bioconductor: clusterProfiler | Projects

10.3389/fmolb.2021.679031

Identification and Validation of Immune-Related Gene Signature for Predicting Lymph Node Metastasis and Prognosis in Lung Adenocarcinoma
Cited by: 19
Author(s): Ru Jia, Zhilin Sui, Hongdian Zhang, Zhentao Yu
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.706949

CD74 Correlated With Malignancies and Immune Microenvironment in Gliomas
Cited by: 11
Author(s): Shengchao Xu, Xizhe Li, Lu Tang, Zhixiong Liu, Kui Yang, Quan Cheng
Software Mentions: 4
Published: almost 5 years ago

10.1007/s00401-021-02327-x

Targeting fibroblast growth factor receptors to combat aggressive ependymoma
Cited by: 9
Author(s): Daniela Lötsch, Dominik Kirchhofer, Bernhard Englinger, Li Jiang, Konstantin Okonechnikov, Daniel Senfter, Anna Laemmerer, Lisa Gabler, Christine Pirker, Andrew M. Donson, Peter Bannauer, Pia Korbel, Carola Jaunecker, Jens-Martin Hübner, Lisa Mayr, Sibylle Madlener, Maria Theresa Schmook, Gerda Ricken, Kendra K. Maaß, Michael Grusch, Klaus Holzmann, Bettina Grasl‐Kraupp, Sabine Spiegl-Kreinecker, Jennifer L. Hsu, Christian Dorfer, Karl Rössler, Amedeo A. Azizi, Nicholas Foreman, Andreas Peyrl, Christine Haberler, Thomas Czech, Irene Slavc, Mariella G. Filbin, Kristian W. Pajtler, Marcel Kool, Walter Berger, Johannes Gojo
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/giaa109

A map of tumor–host interactions in glioma at single-cell resolution
Cited by: 31
Author(s): Francesca Pia Caruso, Luciano Garofano, Fulvio D’Angelo, Kai Yu, Fuchou Tang, Jinzhou Yuan, Jing Zhang, Luigi Cerulo, Stefano Maria Pagnotta, Davide Bedognetti, Peter A. Sims, Mario L. Suvà, Xiao‐Dong Su, Anna Lasorella, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmolb.2021.653805

High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: about 5 years ago

10.1016/j.molcel.2018.09.023

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery
Cited by: 20
Author(s): Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Fabio Puddu, Samuel Robson, Stephen Jackson, Tony Kouzarides
Software Mentions: 4
Published: almost 8 years ago

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.614888

Integrated Analysis of Immunity- and Ferroptosis-Related Biomarker Signatures to Improve the Prognosis Prediction of Hepatocellular Carcinoma
Cited by: 41
Author(s): Xuanlong Du, Zhang Ye-wei
Software Mentions: 4
Published: over 5 years ago

10.1186/s41065-019-0100-1

A co-expression network for differentially expressed genes in bladder cancer and a risk score model for predicting survival
Cited by: 16
Author(s): Zihao Chen, Guojun Liu, Aslam Hossain, И. Г. Данилова, Mikhail A. Bolkov, Guoqing Liu, Irina A. Tuzankina, Wanlong Tan
Software Mentions: 4
Published: about 7 years ago

10.1016/j.molmet.2018.09.011

Regulation of glucose uptake and inflammation markers by FOXO1 and FOXO3 in skeletal muscle
Cited by: 35
Author(s): Lars Lundell, Julie Massart, Ali Altıntaş, Anna Krook, Juleen R. Zierath
Software Mentions: 4
Published: over 7 years ago

10.1002/jcb.29128

NCF2, MYO1F, S1PR4, and FCN1 as potential noninvasive diagnostic biomarkers in patients with obstructive coronary artery: A weighted gene co‐expression network analysis
Cited by: 24
Author(s): Xiangang Mo, Wei Liu, Yunan Yang, Saber Imani, Shan Lu, Guorong Dan, Xuqiang Nie, Jun Yan, Rong Zhan, Xiaohui Li, Youcai Deng, Bingbo Chen, Yuchen Cai
Software Mentions: 4
Published: about 7 years ago

10.1186/s13024-019-0351-3

Genetic perturbations of disease risk genes in mice capture transcriptomic signatures of late-onset Alzheimer’s disease
Cited by: 24
Author(s): Ravi S. Pandey, Leah C. Graham, Asli Uyar, Christoph Preuß, Gareth R. Howell, Gregory W. Carter
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.664334

Disruption of Circadian Transcriptome in Lung by Acute Sleep Deprivation
Cited by: 6
Author(s): Yuntao Lu, Bing Liu, Junjie Ma, Shuo Yang, Ju Huang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.641756

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete
Cited by: 0
Author(s): Andrew Hesketh, Giselda Bucca, Colin P. Smith, Hee‐Jeon Hong
Software Mentions: 4
Published: over 5 years ago

10.1038/s41380-020-00955-5

Temporal unsnarling of brain’s acute neuroinflammatory transcriptional profiles reveals panendothelitis as the earliest event preceding microgliosis
Cited by: 24
Author(s): Mahesh Chandra Kodali, Hao Chen, Francesca‐Fang Liao
Software Mentions: 4
Published: over 5 years ago

10.1186/s12872-020-01653-4

Identification of key genes in atrial fibrillation using bioinformatics analysis
Cited by: 4
Author(s): Yueheng Liu, Rui Tang, Ye Zhao, Xuan Jiang, Yuchao Wang, Tingting Gu
Software Mentions: 4
Published: almost 6 years ago

10.1002/cbf.3491

Identification and functional analysis of long non‐coding RNAs in the synovial membrane of osteoarthritis patients
Cited by: 7
Author(s): Xiaolong Shui, Qipeng Xie, Shaomin Chen, Chengwei Zhou, Jianzhong Kong, Yi Wang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12885-021-08536-7

SERPINE1 associated with remodeling of the tumor microenvironment in colon cancer progression: a novel therapeutic target
Cited by: 26
Author(s): Shaokun Wang, Li Pang, Zuolong Liu, Xiangchuan Meng
Software Mentions: 4
Published: about 5 years ago

10.3389/fmed.2021.675842

Exosomal Circular RNA RNA-seq Profiling and the Carcinogenic Role of Exosomal circ-CYP24A1 in Cutaneous Squamous Cell Carcinoma
Cited by: 9
Author(s): Zheng Zhang, Hao Guo, Wen‐Jia Yang, Jiu‐Hong Li
Software Mentions: 4
Published: about 5 years ago

10.1186/s12885-020-6513-4

Immunogenomic pathways associated with cytotoxic lymphocyte infiltration and survival in colorectal cancer
Cited by: 8
Author(s): Yuanyuan Shen, Yue Guan, Justin Hummel, Chi‐Ren Shyu, Jonathan B. Mitchem
Software Mentions: 4
Published: over 6 years ago

10.1186/s12957-021-02201-w

Gene coexpression network approach to develop an immune prognostic model for pancreatic adenocarcinoma
Cited by: 5
Author(s): Xing Gu, Qiqi Zhang, Xueying Wu, Yue Fan, Ji Qian
Software Mentions: 4
Published: over 5 years ago

10.1007/s00401-020-02176-0

Congenic expression of poly-GA but not poly-PR in mice triggers selective neuron loss and interferon responses found in C9orf72 ALS
Cited by: 36
Author(s): Katherine D. LaClair, Qihui Zhou, Meike Michaelsen, Benedikt Wefers, Monika S. Brill, Aleksandar Janjic, Birgit Rathkolb, Daniel Farny, Mikolaj Cygan, Martin Hrabě de Angelis, Wolfgang Wurst, Manuela Neumann, Wolfgang Enard, Thomas Misgeld, Thomas Arzberger, Dieter Edbauer
Software Mentions: 4
Published: about 6 years ago

10.3390/pathogens9070524

The Effect of Natural Feline Coronavirus Infection on the Host Immune Response: A Whole-Transcriptome Analysis of the Mesenteric Lymph Nodes in Cats with and without Feline Infectious Peritonitis
Cited by: 5
Author(s): Alexandra Malbon, Giancarlo Russo, Carole Burgener, Emi Barker, Marina L. Meli, Séverine Tasker, Anja Kipar
Software Mentions: 4
Published: about 6 years ago

10.3389/fbioe.2020.00266

Characterization of lncRNA-Associated ceRNA Network to Reveal Potential Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 8
Author(s): Yang Wang, Ruyi He, Lixin Ma
Software Mentions: 4
Published: over 6 years ago

10.7150/jca.52105

Identification of the hub genes and prognostic indicators of gastric cancer and correlation of indicators with tumor-infiltrating immune cell levels
Cited by: 4
Author(s): Yun Ji, Lu Gao, Can Zhang, Xu Sun, Liping Dai, Zhenyu Ji, Jianying Zhang, Zhida Zhang, Weimin Cao, Yang Zhao, Liguo Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.699385

Analysis of Immune–Stromal Score-Based Gene Signature and Molecular Subtypes in Osteosarcoma: Implications for Prognosis and Tumor Immune Microenvironment
Cited by: 3
Author(s): Dingzhao Zheng, Kai-Chun Yang, Xinjiang Chen, Yongwu Li, Yongchun Chen
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.11561

The m<sup>6</sup>A-related gene signature for predicting the prognosis of breast cancer
Cited by: 7
Author(s): Shanliang Zhong, Lin Zhenzhong, Huanwen Chen, Ling Mao, Jifeng Feng, Siying Zhou
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.9812

Using bioinformatics and metabolomics to identify altered granulosa cells in patients with diminished ovarian reserve
Cited by: 6
Author(s): Ruifen He, Zhongying Zhao, Yongxiu Yang, Xiaolei Liang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fimmu.2019.02451

Pan-Cancer Analysis Reveals Disrupted Circadian Clock Associates With T Cell Exhaustion
Cited by: 51
Author(s): Yingcheng Wu, Baorui Tao, Tianyang Zhang, Yihui Fan, Renfang Mao
Software Mentions: 4
Published: almost 7 years ago

10.3389/fbioe.2020.00206

Predicting the Risk of Melanoma Metastasis Using an Immune Risk Score in the Melanoma Cohort
Cited by: 4
Author(s): Yang Sheng, Cheng Yan-ping, Tong Liu, Ning Liu, Yufeng Liu, Geyu Liang
Software Mentions: 4
Published: over 6 years ago

10.1002/2211-5463.12983

Identification of modules and novel prognostic biomarkers in liver cancer through integrated bioinformatics analysis
Cited by: 5
Author(s): Bo Shen, Kun Li, Yuting Zhang
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.10437

Comprehensive pathway-related genes signature for prognosis and recurrence of ovarian cancer
Cited by: 1
Author(s): Xinnan Zhao, Miao He
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8873

Bioinformatics analyses of retinoblastoma reveal the retinoblastoma progression subtypes
Cited by: 6
Author(s): Manjing Cao, Sha Wang, Jing Zou, Wanpeng Wang
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2020.558961

Identification of Prognostic Model and Biomarkers for Cancer Stem Cell Characteristics in Glioblastoma by Network Analysis of Multi-Omics Data and Stemness Indices
Cited by: 27
Author(s): Jianyang Du, Xiuwei Yan, Shan Mi, Yuan Li, Hang Ji, Kezuo Hou, Shuai Ma, Yixu Ba, Peng Zhou, Lei Chen, Rui Xie, Shaoshan Hu
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.10933

Tissue-specific transcriptome analysis of drought stress and rehydration in Trachycarpus fortunei at seedling
Cited by: 2
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.48664

MMP9 and IGFBP1 Regulate Tumor Immune and Drive Tumor Progression in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Tianbo Xu, Su Gao, Jingchong Liu, Yu Huang, Ke Chen, Xiaoping Zhang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.6848

Leptin-a mediates transcription of genes that participate in central endocrine and phosphatidylinositol signaling pathways in 72-hour embryonic zebrafish (<i>Danio rerio</i>)
Cited by: 5
Author(s): Matthew Tuttle, Mark Dalman, Qin Liu, Richard L. Londraville
Software Mentions: 4
Published: over 7 years ago

10.3390/ani11082165

Comprehensive Transcriptomic Comparison between Porcine CD8− and CD8+ Gamma Delta T Cells Revealed Distinct Immune Phenotype
Cited by: 7
Author(s): Sang–Wook Kim, Bee-Oh Lim, Sameer-ul-Salam Mattoo, Eunyoung Oh, Chang-Gi Jeong, Won-Il Kim, Kyung-Tai Lee, Sang-Myeong Lee, Junmo Kim
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.672168

Progesterone Dampens Immune Responses in In Vitro Activated CD4+ T Cells and Affects Genes Associated With Autoimmune Diseases That Improve During Pregnancy
Cited by: 18
Author(s): Sandra Hellberg, Johanna Raffetseder, Olof Rundquist, Rasmus Magnusson, Georgia Papapavlou, Maria C. Jenmalm, Jan Ernerudh, Mika Gustafsson
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.666163

Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients
Cited by: 22
Author(s): Stéphanie Bibert, Nicolas Guex, João Lourenço, Thomas Brahier, Matthaios Papadimitriou-Olivgeris, Lauro Damonti, Oriol Manuel, Robin Liechti, Lou Götz, Jonathan Tschopp, Mathieu Quinodoz, Péter Vollenweider, Jean‐Luc Pagani, Mauro Oddo, Olivier Hügli, Frédéric Lamoth, Véronique Erard, Cathy Voide, Mauro Delorenzi, Nathalie Rufer, Fabio Candotti, Carlo Rivolta, Noémie Boillat‐Blanco, Pierre‐Yves Bochud
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2021.714718

Opposite Roles of Tumor Cell Proliferation and Immune Cell Infiltration in Postoperative Liver Metastasis of PDAC
Cited by: 0
Author(s): Guangfu Wang, Shangnan Dai, Hao Gao, Yong Gao, Lingdi Yin, Kai Zhang, Xumin Huang, Zipeng Lu, Yi Miao
Software Mentions: 4
Published: almost 5 years ago

10.31557/APJCP.2020.21.6.1787

Risk Scoring System based on lncRNA Expression for Predicting Survival in Hepatocellular Carcinoma with Cirrhosis
Cited by: 13
Author(s): Jiaxiang Ye, Haixia Li, Jiazhang Wei, Yue Luo, Hongmei Li, Jinyan Zhang, Xi Luo
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.7135

Comprehensive analysis of an lncRNA-miRNA-mRNA competing endogenous RNA network in pulpitis
Cited by: 31
Author(s): Fangcao Lei, Han Zhang, Xiaoli Xie
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.9452

Integrative analysis of competitive endogenous RNA network reveals the regulatory role of non-coding RNAs in high-glucose-induced human retinal endothelial cells
Cited by: 6
Author(s): Nanjue Cao, Henan Liu, Feng Dong, Wei Wang, Wei Sun, Gang Wang
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2020.588368

A Novel Signature Constructed by RNA-Binding Protein Coding Genes to Improve Overall Survival Prediction of Glioma Patients
Cited by: 11
Author(s): Zewei Tu, Lei Shu, Jingying Li, Lei Wu, Chuming Tao, Minhua Ye, Xingen Zhu, Kai Huang
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/5590743

Summarizing the Effective Herbs for the Treatment of Hypertensive Nephropathy by Complex Network and Machine Learning
Cited by: 6
Author(s): Jia-Ming Huan, Wen-Ge Su, Li Wei, Chao Gao, Pingzhu Zhou, FU Chun-sheng, Xiaofeng Wang, Yimin Wang
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.7313

Bioinformatics analysis of microarray data to identify the candidate biomarkers of lung adenocarcinoma
Cited by: 37
Author(s): Tingting Guo, Hongwen Ma, Yuting Zhou
Software Mentions: 4
Published: about 7 years ago

10.1038/s41421-020-00218-1

3D landscape of Hepatitis B virus interactions with human chromatins
Cited by: 20
Author(s): Bo Yang, Boyuan Li, Lingfei Jia, Yongpeng Jiang, Xin Wang, Shaodong Jiang, Shunda Du, Ji Xiong, Pengyuan Yang
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.713569

Identification of Immune Cell Infiltration Landscape and Their Prognostic Significance in Uveal Melanoma
Cited by: 11
Author(s): Zaizhu Han, Yun Chen, Pan Shen, Lan Gong
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.9627

Mining of prognosis-related genes in cervical squamous cell carcinoma immune microenvironment
Cited by: 5
Author(s): Jiong Ma, Pu Cheng, Xuejun Chen, Chunxia Zhou, Zheng Wei
Software Mentions: 4
Published: almost 6 years ago

10.18632/aging.103859

Weighted gene coexpression network analysis identifies the key role associated with acute coronary syndrome
Cited by: 4
Author(s): Yong Wang, Miao Liu, Tao Lin, Jianhong Chen, Chuan-Meng Zhu, Ye Li, Bin Qi, Fei Liao, Rongshan Li
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcell.2021.630634

FGD5-AS1 Is a Hub lncRNA ceRNA in Hearts With Tetralogy of Fallot Which Regulates Congenital Heart Disease Genes Transcriptionally and Epigenetically
Cited by: 13
Author(s): Xingyu Zhang, Yun‐Qian Gao, Xiaoping Zhang, Xiaoqing Zhang, Ying Xiang, Qin Fu, Bo Wang, Zhuoming Xu
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/7061972

Electroacupuncture Alleviates Experimental Chronic Inflammatory Pain by Inhibiting Calcium Voltage-Gated Channel-Mediated Inflammation
Cited by: 5
Author(s): Jie Zhou, Jiang Ying, Ruijie Ma, Hongyun Song, Qin Chen, Yueyang Chai, Yi Liang, You Zhou, Jianqiao Fang
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.667875

TNF-Alpha Pathway Alternation Predicts Survival of Immune Checkpoint Inhibitors in Non-Small Cell Lung Cancer
Cited by: 9
Author(s): Anqi Lin, Hongman Zhang, Hua Meng, Ze Deng, Tianqi Gu, Peng Luo, Jian Zhang
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.691142

Dynamic Network Biomarker of Pre-Exhausted CD8+ T Cells Contributed to T Cell Exhaustion in Colorectal Cancer
Cited by: 16
Author(s): Jiaqi Hu, Chongyin Han, Jiayuan Zhong, Huisheng Liu, Rui Li, Wei Luo, Pei Chen, Fei Ling
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.11931

Establishment of a ferroptosis-related gene signature for prognosis in lung adenocarcinoma patients
Cited by: 4
Author(s): Jingjing Cai, Chunyan Li, Hongsheng Li, Xiaoxiong Wang, Yunyun Zhou
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2021.691676

A Novel Risk Model Based on Lipid Metabolism-Associated Genes Predicts Prognosis and Indicates Immune Microenvironment in Breast Cancer
Cited by: 13
Author(s): Zhimin Ye, Shengmei Zou, Zhiyuan Niu, Zhijie Xu, Yongbin Hu
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2021.699263

Spatiotemporal and Functional Heterogeneity of Hematopoietic Stem Cell-Competent Hemogenic Endothelial Cells in Mouse Embryos
Cited by: 5
Author(s): Yunqiao Li, Yandong Gong, Siyuan Hou, Tao Huang, Haizhen Wang, Di Liu, Yanli Ni, Chaojie Wang, Junliang Wang, Jun Hou, Ruihua Yang, Yan Jing, Guangyu Zhang, Bing Liu, Yu Lan
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2021.695533

Identification of a Costimulatory Molecule Gene Signature to Predict Survival and Immunotherapy Response in Head and Neck Squamous Cell Carcinoma
Cited by: 12
Author(s): Ling Aye, Xiaole Song, Jingyi Yang, Li Hu, Xicai Sun, Jiaju Zhou, Quan Liu, Hongmeng Yu, Dehui Wang
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.101751

miRNA-mRNA crosstalk in myocardial ischemia induced by calcified aortic valve stenosis
Cited by: 12
Author(s): Chenyang Duan, Zhijun Cao, Fuqin Tang, Jian Zhao, Chunshui Liang, Hong Liu, Xiao Ye, Liangming Liu, Rong Ma
Software Mentions: 4
Published: over 7 years ago

10.3390/plants10050919

Transcriptomic Analysis of Radish (Raphanus sativus L.) Spontaneous Tumor
Cited by: 2
Author(s): А.А. Ткаченко, И. Е. Додуева, Varvara E. Tvorogova, Alexander V. Predeus, Olga Pravdina, Ksenia Kuznetsova, Л. А. Лутова
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10040793

Differential Epigenetic Marks Are Associated with Apospory Expressivity in Diploid Hybrids of Paspalum rufum
Cited by: 4
Author(s): Mariano Soliman, Maricel Podio, G. Marconi, Marco Di Marsico, Juan Pablo Amelio Ortiz, Emidio Albertini, Luciana Delgado
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10040769

Transcriptome Analysis of Needle and Root of Pinus Massoniana in Response to Continuous Drought Stress
Cited by: 10
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang, Qiao Li, Jie Ran
Software Mentions: 4
Published: over 5 years ago

10.1172/jci.insight.145029

Nrf2 overexpression rescues the RPE in mouse models of retinitis pigmentosa
Cited by: 30
Author(s): David M. Wu, Xuke Ji, Maryna V. Ivanchenko, M. S. Chung, Mary E. Piper, Parimal Rana, Sean K. Wang, Y. Y. Xue, Emma R. West, Sophia R. Zhao, Hongbin Xu, Marcelo Cicconet, Wenjun Xiong, Constance L. Cepko
Software Mentions: 4
Published: over 5 years ago

10.1155/2019/5058313

Transcriptome Analysis of Hypertrophic Heart Tissues from Murine Transverse Aortic Constriction and Human Aortic Stenosis Reveals Key Genes and Transcription Factors Involved in Cardiac Remodeling Induced by Mechanical Stress
Cited by: 7
Author(s): Peng Yu, Baoli Zhang, Ming Liu, Ying Yu, Jian Zhao, Chunyu Zhang, Yana Li, Lei Zhang, Xue Yang, Hong Jiang, Yunzeng Zou, Junbo Ge
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcell.2021.670184

A Novel Ferroptosis-Related Gene Signature for Overall Survival Prediction in Patients With Breast Cancer
Cited by: 18
Author(s): Lizhe Zhu, Qiang Tian, Siyuan Jiang, Huan Gao, Shibo Yu, Yifeng Zhou, Yan Yu, Yu Ren, Jianjun He, Bin Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.670777

Decidual NR2F2-Expressing CD4+ T Cells Promote TH2 Transcriptional Program During Early Pregnancy
Cited by: 2
Author(s): Yan Lin, Di Zhang, Yangyang Li, Yunyun Li, Bin Li, Meirong Du
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/1814266

Gene Model Related to m6A Predicts the Prognostic Effect of Immune Infiltration on Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Yaxiong Deng, Kehua Li, Fengwu Tan, Hanbo Liu
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2019.01119

Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.680413

Identification of a Prognostic Signature for Ovarian Cancer Based on the Microenvironment Genes
Cited by: 9
Author(s): Xiao Huo, Hengzi Sun, Shuangwu Liu, Bing Liang, Huimin Bai, Shuzhen Wang, Shuhong Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.617350

ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
Cited by: 15
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.634162

Significance of RNA N6-Methyladenosine Regulators in the Diagnosis and Subtype Classification of Childhood Asthma Using the Gene Expression Omnibus Database
Cited by: 32
Author(s): Bing Dai, Feifei Sun, Xuxu Cai, Chunlu Li, Henan Liu, Yunxiao Shang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00427

Bioinformatics Analysis Reveals Biomarkers With Cancer Stem Cell Characteristics in Lung Squamous Cell Carcinoma
Cited by: 38
Author(s): Yi Liao, Hua Xiao, Mengqing Cheng, Xiaoxuan Fan
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2019.00697

Cross-Species Gene Expression Analysis Reveals Gene Modules Implicated in Human Osteosarcoma
Cited by: 12
Author(s): Zheng Jin, Shanshan Liu, Pei‐Wen Zhu, Mengyan Tang, Yuanxin Wang, Yuan Tian, Li Dong, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 4
Published: about 7 years ago

10.3389/fgene.2020.00877

Muscle Transcriptome Analysis Reveals Potential Candidate Genes and Pathways Affecting Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Xueyan Zhao, Hongmei Hu, Haichao Lin, Wang Cheng, Yanping Wang, Jiying Wang
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2021.673192

Immune and Metabolic Dysregulated Coding and Non-coding RNAs Reveal Survival Association in Uterine Corpus Endometrial Carcinoma
Cited by: 1
Author(s): Da Liu, Min Qiu
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.563954

Identification of Critical Genes and Proteins for Stent Restenosis Induced by Esophageal Benign Hyperplasia in Esophageal Cancer
Cited by: 4
Author(s): Li Weng, Shanshan Shen, Shaoqiu Wu, Xiaoxing Yin, Bingyan Liu, Ming Shang, Xiaoping Zou, Aiwu Mao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.666371

A Novel Signature for Predicting Prognosis of Smoking-Related Squamous Cell Carcinoma
Cited by: 4
Author(s): Chang Chen, Xiaoqing Cheng, Shuyan Li, Huanghui Chen, Mengjing Cui, Linlin Bian, Hui Jin
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.613744

Integrated Weighted Gene Co-expression Network Analysis Identified That TLR2 and CD40 Are Related to Coronary Artery Disease
Cited by: 6
Author(s): Bin Qi, Jianhong Chen, Tao Lin, Chuan-Meng Zhu, Yong Wang, Guo-Xiong Deng, Miao Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.671179

Significance of N6-Methyladenosine RNA Methylation Regulators in Immune Infiltrates of Ovarian Cancer
Cited by: 9
Author(s): Jing Gu, Fangfang Bi
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.00243

New Insights From Imputed Whole-Genome Sequence-Based Genome-Wide Association Analysis and Transcriptome Analysis: The Genetic Mechanisms Underlying Residual Feed Intake in Chickens
Cited by: 10
Author(s): Shaopan Ye, Zitao Chen, Rongrong Zheng, Shuqi Diao, Jinyan Teng, Xiaolong Yuan, Hao Zhang, Zanmou Chen, Xiquan Zhang, Jiaqi Li, Zhe Zhang
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.741608

Identification of Key Regulators of Hepatitis C Virus-Induced Hepatocellular Carcinoma by Integrating Whole-Genome and Transcriptome Sequencing Data
Cited by: 7
Author(s): L. Chen, Wei Zhang, Yiran Ben
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2018.00412

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response
Cited by: 14
Author(s): Janet Piñero, Abel González-Pérez, Emre Güney, Joaquim Aguirre‐Plans, Ferrán Sanz, Baldo Oliva, Laura I. Furlong
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.599261

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection
Cited by: 53
Author(s): Komudi Singh, Yunching Chen, Shakiba Hassanzadeh, Han Kim, Jennifer Judy, Fayaz Seifuddin, Ilker Tunc, Michael N. Sack, Mehdi Pirooznia
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.680369

Identification of MX2 as a Novel Prognostic Biomarker for Sunitinib Resistance in Clear Cell Renal Cell Carcinoma
Cited by: 27
Author(s): Yuang Wei, Xinglin Chen, Xiaohan Ren, Bao Wang, Qian Zhang, Hengtao Bu, Ji Qian, Pengfei Shao
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2020.584624

Development and Validation of an RNA-Binding Protein-Based Prognostic Model for Ovarian Serous Cystadenocarcinoma
Cited by: 1
Author(s): Yunan He, Sen Zeng, Shunjie Hu, Fengqian Zhang, Nianchun Shan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2020.566918

Transcriptomic Analysis of Glycolysis-Related Genes Reveals an Independent Signature of Bladder Carcinoma
Cited by: 3
Author(s): Zezhong Mou, Chen Yang, Zheyu Zhang, Siqi Wu, Chenyang Xu, Cheng Zhang, Xiaoming Dai, Xinan Chen, Yuxi Ou, Haowen Jiang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2020.605623

Long Non-coding RNA BTG3-7:1 and JUND Co-regulate C21ORF91 to Promote Triple-Negative Breast Cancer Progress
Cited by: 0
Author(s): Dan Zheng, Xiujing He, Ting Luo, Xiaorong Zhong, Hong Zheng, Jiqiao Yang, Yanchu Li, Jing Jing
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2018.00375

L-Lactate Regulates the Expression of Synaptic Plasticity and Neuroprotection Genes in Cortical Neurons: A Transcriptome Analysis
Cited by: 57
Author(s): Michael B. Margineanu, Hanan Mahmood, Hubert Fiumelli, Pierre J. Magistretti
Software Mentions: 4
Published: almost 8 years ago

10.3389/fnmol.2021.624881

Identification of Natural Antisense Transcripts in Mouse Brain and Their Association With Autism Spectrum Disorder Risk Genes
Cited by: 0
Author(s): Baran Koç, Geoffrey Fucile, Roland Schmucki, Nicolas Giroud, Tobias Bergauer, Benjamin J. Hall
Software Mentions: 4
Published: over 5 years ago

10.3389/fnmol.2021.639145

Post-stroke Delivery of Valproic Acid Promotes Functional Recovery and Differentially Modifies Responses of Peri-Infarct Microglia
Cited by: 6
Author(s): Tung‐Tai Kuo, Vicki Wang, Jui-Sheng Wu, Yuan-Hao Chen, Kuan-Yin Tseng
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2021.691631

Hippocampal Transcriptome Changes After Subarachnoid Hemorrhage in Mice
Cited by: 4
Author(s): Angelique Regnier-Golanov, Friederike Dündar, Paul Zumbo, Doron Betel, Magda S Hernandez, Leif E. Peterson, Eng H. Lo, Eugene V. Golanov, Gavin W. Britz
Software Mentions: 4
Published: about 5 years ago

10.3389/fnins.2021.605654

Alteration of N6 -Methyladenosine mRNA Methylation in a Rat Model of Cerebral Ischemia–Reperfusion Injury
Cited by: 34
Author(s): Dazhuang Yi, Qunhui Wang, Yuhao Zhao, Shuhui Yu, Hong You, Jian Wang, Renjie Liu, Shi Zhong-qiang, Xuan Chen, Qi Luo
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2020.562292

Human iPSC-Derived Neuronal Cells From CTBP1-Mutated Patients Reveal Altered Expression of Neurodevelopmental Gene Networks
Cited by: 5
Author(s): S. Vijayalingam, Uthayashanker R. Ezekiel, Fenglian Xu, T. Subramanian, Elizabeth Geerling, Brittany Hoelscher, KayKay San, Aravinda Ganapathy, Kyle Pemberton, Eric Tycksen, Amelia K. Pinto, James D. Brien, David B. Beck, Wendy K. Chung, Christina A. Gurnett, G. Chinnadurai
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2019.01181

Circular RNA-Associated Competing Endogenous RNA Network and Prognostic Nomogram for Patients With Colorectal Cancer
Cited by: 42
Author(s): Wei Song, Tao Fu
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2021.614497

Molecular and Clinical Characterization of CCT2 Expression and Prognosis via Large-Scale Transcriptome Profile of Breast Cancer
Cited by: 6
Author(s): Qiang Liu, Yihang Qi, Xiangyi Kong, Xiangyu Wang, Wenxiang Zhang, Jie Zhai, Yazhe Yang, Yi Fang, Jing Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.636461

Identification of Early Diagnostic and Prognostic Biomarkers via WGCNA in Stomach Adenocarcinoma
Cited by: 21
Author(s): Ruoyue Tan, Guanghui Zhang, Ruochen Liu, Jingyao Hou, Zhen Dong, Chaowei Deng, Sicheng Wan, Xiaodong Liu, Hongjuan Cui
Software Mentions: 4
Published: about 5 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.744951

The Landscape of Immune Cells Indicates Prognosis and Applicability of Checkpoint Therapy in Hepatocellular Carcinoma
Cited by: 7
Author(s): Jiacheng Huang, Lele Zhang, Jianxiang Chen, Dalong Wan, Lin Zhou, Shusen Zheng, Yiting Qiao
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.609601

Identify and Validate the Transcriptomic, Functional Network, and Predictive Validity of FBXL19-AS1 in Hepatocellular Carcinoma
Cited by: 4
Author(s): Dingdong He, Xiaokang Zhang, Xinyu Zhu, Narayani Maharjan, Yingchao Wang, Ping Luo, Chunzi Liang, Jiancheng Tu
Software Mentions: 4
Published: over 5 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223