bioconductor: clusterProfiler | Projects

10.3389/fgene.2018.00412

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response
Cited by: 14
Author(s): Janet Piñero, Abel González-Pérez, Emre Güney, Joaquim Aguirre‐Plans, Ferrán Sanz, Baldo Oliva, Laura I. Furlong
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.599261

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Cited by: 53
Author(s): Komudi Singh, Yunching Chen, Shakiba Hassanzadeh, Han Kim, Jennifer Judy, Fayaz Seifuddin, Ilker Tunc, Michael N. Sack, Mehdi Pirooznia
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.680369

Identification of MX2 as a Novel Prognostic Biomarker for Sunitinib Resistance in Clear Cell Renal Cell Carcinoma
Cited by: 27
Author(s): Yuang Wei, Xinglin Chen, Xiaohan Ren, Bao Wang, Qian Zhang, Hengtao Bu, Ji Qian, Pengfei Shao
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.584624

Development and Validation of an RNA-Binding Protein-Based Prognostic Model for Ovarian Serous Cystadenocarcinoma
Cited by: 1
Author(s): Yunan He, Sen Zeng, Shunjie Hu, Fengqian Zhang, Nianchun Shan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2020.566918

Transcriptomic Analysis of Glycolysis-Related Genes Reveals an Independent Signature of Bladder Carcinoma
Cited by: 3
Author(s): Zezhong Mou, Chen Yang, Zheyu Zhang, Siqi Wu, Chenyang Xu, Cheng Zhang, Xiaoming Dai, Xinan Chen, Yuxi Ou, Haowen Jiang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2020.605623

Long Non-coding RNA BTG3-7:1 and JUND Co-regulate C21ORF91 to Promote Triple-Negative Breast Cancer Progress
Cited by: 0
Author(s): Dan Zheng, Xiujing He, Ting Luo, Xiaorong Zhong, Hong Zheng, Jiqiao Yang, Yanchu Li, Jing Jing
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2018.00375

L-Lactate Regulates the Expression of Synaptic Plasticity and Neuroprotection Genes in Cortical Neurons: A Transcriptome Analysis
Cited by: 57
Author(s): Michael B. Margineanu, Hanan Mahmood, Hubert Fiumelli, Pierre J. Magistretti
Software Mentions: 4
Published: almost 8 years ago

10.3389/fnmol.2021.624881

Identification of Natural Antisense Transcripts in Mouse Brain and Their Association With Autism Spectrum Disorder Risk Genes
Cited by: 0
Author(s): Baran Koç, Geoffrey Fucile, Roland Schmucki, Nicolas Giroud, Tobias Bergauer, Benjamin J. Hall
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2021.639145

Post-stroke Delivery of Valproic Acid Promotes Functional Recovery and Differentially Modifies Responses of Peri-Infarct Microglia
Cited by: 6
Author(s): Tung‐Tai Kuo, Vicki Wang, Jui-Sheng Wu, Yuan-Hao Chen, Kuan-Yin Tseng
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2021.691631

Hippocampal Transcriptome Changes After Subarachnoid Hemorrhage in Mice
Cited by: 4
Author(s): Angelique Regnier-Golanov, Friederike Dündar, Paul Zumbo, Doron Betel, Magda S Hernandez, Leif E. Peterson, Eng H. Lo, Eugene V. Golanov, Gavin W. Britz
Software Mentions: 4
Published: about 5 years ago

10.3389/fnins.2021.605654

Alteration of N6 -Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia–Reperfusion Injury
Cited by: 34
Author(s): Dazhuang Yi, Qunhui Wang, Yuhao Zhao, Shuhui Yu, Hong You, Jian Wang, Renjie Liu, Shi Zhong-qiang, Xuan Chen, Qi Luo
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2020.562292

Human iPSC-Derived Neuronal Cells From CTBP1-Mutated Patients Reveal Altered Expression of Neurodevelopmental Gene Networks
Cited by: 5
Author(s): S. Vijayalingam, Uthayashanker R. Ezekiel, Fenglian Xu, T. Subramanian, Elizabeth Geerling, Brittany Hoelscher, KayKay San, Aravinda Ganapathy, Kyle Pemberton, Eric Tycksen, Amelia K. Pinto, James D. Brien, David B. Beck, Wendy K. Chung, Christina A. Gurnett, G. Chinnadurai
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2019.01181

Circular RNA-Associated Competing Endogenous RNA Network and Prognostic Nomogram for Patients With Colorectal Cancer
Cited by: 42
Author(s): Wei Song, Tao Fu
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.614497

Molecular and Clinical Characterization of CCT2 Expression and Prognosis via Large-Scale Transcriptome Profile of Breast Cancer
Cited by: 6
Author(s): Qiang Liu, Yihang Qi, Xiangyi Kong, Xiangyu Wang, Wenxiang Zhang, Jie Zhai, Yazhe Yang, Yi Fang, Jing Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.636461

Identification of Early Diagnostic and Prognostic Biomarkers via WGCNA in Stomach Adenocarcinoma
Cited by: 21
Author(s): Ruoyue Tan, Guanghui Zhang, Ruochen Liu, Jingyao Hou, Zhen Dong, Chaowei Deng, Sicheng Wan, Xiaodong Liu, Hongjuan Cui
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.744951

The Landscape of Immune Cells Indicates Prognosis and Applicability of Checkpoint Therapy in Hepatocellular Carcinoma
Cited by: 7
Author(s): Jiacheng Huang, Lele Zhang, Jianxiang Chen, Dalong Wan, Lin Zhou, Shusen Zheng, Yiting Qiao
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.615976

Identification of Core Genes and Screening of Potential Targets in Glioblastoma Multiforme by Integrated Bioinformatic Analysis
Cited by: 12
Author(s): Jian Yang, Qian Yang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2019.00712

Prognostic lncRNAs, miRNAs, and mRNAs Form a Competing Endogenous RNA Network in Colon Cancer
Cited by: 33
Author(s): Qianrong Huang, Xin-Bin Pan
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2020.628608

Upregulation of Long Non-Coding RNA GCC2-AS1 Facilitates Malignant Phenotypes and Correlated With Unfavorable Prognosis for Lung Adenocarcinoma
Cited by: 6
Author(s): Fengqiang Yu, Mingqiang Liang, Weidong Wu, Yu Huang, Juanjuan Zheng, Bin Zheng, Chun Chen
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.714267

M6A Classification Combined With Tumor Microenvironment Immune Characteristics Analysis of Bladder Cancer
Cited by: 12
Author(s): Huili Zhu, Xiaocan Jia, Yuping Wang, Zhijuan Song, Nana Wang, Yongli Yang, Xiaoguang Shi
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00707

Construction and Validation of an Autophagy-Related Prognostic Risk Signature for Survival Predicting in Clear Cell Renal Cell Carcinoma Patients
Cited by: 12
Author(s): Huiying Yang, Mengjiao Han, Hua Li
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.624752

Down-Regulation of Long Non-Coding RNA TINCR Induces Cell Dedifferentiation and Predicts Progression in Oral Squamous Cell Carcinoma
Cited by: 6
Author(s): Zerui Zhuang, Jing Huang, Weiwang Wang, Cheng Wang, Pei Yu, Jing Hu, Haichao Liu, Hanqi Yin, Jinsong Hou, Xiqiang Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.567931

A Ten-N6-Methyladenosine (m6A)-Modified Gene Signature Based on a Risk Score System Predicts Patient Prognosis in Rectum Adenocarcinoma
Cited by: 10
Author(s): Wei Huang, Gen Li, Zihang Wang, Lin Zhou, Xin Yin, Tianshu Yang, Pei Wang, Xu Teng, Yajuan Feng, Hefen Yu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: over 6 years ago

10.3390/genes11030345

Arabidopsis thaliana MLK3, a Plant-Specific Casein Kinase 1, Negatively Regulates Flowering and Phosphorylates Histone H3 In Vitro
Cited by: 12
Author(s): Junmei Kang, Huiting Cui, Shangang Jia, Wenwen Liu, Renjie Yu, Zhihai Wu, Zhen Wang
Software Mentions: 4
Published: over 6 years ago

10.3390/genes11060709

Extensive Involvement of Alternative Polyadenylation in Single-Nucleus Neurons
Cited by: 3
Author(s): Ying Wang, Weixing Feng, Siwen Xu, Bo He
Software Mentions: 4
Published: about 6 years ago

10.3390/genes11070794

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis
Cited by: 3
Author(s): Edian F. Franco, Pratip Rana, Ana Lídia Queiroz Cavalcante, Artur da Costa da Luiz Silva, Anne Cybelle Pinto Gomide, Adriana Ribeiro Carneiro Folador, Vasco Azevedo, Preetam Ghosh, Rommel Thiago Jucá Ramos
Software Mentions: 4
Published: about 6 years ago

10.3390/genes12020299

Analysis of the Differential Gene and Protein Expression Profiles of Corneal Epithelial Cells Stimulated with Alternating Current Electric Fields
Cited by: 5
Author(s): Bhavani S. Kowtharapu, Jyoti Damaraju, Nitesh Kumar Singh, Josefin Ziebart, Rainer Bader, Dirk Koczan, Oliver Stachs
Software Mentions: 4
Published: over 5 years ago

10.1590/1678-4685-GMB-2019-0090

Integrated analysis of lncRNA-associated ceRNA network identified potential regulatory interactions in osteosarcoma
Cited by: 4
Author(s): Yongwei Wang, Yaxian Gao, Sen Guo, Zhihong Chen
Software Mentions: 4
Published: over 6 years ago

10.1186/s12711-021-00656-9

Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content
Cited by: 7
Author(s): Hao Kang, Di Zhao, Hai Xiang, Jing Li, Guiping Zhao, Hua Li
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-020-1928-4

scMAGeCK links genotypes with multiple phenotypes in single-cell CRISPR screens
Cited by: 35
Author(s): Lin Yang, Yuqing Zhu, Hua Yu, Xinhua Cheng, Sitong Chen, Yulan Chu, He Huang, Zhang Jin, Wei Li
Software Mentions: 4
Published: over 6 years ago

10.1016/j.gpb.2019.05.005

Genome-wide 5-Hydroxymethylcytosine Profiling Analysis Identifies MAP7D1 as A Novel Regulator of Lymph Node Metastasis in Breast Cancer
Cited by: 8
Author(s): Shuang‐Ling Wu, Xiaoyi Zhang, Mengqi Chang, Changcai Huang, Jun Qian, Qing Li, Fang Yuan, Lihong Sun, Xinmiao Yu, Xinmiao Cui, Jiaxin Jiang, Meng-Yao Cui, Ye Liu, Hengchao Wu, Liang Zeng, Xiaoyue Wang, Yamei Niu, Wei‐Min Tong, Feng Jin
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giz047

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood
Cited by: 24
Author(s): Yi Zhao, Xiao Li, Weihua Zhao, Jingwan Wang, Jun Yu, Ziyun Wan, Kai Gao, Gang Ye, Wang Xie, Bingbing Fan, Qinkai Wu, Bangwei Chen, Feng Xie, Jinghua Wu, Wei Zhang, Fang Chen, Huanming Yang, Jian Wang, Xun Xu, Bin Li, Shiping Liu, Yong Hou, Xiao Liu
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giaa109

A map of tumor–host interactions in glioma at single-cell resolution
Cited by: 31
Author(s): Francesca Pia Caruso, Luciano Garofano, Fulvio D’Angelo, Kai Yu, Fuchou Tang, Jinzhou Yuan, Jing Zhang, Luigi Cerulo, Stefano Maria Pagnotta, Davide Bedognetti, Peter A. Sims, Mario L. Suvà, Xiao‐Dong Su, Anna Lasorella, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: almost 6 years ago

10.1186/s41065-019-0100-1

A co-expression network for differentially expressed genes in bladder cancer and a risk score model for predicting survival
Cited by: 16
Author(s): Zihao Chen, Guojun Liu, Aslam Hossain, И. Г. Данилова, Mikhail A. Bolkov, Guoqing Liu, Irina A. Tuzankina, Wanlong Tan
Software Mentions: 4
Published: about 7 years ago

10.1172/jci.insight.145029

Nrf2 overexpression rescues the RPE in mouse models of retinitis pigmentosa
Cited by: 30
Author(s): David M. Wu, Xuke Ji, Maryna V. Ivanchenko, M. S. Chung, Mary E. Piper, Parimal Rana, Sean K. Wang, Y. Y. Xue, Emma R. West, Sophia R. Zhao, Hongbin Xu, Marcelo Cicconet, Wenjun Xiong, Constance L. Cepko
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.41983

Predictive value of hypoxia, metabolism and immune factors for prognosis in hepatocellular carcinoma: a retrospective analysis and multicenter validation study
Cited by: 4
Author(s): Peng Lin, Dong‐Yue Wen, Gang Chen, Yi‐Wu Dang, Yun He, Hong Yang
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.44436

DNA methylation profiling to predict overall survival risk in gastric cancer: development and validation of a nomogram to optimize clinical management
Cited by: 7
Author(s): Xianxiong Ma, Hengyu Chen, Guobin Wang, Lei Li, Kaixiong Tao
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.49262

Pathologic evolution-related Gene Analysis based on both single-cell and bulk transcriptomics in Colorectal Cancer
Cited by: 3
Author(s): Jiali Li, Zhao-Yi Zeng, Jiarui Chen, Xingyu Liu, Xueping Jiang, Wenjie Sun, Yuan Luo, Jiangbo Ren, Yan Gong, Conghua Xie
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.52105

Identification of the hub genes and prognostic indicators of gastric cancer and correlation of indicators with tumor-infiltrating immune cell levels
Cited by: 4
Author(s): Yun Ji, Lu Gao, Can Zhang, Xu Sun, Liping Dai, Zhenyu Ji, Jianying Zhang, Zhida Zhang, Weimin Cao, Yang Zhao, Liguo Zhang
Software Mentions: 4
Published: over 5 years ago

10.1002/jcb.29128

NCF2, MYO1F, S1PR4, and FCN1 as potential noninvasive diagnostic biomarkers in patients with obstructive coronary artery: A weighted gene co‐expression network analysis
Cited by: 24
Author(s): Xiangang Mo, Wei Liu, Yunan Yang, Saber Imani, Shan Lu, Guorong Dan, Xuqiang Nie, Jun Yan, Rong Zhan, Xiaohui Li, Youcai Deng, Bingbo Chen, Yuchen Cai
Software Mentions: 4
Published: about 7 years ago

10.1111/jcmm.14585

Differential coexpression networks in bronchiolitis and emphysema phenotypes reveal heterogeneous mechanisms of chronic obstructive pulmonary disease
Cited by: 11
Author(s): Jiangyue Qin, Ting Yang, Ni Zeng, Chun Wan, Lijuan Gao, Xiaoou Li, Lei Chen, Yongchun Shen, Fuqiang Wen
Software Mentions: 4
Published: almost 7 years ago

10.1111/jcmm.14830

Identification of immune‐enhanced molecular subtype associated with BRCA1 mutations, immune checkpoints and clinical outcome in ovarian carcinoma
Cited by: 23
Author(s): Mingjun Zheng, Yuexin Hu, Rui Gou, Ouxuan Liu, Xin Nie, Xiao Li, Qing Liu, Yingying Hao, Juanjuan Liu, Bei Lin
Software Mentions: 4
Published: over 6 years ago

10.1111/jcmm.15370

Genome‐Wide Analysis of circular RNAs and validation of hsa_circ_0006719 as a potential novel diagnostic biomarker in congenital scoliosis patients
Cited by: 1
Author(s): Gang Liu, Jianxiong Shen, Chong Chen, Yang Jiao, Zheng Li, Haining Tan, Youxi Lin, Tianhua Rong
Software Mentions: 4
Published: about 6 years ago

10.1111/jcmm.15505

Asiaticoside might attenuate bleomycin‐induced pulmonary fibrosis by activating cAMP and Rap1 signalling pathway assisted by A2AR
Cited by: 18
Author(s): Jing Luo, Ting Zhang, Ce Zhu, Junwei Sun, Wenjing Zhu, Wenxiu Ai, Xiaoying Huang, Xiaobing Wang
Software Mentions: 4
Published: about 6 years ago

10.1111/jcmm.16221

Expression and prognostic characteristics of m 5 C regulators in low‐grade glioma
Cited by: 11
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16553

Construction of a SUMOylation regulator‐based prognostic model in low‐grade glioma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16800

Prognostic signature and immune efficacy of m1A‐, m5C‐ and m6A‐related regulators in cutaneous melanoma
Cited by: 20
Author(s): Xian rui Wu, Zheng Chen, Yang Liu, Zi zi Chen, Fengjie Tang, Zhi zhao Chen, Jing Jing Li, Jun Liu, Ke Cao, Xiang Chen, Jianda Zhou
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.16831

Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
Cited by: 7
Author(s): Meng Xiao, Chuang Du, Chuanbo Zhang, Xinzhong Zhang, Shaomin Li, Dainan Zhang, Wang Jia
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8050639

The Role of MicroRNAs in the Regulation of Gastric Cancer Stem Cells: A Meta-Analysis of the Current Status
Cited by: 22
Author(s): Vitalba Ruggieri, Sabino Russi, Pietro Zoppoli, Francesco La Rocca, Tiziana Angrisano, Geppino Falco, Giovanni Calice, Simona Laurino
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms21041518

The Molecular Mechanism of Perillaldehyde Inducing Cell Death in Aspergillus flavus by Inhibiting Energy Metabolism Revealed by Transcriptome Sequencing
Cited by: 18
Author(s): Chao Pan, Yongxin Li, Kunlong Yang, Famous Erhunmwunsee, Yan Ma, Xiaona He, Qingru Geng, Man Liu, Jun Tian
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22052276

Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment
Cited by: 4
Author(s): Viktoria Fuhr, Ehsan Vafadarnejad, Oliver Dietrich, Panagiota Arampatzi, Angela Riedel, Antoine‐Emmanuel Saliba, Andreas Rosenwald, Hilka Rauert-Wunderlich
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22052481

Differential Morpho-Physiological and Transcriptomic Responses to Heat Stress in Two Blueberry Species
Cited by: 5
Author(s): Jodi B Callwood, Kalpalatha Melmaiee, Krishnanand P. Kulkarni, Amaranatha R. Vennapusa, Diarra Aicha, Michael J. Moore, Nicholi Vorsa, Purushothaman Natarajan, Umesh K. Reddy, Sathya Elavarthi
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/3275315

Next-Generation Sequencing Characterizes the Landscape of Somatic Mutations and Pathways in Metastatic Bile Tract Carcinoma
Cited by: 1
Author(s): Qi Li, Qifan Zhang, Xiangdong Cheng, Xie Weng, Mian Chen, Xiaoyun Hu, Jing Huang, Jinzhang Chen
Software Mentions: 4
Published: almost 6 years ago

10.1155/2021/4338838

A Radioresponse-Related lncRNA Biomarker Signature for Risk Classification and Prognosis Prediction in Non-Small-Cell Lung Cancer
Cited by: 14
Author(s): Jiahang Song, Shuming Zhang, Yuanyuan Sun, Junjie Gu, Ziqi Ye, Xinchen Sun, Qiyun Tang
Software Mentions: 4
Published: almost 5 years ago

10.1155/2020/3656841

Genetic Profiles Playing Opposite Roles of Pathogenesis in Schizophrenia and Glioma
Cited by: 3
Author(s): Yujie Wen, Zhiwei Xia, Dongjie Li, Quan Cheng, Qing Zhao, Hui Cao
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/1814266

Gene Model Related to m6A Predicts the Prognostic Effect of Immune Infiltration on Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Yaxiong Deng, Kehua Li, Fengwu Tan, Hanbo Liu
Software Mentions: 4
Published: almost 5 years ago

10.1155/2019/1785042

Low GAS5 Levels as a Predictor of Poor Survival in Patients with Lower-Grade Gliomas
Cited by: 18
Author(s): Yanfang Wang, Xin Shan, Kai Zhang, Run Shi, Xuanwen Bao
Software Mentions: 4
Published: over 7 years ago

10.1186/s13048-017-0323-6

Bioinformatics analysis to screen the key prognostic genes in ovarian cancer
Cited by: 26
Author(s): Li Li, Shengyun Cai, Shengnan Liu, Hao Feng, Junjie Zhang
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.13169

Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing
Cited by: 6
Author(s): Yuan Li, Mei Luo, Xuejiao Shi, Zhiliang Lu, Shengrong Sun, Jianbing Huang, Zhaoli Chen, Jié He
Software Mentions: 4
Published: almost 10 years ago

10.18632/oncotarget.16118

Whole-genome expression analyses of type 2 diabetes in human skin reveal altered immune function and burden of infection
Cited by: 23
Author(s): Wang Chun, Xiaopan Chen, Jing Shu, Chun-Ting Lee
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.22423

Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome
Cited by: 2
Author(s): Shana Claeys, Geertrui Denecker, Robrecht Cannoodt, Candy Kumps, Kaat Durinck, Franki Speleman, Katleen De Preter
Software Mentions: 4
Published: almost 9 years ago

10.18632/oncotarget.25596

Role for the transcriptional activator ZRF1 in early metastatic events in breast cancer progression and endocrine resistance
Cited by: 5
Author(s): Ayşegül Öztürk Kaymak, Sergi Sayols, Thaleia Papadopoulou, Holger Richly
Software Mentions: 4
Published: about 8 years ago

10.1186/s13018-021-02578-0

Bioinformatics integrated analysis to investigate candidate biomarkers and associated metabolites in osteosarcoma
Cited by: 3
Author(s): Jun Wang, Mingzhi Gong, Zhenggang Xiong, Yangyang Zhao, Deguo Xing
Software Mentions: 4
Published: about 5 years ago

10.1186/s13018-021-02552-w

Study on the potential active components and molecular mechanism of Xiao Huoluo Pills in the treatment of cartilage degeneration of knee osteoarthritis based on bioinformatics analysis and molecular docking technology
Cited by: 13
Author(s): Weijian Chen, Tianye Lin, Qi He, Peng Yang, Gangyu Zhang, Fayi Huang, Zihao Wang, Hao Peng, Baolin Li, Liqing Du, Haibin Wang
Software Mentions: 4
Published: about 5 years ago

10.1515/med-2020-0142

An immune-relevant signature of nine genes as a prognostic biomarker in patients with gastric carcinoma
Cited by: 1
Author(s): Bing Wang, Yang Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12967-020-02372-2

Whole blood transcriptomic investigation identifies long non-coding RNAs as regulators in sepsis
Cited by: 38
Author(s): Lixin Cheng, Chuanchuan Nan, Lin Kang, Ning Zhang, Sheng Liu, Huaisheng Chen, Chengying Hong, Youlian Chen, Zhen Liang, Xueyan Liu
Software Mentions: 4
Published: about 6 years ago

10.1186/s12967-021-02804-7

Cerebrospinal fluid cells immune landscape in multiple sclerosis
Cited by: 11
Author(s): Zijian Li, Yongchao Liu, Aili Jia, Yueran Cui, Juan Feng
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.641100

Unearthing of Key Genes Driving the Pathogenesis of Alzheimer’s Disease via Bioinformatics
Cited by: 5
Author(s): Xingxing Zhao, Hongmei Yao, Xinyi Li
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2019.00419

Expression Profile Analysis Identifies a Novel Five-Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 42
Author(s): Yin Wu, Guihua Tang, Quanwei Zhou, Yudong Cao, Haixia Li, Xianyong Fu, Zhaoping Wu, Xingjun Jiang
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20092086

Dynamics of Dual Specificity Phosphatases and Their Interplay with Protein Kinases in Immune Signaling
Cited by: 16
Author(s): Yashwanth Subbannayya, Sneha M. Pinto, Korbinian Bösl, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 3
Published: over 7 years ago

10.3389/fnins.2021.614142

Agonal Factors Distort Gene-Expression Patterns in Human Postmortem Brains
Cited by: 2
Author(s): Jiacheng Dai, Yu Chen, Rujia Dai, Yi Jiang, Jianghua Tian, Sihan Liu, Meng Xu, Miao Li, Jiaqi Zhou, Chunyu Liu, Chao Chen
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20153707

Physiological and Transcriptomic Changes during the Early Phases of Adventitious Root Formation in Mulberry Stem Hardwood Cuttings
Cited by: 16
Author(s): Chunqiong Shang, Honglei Yang, Sang Ma, Qingshan Shen, Li Liu, Chengxiang Hou, Xu Cao, Jialing Cheng
Software Mentions: 3
Published: about 7 years ago

10.1186/s13073-019-0636-8

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma
Cited by: 92
Author(s): Markus Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Rieß, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velić, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, Hans‐Georg Rammensee
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20215400

Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts
Cited by: 6
Author(s): Tiezhu Shi, Lishuang Yao, Ying Han, Piliang Hao, Pengfei Lu
Software Mentions: 3
Published: almost 7 years ago

10.3389/fonc.2020.566430

Hypoxia Correlates With Poor Survival and M2 Macrophage Infiltration in Colorectal Cancer
Cited by: 33
Author(s): Ling Qi, Jiani Chen, Yanmei Yang, Wangxiong Hu
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00716

m6A RNA Methylation Regulators Contribute to Eutopic Endometrium and Myometrium Dysfunction in Adenomyosis
Cited by: 21
Author(s): Junyu Zhai, Shang Li, Sushmita Sen, Jessica Opoku‐Anane, Yanzhi Du, Zi‐Jiang Chen, Linda C. Giudice
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms21010260

Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation
Cited by: 15
Author(s): Na-Hyun Shin, Đỗ Thị Trang, Woo‐Jong Hong, Kiyoon Kang, Chuluuntsetseg Jadamba, Joon‐Kwan Moon, Yo-Han Yoo, Ki‐Hong Jung, Soo-Cheul Yoo
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.00808

Gender Differential Transcriptome in Gastric and Thyroid Cancers
Cited by: 8
Author(s): Abel Sousa, Marta Ferreira, Carla Oliveira, Pedro G. Ferreira
Software Mentions: 3
Published: about 6 years ago

10.3389/fnmol.2017.00250

Expression and Regulatory Network Analysis of miR-140-3p, a New Potential Serum Biomarker for Autism Spectrum Disorder
Cited by: 25
Author(s): Matilde Cirnigliaro, Cristina Barbagallo, Mariangela Gulisano, Carla Noemi Domini, Rita Barone, Davide Barbagallo, Marco Ragusa, Cinzia Di Pietro, Renata Rizzo, Michele Purrello
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12974-017-0924-4

Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis
Cited by: 19
Author(s): Kathrin Bail, Quirin Notz, Damiano M. Rovituso, Andrea Schampel, Marie Wunsch, Tobias Koeniger, Verena Schropp, Richa Bharti, Claus‐Jürgen Scholz, Konrad Foerstner, Christoph Kleinschnitz, Stefanie Küerten
Software Mentions: 3
Published: about 9 years ago

10.1172/jci.insight.146098

SLFN11 captures cancer-immunity interactions associated with platinum sensitivity in high-grade serous ovarian cancer
Cited by: 9
Author(s): C Winkler, Matthew King, Julie Berthe, Domenico Ferraioli, Anna Garuti, Federica Grillo, Jaime Rodriguez‐Canales, Lorenzo Ferrando, Nicolás Chopin, Isabelle Ray‐Coquard, Oona Delpuech, Davide Bedognetti, Alberto Ballestrero, Elisabetta Leo, Gabriele Zoppoli
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.719201

Genome-Wide Transcription Analysis of Electroacupuncture Precondition-Induced Ischemic Tolerance on SD Rat With Ischemia–Reperfusion Injury
Cited by: 2
Author(s): Shunjun Fu, Min Yu, Houxi Xu, Qing Liu, Xiaoxiao Li, Yaling Wang, Yonglin Chen, Ling-Ling Meng, Yu Qiu, Xianwen Jing, Chenchen Liu, Lu Shen
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2019.00906

A Novel Prognostic Signature of Transcription Factors for the Prediction in Patients With GBM
Cited by: 33
Author(s): Quan Cheng, Chunhai Huang, Hui Cao, Jinghu lin, Xuan Gong, Jian Li, Yuanbing Chen, Zhi Tian, Fang Zhen-yu, Jun Huang
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2020.574304

Characterization and Development of Microsatellite Markers in Pseudotaxus chienii (Taxaceae) Based on Transcriptome Sequencing
Cited by: 11
Author(s): Ruixiang Xu, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fgene.2020.540094

Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis
Cited by: 16
Author(s): Qiwei Yang, Weiwei Chu, Wei Yang, Yan-Qiong Cheng, Chuanmin Chu, Xiuwu Pan, Jianqing Ye, Jun Cao, Sishun Gan, Xingang Cui
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2021.604784

Influence of Immune Microenvironment on Diagnosis and Prognosis of Head and Neck Squamous Cell Carcinoma
Cited by: 8
Author(s): Guo-Hong Liu, Chunjue Yuan, Jiaojiao Ma, Yunbao Pan, Haibo Xu
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.562971

ASDmiR: A Stepwise Method to Uncover miRNA Regulation Related to Autism Spectrum Disorder
Cited by: 5
Author(s): Chenchen Xiong, Shaoping Sun, Weili Jiang, Junpeng Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40104-020-00494-7

Identification of novel molecular markers of mastitis caused by Staphylococcus aureus using gene expression profiling in two consecutive generations of Chinese Holstein dairy cattle
Cited by: 26
Author(s): Di Wang, Lei Liu, Serafino M. A. Augustino, Tao Duan, Thomas J. Hall, David E. MacHugh, Junling Dou, Yi Zhang, Yachun Wang, Ying Yu
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms221810117

LncRNA-CR11538 Decoys Dif/Dorsal to Reduce Antimicrobial Peptide Products for Restoring Drosophila Toll Immunity Homeostasis
Cited by: 9
Author(s): Hongjian Zhou, Shengjie Li, Shanshan Wu, Jin Park, Fei Ma
Software Mentions: 3
Published: almost 5 years ago

10.3390/genes11101187

Exaggerated Autophagy in Stanford Type A Aortic Dissection: A Transcriptome Pilot Analysis of Human Ascending Aortic Tissues
Cited by: 13
Author(s): Ze-Hua Zhou, Yan Liu, Xiyu Zhu, Xingming Tang, Yali Wang, Junxia Wang, Can Xu, Dongjin Wang, Jie Du, Qing Zhou
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms21249506

Maize microRNA166 Inactivation Confers Plant Development and Abiotic Stress Resistance
Cited by: 19
Author(s): Na Li, Tianxiao Yang, Zhanyong Guo, Qiusheng Wang, Mao Chai, Mingbo Wu, Xiaoqi Li, Weiya Li, Guangxian Li, Jihua Tang, Guiliang Tang, Zhanhui Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22179432

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts
Cited by: 0
Author(s): Laurent Winckers, Chris T. Evelo, Egon Willighagen, Martina Kutmon
Software Mentions: 3
Published: almost 5 years ago

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