10.1093/database/bay011

BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology
Cited by: 23
Author(s): Kleanthi Lakiotaki, Nikolaos Vorniotakis, Michail Tsagris, Γεώργιος Γεωργακόπουλος, Ioannis Tsamardinos
Software Mentions: 3
Published: over 8 years ago

10.1038/s41398-020-0777-y

Further confirmation of netrin 1 receptor (DCC) as a depression risk gene via integrations of multi-omics data
Cited by: 23
Author(s): Huijuan Li, Na Qu, Hui Li, Xin Cai, Chuyi Zhang, Bao‐Liang Zhong, Shufang Zhang, Jing Chen, Bin Xia, Lu Wang, Qi Jia, Wei Li, Hong Chang, Xiao Xiao, Ming Li, Yi Li
Software Mentions: 3
Published: over 6 years ago

10.1042/BSR20204062

Exploring the mechanism of aidi injection for lung cancer by network pharmacology approach and molecular docking validation
Cited by: 4
Author(s): Zhenjie Zhuang, Tong Lin, Lixia Luo, Weixin Zhou, Junping Wen, Huayi Huang, Zhanhua Liu, Lizhu Lin
Software Mentions: 3
Published: over 5 years ago

10.1042/BSR20202870

Identification of a thirteen-gene signature predicting overall survival for hepatocellular carcinoma
Cited by: 3
Author(s): Xiaohan Zhou, Chengdong Liu, Hanyi Zeng, De‐Hua Wu, Li Liu
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.103698

A two-gene-based prognostic signature for pancreatic cancer
Cited by: 8
Author(s): Shengqian Zhou, Yuanliang Yan, Xi Chen, Shuangshuang Zeng, Jie Wei, Xiang Wang, Zhicheng Gong, Zhijie Xu
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0225466

HeLa-CCL2 cell heterogeneity studied by single-cell DNA and RNA sequencing
Cited by: 15
Author(s): Waner Hu, Xin Zhang, Qiufang Guo, Jingwei Yang, Yuan Yang, Shicheng Wei, Xiao‐Dong Su
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2020.02039

Crosstalk Between the MSI Status and Tumor Microenvironment in Colorectal Cancer
Cited by: 160
Author(s): Anqi Lin, Jian Zhang, Peng Luo
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.102804

The IL1β-HER2-CLDN18/CLDN4 axis mediates lung barrier damage in ARDS
Cited by: 9
Author(s): Xiaochun Ma, Xin Yu, Qi Zhou
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-021-07894-7

Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae
Cited by: 4
Author(s): Shi‐Mei Huo, Zhichao Yan, Na Zhang, Lei Chen, Jing‐Tao Sun, Ary A. Hoffmann, Xiao‐Yue Hong
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.747020

Integrated Analysis of Prognostic Genes Associated With Ischemia–Reperfusion Injury in Renal Transplantation
Cited by: 5
Author(s): Di Zhang, Yicun Wang, Song Zeng, Min Zhang, Xin Zhang, Yuxuan Wang, Zijian Zhang, Xi Wang, Xiaosong Hu
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.ijpddr.2018.03.006

The anti-fecundity effect of 5-azacytidine (5-AzaC) on Schistosoma mansoni is linked to dis-regulated transcription, translation and stem cell activities
Cited by: 18
Author(s): Kathrin K. Geyer, Sabrina E. Munshi, Martin Vickers, Michael Squance, Toby Wilkinson, Daniel Berrar, Cristian Chaparro, Martin Swain, Karl F. Hoffmann
Software Mentions: 3
Published: about 8 years ago

10.1042/BSR20200514

Identification of co-expressed genes associated with <i>MLL</i> rearrangement in pediatric acute lymphoblastic leukemia
Cited by: 2
Author(s): Hao Zhang, Bei Liu, Juan Cheng, Haizhen Ma, Zijian Li, Yuandi Xi
Software Mentions: 3
Published: over 6 years ago

10.1186/s12957-021-02354-8

N6-methyladenosine (m6A) RNA methylation regulator SNRPC is a prognostic biomarker and is correlated with immunotherapy in hepatocellular carcinoma
Cited by: 9
Author(s): Jihao Cai, Minglei Zhou, Jian‐Xin Xu
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmed.2021.667525

FABP5, a Novel Immune-Related mRNA Prognostic Marker and a Target of Immunotherapy for Multiple Myeloma
Cited by: 7
Author(s): Haipeng Jia, Xiaofen Zhang, Xinxin Liu, Ruifang Qiao, Yan Liu, Sulong Lv, Hongbo Zhu, Jie Wang, Qiuhong Kong, Hong Zhang, Zhirong Zhang
Software Mentions: 3
Published: about 5 years ago

10.1080/22221751.2020.1747363

Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients
Cited by: 928
Author(s): Yong Xiong, Yuan Liu, Liu Cao, Dehe Wang, Ming Guo, Ao Jiang, Dong Guo, Wenjia Hu, Jiayi Yang, Zhidong Tang, Honglong Wu, Yan Lin, Meiyuan Zhang, Qi Zhang, Mǎng Shī, Yingle Liu, Yu Zhou, Ke Lan, Yu Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fmed.2021.667543

m6A RNA Methylation Regulator YTHDF1 Correlated With Immune Microenvironment Predicts Clinical Outcomes and Therapeutic Efficacy in Breast Cancer
Cited by: 10
Author(s): Ying Hu, Qinwen Pan, Minghao Wang, Xiang Ai, Yuzhao Yan, Yuan Tian, Yuting Jing, Peng Tang, Jun Jiang
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20200790

Identification of feature autophagy-related genes in patients with acute myocardial infarction based on bioinformatics analyses
Cited by: 4
Author(s): Yajuan Du, Enfa Zhao, Yushun Zhang
Software Mentions: 3
Published: about 6 years ago

10.3389/fcell.2021.718638

Identification of ARHGEF38, NETO2, GOLM1, and SAPCD2 Associated With Prostate Cancer Progression by Bioinformatic Analysis and Experimental Validation
Cited by: 8
Author(s): Zhuolun Sun, Yunfei Mao, Xu Zhang, Shuo Lu, Hua Wang, Chi Zhang, Chutian Xiao, Yinghao Cao, Yunhao Qing, Yu Wang, Ké Li
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmed.2020.581082

Anesthesia-Sepsis-Associated Alterations in Liver Gene Expression Profiles and Mitochondrial Oxidative Phosphorylation Complexes
Cited by: 6
Author(s): Hari Prasad Osuru, Umadevi Paila, Keita Ikeda, Zhiyi Zuo, Robert H. Thiele
Software Mentions: 3
Published: over 5 years ago

10.3389/fmed.2021.620988

Clonal Evolution Dynamics in Primary and Metastatic Lesions of Pancreatic Neuroendocrine Neoplasms
Cited by: 3
Author(s): Zhou Tong, Lin Wang, Weiwei Shi, Yanwu Zeng, Hangyu Zhang, Lulu Liu, Yi Zheng, Chunlei Chen, Weiliang Xia, Weijia Fang, Peng Zhao
Software Mentions: 3
Published: over 5 years ago

10.1016/j.dib.2020.106671

Dataset for transcriptome and physiological response of mature tomato seed tissues to light and heat during fruit ripening
Cited by: 1
Author(s): Elise Bizouerne, Benoît Ly Vu, Joseph Ly Vu, Jérôme Verdier, Julia Buitink, Olivier Leprince
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102169

Analysis of transcription factor- and ncRNA-mediated potential pathogenic gene modules in Alzheimer’s disease
Cited by: 13
Author(s): Cuihua Zou, Jie Wang, Xiaohua Huang, Chongdong Jian, Donghua Zou, Xuebin Li
Software Mentions: 3
Published: almost 7 years ago

10.15252/emmm.201910919

Active poly‐GA vaccination prevents microglia activation and motor deficits in a <i>C9orf72</i> mouse model
Cited by: 35
Author(s): Qihui Zhou, Nikola Mareljic, Meike Michaelsen, Samira Parhizkar, Steffanie Heindl, Brigitte Nuscher, Daniel Farny, Mareike Czuppa, Carina Schludi, Alexander Graf, Stefan Krebs, Helmut Blum, Regina Feederle, Stefan Roth, Christian Haass, Thomas Arzberger, Arthur Liesz, Dieter Edbauer
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-018-5217-5

Dissecting clinical outcome of porcine circovirus type 2 with in vivo derived transcriptomic signatures of host tissue responses
Cited by: 4
Author(s): Nicolaas Van Renne, Ruifang Wei, Nathalie Pochet, Hans Nauwynck
Software Mentions: 3
Published: over 7 years ago

10.34133/2020/1969142

Hierarchical Canonical Correlation Analysis Reveals Phenotype, Genotype, and Geoclimate Associations in Plants
Cited by: 1
Author(s): Raphael Petegrosso, Tianci Song, Rui Kuang
Software Mentions: 3
Published: over 6 years ago

10.1007/s12250-021-00370-2

Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway
Cited by: 13
Author(s): Miao Wang, Liying Wang, Haizhou Liu, Jianjun Chen, Di Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.02514

Cell-Wall-Degrading Enzymes Required for Virulence in the Host Selective Toxin-Producing Necrotroph Alternaria alternata of Citrus
Cited by: 46
Author(s): Hongshen Ma, Bin Zhang, Yunpeng Gai, Xuepeng Sun, Kuang‐Ren Chung, Hongye Li
Software Mentions: 3
Published: over 6 years ago

10.1186/s13567-020-00850-5

Integrated time-serial transcriptome networks reveal common innate and tissue-specific adaptive immune responses to PRRSV infection
Cited by: 18
Author(s): Bee-Oh Lim, Sang–Wook Kim, kyu sang lim, Chang Gi Jeong, Seung Chai Kim, Sang Myeong Lee, Choi Kyu Park, M.F.W. te Pas, Haesu Gho, Tae Hun Kim, Kyung Tai Lee, Won Il Kim, Jun Mo Kim
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41398-021-01565-7

Intrauterine hyperglycemia impairs memory across two generations
Cited by: 9
Author(s): Kexin Zou, Jun Ren, Shuai Luo, Junyu Zhang, Chuanpeng Zhou, Chengxi Tan, Peng Lv, Xiao Sun, Jian‐Zhong Sheng, Xinmei Liu, He‐Feng Huang, Guo‐Lian Ding
Software Mentions: 3
Published: almost 5 years ago

10.7150/jca.38741

Construction and validation of an eight-gene signature with great prognostic value in bladder cancer
Cited by: 13
Author(s): Xin Yan, Xun Fu, Zixin Guo, Xiaoping Li, Tong-Zu Liu, Sheng Li
Software Mentions: 3
Published: over 6 years ago

10.1186/s40104-020-00494-7

Identification of novel molecular markers of mastitis caused by Staphylococcus aureus using gene expression profiling in two consecutive generations of Chinese Holstein dairy cattle
Cited by: 26
Author(s): Di Wang, Lei Liu, Serafino M. A. Augustino, Tao Duan, Thomas J. Hall, David E. MacHugh, Junling Dou, Yi Zhang, Yachun Wang, Ying Yu
Software Mentions: 3
Published: almost 6 years ago

10.1093/dnares/dsy044

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1—a comparative genomics viewpoint
Cited by: 24
Author(s): Diya Sen, Karnelia Paul, Chinmay Saha, G. N. Mukherjee, Mayurakshi Nag, Samrat Ghosh, A. K. Das, A. Seal, Sucheta Tripathy
Software Mentions: 3
Published: over 7 years ago

10.3389/fcvm.2020.597932

Expression Profiles of Circular RNA in Human Atrial Fibrillation With Valvular Heart Diseases
Cited by: 13
Author(s): Xiyu Zhu, Xingming Tang, Hoshun Chong, Hailong Cao, Fudong Fan, Jun Pan, Dongjin Wang, Qing Zhou
Software Mentions: 3
Published: over 5 years ago

10.15252/msb.20199167

Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states
Cited by: 16
Author(s): Siyu Sun, Anastasia Baryshnikova, Nathan Brandt, David Gresham
Software Mentions: 3
Published: over 6 years ago

10.1155/2021/9991255

Identification of 5 Hub Genes Related to the Early Diagnosis, Tumour Stage, and Poor Outcomes of Hepatitis B Virus-Related Hepatocellular Carcinoma by Bioinformatics Analysis
Cited by: 13
Author(s): Rui Qiang, Zitong Zhao, Lu Tang, Qian Wang, Yanhong Wang, Qian Huang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2019.01498

Interaction-Specific Changes in the Transcriptome of Polynucleobacter asymbioticus Caused by Varying Protistan Communities
Cited by: 5
Author(s): Daniela Beißer, Christina Böck, Martin W. Hahn, Matthijs Vos, Bernd Sures, Sven Rahmann, Jens Boenigk
Software Mentions: 3
Published: about 7 years ago

10.1172/jci.insight.146098

SLFN11 captures cancer-immunity interactions associated with platinum sensitivity in high-grade serous ovarian cancer
Cited by: 9
Author(s): C Winkler, Matthew King, Julie Berthe, Domenico Ferraioli, Anna Garuti, Federica Grillo, Jaime Rodriguez‐Canales, Lorenzo Ferrando, Nicolás Chopin, Isabelle Ray‐Coquard, Oona Delpuech, Davide Bedognetti, Alberto Ballestrero, Elisabetta Leo, Gabriele Zoppoli
Software Mentions: 3
Published: almost 5 years ago

10.3389/fcell.2021.739358

Macrophage-Related SPP1 as a Potential Biomarker for Early Lymph Node Metastasis in Lung Adenocarcinoma
Cited by: 22
Author(s): Bo Dong, Chunli Wu, Lan Huang, Yu Qi
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0255660

Effect of food source availability in the salivary gland transcriptome of the unique burying beetle Nicrophorus pustulatus (Coleoptera: Silphidae)
Cited by: 0
Author(s): Christian Ayala-Ortiz, Jacob W. Farriester, Carrie J Pratt, Anna K Goldkamp, Jessica Matts, W. Wyatt Hoback, John E. Gustafson, Darren E. Hagen
Software Mentions: 3
Published: almost 5 years ago

10.1155/2020/4574792

Functional Modular Network Identifies the Key Genes of Preoperative Inhalation Anesthesia and Intravenous Anesthesia in Off-Pump Coronary Artery Bypass Grafting
Cited by: 3
Author(s): Hongfei Zhao, Weitian Wang, Liping Liu, Junlong Wang, Quanzhang Yan
Software Mentions: 3
Published: almost 6 years ago

10.14814/phy2.14940

Transcriptomic analysis of cardiac gene expression across the life course in male and female mice
Cited by: 6
Author(s): Aykhan Yusifov, Vikram E. Chhatre, Eva K. Koplin, Cortney E. Wilson, Emily E. Schmitt, Kathleen C. Woulfe, Danielle R. Bruns
Software Mentions: 3
Published: about 5 years ago

10.1155/2021/6685282

Zi Shen Decoction Inhibits Growth and Metastasis of Lung Cancer via Regulating the AKT/GSK-3β/β-Catenin Pathway
Cited by: 6
Author(s): Yanxia Ma, Yu Liu, Linxin Teng, En Luo, Dekang Liu, Fuqiong Zhou, Kaiyuan Wang, Weiping Chen, Lei Bi
Software Mentions: 3
Published: over 5 years ago

10.3390/biom11060843

Nucleoside Analogues Are Potent Inducers of Pol V-mediated Mutagenesis
Cited by: 2
Author(s): Balagra Kasim Sumabe, Synnøve Brandt Ræder, Lisa Marie Røst, Animesh Sharma, Eric S Donkor, Lydia Mosi, Samuel Duodu, Per Bruheim, Marit Otterlei
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-021-07683-2

A comprehensive RNA-Seq-based gene expression atlas of the summer squash (Cucurbita pepo) provides insights into fruit morphology and ripening mechanisms
Cited by: 11
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Belén Picó, Panagiotis Boumpas, Eleni Tsaliki, Harry S. Paris, Athanasios Tsaftaris, Apostolos Kalivas, Ιfigeneia Mellidou, Ioannis Ganopoulos
Software Mentions: 3
Published: about 5 years ago

10.1172/jci.insight.137427

Comprehensive plasma proteomic profiling reveals biomarkers for active tuberculosis
Cited by: 31
Author(s): Diana J. Garay‐Baquero, Cory H. White, Naomi F. Walker, Marc Tebruegge, Hannah F. Schiff, César Ugarte-Gil, Stephen Morris-Jones, Ben G. Marshall, Antigoni Manousopoulou, John Adamson, Andrés F. Vallejo, Magdalena K. Bielecka, Robert J. Wilkinson, Liku B. Tezera, Christopher H. Woelk, Spiros D. Garbis, Paul Elkington
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/8836493

Identification of Prognostic Biomarkers of Cutaneous Melanoma Based on Analysis of Tumor Mutation Burden
Cited by: 4
Author(s): Jiaqiong Lin, Ye Lin, Zhemin Huang, Xiaoyong Li
Software Mentions: 3
Published: over 5 years ago

10.1136/jitc-2020-002115

MUC1-C integrates activation of the IFN-γ pathway with suppression of the tumor immune microenvironment in triple-negative breast cancer
Cited by: 35
Author(s): Nami Yamashita, Mark D. Long, Atsushi Fushimi, Masaaki Yamamoto, Tsuyoshi Hata, Masaru Hagiwara, Atrayee Bhattacharya, Qiang Hu, Kwok-Kin Wong, Song Liu, Donald Küfe
Software Mentions: 3
Published: over 5 years ago

10.3389/fmolb.2020.565173

IGFLR1 as a Novel Prognostic Biomarker in Clear Cell Renal Cell Cancer Correlating With Immune Infiltrates
Cited by: 8
Author(s): Wenjing Song, You-Cheng Shao, Xin He, Peng Gong, Yan Yang, Shu‐Chun Huang, Yifan Zeng, Lei Wei, Jingwei Zhang
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102178

Prognostic value of genome-wide DNA methylation patterns in noncoding miRNAs and lncRNAs in uveal melanomas
Cited by: 1
Author(s): Zheng Zhang, Dan Xu, Ke–Qing Shi, Minfeng Chen, Fan Liu
Software Mentions: 3
Published: almost 7 years ago

10.1172/jci.insight.136477

Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs
Cited by: 10
Author(s): Xiaofeng Chen, Mingrui Guo, Yuanyuan Duan, Feng Jiang, Hao Wu, Shanshan Dong, Xiaorong Zhou, Hlaing Nwe Thynn, C.C. Liu, Lin Zhang, Yan Guo, Tie‐Lin Yang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/6943103

Comprehensive Bioinformatics Analysis Reveals Hub Genes and Inflammation State of Rheumatoid Arthritis
Cited by: 21
Author(s): Conglin Ren, Mingshuang Li, Weibin Du, Jianlan Lü, Yang Zheng, Haipeng Xu, Renfu Quan
Software Mentions: 3
Published: about 6 years ago

10.3390/insects12090809

Solitary Living Brings a Decreased Weight and an Increased Agility to the Domestic Silkworm, Bombyx mori
Cited by: 2
Author(s): Zhenglin Zhu, Yuting Tan, Siyu Xiao, Zhufen Guan, Wen Zhao, Zhijun Dai, Gexin Liu, Ze Zhang
Software Mentions: 3
Published: almost 5 years ago

10.18632/aging.103974

Comprehensive analysis of cancer hallmarks in cutaneous melanoma and identification of a novel unfolded protein response as a prognostic signature
Cited by: 7
Author(s): Qi Wan, Lin Jin, Zhichong Wang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2019/6534745

A Systematic View Exploring the Role of Chloroplasts in Plant Abiotic Stress Responses
Cited by: 12
Author(s): Yo-Han Yoo, Woo‐Jong Hong, Ki‐Hong Jung
Software Mentions: 3
Published: about 7 years ago

10.1186/s13027-021-00357-4

Identification of key genes in hepatitis B associated hepatocellular carcinoma based on WGCNA
Cited by: 6
Author(s): Chang Liu, Qinghai Dai, Qian Ding, Min Wei, Xiaohong Kong
Software Mentions: 3
Published: over 5 years ago

10.3389/fmolb.2021.645388

Mining TCGA Data for Key Biomarkers Related to Immune Microenvironment in Endometrial cancer by Immune Score and Weighted Correlation Network Analysis
Cited by: 18
Author(s): Chengbin Guo, Yuqin Tang, Yongqiang Zhang, Gen Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fmolb.2020.565383

The Significance of Secreted Phosphoprotein 1 in Multiple Human Cancers
Cited by: 26
Author(s): Tengteng Wei, Guoshu Bi, Yunyi Bian, Suhong Ruan, Guangda Yuan, Haifeng Xie, Mengnan Zhao, Rongming Shen, Yimeng Zhu, Qun Wang, Yong Yang, Donglin Zhu
Software Mentions: 3
Published: over 5 years ago

10.1016/j.molmet.2020.101066

Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1
Cited by: 7
Author(s): Serena Barilla, Ning Liang, Enrichetta Mileti, Raphaëlle Ballaire, Marie Lhomme, Maharajah Ponnaiah, Sophie Lemoine, Antoine Soprani, Jean‐François Gautier, Ez-Zoubir Amri, Wilfried Le Goff, Nicolas Venteclef, Eckardt Treuter
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/2496582

Profiles of PD-1, PD-L1, PD-L2 in Gastric Cancer and Their Relation with Mutation, Immune Infiltration, and Survival
Cited by: 7
Author(s): Jingwei Liu, Hao Li, Liping Sun, Yuan Yuan, Chengzhong Xing
Software Mentions: 3
Published: about 6 years ago

10.7150/thno.46460

Cisplatin prevents breast cancer metastasis through blocking early EMT and retards cancer growth together with paclitaxel
Cited by: 44
Author(s): Haitao Wang, Sen Guo, Seung Jin Kim, Fangyuan Shao, Joshua W. K. Ho, Kuan Un Wong, Zhengqiang Miao, Dapeng Hao, Ming Zhao, Jun Xu, Jianming Zeng, Koon Ho Wong, Lijun Di, Ada Hang Heng Wong, Xiaoling Xu, Chu Xia Deng
Software Mentions: 3
Published: over 5 years ago

10.1038/s41419-020-2483-3

A necroptotic-independent function of MLKL in regulating endothelial cell adhesion molecule expression
Cited by: 23
Author(s): Jialin Dai, Chonghe Zhang, Lin Guo, Hao He, Kai Jiang, Yingying Huang, Xixi Zhang, Haibing Zhang, Wei Wu, Yaoyang Zhang, Ling Lu, Junhao Hu
Software Mentions: 3
Published: over 6 years ago

10.1038/s42003-020-0827-2

Igf2bp3 maintains maternal RNA stability and ensures early embryo development in zebrafish
Cited by: 37
Author(s): Fan Ren, Qiaohong Lin, Gaorui Gong, Xian Du, Daojun Hong, Wenying Qin, Ran Miao, Yang Xiong, Rui Xiao, Xiaohui Li, Jian‐Fang Gui, Jie Mei
Software Mentions: 3
Published: over 6 years ago

10.3389/fmolb.2020.577460

Systematic Analyses of the Role of the Reader Protein of N6-Methyladenosine RNA Methylation, YTH Domain Family 2, in Liver Hepatocellular Carcinoma
Cited by: 20
Author(s): Xiangyang Shao, Jin Tang Dong, Han Zhang, Yanni Wu, Lei Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fmolb.2021.604261

LncRNA ST7-AS1 is a Potential Novel Biomarker and Correlated With Immune Infiltrates for Breast Cancer
Cited by: 8
Author(s): Ziwen Zhang, Han Zhang, Dongbo Li, Xiaoping Zhou, Jinlu Wang, Qingyuan Zhang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0241924

Identification of a 6-gene signature for the survival prediction of breast cancer patients based on integrated multi-omics data analysis
Cited by: 7
Author(s): Wenju Mo, Yuqin Ding, Shuai Zhao, Dayang Zou, Xiaowen Ding
Software Mentions: 3
Published: over 5 years ago

10.1155/2018/9415409

Time-Course Comparative Metabolite Profiling under Osmotic Stress in Tolerant and Sensitive Tibetan Hulless Barley
Cited by: 50
Author(s): Hongjun Yuan, Xingquan Zeng, Jian Shi, Qijun Xu, Yulin Wang, Dunzhu Jabu, Zha Sang, Nyima Tashi
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-020-07099-4

Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed
Cited by: 3
Author(s): Xi Liu, Frédéric Herault, Christian Diot, Erwan Corre
Software Mentions: 3
Published: almost 6 years ago

10.18632/aging.101496

Signatures of photo-aging and intrinsic aging in skin were revealed by transcriptome network analysis
Cited by: 25
Author(s): Byuri Angela Cho, Seong-Keun Yoo, Jong-Soo Seo
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-021-07576-4

Long non-coding RNA pairs to assist in diagnosing sepsis
Cited by: 18
Author(s): Xubin Zheng, Kwong‐Sak Leung, Man‐Hon Wong, Lixin Cheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fmolb.2021.691602

HTR2B and SLC5A3 Are Specific Markers in Age-Related Osteoarthritis and Involved in Apoptosis and Inflammation of Osteoarthritis Synovial Cells
Cited by: 6
Author(s): Xin Lu, Yu Fan, Mingxia Li, Xiao Chang, Jun Qian
Software Mentions: 3
Published: about 5 years ago

10.1186/s41065-021-00187-9

Identification of potential biomarkers for pathogenesis of Alzheimer’s disease
Cited by: 10
Author(s): Huimin Wang, Xiujiang Han, Sheng Gao
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2020.590770

Systemic Analysis of the Prognosis-Associated Alternative Polyadenylation Events in Breast Cancer
Cited by: 5
Author(s): Yi Zhang, Yuzhi Wang, Cheng‐Wen Li, Tianhua Jiang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2020/2071593

High Expression of UBB, RAC1, and ITGB1 Predicts Worse Prognosis among Nonsmoking Patients with Lung Adenocarcinoma through Bioinformatics Analysis
Cited by: 11
Author(s): Huan Deng, Yo-Ping Huang, Li Wang, Ming Chen
Software Mentions: 3
Published: almost 6 years ago

10.1155/2021/9960905

Identification of CD8+ T Cell-Related Genes: Correlations with Immune Phenotypes and Outcomes of Liver Cancer
Cited by: 6
Author(s): Qi Pan, Ying Cheng, Da‐Chuan Cheng
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.202714

High expression of CD52 in adipocytes: a potential therapeutic target for obesity with type 2 diabetes
Cited by: 3
Author(s): Rui Mao, Fan Yang, Yu Zhang, Hongtao Liu, Pengsen Guo, Yanjun Liu, Tongtong Zhang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3356-0

The influence of pro-longevity gene Gclc overexpression on the age-dependent changes in Drosophila transcriptome and biological functions
Cited by: 17
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Ekaterina Proshkina, А. С. Белый, Alexander Fedintsev, Svetlana Zhikrivetskaya, Zulfiya G. Guvatova, А. Ф. Садритдинова, А. В. Снежкина, George S. Krasnov, Anna V. Kudryavtseva
Software Mentions: 3
Published: over 9 years ago

10.1080/19490976.2021.1980347

<i>Fusobacterium nucleatum</i> promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization
Cited by: 69
Author(s): Chaochao Xu, Li Fan, Yaowang Lin, Weiyi Shen, Yadong Qi, Ying Zhang, Zhehang Chen, Lan Wang, Yan Long, Tongyao Hou, Jianmin Si, Shujie Chen
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.660576

Long Noncoding RNA lnc-TSSK2-8 Activates Canonical Wnt/β-Catenin Signaling Through Small Heat Shock Proteins HSPA6 and CRYAB
Cited by: 7
Author(s): Jingjing Fa, Xiaoqing Zhang, Xiaoping Zhang, Ming Qi, Xingyu Zhang, Qin Fu, Zhuoming Xu, Yun‐Qian Gao, Bo Wang
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/7573689

Identification of Three lncRNAs as Potential Predictive Biomarkers of Lung Adenocarcinoma
Cited by: 14
Author(s): Donghui Jin, Yuxuan Song, Yuan Chen, Peng Zhang
Software Mentions: 3
Published: over 6 years ago

10.1002/cti2.1108

CD163⁺ tumor‐associated macrophage accumulation in breast cancer patients reflects both local differentiation signals and systemic skewing of monocytes
Cited by: 39
Author(s): Rodrigo Nalio Ramos, Céline Rodriguez, Margaux Hubert, Maude Ardin, Isabelle Treilleux, Carola H. Ries, Emilie Lavergne, Sylvie Chabaud, Amélie Colombe, Olivier Trédan, Henrique Gomes Guedes, Fábio Martins Laginha, Wilfrid Richer, Eliane Piaggio, José Alexandre Marzagão Barbuto, Christophe Caux, Christine Ménétrier‐Caux, Nathalie Bendriss‐Vermare
Software Mentions: 3
Published: over 6 years ago

10.7150/thno.47001

LAMA4 upregulation is associated with high liver metastasis potential and poor survival outcome of Pancreatic Cancer
Cited by: 16
Author(s): Biao Zheng, Jianhua Qu, Kenoki Ohuchida, Haimin Feng, Siew Meng Chong, Zilong Yan, Yicui Piao, Peng Liu, Nan Sheng, Daiki Eguchi, Takao Ohtsuka, Kazuhiro Mizumoto, Zhong Liu, Shazib Pervaiz, Peng Gong, Masafumi Nakamura
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.615963

Identification of Genes Related to Immune Infiltration in the Tumor Microenvironment of Cutaneous Melanoma
Cited by: 10
Author(s): Rujia Qin, Wen Peng, Xuemin Wang, Chunyan Li, Yan Xi, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/1971284

Immune-Related lncRNA Risk Signatures Predict Survival of IDH Wild-Type and MGMT Promoter Unmethylated Glioblastoma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-021-07536-y

Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene
Cited by: 1
Author(s): Ran Di, Qiu Yue Liu, Shu Hui Song, Dong Tian, Jian He, Ying Ge, Xiang Yu Wang, Wen Hu, Joram M. Mwacharo, Zhang Yuan Pan, Jian Dong Wang, Qing Ma, G. L. Cao, Hui Jin, Liang Xiao, M. X. Chu
Software Mentions: 3
Published: over 5 years ago

10.1186/s13148-017-0381-z

Transcriptomics and methylomics in chronic periodontitis with tobacco use: a pilot study
Cited by: 21
Author(s): Young‐Dan Cho, Pil-Jong Kim, Hong-Gee Kim, Yang‐Jo Seol, Yong-Moo Lee, In‐Chul Rhyu, Hyun‐Mo Ryoo
Software Mentions: 3
Published: almost 9 years ago

10.3390/cancers13112705

CALD1 Modulates Gliomas Progression via Facilitating Tumor Angiogenesis
Cited by: 11
Author(s): Quan Cheng, Anliu Tang, Zeyu Wang, Ning Fang, Zhuojing Zhang, Jintao Zhang, Chuntao Li, Yu Zeng
Software Mentions: 3
Published: about 5 years ago

10.1038/s41419-021-04107-7

PPFIBP1 induces glioma cell migration and invasion through FAK/Src/JNK signaling pathway
Cited by: 16
Author(s): Caihua Dong, Xinying Li, Yang Jiao, Detian Yuan, Yuanshuai Zhou, Yina Zhang, Guohua Shi, Ruobing Zhang, Jianping Liu, Peng Fu, Minxuan Sun
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2020.00816

Identification and Validation of Key Genes Associated With Systemic Sclerosis-Related Pulmonary Hypertension
Cited by: 21
Author(s): Ji-Na Zheng, Yang Li, Yue-Mei Yan, Hui Shi, Tiantian Zou, Wenqi Shao, Qiang Wang
Software Mentions: 3
Published: about 6 years ago

10.3390/nu10121921

Clostridium butyricum MIYAIRI 588 Increases the Lifespan and Multiple-Stress Resistance of Caenorhabditis elegans
Cited by: 25
Author(s): Maiko Kato, Yoko Hamazaki, Simo Sun, Yoshikazu Nishikawa, Eriko Kage-Nakadai
Software Mentions: 3
Published: over 7 years ago

10.1016/j.molcel.2021.01.011

Neuronal non-CG methylation is an essential target for MeCP2 function
Cited by: 21
Author(s): Rebekah Tillotson, Justyna Cholewa-Waclaw, Kashyap Chhatbar, John C. Connelly, Sophie A. Kirschner, Shaun Webb, Martha V. Koerner, Jim Selfridge, David A. Kelly, Dina De Sousa, Kyla Brown, Matthew J. Lyst, Skirmantas Kriaucionis, Adrian Bird
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.577072

Immune Microenvironment Related Competitive Endogenous RNA Network as Powerful Predictors for Melanoma Prognosis Based on WGCNA Analysis
Cited by: 20
Author(s): Yuanrong Cheng, Chengxiu Liu, Yurun Liu, Yangfeng Su, Shoubi Wang, Lin Jin, Qi Wan, Ying Liu, Chaoyang Li, Xuan Sang, Yang Liu, Chang Liu, Xiaoran Wang, Zhichong Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2019.00613

Identification of Biomarkers for Controlling Cancer Stem Cell Characteristics in Bladder Cancer by Network Analysis of Transcriptome Data Stemness Indices
Cited by: 92
Author(s): Shen Pan, Yunhong Zhan, Xiaonan Chen, Bin Wu, Bitian Liu
Software Mentions: 3
Published: about 7 years ago

10.1002/advs.202100363

Calcium–Collagen Coupling is Vital for Biomineralization Schedule
Cited by: 7
Author(s): Jinglun Zhang, Yaoting Ji, Shuting Jiang, Miusi Shi, Wenjin Cai, Richard J. Miron, Yufeng Zhang
Software Mentions: 3
Published: about 5 years ago

10.1155/2020/7947208

Clinical Features and Prognostic Impact of Coexpression Modules Constructed by WGCNA for Diffuse Large B-Cell Lymphoma
Cited by: 4
Author(s): Jie Xiao, Xuemei Wang, Hao Bai
Software Mentions: 3
Published: about 6 years ago

10.1155/2021/9991726

Identification of Vital Hub Genes and Potential Molecular Pathways of Dermatomyositis by Bioinformatics Analysis
Cited by: 3
Author(s): Xueren Ouyang, Yuning Zeng, Xiaotao Jiang, Haowen Xu, Yile Ning
Software Mentions: 3
Published: almost 5 years ago

10.1093/gigascience/giaa006

Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis
Cited by: 28
Author(s): Delu Ning, Wu Tao, Xiao Liang-jun, Ting Ma, Wen‐Liang Fang, Dong Run-quan, Fuliang Cao
Software Mentions: 3
Published: over 6 years ago

10.1186/s40478-018-0584-3

Unique microglia recovery population revealed by single-cell RNAseq following neurodegeneration
Cited by: 64
Author(s): Tuan Leng Tay, Sagar, Jana Dautzenberg, Dominic Grün, Marco Prinz
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13073-019-0636-8

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma
Cited by: 92
Author(s): Markus Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Rieß, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velić, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, Hans‐Georg Rammensee
Software Mentions: 3
Published: over 7 years ago

10.1155/2020/2340124

Novel Discoveries Targeting Pathogenic Gut Microbes and New Therapies in Pancreatic Cancer: Does Pathogenic E. coli Infection Cause Pancreatic Cancer Progression Modulated by TUBB/Rho/ROCK Signaling Pathway? A Bioinformatic Analysis
Cited by: 7
Author(s): Wenhao Luo, Zhe Cao, Jiangdong Qiu, Yueze Liu, Lianfang Zheng, Taiping Zhang
Software Mentions: 3
Published: about 6 years ago

10.1155/2019/2408348

Mining TCGA Database for Tumor Microenvironment-Related Genes of Prognostic Value in Hepatocellular Carcinoma
Cited by: 30
Author(s): Zhenfeng Deng, Jilong Wang, Banghao Xu, Zongrui Jin, Guolin Wu, Jingjing Zeng, Minhao Peng, Ya Guo, Wen Zhang
Software Mentions: 3
Published: over 6 years ago