Author(s): Jing Jia, Shangdong Yang, Jinyong Huang, Hong Zheng, Ying He, Liang Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2020.554520

Characterization of the DREBA4-Type Transcription Factor (SlDREBA4), Which Contributes to Heat Tolerance in Tomatoes
Cited by: 14
Author(s): Lianzhen Mao, Minghua Deng, Shurui Jiang, Haishan Zhu, Yang Zhou, Yanling Yue, Kai Zhao
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-96274-y

Integrated bioinformatics analysis of differentially expressed genes and immune cell infiltration characteristics in Esophageal Squamous cell carcinoma
Cited by: 14
Author(s): Feng Zuo, Jingge Qu, Xiao Liu, Jinghui Liang, Yongmeng Li, Jianhua Jin, Huiying Zhang, Hui Tian
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2021.638792

Commonly and Specifically Activated Defense Responses in Maize Disease Lesion Mimic Mutants Revealed by Integrated Transcriptomics and Metabolomics Analysis
Cited by: 4
Author(s): Xiaohuan Mu, Jiankun Li, Zhuangzhuang Dai, XU Li-ping, Tianyuan Fan, Jie Teng, Mengyao Chen, Mingyue Gou
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22179432

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts
Cited by: 0
Author(s): Laurent Winckers, Chris T. Evelo, Egon Willighagen, Martina Kutmon
Software Mentions: 3
Published: almost 5 years ago

10.1515/med-2020-0405

Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: over 6 years ago

10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: almost 5 years ago

10.1186/2043-9113-1-15

Functional similarity analysis of human virus-encoded miRNAs
Cited by: 14
Author(s): Guangchuang Yu, Qing-Yu He
Software Mentions: 3
Published: over 15 years ago

10.7717/peerj.8324

Identification of target genes in neuroinflammation and neurodegeneration after traumatic brain injury in rats
Cited by: 11
Author(s): Jianwei Zhao, Chen Xu, Heli Cao, Lin Zhang, Xuyang Wang, Shiwen Chen
Software Mentions: 3
Published: over 6 years ago

10.1002/cam4.3739

Bladder cancer cell‐intrinsic PD‐L1 signals promote mTOR and autophagy activation that can be inhibited to improve cytotoxic chemotherapy
Cited by: 19
Author(s): Deyi Zhang, Ryan M. Reyes, Erica Osta, Suresh Kari, Harshita Gupta, Álvaro Padrón, Anand Kornepati, Aravind Kancharla, Xiujie Sun, Yilun Deng, Bogang Wu, Ratna K. Vadlamudi, Rong Li, Robert S. Svatek, Tyler J. Curiel
Software Mentions: 3
Published: over 5 years ago

10.1186/s13321-015-0077-3

ChemDIS: a chemical–disease inference system based on chemical–protein interactions
Cited by: 13
Author(s): Chun Wei Tung
Software Mentions: 3
Published: about 11 years ago

10.3389/fgene.2020.590770

Systemic Analysis of the Prognosis-Associated Alternative Polyadenylation Events in Breast Cancer
Cited by: 5
Author(s): Yi Zhang, Yuzhi Wang, Cheng‐Wen Li, Tianhua Jiang
Software Mentions: 3
Published: almost 6 years ago

10.1128/mSystems.00216-19

Dual RNA-seq in Streptococcus pneumoniae Infection Reveals Compartmentalized Neutrophil Responses in Lung and Pleural Space
Cited by: 19
Author(s): Neil D. Ritchie, Tom Evans
Software Mentions: 3
Published: almost 7 years ago

10.3390/jpm11020138

Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma
Cited by: 6
Author(s): Yigit Koray Babal, B. Kandemir, Işıl Aksan Kurnaz
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.7413

Identification of a novel four-lncRNA signature as a prognostic indicator in cirrhotic hepatocellular carcinoma
Cited by: 17
Author(s): Linkun Ma, Chao Deng
Software Mentions: 3
Published: about 7 years ago

10.3389/fvets.2021.659840

Differential DNA Methylation and Gene Expression Between ALV-J-Positive and ALV-J-Negative Chickens
Cited by: 3
Author(s): Yongde Yan, Huihua Zhang, Shuang Gao, Huanmin Zhang, Xinheng Zhang, Weiguo Chen, Wencheng Lin, Qingmei Xie
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.00810

Identification of a Novel Immune-Related Prognostic Biomarker and Small-Molecule Drugs in Clear Cell Renal Cell Carcinoma (ccRCC) by a Merged Microarray-Acquired Dataset and TCGA Database
Cited by: 12
Author(s): Guan-Fa Xiao, Xin Yan, Zhao Chun-hua, Ren‐Jie Zhang, Tong-Zu Liu, Wanli Hu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pbio.3000783

Two unequally redundant "helper" immune receptor families mediate Arabidopsis thaliana intracellular "sensor" immune receptor functions
Cited by: 111
Author(s): Svenja C. Saile, Pierre Jacob, Baptiste Castel, Lance M. Jubic, Isai Salas-Gonzáles, Marcel Bäcker, Jonathan D. G. Jones, Jeffery L. Dangl, Farid El Kasmi
Software Mentions: 3
Published: almost 6 years ago

10.1534/g3.119.400361

TNF-α Differentially Regulates Cell Cycle Genes in Promyelocytic and Granulocytic HL-60/S4 Cells
Cited by: 3
Author(s): Elsie C. Jacobson, Lekha Jain, Mark H. Vickers, Ada L. Olins, Donald E. Olins, Jo K. Perry, Justin M. O’Sullivan
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.656042

Identification of Potential Signatures and Their Functions for Acute Lymphoblastic Leukemia: A Study Based on the Cancer Genome Atlas
Cited by: 10
Author(s): Weimin Wang, Chunhui Lyu, Fei Wang, Congcong Wang, Feifei Wu, Xue Li, Si-Lin Gan
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13112705

CALD1 Modulates Gliomas Progression via Facilitating Tumor Angiogenesis
Cited by: 11
Author(s): Quan Cheng, Anliu Tang, Zeyu Wang, Ning Fang, Zhuojing Zhang, Jintao Zhang, Chuntao Li, Yu Zeng
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.00816

Identification and Validation of Key Genes Associated With Systemic Sclerosis-Related Pulmonary Hypertension
Cited by: 21
Author(s): Ji-Na Zheng, Yang Li, Yue-Mei Yan, Hui Shi, Tiantian Zou, Wenqi Shao, Qiang Wang
Software Mentions: 3
Published: about 6 years ago

10.1002/cam4.2113

Dissecting intratumoral myeloid cell plasticity by single cell RNA‐seq
Cited by: 89
Author(s): Qisheng Song, Gregory A. Hawkins, L. James Wudel, Ping-Chieh Chou, M. Elizabeth Forbes, Ashok Pullikuth, Liang Liu, Guangxu Jin, Lou Craddock, Ümit Topaloğlu, Gregory L. Kucera, Stacey S. O’Neill, Edward A. Levine, Peiqing Sun, Kounosuke Watabe, Yong Lu, Martha A. Alexander-Miller, Boris Pasche, Lance D. Miller, Wei Zhang
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.27506

Inducible knock-out of BCL6 in lymphoma cells results in tumor stasis
Cited by: 21
Author(s): Stefanie Schlager, Carina Salomon, Sabine Olt, Christoph Albrecht, Anja Ebert, Oliver Bergner, Johannes Wachter, Francesca Trapani, Daniel Gerlach, Tilman Voss, Anna K. Traunbauer, Julian Jude, Matthias Hinterndorfer, Martina Minnich, Norbert Schweifer, Sophia M. Blake, Vittoria Zinzalla, Barbara Drobits, Darryl B. McConnell, Norbert Kraut, Mark Pearson, Johannes Zuber, Manfred Koegl
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2019.00419

Expression Profile Analysis Identifies a Novel Five-Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 42
Author(s): Yin Wu, Guihua Tang, Quanwei Zhou, Yudong Cao, Haixia Li, Xianyong Fu, Zhaoping Wu, Xingjun Jiang
Software Mentions: 3
Published: over 7 years ago

10.3390/genes8100268

Low-Grade Dysplastic Nodules Revealed as the Tipping Point during Multistep Hepatocarcinogenesis by Dynamic Network Biomarkers
Cited by: 10
Author(s): Lina Lu, Zhenfei Jiang, Yulin Dai, Luonan Chen
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12906-021-03215-3

A network pharmacology perspective for deciphering potential mechanisms of action of Solanum nigrum L. in bladder cancer
Cited by: 17
Author(s): Yun Dong, Lin Hao, Kun Fang, Xing Han, Hui Yu, Jianjun Zhang, Longjun Cai, Tao Fan, Wen-da Zhang, Kun Pang, Weiming Ma, Xitao Wang, Conghui Han
Software Mentions: 3
Published: over 5 years ago

10.14814/phy2.14940

Transcriptomic analysis of cardiac gene expression across the life course in male and female mice
Cited by: 6
Author(s): Aykhan Yusifov, Vikram E. Chhatre, Eva K. Koplin, Cortney E. Wilson, Emily E. Schmitt, Kathleen C. Woulfe, Danielle R. Bruns
Software Mentions: 3
Published: about 5 years ago

10.1002/cam4.2468

Comprehensive analysis of five long noncoding RNAs expression as competing endogenous RNAs in regulating hepatoma carcinoma
Cited by: 13
Author(s): Xin Lou, Jun Li, Yu Dong, Yaqing Wei, Feng Shan, Jinjin Sun
Software Mentions: 3
Published: about 7 years ago

10.3390/genes10100795

Identification of Long Non-Coding RNA-Associated Competing Endogenous RNA Network in the Differentiation of Chicken Preadipocytes
Cited by: 21
Author(s): Lan Chen, Tao Zhang, Shanshan Zhang, Jen‐Wei Huang, Genxi Zhang, Kaizhou Xie, Jinyu Wang, Haiqing Wang, Guojun Dai
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2021.574196

Identification of the Functions and Prognostic Values of RNA Binding Proteins in Bladder Cancer
Cited by: 18
Author(s): Yue Wu, Zheng Liu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Shaogang Wang, Jihong Liu, Tao Wang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12935-021-01901-3

Construction of a long noncoding RNA-based competing endogenous RNA network and prognostic signatures of left- and right-side colon cancer
Cited by: 2
Author(s): Kezhi Li, Yuqing Yin, Yanping Tang, Long Long, Min Xie, Jilin Li, Ke Ding, Bang-li Hu
Software Mentions: 3
Published: over 5 years ago