bioconductor: clusterProfiler | Projects

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40659-018-0188-1

Identification of key genes and miRNAs markers of papillary thyroid cancer
Cited by: 31
Author(s): Jie Qiu, Wenwei Zhang, Chuanshan Zang, Xiaomin Liu, Fuxue Liu, Ruifeng Ge, Yan Sun, Qingsheng Xia
Software Mentions: 4
Published: almost 8 years ago

10.3389/fgene.2021.666371

A Novel Signature for Predicting Prognosis of Smoking-Related Squamous Cell Carcinoma
Cited by: 4
Author(s): Chang Chen, Xiaoqing Cheng, Shuyan Li, Huanghui Chen, Mengjing Cui, Linlin Bian, Hui Jin
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.101751

miRNA-mRNA crosstalk in myocardial ischemia induced by calcified aortic valve stenosis
Cited by: 12
Author(s): Chenyang Duan, Zhijun Cao, Fuqin Tang, Jian Zhao, Chunshui Liang, Hong Liu, Xiao Ye, Liangming Liu, Rong Ma
Software Mentions: 4
Published: over 7 years ago

10.3389/fgene.2020.563954

Identification of Critical Genes and Proteins for Stent Restenosis Induced by Esophageal Benign Hyperplasia in Esophageal Cancer
Cited by: 4
Author(s): Li Weng, Shanshan Shen, Shaoqiu Wu, Xiaoxing Yin, Bingyan Liu, Ming Shang, Xiaoping Zou, Aiwu Mao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.673192

Immune and Metabolic Dysregulated Coding and Non-coding RNAs Reveal Survival Association in Uterine Corpus Endometrial Carcinoma
Cited by: 1
Author(s): Da Liu, Min Qiu
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.629475

Luminal A Breast Cancer Co-expression Network: Structural and Functional Alterations
Cited by: 11
Author(s): Diana García-Cortés, Enrique Hernández‐Lemus, Jesús Espinal-Enríquez
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.00877

Muscle Transcriptome Analysis Reveals Potential Candidate Genes and Pathways Affecting Intramuscular Fat Content in Pigs
Cited by: 25
Author(s): Xueyan Zhao, Hongmei Hu, Haichao Lin, Wang Cheng, Yanping Wang, Jiying Wang
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.66522

Ketogenic diet restrains aging-induced exacerbation of coronavirus infection in mice
Cited by: 33
Author(s): Seungjin Ryu, Irina Shchukina, Yun‐Hee Youm, Hua Qing, Brandon Hilliard, Tamara Dlugos, Xinbo Zhang, Yuki Yasumoto, Carmen J. Booth, Carlos Fernández‐Hernando, Yajaira Suárez, Kamal M. Khanna, Tamás L. Horváth, Marcelo O Dietrich, Maxim N. Artyomov, Andrew Wang, Vishwa Deep Dixit
Software Mentions: 4
Published: about 5 years ago

10.1186/s40364-021-00302-y

Lower BCL11B expression is associated with adverse clinical outcome for patients with myelodysplastic syndrome
Cited by: 7
Author(s): Xin Huang, Cunte Chen, Mengjun Zhong, Suxia Geng, Yujie Zhao, Minming Li, Chenxin Deng, Lizhi Zeng, Ping Wu, Zhihui Lu, Jianyu Weng, Xin Du, Yangqiu Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.00697

Cross-Species Gene Expression Analysis Reveals Gene Modules Implicated in Human Osteosarcoma
Cited by: 12
Author(s): Zheng Jin, Shanshan Liu, Pei‐Wen Zhu, Mengyan Tang, Yuanxin Wang, Yuan Tian, Li Dong, X. D. Zhu, Dongmei Yan, Zhifeng Zhu
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.11931

Establishment of a ferroptosis-related gene signature for prognosis in lung adenocarcinoma patients
Cited by: 4
Author(s): Jingjing Cai, Chunyan Li, Hongsheng Li, Xiaoxiong Wang, Yunyun Zhou
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.01119

Tumor Characterization in Breast Cancer Identifies Immune-Relevant Gene Signatures Associated With Prognosis
Cited by: 46
Author(s): Jie Li, Cun Liu, Yi Chen, Chundi Gao, Miyuan Wang, Xiaoran Ma, Wenfeng Zhang, Jing Zhuang, Yan Yao
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2020.00427

Bioinformatics Analysis Reveals Biomarkers With Cancer Stem Cell Characteristics in Lung Squamous Cell Carcinoma
Cited by: 38
Author(s): Yi Liao, Hua Xiao, Mengqing Cheng, Xiaoxuan Fan
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.634162

Significance of RNA N6-Methyladenosine Regulators in the Diagnosis and Subtype Classification of Childhood Asthma Using the Gene Expression Omnibus Database
Cited by: 32
Author(s): Bing Dai, Feifei Sun, Xuxu Cai, Chunlu Li, Henan Liu, Yunxiao Shang
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.617350

ceRNA Network Analysis Shows That lncRNA CRNDE Promotes Progression of Glioblastoma Through Sponge mir-9-5p
Cited by: 15
Author(s): Xiaobin Luo, Tianqi Tu, Yali Zhong, Shangyi Xu, Xiangzhou Chen, Ligang Chen, Fubing Yang
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.10933

Tissue-specific transcriptome analysis of drought stress and rehydration in Trachycarpus fortunei at seedling
Cited by: 2
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/6697810

Shared Genetic and Epigenetic Mechanisms between the Osteogenic Differentiation of Dental Pulp Stem Cells and Bone Marrow Stem Cells
Cited by: 14
Author(s): Sebastian Gaus, Hanluo Li, Simin Li, Qian Wang, Tina Kottek, Sebastian Hahnel, Xiangqiong Liu, Yupei Deng, Dirk Ziebolz, Rainer Haak, Gerhard Schmalz, Lei Liu, Vuk Savković, Bernd Lethaus
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/6656943

Glial Cell-Derived Neurotrophic Factor Functions as a Potential Candidate Gene in Obstructive Sleep Apnea Based on a Combination of Bioinformatics and Targeted Capture Sequencing Analyses
Cited by: 3
Author(s): Yuanyuan Cao, Qing Zhu, Xintian Cai, Ting Wu, Xiayire Aierken, Ayguzal Ahmat, Shasha Li, Nanfang Li
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.57274

Estrogen exacerbates mammary involution through neutrophil-dependent and -independent mechanism
Cited by: 14
Author(s): Chew Leng Lim, Yu Zuan Or, Zoe Ong, Hwa Hwa Chung, Hirohito Hayashi, Smeeta Shrestha, Shunsuke Chiba, Feng Lin, Valerie Chun Ling Lin
Software Mentions: 4
Published: about 6 years ago

10.1186/s12967-021-02804-7

Cerebrospinal fluid cells immune landscape in multiple sclerosis
Cited by: 11
Author(s): Zijian Li, Yongchao Liu, Aili Jia, Yueran Cui, Juan Feng
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.680413

Identification of a Prognostic Signature for Ovarian Cancer Based on the Microenvironment Genes
Cited by: 9
Author(s): Xiao Huo, Hengzi Sun, Shuangwu Liu, Bing Liang, Huimin Bai, Shuzhen Wang, Shuhong Li
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.202943

Identification of key pathways and genes in carotid atherosclerosis through bioinformatics analysis of RNA-seq data
Cited by: 2
Author(s): Zhongchen Li, Jiheng Hao, Kun Chen, Qunlong Jiang, Peijian Wang, Xiaohui Xing, Jiyue Wang, Yinjiang Zhang, Yi Xiao, Liyong Zhang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-021-01834-x

High expression of CDCA7 predicts poor prognosis for clear cell renal cell carcinoma and explores its associations with immunity
Cited by: 12
Author(s): Shouyong Liu, Yi Wang, Chenkui Miao, Zengjun Wang
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/3275315

Next-Generation Sequencing Characterizes the Landscape of Somatic Mutations and Pathways in Metastatic Bile Tract Carcinoma
Cited by: 1
Author(s): Qi Li, Qifan Zhang, Xiangdong Cheng, Xie Weng, Mian Chen, Xiaoyun Hu, Jing Huang, Jinzhang Chen
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0234986

Molecular analyses of glioblastoma stem-like cells and glioblastoma tissue
Cited by: 7
Author(s): Marco Wallenborn, Leiming Xu, Holger Kirsten, Leili Rohani, Daniela Rudolf, Peter Ahnert, Christian Schmidt, R. Schulz, Mandy Richter, Wolfgang Krupp, Wolf Mueller, Adiv A. Johnson, Jürgen Meixensberger, Heidrun Holland
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.65979

Unbiased identification of novel transcription factors in striatal compartmentation and striosome maturation
Cited by: 8
Author(s): Maria-Daniela Cirnaru, Sicheng Song, Kizito-Tshitoko Tshilenge, Chuhyon Corwin, Justyna Mleczko, Carlos Galicia Aguirre, Houda Benlhabib, Jaroslav Bendl, Pasha Apontes, John F. Fullard, Jordi Creus-Muncunill, Azadeh Reyahi, Ali Moussavi Nik, Peter Carlsson, Panos Roussos, Sean D. Mooney, Lisa M. Ellerby, Michelle E. Ehrlich
Software Mentions: 4
Published: almost 5 years ago

10.1042/BSR20194337

Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22052276

Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment
Cited by: 4
Author(s): Viktoria Fuhr, Ehsan Vafadarnejad, Oliver Dietrich, Panagiota Arampatzi, Angela Riedel, Antoine‐Emmanuel Saliba, Andreas Rosenwald, Hilka Rauert-Wunderlich
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13030577

Optimizing the Procedure to Manufacture Clinical-Grade NK Cells for Adoptive Immunotherapy
Cited by: 16
Author(s): Adrián Fernández, Alfonso Navarro-Zapata, Adela Escudero, Nerea Matamala, Beatriz Ruz-Caracuel, Isabel Mirones, Alicia Pernas, Marta Cobo, Gema Casado, Diego Lanzarot, Carlos Rodríguez-Antolín, María Vela, Cristina Ferreras, Carmen Mestre, Aurora Viejo, Alejandra Leivas, Javier Martı́nez, Lucía Fernández, Antonio Pérez‐Martínez
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.61798

Enhancing mitochondrial activity in neurons protects against neurodegeneration in a mouse model of multiple sclerosis
Cited by: 32
Author(s): Sina Cathérine Rosenkranz, Artem Shaposhnykov, Simone Träger, Jan Broder Engler, Maarten E. Witte, Vanessa Roth, Vanessa Vieira, Nanne J. Paauw, Simone Bauer, Celina Schwencke-Westphal, Charlotte Schubert, Lukas Can Bal, Benjamin Schattling, Ole Pleß, Jack van Horssen, Marc Freichel, Manuel A. Friese
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.202901

High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
Cited by: 12
Author(s): Kongfei Li, Lieguang Chen, Hua Zhang, Lu Wang, Keya Sha, Xiaohong Du, Daiyang Li, Zhong-Zheng Zheng, Renzhi Pei, Ying Lu, Hongyan Tong
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8873

Bioinformatics analyses of retinoblastoma reveal the retinoblastoma progression subtypes
Cited by: 6
Author(s): Manjing Cao, Sha Wang, Jing Zou, Wanpeng Wang
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.56221

Ageing compromises mouse thymus function and remodels epithelial cell differentiation
Cited by: 83
Author(s): Jeanette Baran-Gale, Michael D. Morgan, Stefano Maio, Fatima Dhalla, Irene Calvo‐Asensio, Mary E. Deadman, Adam E. Handel, Ashley Maynard, Steven Chen, Foad Green, Rene Sit, Norma Neff, Spyros Darmanis, Weilun Tan, Andy P May, John C. Marioni, Chris P. Ponting, Georg A. Holländer
Software Mentions: 4
Published: about 6 years ago

10.1038/s41388-020-01429-2

Androgen receptor signaling regulates the transcriptome of prostate cancer cells by modulating global alternative splicing
Cited by: 21
Author(s): Kalpit Shah, Teresa Gagliano, L. H. Garland, Timothy O’Hanlon, Daria Bortolotti, Valentina Gentili, Roberta Rizzo, Georgios Giamas, Michael Dean
Software Mentions: 4
Published: about 6 years ago

10.1038/s41388-019-1005-1

Identifying functions and prognostic biomarkers of network motifs marked by diverse chromatin states in human cell lines
Cited by: 12
Author(s): Li Wang, Hongying Zhao, Jing Li, Yingqi Xu, Yujia Lan, Wenkang Yin, Xiaoqin Liu, Lei Yu, Shan Lin, Michael Yifei Du, Xia Li, Yun Xiao, Yunpeng Zhang
Software Mentions: 4
Published: almost 7 years ago

10.18632/aging.101847

Integrated DNA methylation and gene expression analysis in the pathogenesis of coronary artery disease
Cited by: 30
Author(s): Miao Liu, Rong Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: over 7 years ago

10.4049/jimmunol.1901358

TNF-α Regulates Human Plasmacytoid Dendritic Cells by Suppressing IFN-α Production and Enhancing T Cell Activation
Cited by: 29
Author(s): Antonios Psarras, Agne Antanaviciute, Adewonuola Alase, Ian Carr, Miriam Wittmann, Paul Emery, George C. Tsokos, Edward M Vital
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203178

Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
Cited by: 1
Author(s): Jinyu Li, Gena Huang, Caixia Ren, Ning Wang, Silei Sui, Zuowei Zhao, Man Li
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers13020205

Concurrent Aspirin Use Is Associated with Improved Outcome in Rectal Cancer Patients Who Undergo Chemoradiation Therapy
Cited by: 2
Author(s): Mark Farrugia, Mark D. Long, David Mattson, L. Flaherty, Bowen Dong, Eduardo Cortes Gomez, Lei Wei, Agnieszka K. Witkiewicz, Song Yao, Paweł Kaliński, Anurag Singh
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13112760

Follow-Up Study Confirms the Presence of Gastric Cancer DNA Methylation Hallmarks in High-Risk Precursor Lesions
Cited by: 3
Author(s): Antonio Gómez, Miguel L Pato, Luís Bujanda, Núria Sala, Osmel Companioni, Ángel Cosme, Martina Tufano, David Hanly, Nadia García, José Miguel Sanz‐Anquela, Javier P. Gisbert, Consuelo López, José Ignacio Elizalde, Míriam Cuatrecasas, Victòria Andreu, María José Paúles, María Dolores Martín-Arranz, Luís Ortega, Elvira Poves, Jesús Barrio, María Ángeles Torres, Guillermo Muñoz, Ángel Ferrández, María José Ramírez‐Lázaro, Sergio Lario, Carlos González, Manel Esteller, María Berdasco
Software Mentions: 4
Published: over 5 years ago

10.7150/ijms.42151

Profiles of Immune Infiltration in Bladder Cancer and its Clinical Significance: an Integrative Genomic Analysis
Cited by: 16
Author(s): Zonglong Wu, Ke-Cheng Zhu, Qinggang Liu, Yaxiao Liu, Lipeng Chen, Jianfeng Cui, Hongda Guo, Nan Zhou, Yao Zhu, Yan Li, Benkang Shi
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.102782

A nomogram combining long non-coding RNA expression profiles and clinical factors predicts survival in patients with bladder cancer
Cited by: 30
Author(s): Yifan Wang, Du Li, Xuemei Yang, Juan Li, Peilong Li, Yinghui Zhao, Weili Duan, Yingjie Chen, Yunshan Wang, Hongzhi Mao, Chuanxin Wang
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.102228

Prognostic value of a hypoxia-related microRNA signature in patients with colorectal cancer
Cited by: 31
Author(s): Yongmei Yang, Ailin Qu, Qi Wu, Xin Zhang, Lili Wang, Chen Li, Zhaogang Dong, Du Li, Chuanxin Wang
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.10437

Comprehensive pathway-related genes signature for prognosis and recurrence of ovarian cancer
Cited by: 1
Author(s): Xinnan Zhao, Miao He
Software Mentions: 4
Published: almost 6 years ago

10.18632/aging.203323

An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
Cited by: 10
Author(s): Bing Qi, Han Liu, Qi Zhou, Ji Li, Xueying Shi, Yu‐Shan Wei, Yinmin Gu, Akio Mizushima, Shilin Xia
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.103127

Identification of HMG-box family establishes the significance of SOX6 in the malignant progression of glioblastoma
Cited by: 7
Author(s): Lan Jiang, Hui Yang, Tianbing Chen, Xiaolong Zhu, Jingjing Ye, Kun Lv
Software Mentions: 4
Published: over 6 years ago

10.3390/cancers13051109

Bacterial, Archaea, and Viral Transcripts (BAVT) Expression in Gynecological Cancers and Correlation with Regulatory Regions of the Genome
Cited by: 6
Author(s): Jesús González Bosquet, Silvana Pedra-Nobre, Eric J. Devor, Kristina W. Thiel, Michael J. Goodheart, David Bender, Kimberly K. Leslie
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12051325

Tumor Cell Associated Hyaluronan-CD44 Signaling Promotes Pro-Tumor Inflammation in Breast Cancer
Cited by: 18
Author(s): Patrice M Witschen, Thomas S. Chaffee, Nicholas J. Brady, Danielle N. Huggins, Todd P. Knutson, Rebecca S. LaRue, Sarah A. Munro, Lyubov Tiegs, James B. McCarthy, Andrew C. Nelson, Kathryn L. Schwertfeger
Software Mentions: 4
Published: over 6 years ago

10.1186/s12957-021-02201-w

Gene coexpression network approach to develop an immune prognostic model for pancreatic adenocarcinoma
Cited by: 5
Author(s): Xing Gu, Qiqi Zhang, Xueying Wu, Yue Fan, Ji Qian
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/3803724

Comprehensive Analysis of m5C RNA Methylation Regulator Genes in Clear Cell Renal Cell Carcinoma
Cited by: 10
Author(s): Jiajin Wu, Chao Hou, Yuhao Wang, Zhongyuan Wang, Pu Li, Zengjun Wang
Software Mentions: 4
Published: almost 5 years ago

10.3390/cancers13163954

Prognostication of Primary Tumor Location in Early-Stage Nodal Diffuse Large B-Cell Lymphoma: An Analysis of the SEER Database
Cited by: 2
Author(s): Yi Xia, Silan Huang, Yu Wang, Dexin Lei, Yanlou Wang, Hang Yang, Yan Gao, Panpan Li
Software Mentions: 4
Published: about 5 years ago

10.1084/jem.20201290

Neuronal metabotropic glutamate receptor 8 protects against neurodegeneration in CNS inflammation
Cited by: 16
Author(s): Marcel S Woo, Friederike Ufer, Nicola Rothammer, Giovanni Di Liberto, Lars Binkle, Undine Haferkamp, Jana K. Sonner, Jan Broder Engler, Sönke Hornig, Simone Bauer, Ingrid Wagner, Kristóf Égervári, Jacob Raber, Robert M. Duvoisin, Ole Pleß, Doron Merkler, Manuel A. Friese
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.103624

POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer
Cited by: 6
Author(s): Jun Q. Lu, Xiaoyan Huang, Yaohui Wang, Jian‐Wei Xie, Jia-Bin Wang, Jiumao Lin, Qi‐Yue Chen, Long‐Long Cao, Ping Li, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13046-019-1254-4

Long noncoding RNA MYOSLID promotes invasion and metastasis by modulating the partial epithelial-mesenchymal transition program in head and neck squamous cell carcinoma
Cited by: 74
Author(s): Hong‐Gang Xiong, Hao Li, Yao Xiao, Qi‐Chao Yang, Leilei Yang, Lei Chen, Lin‐Lin Bu, Wenfeng Zhang, Jiali Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: about 7 years ago

10.1128/mSystems.00384-21

Lactobacillus acidophilus LA14 Alleviates Liver Injury
Cited by: 25
Author(s): Longxian Lv, Chunyan Yao, Yan Ren, Huiyong Jiang, Qiangqiang Wang, Kaicen Wang, Siqi Ren, Shandong Jiang, Jiafeng Xia, Shengjie Li, Ying Yu
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/4348371

DHX36, BAX, and ARPC1B May Be Critical for the Diagnosis and Treatment of Tuberculosis
Cited by: 3
Author(s): Yunli Zhang, Yanming Liu, Hongling Li, Qingxia Liu, Wei Wang, Zijuan Jian, Wenen Liu
Software Mentions: 4
Published: about 6 years ago

10.1186/s12935-019-0975-y

Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer
Cited by: 27
Author(s): Jianming Wei, Jinmiao Wang, Xibo Gao, Feng Qi
Software Mentions: 4
Published: almost 7 years ago

10.3390/cancers12123847

The YAP/TEAD Axis as a New Therapeutic Target in Osteosarcoma: Effect of Verteporfin and CA3 on Primary Tumor Growth
Cited by: 25
Author(s): Sarah Morice, Mathilde Mullard, Régis Brion, Maryne Dupuy, Sarah Renault, Robel Tesfaye, Bénédicte Brounais-Le Royer, Benjamin Ory, Françoise Rédini, Franck Verrecchia
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.7135

Comprehensive analysis of an lncRNA-miRNA-mRNA competing endogenous RNA network in pulpitis
Cited by: 31
Author(s): Fangcao Lei, Han Zhang, Xiaoli Xie
Software Mentions: 4
Published: about 7 years ago

10.3390/plants10050919

Transcriptomic Analysis of Radish (Raphanus sativus L.) Spontaneous Tumor
Cited by: 2
Author(s): А.А. Ткаченко, И. Е. Додуева, Varvara E. Tvorogova, Alexander V. Predeus, Olga Pravdina, Ksenia Kuznetsova, Л. А. Лутова
Software Mentions: 4
Published: over 5 years ago

10.1038/s41380-020-00955-5

Temporal unsnarling of brain’s acute neuroinflammatory transcriptional profiles reveals panendothelitis as the earliest event preceding microgliosis
Cited by: 24
Author(s): Mahesh Chandra Kodali, Hao Chen, Francesca‐Fang Liao
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20211280

Identification of hub genes in colorectal cancer based on weighted gene co-expression network analysis and clinical data from The Cancer Genome Atlas
Cited by: 23
Author(s): Yu Zhang, Jia Luo, Zhe Liu, Xudong Li, Ying Ma, Bohang Zhang, Yuxuan Chen, Xiaofeng Li, Zhi-Guo Feng, Ningning Yang, Dayun Feng, Lei Wang, Xiu–Peng Song
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.102766

Screening and identification of genes associated with cell proliferation in cholangiocarcinoma
Cited by: 1
Author(s): Li Guo, Yaodong Zhang, Zibo Yin, Yaya Ji, Guowei Yang, Bowen Qian, Sunjing Li, Jun Wang, Tingming Liang, Changxian Li, Xiangcheng Li
Software Mentions: 4
Published: over 6 years ago

10.1002/cbf.3491

Identification and functional analysis of long non‐coding RNAs in the synovial membrane of osteoarthritis patients
Cited by: 7
Author(s): Xiaolong Shui, Qipeng Xie, Shaomin Chen, Chengwei Zhou, Jianzhong Kong, Yi Wang
Software Mentions: 4
Published: over 6 years ago

10.3390/plants10040793

Differential Epigenetic Marks Are Associated with Apospory Expressivity in Diploid Hybrids of Paspalum rufum
Cited by: 4
Author(s): Mariano Soliman, Maricel Podio, G. Marconi, Marco Di Marsico, Juan Pablo Amelio Ortiz, Emidio Albertini, Luciana Delgado
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10040769

Transcriptome Analysis of Needle and Root of Pinus Massoniana in Response to Continuous Drought Stress
Cited by: 10
Author(s): Xiaozhou Feng, Zhao Yang, Xiurong Wang, Qiao Li, Jie Ran
Software Mentions: 4
Published: over 5 years ago

10.1186/s13024-019-0351-3

Genetic perturbations of disease risk genes in mice capture transcriptomic signatures of late-onset Alzheimer’s disease
Cited by: 24
Author(s): Ravi S. Pandey, Leah C. Graham, Asli Uyar, Christoph Preuß, Gareth R. Howell, Gregory W. Carter
Software Mentions: 4
Published: almost 7 years ago

10.3906/biy-2005-115

Integration of transcriptomic profile of SARS-CoV-2 infected normal human bronchial epi-thelial cells with metabolic and protein-protein interaction networks
Cited by: 8
Author(s): Hamza Umut Karakurt, Pınar Pir
Software Mentions: 4
Published: about 6 years ago

10.1111/1759-7714.13998

Prognostic value of ferroptosis‐related genes in patients with lung adenocarcinoma
Cited by: 10
Author(s): Guangsheng Zhu, Huang Hua, Songlin Xu, Ruifeng Shi, Zhouyong Gao, Xi Liu, Shuai Zhu, Ning Zhou, Lingling Zu, Ramon Andrade De Mello, Jun Chen, Song Xu
Software Mentions: 4
Published: over 5 years ago

10.1186/s13018-021-02552-w

Study on the potential active components and molecular mechanism of Xiao Huoluo Pills in the treatment of cartilage degeneration of knee osteoarthritis based on bioinformatics analysis and molecular docking technology
Cited by: 13
Author(s): Weijian Chen, Tianye Lin, Qi He, Peng Yang, Gangyu Zhang, Fayi Huang, Zihao Wang, Hao Peng, Baolin Li, Liqing Du, Haibin Wang
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.203168

Cell landscape atlas for patients with chronic thromboembolic pulmonary hypertension after pulmonary endarterectomy constructed using single-cell RNA sequencing
Cited by: 8
Author(s): Ran Miao, Xingbei Dong, Juanni Gong, Yidan Li, Xiaojuan Guo, Jianfeng Wang, Qiang Huang, Ying Wang, Jifeng Li, Suqiao Yang, Tuguang Kuang, Jun Wan, Min Liu, Zhenguo Zhai, Jiuchang Zhong, Yuanhua Yang
Software Mentions: 4
Published: about 5 years ago

10.7150/thno.46142

A panel of eight microRNAs is a good predictive parameter for triple-negative breast cancer relapse
Cited by: 42
Author(s): Hsiao-Chin Hong, Ching-Te Chuang, Wei‐Chih Huang, Shun-Long Weng, Chia-Hung Chen, Kuang-Hsin Chang, Kuang‐Wen Liao, Hsien-Da Huang
Software Mentions: 4
Published: over 6 years ago

10.1186/s13287-019-1245-6

DNA methylation dynamic of bone marrow hematopoietic stem cells after allogeneic transplantation
Cited by: 13
Author(s): Stefania Trino, Pietro Zoppoli, Angelo Michele Carella, Ilaria Laurenzana, Alessandro Weisz, Domenico Memoli, Giovanni Calice, Francesco La Rocca, Vittorio Simeon, Lucia Savino, Luigi Del Vecchio, Pellegrino Musto, Antonella Caivano, Luciana De Luca
Software Mentions: 4
Published: over 7 years ago

10.1186/s13018-021-02578-0

Bioinformatics integrated analysis to investigate candidate biomarkers and associated metabolites in osteosarcoma
Cited by: 3
Author(s): Jun Wang, Mingzhi Gong, Zhenggang Xiong, Yangyang Zhao, Deguo Xing
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-98806-y

Single-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis
Cited by: 36
Author(s): Zhongyi Wang, Adrian Keogh, Annick Waldt, Rachel Cuttat, Marilisa Neri, Shuchai Zhu, Sven Schuierer, Alexandra Ruchti, Christophe Crochemore, Judith Knehr, Julie Bastien, Iwona Ksiazek, Daniel Sánchez-Taltavull, Hui Ge, Jing Wu, Guglielmo Roma, Stephen B. Helliwell, Deborah Stroka, Florian Nigsch
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8050639

The Role of MicroRNAs in the Regulation of Gastric Cancer Stem Cells: A Meta-Analysis of the Current Status
Cited by: 22
Author(s): Vitalba Ruggieri, Sabino Russi, Pietro Zoppoli, Francesco La Rocca, Tiziana Angrisano, Geppino Falco, Giovanni Calice, Simona Laurino
Software Mentions: 4
Published: over 7 years ago

10.1111/jcmm.16831

Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
Cited by: 7
Author(s): Meng Xiao, Chuang Du, Chuanbo Zhang, Xinzhong Zhang, Shaomin Li, Dainan Zhang, Wang Jia
Software Mentions: 4
Published: about 5 years ago

10.1016/j.molmet.2018.09.011

Regulation of glucose uptake and inflammation markers by FOXO1 and FOXO3 in skeletal muscle
Cited by: 35
Author(s): Lars Lundell, Julie Massart, Ali Altıntaş, Anna Krook, Juleen R. Zierath
Software Mentions: 4
Published: over 7 years ago

10.1111/jcmm.16800

Prognostic signature and immune efficacy of m1A‐, m5C‐ and m6A‐related regulators in cutaneous melanoma
Cited by: 20
Author(s): Xian rui Wu, Zheng Chen, Yang Liu, Zi zi Chen, Fengjie Tang, Zhi zhao Chen, Jing Jing Li, Jun Liu, Ke Cao, Xiang Chen, Jianda Zhou
Software Mentions: 4
Published: about 5 years ago

10.1016/j.bbih.2021.100265

Transcriptional profiling of macaque microglia reveals an evolutionary preserved gene expression program
Cited by: 4
Author(s): Marissa Dubbelaar, Chairi Misrielal, Jeffrey J. Bajramović, Saskia M. Burm, Ella A. Zuiderwijk‐Sick, Nieske Brouwer, Corien Grit, Susanne M. Kooistra, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, Hendrikus Boddeke, Bart J. L. Eggen
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.16553

Construction of a SUMOylation regulator‐based prognostic model in low‐grade glioma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11082165

Comprehensive Transcriptomic Comparison between Porcine CD8− and CD8+ Gamma Delta T Cells Revealed Distinct Immune Phenotype
Cited by: 7
Author(s): Sang–Wook Kim, Bee-Oh Lim, Sameer-ul-Salam Mattoo, Eunyoung Oh, Chang-Gi Jeong, Won-Il Kim, Kyung-Tai Lee, Sang-Myeong Lee, Junmo Kim
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.7313

Bioinformatics analysis of microarray data to identify the candidate biomarkers of lung adenocarcinoma
Cited by: 37
Author(s): Tingting Guo, Hongwen Ma, Yuting Zhou
Software Mentions: 4
Published: about 7 years ago

10.1038/s41416-020-0799-5

A novel stratification framework for predicting outcome in patients with prostate cancer
Cited by: 8
Author(s): Bogdan A. Luca, Vincent Moulton, Christopher Ellis, Dylan R. Edwards, Colin Campbell, Rosalin Cooper, Jeremy Clark, Daniel Brewer, Christopher S. Cooper
Software Mentions: 4
Published: over 6 years ago

10.1016/j.molcel.2018.09.023

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery
Cited by: 20
Author(s): Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Fabio Puddu, Samuel Robson, Stephen Jackson, Tony Kouzarides
Software Mentions: 4
Published: almost 8 years ago

10.18632/oncotarget.25596

Role for the transcriptional activator ZRF1 in early metastatic events in breast cancer progression and endocrine resistance
Cited by: 5
Author(s): Ayşegül Öztürk Kaymak, Sergi Sayols, Thaleia Papadopoulou, Holger Richly
Software Mentions: 4
Published: about 8 years ago

10.1155/2021/8834578

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury
Cited by: 3
Author(s): Siyang Wang, Jie Gao, Yiwei Song, Guangyan Cai, Xiangmei Chen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41420-021-00462-8

NR5A2 transcriptional activation by BRD4 promotes pancreatic cancer progression by upregulating GDF15
Cited by: 10
Author(s): Feng Guo, Yingke Zhou, Hui Guo, Dianyun Ren, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41421-020-0157-z

Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in human
Cited by: 119
Author(s): Juanjuan Zhao, Shuye Zhang, Yang Liu, Xiaomeng He, Mengmeng Qu, Gang Xu, Hongbo Wang, Man Huang, Jing Pan, Zhenwen Liu, Zhiwei Li, Lei Liu, Zheng Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/s13041-020-00623-3

Differentiation and localization of interneurons in the developing spinal cord depends on DOT1L expression
Cited by: 6
Author(s): Angelica Gray de Cristoforis, Francesco Ferrari, Frédéric Clotman, Tanja Vogel
Software Mentions: 4
Published: over 6 years ago

10.1186/s12967-020-02372-2

Whole blood transcriptomic investigation identifies long non-coding RNAs as regulators in sepsis
Cited by: 38
Author(s): Lixin Cheng, Chuanchuan Nan, Lin Kang, Ning Zhang, Sheng Liu, Huaisheng Chen, Chengying Hong, Youlian Chen, Zhen Liang, Xueyan Liu
Software Mentions: 4
Published: over 6 years ago

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: over 5 years ago

10.1093/molbev/msab094

Analysis of Fungal Genomes Reveals Commonalities of Intron Gain or Loss and Functions in Intron-Poor Species
Cited by: 17
Author(s): Chun Shen Lim, Brooke N. Weinstein, Scott William Roy, Chris M. Brown
Software Mentions: 4
Published: over 5 years ago

10.31557/APJCP.2020.21.6.1787

Risk Scoring System based on lncRNA Expression for Predicting Survival in Hepatocellular Carcinoma with Cirrhosis
Cited by: 13
Author(s): Jiaxiang Ye, Haixia Li, Jiazhang Wei, Yue Luo, Hongmei Li, Jinyan Zhang, Xi Luo
Software Mentions: 4
Published: over 6 years ago

10.1155/2020/8962090

Identification of Differentially Expressed lncRNAs and mRNAs in Children with Acquired Aplastic Anemia by RNA Sequencing
Cited by: 1
Author(s): Shaoying Lu, Xiaoxiao Song, Jing Chen, Xuguang Qiao
Software Mentions: 4
Published: about 6 years ago

10.1038/s41421-020-00218-1

3D landscape of Hepatitis B virus interactions with human chromatins
Cited by: 20
Author(s): Bo Yang, Boyuan Li, Lingfei Jia, Yongpeng Jiang, Xin Wang, Shaodong Jiang, Shunda Du, Ji Xiong, Pengyuan Yang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009054

Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases
Cited by: 13
Author(s): Elena Díaz-Santiago, Fernando M. Jabato, Elena Rojano, Pedro Seoane, Florencio Pazos, James R. Perkins, Juan A. G. Ranea
Software Mentions: 4
Published: almost 6 years ago

10.1111/jcmm.16221

Expression and prognostic characteristics of m 5 C regulators in low‐grade glioma
Cited by: 11
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/9933136

Identification of Biomarkers for Predicting Allograft Rejection following Kidney Transplantation Based on the Weighted Gene Coexpression Network Analysis
Cited by: 2
Author(s): Lijun Wang, Xiao-Bo Ma, Hongying Xia, Xun Sun, Yu Lu, Qian Yang, Zongqiang Hu, Yi‐Fang Zhao, Wei Hu, Jianghua Ran
Software Mentions: 4
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223