bioconductor: clusterProfiler | Projects

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: over 5 years ago

10.1111/jcmm.16553

Construction of a SUMOylation regulator‐based prognostic model in low‐grade glioma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.16800

Prognostic signature and immune efficacy of m1A‐, m5C‐ and m6A‐related regulators in cutaneous melanoma
Cited by: 20
Author(s): Xian rui Wu, Zheng Chen, Yang Liu, Zi zi Chen, Fengjie Tang, Zhi zhao Chen, Jing Jing Li, Jun Liu, Ke Cao, Xiang Chen, Jianda Zhou
Software Mentions: 4
Published: almost 5 years ago

10.1111/jcmm.16831

Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
Cited by: 7
Author(s): Meng Xiao, Chuang Du, Chuanbo Zhang, Xinzhong Zhang, Shaomin Li, Dainan Zhang, Wang Jia
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8050639

The Role of MicroRNAs in the Regulation of Gastric Cancer Stem Cells: A Meta-Analysis of the Current Status
Cited by: 22
Author(s): Vitalba Ruggieri, Sabino Russi, Pietro Zoppoli, Francesco La Rocca, Tiziana Angrisano, Geppino Falco, Giovanni Calice, Simona Laurino
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms21041518

The Molecular Mechanism of Perillaldehyde Inducing Cell Death in Aspergillus flavus by Inhibiting Energy Metabolism Revealed by Transcriptome Sequencing
Cited by: 18
Author(s): Chao Pan, Yongxin Li, Kunlong Yang, Famous Erhunmwunsee, Yan Ma, Xiaona He, Qingru Geng, Man Liu, Jun Tian
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22010275

The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function
Cited by: 8
Author(s): Yashwanth Subbannayya, Markus Haug, Sneha M. Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T. S. Keshava Prasad, Richard K. Kandasamy
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22052276

Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment
Cited by: 4
Author(s): Viktoria Fuhr, Ehsan Vafadarnejad, Oliver Dietrich, Panagiota Arampatzi, Angela Riedel, Antoine‐Emmanuel Saliba, Andreas Rosenwald, Hilka Rauert-Wunderlich
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22052481

Differential Morpho-Physiological and Transcriptomic Responses to Heat Stress in Two Blueberry Species
Cited by: 5
Author(s): Jodi B Callwood, Kalpalatha Melmaiee, Krishnanand P. Kulkarni, Amaranatha R. Vennapusa, Diarra Aicha, Michael J. Moore, Nicholi Vorsa, Purushothaman Natarajan, Umesh K. Reddy, Sathya Elavarthi
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/3275315

Next-Generation Sequencing Characterizes the Landscape of Somatic Mutations and Pathways in Metastatic Bile Tract Carcinoma
Cited by: 1
Author(s): Qi Li, Qifan Zhang, Xiangdong Cheng, Xie Weng, Mian Chen, Xiaoyun Hu, Jing Huang, Jinzhang Chen
Software Mentions: 4
Published: almost 6 years ago

10.1155/2021/4338838

A Radioresponse-Related lncRNA Biomarker Signature for Risk Classification and Prognosis Prediction in Non-Small-Cell Lung Cancer
Cited by: 14
Author(s): Jiahang Song, Shuming Zhang, Yuanyuan Sun, Junjie Gu, Ziqi Ye, Xinchen Sun, Qiyun Tang
Software Mentions: 4
Published: over 4 years ago

10.1155/2020/3656841

Genetic Profiles Playing Opposite Roles of Pathogenesis in Schizophrenia and Glioma
Cited by: 3
Author(s): Yujie Wen, Zhiwei Xia, Dongjie Li, Quan Cheng, Qing Zhao, Hui Cao
Software Mentions: 4
Published: about 6 years ago

10.1155/2021/5345181

Prognostic Implications of Immune-Related Gene Pairs Signatures in Bladder Cancer
Cited by: 3
Author(s): Hui Xiong, Hui Gao, Jinding Hu, Ying Dai, Hanbo Wang, Min Fu, Taiguo Qi, Lianjun Li, Qinghua Xia, Xunbo Jin, Zilian Cui, Weiting Kang
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/1814266

Gene Model Related to m6A Predicts the Prognostic Effect of Immune Infiltration on Head and Neck Squamous Cell Carcinoma
Cited by: 3
Author(s): Yaxiong Deng, Kehua Li, Fengwu Tan, Hanbo Liu
Software Mentions: 4
Published: almost 5 years ago

10.1155/2019/1785042

Low GAS5 Levels as a Predictor of Poor Survival in Patients with Lower-Grade Gliomas
Cited by: 18
Author(s): Yanfang Wang, Xin Shan, Kai Zhang, Run Shi, Xuanwen Bao
Software Mentions: 4
Published: over 7 years ago

10.1186/s13048-017-0323-6

Bioinformatics analysis to screen the key prognostic genes in ovarian cancer
Cited by: 26
Author(s): Li Li, Shengyun Cai, Shengnan Liu, Hao Feng, Junjie Zhang
Software Mentions: 4
Published: about 9 years ago

10.18632/oncotarget.13169

Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing
Cited by: 6
Author(s): Yuan Li, Mei Luo, Xuejiao Shi, Zhiliang Lu, Shengrong Sun, Jianbing Huang, Zhaoli Chen, Jié He
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.16118

Whole-genome expression analyses of type 2 diabetes in human skin reveal altered immune function and burden of infection
Cited by: 23
Author(s): Wang Chun, Xiaopan Chen, Jing Shu, Chun-Ting Lee
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.22423

Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome
Cited by: 2
Author(s): Shana Claeys, Geertrui Denecker, Robrecht Cannoodt, Candy Kumps, Kaat Durinck, Franki Speleman, Katleen De Preter
Software Mentions: 4
Published: over 8 years ago

10.18632/oncotarget.25596

Role for the transcriptional activator ZRF1 in early metastatic events in breast cancer progression and endocrine resistance
Cited by: 5
Author(s): Ayşegül Öztürk Kaymak, Sergi Sayols, Thaleia Papadopoulou, Holger Richly
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13018-021-02578-0

Bioinformatics integrated analysis to investigate candidate biomarkers and associated metabolites in osteosarcoma
Cited by: 3
Author(s): Jun Wang, Mingzhi Gong, Zhenggang Xiong, Yangyang Zhao, Deguo Xing
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13018-021-02552-w

Study on the potential active components and molecular mechanism of Xiao Huoluo Pills in the treatment of cartilage degeneration of knee osteoarthritis based on bioinformatics analysis and molecular docking technology
Cited by: 13
Author(s): Weijian Chen, Tianye Lin, Qi He, Peng Yang, Gangyu Zhang, Fayi Huang, Zihao Wang, Hao Peng, Baolin Li, Liqing Du, Haibin Wang
Software Mentions: 4
Published: almost 5 years ago

10.1515/med-2020-0142

An immune-relevant signature of nine genes as a prognostic biomarker in patients with gastric carcinoma
Cited by: 1
Author(s): Bing Wang, Yang Zhang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12967-020-02372-2

Whole blood transcriptomic investigation identifies long non-coding RNAs as regulators in sepsis
Cited by: 38
Author(s): Lixin Cheng, Chuanchuan Nan, Lin Kang, Ning Zhang, Sheng Liu, Huaisheng Chen, Chengying Hong, Youlian Chen, Zhen Liang, Xueyan Liu
Software Mentions: 4
Published: about 6 years ago

10.1186/s12967-021-02804-7

Cerebrospinal fluid cells immune landscape in multiple sclerosis
Cited by: 11
Author(s): Zijian Li, Yongchao Liu, Aili Jia, Yueran Cui, Juan Feng
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers12051325

Tumor Cell Associated Hyaluronan-CD44 Signaling Promotes Pro-Tumor Inflammation in Breast Cancer
Cited by: 18
Author(s): Patrice M Witschen, Thomas S. Chaffee, Nicholas J. Brady, Danielle N. Huggins, Todd P. Knutson, Rebecca S. LaRue, Sarah A. Munro, Lyubov Tiegs, James B. McCarthy, Andrew C. Nelson, Kathryn L. Schwertfeger
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2020.586820

Tumor Derived SIGLEC Family Genes May Play Roles in Tumor Genesis, Progression, and Immune Microenvironment Regulation
Cited by: 14
Author(s): Chen Zheng, Ming Yu, Lei Guo, Bo Zhang, Shuang Liu, Wentao Zhang, Bing Zhou, Jiuliang Yan, Qianni Ma, Zhixu Yang, Xiao Ye, Yongfeng Xu, Hui Li, Qing–Hai Ye
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-80682-7

TIM29 is required for enhanced stem cell activity during regeneration in the flatworm Macrostomum lignano
Cited by: 2
Author(s): Stijn Mouton, Kirill Ustyantsev, Frank W. Beltman, Lisa Glazenburg, Eugène Berezikov
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-80158-8

Gene expression in blood reflects smoking exposure among cancer-free women in the Norwegian Women and Cancer (NOWAC) postgenome cohort
Cited by: 6
Author(s): Nikita Baiju, Torkjel M. Sandanger, Pål Sætrom, Therese Haugdahl Nøst
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-020-6541-0

iREAD: a tool for intron retention detection from RNA-seq data
Cited by: 33
Author(s): Hong Dong Li, Cory C. Funk, Nathan D. Price
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-79552-z

Host mitochondrial transcriptome response to SARS-CoV-2 in multiple cell models and clinical samples
Cited by: 45
Author(s): Brendan Miller, Ana R. Silverstein, Melanie Flores, Kevin Cao, Hiroshi Kumagai, Hemal H. Mehta, Kelvin Yen, Su Jeong Kim, Pinchas Cohen
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/9031723

Identification and Analysis of Estrogen Receptor α Promoting Tamoxifen Resistance-Related lncRNAs
Cited by: 11
Author(s): Xiulei Zhang, Shanjun Gao, Zhen Li, Wei Wang, Guangzhi Liu
Software Mentions: 4
Published: about 6 years ago

10.3389/fonc.2021.714267

M6A Classification Combined With Tumor Microenvironment Immune Characteristics Analysis of Bladder Cancer
Cited by: 12
Author(s): Huili Zhu, Xiaocan Jia, Yuping Wang, Zhijuan Song, Nana Wang, Yongli Yang, Xiaoguang Shi
Software Mentions: 4
Published: almost 5 years ago

10.1155/2020/4612158

CCNB2, TOP2A, and ASPM Reflect the Prognosis of Hepatocellular Carcinoma, as Determined by Weighted Gene Coexpression Network Analysis
Cited by: 9
Author(s): Yuping Zeng, He He, Yu Zhang, Xia Wang, Yang Lin-de, Zhenmei An
Software Mentions: 4
Published: almost 6 years ago

10.1155/2020/3416807

Identification of Hub Genes as Biomarkers Correlated with the Proliferation and Prognosis in Lung Cancer: A Weighted Gene Co-Expression Network Analysis
Cited by: 2
Author(s): Xuting Xu, Limin Xu, Huilian Huang, Jing Li, Shunli Dong, Lili Jin, Zhiyong Ma, Liqin Li
Software Mentions: 4
Published: about 6 years ago

10.1155/2019/1093815

Exploring the Pathological Mechanism of Bladder Cancer Based on Tumor Mutational Burden Analysis
Cited by: 9
Author(s): Yao Ma, Xiaofei Feng, Wan-Xia Yang, Chongge You
Software Mentions: 4
Published: almost 7 years ago

10.1155/2020/9143695

Identification of Prognosis-Related Genes in Bladder Cancer Microenvironment across TCGA Database
Cited by: 7
Author(s): Xin Zhao, Yu Tang, Haoyu Ren, Yi Lei
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: over 5 years ago

10.1186/s13046-019-1254-4

Long noncoding RNA MYOSLID promotes invasion and metastasis by modulating the partial epithelial-mesenchymal transition program in head and neck squamous cell carcinoma
Cited by: 74
Author(s): Hong‐Gang Xiong, Hao Li, Yao Xiao, Qi‐Chao Yang, Leilei Yang, Lei Chen, Lin‐Lin Bu, Wenfeng Zhang, Jiali Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: almost 7 years ago

10.1155/2021/6648182

L Antigen Family Member 3 Serves as a Prognostic Biomarker for the Clinical Outcome and Immune Infiltration in Skin Cutaneous Melanoma
Cited by: 4
Author(s): Jingjing Song, Cong Jin, Endong Chen, Xubin Dong, Li Zhu
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13163954

Prognostication of Primary Tumor Location in Early-Stage Nodal Diffuse Large B-Cell Lymphoma: An Analysis of the SEER Database
Cited by: 2
Author(s): Yi Xia, Silan Huang, Yu Wang, Dexin Lei, Yanlou Wang, Hang Yang, Yan Gao, Panpan Li
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2021.745277

Chromobox Homolog 8 (CBX8) in Human Tumor Carcinogenesis and Prognosis: A Pancancer Analysis Using Multiple Databases
Cited by: 4
Author(s): Dongjie Shi, Lei Ao, Hua Yu, Yongzhi Xia, Juan Li, Wenjie Zhong, Haijian Xia
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-94701-8

Integrative analysis reveals the prognostic value and functions of splicing factors implicated in hepatocellular carcinoma
Cited by: 7
Author(s): Yue Wang, Fan Yang, Jiaqi Shang, Hai‐Tao He, Qing Yang
Software Mentions: 4
Published: almost 5 years ago

10.18632/aging.202901

High expression of COMMD7 is an adverse prognostic factor in acute myeloid leukemia
Cited by: 12
Author(s): Kongfei Li, Lieguang Chen, Hua Zhang, Lu Wang, Keya Sha, Xiaohong Du, Daiyang Li, Zhong-Zheng Zheng, Renzhi Pei, Ying Lu, Hongyan Tong
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/9933136

Identification of Biomarkers for Predicting Allograft Rejection following Kidney Transplantation Based on the Weighted Gene Coexpression Network Analysis
Cited by: 2
Author(s): Lijun Wang, Xiao-Bo Ma, Hongying Xia, Xun Sun, Yu Lu, Qian Yang, Zongqiang Hu, Yi‐Fang Zhao, Wei Hu, Jianghua Ran
Software Mentions: 4
Published: almost 5 years ago

10.1155/2020/8962090

Identification of Differentially Expressed lncRNAs and mRNAs in Children with Acquired Aplastic Anemia by RNA Sequencing
Cited by: 1
Author(s): Shaoying Lu, Xiaoxiao Song, Jing Chen, Xuguang Qiao
Software Mentions: 4
Published: almost 6 years ago

10.1084/jem.20201290

Neuronal metabotropic glutamate receptor 8 protects against neurodegeneration in CNS inflammation
Cited by: 16
Author(s): Marcel S Woo, Friederike Ufer, Nicola Rothammer, Giovanni Di Liberto, Lars Binkle, Undine Haferkamp, Jana K. Sonner, Jan Broder Engler, Sönke Hornig, Simone Bauer, Ingrid Wagner, Kristóf Égervári, Jacob Raber, Robert M. Duvoisin, Ole Pleß, Doron Merkler, Manuel A. Friese
Software Mentions: 4
Published: over 5 years ago

10.1155/2021/8834578

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury
Cited by: 3
Author(s): Siyang Wang, Jie Gao, Yiwei Song, Guangyan Cai, Xiangmei Chen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-70540-x

Identification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis
Cited by: 16
Author(s): Shumei Tang, Xiufen Wang, Tianci Deng, Huipeng Ge, Xiangcheng Xiao
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2020.00707

Construction and Validation of an Autophagy-Related Prognostic Risk Signature for Survival Predicting in Clear Cell Renal Cell Carcinoma Patients
Cited by: 12
Author(s): Huiying Yang, Mengjiao Han, Hua Li
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-68373-9

Increased predominance of the matured ventricular subtype in embryonic stem cell-derived cardiomyocytes in vivo
Cited by: 22
Author(s): Hajime Ichimura, Shin Kadota, Toshihide Kashihara, Mitsuhiko Yamada, Kyoko Ito, Hideki Kobayashi, Yuki Tanaka, Naoko Shiba, Shinichiro Chuma, Shugo Tohyama, Takashi Seto, Kenji Okada, Koichiro Kuwahara, Yuji Shiba
Software Mentions: 4
Published: almost 6 years ago

10.3390/cancers12123847

The YAP/TEAD Axis as a New Therapeutic Target in Osteosarcoma: Effect of Verteporfin and CA3 on Primary Tumor Growth
Cited by: 25
Author(s): Sarah Morice, Mathilde Mullard, Régis Brion, Maryne Dupuy, Sarah Renault, Robel Tesfaye, Bénédicte Brounais-Le Royer, Benjamin Ory, Françoise Rédini, Franck Verrecchia
Software Mentions: 4
Published: over 5 years ago

10.1042/BSR20211280

Identification of hub genes in colorectal cancer based on weighted gene co-expression network analysis and clinical data from The Cancer Genome Atlas
Cited by: 23
Author(s): Yu Zhang, Jia Luo, Zhe Liu, Xudong Li, Ying Ma, Bohang Zhang, Yuxuan Chen, Xiaofeng Li, Zhi-Guo Feng, Ningning Yang, Dayun Feng, Lei Wang, Xiu–Peng Song
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-66556-y

WNT and inflammatory signaling distinguish human Fallopian tube epithelial cell populations
Cited by: 9
Author(s): Ian M. Rose, Mallikarjun Bidarimath, Alex Webster, Andrew K. Godwin, Andrea Flesken‐Nikitin, Alexander Yu. Nikitin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-61273-y

Comprehensive transcriptome profiling of Taiwanese colorectal cancer implicates an ethnic basis for pathogenesis
Cited by: 8
Author(s): Shao‐Min Wu, Wen‐Sy Tsai, Sum-Fu Chiang, Yi-Hsuan Lai, Chung‐Pei Ma, Jianhua Wang, Jeng-Feng Lin, Pei-Shan Lu, Chao-Ping Yang, Bertrand Chin‐Ming Tan, Hsuan Liu
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.101847

Integrated DNA methylation and gene expression analysis in the pathogenesis of coronary artery disease
Cited by: 30
Author(s): Miao Liu, Rong Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: over 7 years ago

10.1042/BSR20194337

Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-019-5970-0

Single-cell RNA-seq of esophageal squamous cell carcinoma cell line with fractionated irradiation reveals radioresistant gene expression patterns
Cited by: 22
Author(s): Ling Yang, Xiaoyan Zhang, Qiang Hou, Ming Huang, Hongfang Zhang, Zhenzhen Jiang, Jing Yue, Shixiu Wu
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcell.2021.691676

A Novel Risk Model Based on Lipid Metabolism-Associated Genes Predicts Prognosis and Indicates Immune Microenvironment in Breast Cancer
Cited by: 13
Author(s): Zhimin Ye, Shengmei Zou, Zhiyuan Niu, Zhijie Xu, Yongbin Hu
Software Mentions: 4
Published: about 5 years ago

10.18632/aging.203178

Identification of differentially expressed genes-related prognostic risk model for survival prediction in breast carcinoma patients
Cited by: 1
Author(s): Jinyu Li, Gena Huang, Caixia Ren, Ning Wang, Silei Sui, Zuowei Zhao, Man Li
Software Mentions: 4
Published: almost 5 years ago

10.1042/BSR20203459

CXCL10 is a potential biomarker and associated with immune infiltration in human papillary thyroid cancer
Cited by: 10
Author(s): Xiaojing Qin, Lin Xu, Guoqiang Xue, Huiying Fan, Haoyu Wang, Jing Wu, Da Pei
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.699385

Analysis of Immune–Stromal Score-Based Gene Signature and Molecular Subtypes in Osteosarcoma: Implications for Prognosis and Tumor Immune Microenvironment
Cited by: 3
Author(s): Dingzhao Zheng, Kai-Chun Yang, Xinjiang Chen, Yongwu Li, Yongchun Chen
Software Mentions: 4
Published: over 4 years ago

10.18632/aging.102782

A nomogram combining long non-coding RNA expression profiles and clinical factors predicts survival in patients with bladder cancer
Cited by: 30
Author(s): Yifan Wang, Du Li, Xuemei Yang, Juan Li, Peilong Li, Yinghui Zhao, Weili Duan, Yingjie Chen, Yunshan Wang, Hongzhi Mao, Chuanxin Wang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-50271-4

Fractional Deletion of Compound Kushen Injection Indicates Cytokine Signaling Pathways are Critical for its Perturbation of the Cell Cycle
Cited by: 9
Author(s): Thazin Nwe Aung, Saeed Nourmohammadi, Zhibo Qu, Yuka Harata-Lee, Jingang Cui, Hao Shen, Andrea J. Yool, Tara L. Pukala, Hongling Du, R. Daniel Kortschak, Wenxin Wei, David L. Adelson
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.664334

Disruption of Circadian Transcriptome in Lung by Acute Sleep Deprivation
Cited by: 6
Author(s): Yuntao Lu, Bing Liu, Junjie Ma, Shuo Yang, Ju Huang
Software Mentions: 4
Published: about 5 years ago

10.1002/btm2.10232

Targeting thymidine phosphorylase as a potential therapy for bone loss associated with periprosthetic osteolysis
Cited by: 11
Author(s): Gen Matsumae, Tomohiro Shimizu, Yuan Tian, Daisuke Takahashi, Taku Ebata, Hend Alhasan, Shunichi Yokota, Ken Kadoya, Mohamad Alaa Terkawi, Norimasa Iwasaki
Software Mentions: 4
Published: about 5 years ago

10.1042/BSR20201491

Exploration of immune-related genes in high and low tumor mutation burden groups of chromophobe renal cell carcinoma
Cited by: 9
Author(s): Lei Li, Xi Chen, Lu Hao, Qiuyan Chen, Haosheng Liu, Qing Zhou
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00401-021-02327-x

Targeting fibroblast growth factor receptors to combat aggressive ependymoma
Cited by: 9
Author(s): Daniela Lötsch, Dominik Kirchhofer, Bernhard Englinger, Li Jiang, Konstantin Okonechnikov, Daniel Senfter, Anna Laemmerer, Lisa Gabler, Christine Pirker, Andrew M. Donson, Peter Bannauer, Pia Korbel, Carola Jaunecker, Jens-Martin Hübner, Lisa Mayr, Sibylle Madlener, Maria Theresa Schmook, Gerda Ricken, Kendra K. Maaß, Michael Grusch, Klaus Holzmann, Bettina Grasl‐Kraupp, Sabine Spiegl-Kreinecker, Jennifer L. Hsu, Christian Dorfer, Karl Rössler, Amedeo A. Azizi, Nicholas Foreman, Andreas Peyrl, Christine Haberler, Thomas Czech, Irene Slavc, Mariella G. Filbin, Kristian W. Pajtler, Marcel Kool, Walter Berger, Johannes Gojo
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/3803724

Comprehensive Analysis of m5C RNA Methylation Regulator Genes in Clear Cell Renal Cell Carcinoma
Cited by: 10
Author(s): Jiajin Wu, Chao Hou, Yuhao Wang, Zhongyuan Wang, Pu Li, Zengjun Wang
Software Mentions: 4
Published: over 4 years ago

10.1002/cbf.3491

Identification and functional analysis of long non‐coding RNAs in the synovial membrane of osteoarthritis patients
Cited by: 7
Author(s): Xiaolong Shui, Qipeng Xie, Shaomin Chen, Chengwei Zhou, Jianzhong Kong, Yi Wang
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.102228

Prognostic value of a hypoxia-related microRNA signature in patients with colorectal cancer
Cited by: 31
Author(s): Yongmei Yang, Ailin Qu, Qi Wu, Xin Zhang, Lili Wang, Chen Li, Zhaogang Dong, Du Li, Chuanxin Wang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-29506-3

Analysis of public RNA-sequencing data reveals biological consequences of genetic heterogeneity in cell line populations
Cited by: 18
Author(s): Erik Fasterius, Cristina Al‐Khalili Szigyarto
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41416-020-0799-5

A novel stratification framework for predicting outcome in patients with prostate cancer
Cited by: 8
Author(s): Bogdan A. Luca, Vincent Moulton, Christopher Ellis, Dylan R. Edwards, Colin Campbell, Rosalin Cooper, Jeremy Clark, Daniel Brewer, Christopher S. Cooper
Software Mentions: 4
Published: about 6 years ago

10.3389/fcell.2021.699263

Spatiotemporal and Functional Heterogeneity of Hematopoietic Stem Cell-Competent Hemogenic Endothelial Cells in Mouse Embryos
Cited by: 5
Author(s): Yunqiao Li, Yandong Gong, Siyuan Hou, Tao Huang, Haizhen Wang, Di Liu, Yanli Ni, Chaojie Wang, Junliang Wang, Jun Hou, Ruihua Yang, Yan Jing, Guangyu Zhang, Bing Liu, Yu Lan
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.bbih.2021.100265

Transcriptional profiling of macaque microglia reveals an evolutionary preserved gene expression program
Cited by: 4
Author(s): Marissa Dubbelaar, Chairi Misrielal, Jeffrey J. Bajramović, Saskia M. Burm, Ella A. Zuiderwijk‐Sick, Nieske Brouwer, Corien Grit, Susanne M. Kooistra, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, Hendrikus Boddeke, Bart J. L. Eggen
Software Mentions: 4
Published: almost 5 years ago

10.3389/fcell.2021.670184

A Novel Ferroptosis-Related Gene Signature for Overall Survival Prediction in Patients With Breast Cancer
Cited by: 18
Author(s): Lizhe Zhu, Qiang Tian, Siyuan Jiang, Huan Gao, Shibo Yu, Yifeng Zhou, Yan Yu, Yu Ren, Jianjun He, Bin Wang
Software Mentions: 4
Published: about 5 years ago

10.1590/1414-431X2021e11363

Dysregulation of KIF14 regulates the cell cycle and predicts poor prognosis in cervical cancer: a study based on integrated approaches
Cited by: 4
Author(s): Xiao Li, Sisi Zhang, Qingyu Zheng, Shuirong Zhang
Software Mentions: 4
Published: over 5 years ago

10.1590/1414-431X2021e11372

Profiles of immune infiltration in abdominal aortic aneurysm and their associated marker genes: a gene expression-based study
Cited by: 5
Author(s): Tan Li, Tianlong Wang, Xin Zhao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41388-020-01429-2

Androgen receptor signaling regulates the transcriptome of prostate cancer cells by modulating global alternative splicing
Cited by: 21
Author(s): Kalpit Shah, Teresa Gagliano, L. H. Garland, Timothy O’Hanlon, Daria Bortolotti, Valentina Gentili, Roberta Rizzo, Georgios Giamas, Michael Dean
Software Mentions: 4
Published: almost 6 years ago

10.1111/cns.13637

A bioisostere of Dimebon/Latrepirdine delays the onset and slows the progression of pathology in FUS transgenic mice
Cited by: 4
Author(s): Kirill Chaprov, Alexander P. Rezvykh, S. Yu. Funikov, Т. А. Иванова, Ekaterina A. Lysikova, Alexey V. Deykin, Michail S. Kukharsky, А. Yu. Aksinenko, С. О. Бачурин, Natalia Ninkina, Vladimir L. Buchman
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/4348371

DHX36, BAX, and ARPC1B May Be Critical for the Diagnosis and Treatment of Tuberculosis
Cited by: 3
Author(s): Yunli Zhang, Yanming Liu, Hongling Li, Qingxia Liu, Wei Wang, Zijuan Jian, Wenen Liu
Software Mentions: 4
Published: almost 6 years ago

10.1155/2021/6697810

Shared Genetic and Epigenetic Mechanisms between the Osteogenic Differentiation of Dental Pulp Stem Cells and Bone Marrow Stem Cells
Cited by: 14
Author(s): Sebastian Gaus, Hanluo Li, Simin Li, Qian Wang, Tina Kottek, Sebastian Hahnel, Xiangqiong Liu, Yupei Deng, Dirk Ziebolz, Rainer Haak, Gerhard Schmalz, Lei Liu, Vuk Savković, Bernd Lethaus
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-021-01834-x

High expression of CDCA7 predicts poor prognosis for clear cell renal cell carcinoma and explores its associations with immunity
Cited by: 12
Author(s): Shouyong Liu, Yi Wang, Chenkui Miao, Zengjun Wang
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.203323

An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
Cited by: 10
Author(s): Bing Qi, Han Liu, Qi Zhou, Ji Li, Xueying Shi, Yu‐Shan Wei, Yinmin Gu, Akio Mizushima, Shilin Xia
Software Mentions: 4
Published: almost 5 years ago

10.3389/fonc.2020.589168

NFATC2 Modulates Radiation Sensitivity in Dermal Fibroblasts From Patients With Severe Side Effects of Radiotherapy
Cited by: 0
Author(s): Joshua Dulong, Clara Kouakou, Yasmina Mesloub, Julie Rorteau, Sandra Moratille, Fabien Chevalier, Tatiana Vinasco-Sandoval, Michèle Martin, Jérôme Lamartine
Software Mentions: 4
Published: over 5 years ago

10.1186/s12935-018-0681-1

Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumors
Cited by: 6
Author(s): Yanming Ren, Chuanmin Tao, Xiliang Wang, Yan Ju
Software Mentions: 4
Published: over 7 years ago

10.1186/s12935-021-01833-y

Systematic analysis of the expression and prognosis relevance of FBXO family reveals the significance of FBXO1 in human breast cancer
Cited by: 17
Author(s): Yaqian Liu, Bo Pan, Weikun Qu, Yilong Cao, Jun Li, Hailin Zhao
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.566918

Transcriptomic Analysis of Glycolysis-Related Genes Reveals an Independent Signature of Bladder Carcinoma
Cited by: 3
Author(s): Zezhong Mou, Chen Yang, Zheyu Zhang, Siqi Wu, Chenyang Xu, Cheng Zhang, Xiaoming Dai, Xinan Chen, Yuxi Ou, Haowen Jiang
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.00615

Long Non-coding RNA LINC02195 as a Regulator of MHC I Molecules and Favorable Prognostic Marker for Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Hao Li, Hong‐Gang Xiong, Yao Xiao, Qi‐Chao Yang, Shao‐Chen Yang, Hongchao Tang, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: about 6 years ago

10.1038/s41597-020-00772-z

A gene expression atlas for different kinds of stress in the mouse brain
Cited by: 27
Author(s): Tiziano Flati, Silvia Gioiosa, Giovanni Chillemi, Andrea Mele, Alberto Oliverio, Cecilia Mannironi, Arianna Rinaldi, Tiziana Castrignanò
Software Mentions: 4
Published: over 5 years ago

10.18632/aging.103127

Identification of HMG-box family establishes the significance of SOX6 in the malignant progression of glioblastoma
Cited by: 7
Author(s): Lan Jiang, Hui Yang, Tianbing Chen, Xiaolong Zhu, Jingjing Ye, Kun Lv
Software Mentions: 4
Published: about 6 years ago

10.1186/s12935-019-0975-y

Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer
Cited by: 27
Author(s): Jianming Wei, Jinmiao Wang, Xibo Gao, Feng Qi
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.202173

A novel immune-related genes prognosis biomarker for hepatocellular carcinoma
Cited by: 7
Author(s): Kunpeng Wang, Xinyi Chen, Chong Jin, Jinggang Mo, Hao Jiang, Bin Yi, Xiang Chen
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.628608

Upregulation of Long Non-Coding RNA GCC2-AS1 Facilitates Malignant Phenotypes and Correlated With Unfavorable Prognosis for Lung Adenocarcinoma
Cited by: 6
Author(s): Fengqiang Yu, Mingqiang Liang, Weidong Wu, Yu Huang, Juanjuan Zheng, Bin Zheng, Chun Chen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2020.605623

Long Non-coding RNA BTG3-7:1 and JUND Co-regulate C21ORF91 to Promote Triple-Negative Breast Cancer Progress
Cited by: 0
Author(s): Dan Zheng, Xiujing He, Ting Luo, Xiaorong Zhong, Hong Zheng, Jiqiao Yang, Yanchu Li, Jing Jing
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2019.00712

Prognostic lncRNAs, miRNAs, and mRNAs Form a Competing Endogenous RNA Network in Colon Cancer
Cited by: 33
Author(s): Qianrong Huang, Xin-Bin Pan
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12931-020-01544-4

Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0
Cited by: 6
Author(s): Espen E. Groth, Melanie Weber, Thomas Bahmer, Frauke Pedersen, Anne Kirsten, Daniela Börnigen, Klaus F. Rabe, Henrik Watz, Ole Ammerpohl, Torsten Goldmann
Software Mentions: 4
Published: over 5 years ago

10.1186/s12986-019-0366-3

A novel lncRNA-miRNA-mRNA triple network identifies lncRNA TWF1 as an important regulator of miRNA and gene expression in coronary artery disease
Cited by: 15
Author(s): Miao Liu, Rui-Xing Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: about 7 years ago

10.21203/rs.3.rs-539712/v1

Plasma Proteomics of COVID-19 Associated Cardiovascular Complications: Implications for Pathophysiology and Therapeutics
Cited by: 2
Author(s): Jason D. Roh, Robert Kitchen, James S. Guseh, Jenna McNeill, Malika Aïd, Amanda J. Martinot, Andy Yu, Colin Platt, James Rhee, Brittany Weber, Lena Trager, Margaret H. Hastings, Sarah Ducat, Peng Xia, Claire Castro, Bjarni Atlason, Timothy W. Churchill, Marcelo Di Carli, Patrick T. Ellinor, Dan H. Barouch, Jennifer E. Ho, Anthony Rosenzweig
Software Mentions: 4
Published: about 5 years ago

10.1186/s12935-020-01352-2

Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
Cited by: 19
Author(s): Naiqiang Zhu, Jingyi Hou, Guiyun Ma, Shuai Guo, Chengliang Zhao, Bin Chen
Software Mentions: 4
Published: almost 6 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223