bioconductor: clusterProfiler | Projects

10.1590/1414-431X2021e11363

Dysregulation of KIF14 regulates the cell cycle and predicts poor prognosis in cervical cancer: a study based on integrated approaches
Cited by: 4
Author(s): Xiao Li, Sisi Zhang, Qingyu Zheng, Shuirong Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1590/1414-431X2021e11372

Profiles of immune infiltration in abdominal aortic aneurysm and their associated marker genes: a gene expression-based study
Cited by: 5
Author(s): Tan Li, Tianlong Wang, Xin Zhao
Software Mentions: 4
Published: almost 4 years ago

10.7150/jca.52105

Identification of the hub genes and prognostic indicators of gastric cancer and correlation of indicators with tumor-infiltrating immune cell levels
Cited by: 4
Author(s): Yun Ji, Lu Gao, Can Zhang, Xu Sun, Liping Dai, Zhenyu Ji, Jianying Zhang, Zhida Zhang, Weimin Cao, Yang Zhao, Liguo Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1155/2021/6648182

L Antigen Family Member 3 Serves as a Prognostic Biomarker for the Clinical Outcome and Immune Infiltration in Skin Cutaneous Melanoma
Cited by: 4
Author(s): Jingjing Song, Cong Jin, Endong Chen, Xubin Dong, Li Zhu
Software Mentions: 4
Published: over 3 years ago

10.1111/cns.13637

A bioisostere of Dimebon/Latrepirdine delays the onset and slows the progression of pathology in FUS transgenic mice
Cited by: 4
Author(s): Kirill Chaprov, Alexander P. Rezvykh, S. Yu. Funikov, Т. А. Иванова, Ekaterina A. Lysikova, Alexey V. Deykin, Michail S. Kukharsky, А. Yu. Aksinenko, С. О. Бачурин, Natalia Ninkina, Vladimir L. Buchman
Software Mentions: 4
Published: over 3 years ago

10.1155/2020/4348371

DHX36, BAX, and ARPC1B May Be Critical for the Diagnosis and Treatment of Tuberculosis
Cited by: 3
Author(s): Yunli Zhang, Yanming Liu, Hongling Li, Qingxia Liu, Wei Wang, Zijuan Jian, Wenen Liu
Software Mentions: 4
Published: over 4 years ago

10.1155/2020/9143695

Identification of Prognosis-Related Genes in Bladder Cancer Microenvironment across TCGA Database
Cited by: 7
Author(s): Xin Zhao, Yu Tang, Haoyu Ren, Yi Lei
Software Mentions: 4
Published: about 4 years ago

10.1186/s12935-021-01834-x

High expression of CDCA7 predicts poor prognosis for clear cell renal cell carcinoma and explores its associations with immunity
Cited by: 12
Author(s): Shouyong Liu, Yi Wang, Chenkui Miao, Zengjun Wang
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.203323

An immune-related lncRNA signature for the prognosis of pancreatic adenocarcinoma
Cited by: 10
Author(s): Bing Qi, Han Liu, Qi Zhou, Ji Li, Xueying Shi, Yu‐Shan Wei, Yinmin Gu, Akio Mizushima, Shilin Xia
Software Mentions: 4
Published: over 3 years ago

10.1155/2019/1093815

Exploring the Pathological Mechanism of Bladder Cancer Based on Tumor Mutational Burden Analysis
Cited by: 9
Author(s): Yao Ma, Xiaofei Feng, Wan-Xia Yang, Chongge You
Software Mentions: 4
Published: over 5 years ago

10.3389/fmolb.2021.622643

Immune-Inhibitory Gene Expression is Positively Correlated with Overall Immune Activity and Predicts Increased Survival Probability of Cervical and Head and Neck Cancer Patients
Cited by: 10
Author(s): Megha Budhwani, Gavin Turrell, Meihua Yu, Ian H. Frazer, Ahmed M. Mehdi, Janin Chandra
Software Mentions: 4
Published: over 3 years ago

10.1186/s12935-018-0681-1

Identification of RPL5 and RPL10 as novel diagnostic biomarkers of Atypical teratoid/rhabdoid tumors
Cited by: 6
Author(s): Yanming Ren, Chuanmin Tao, Xiliang Wang, Yan Ju
Software Mentions: 4
Published: about 6 years ago

10.1186/s12935-021-01833-y

Systematic analysis of the expression and prognosis relevance of FBXO family reveals the significance of FBXO1 in human breast cancer
Cited by: 17
Author(s): Yaqian Liu, Bo Pan, Weikun Qu, Yilong Cao, Jun Li, Hailin Zhao
Software Mentions: 4
Published: almost 4 years ago

10.1155/2020/3416807

Identification of Hub Genes as Biomarkers Correlated with the Proliferation and Prognosis in Lung Cancer: A Weighted Gene Co-Expression Network Analysis
Cited by: 2
Author(s): Xuting Xu, Limin Xu, Huilian Huang, Jing Li, Shunli Dong, Lili Jin, Zhiyong Ma, Liqin Li
Software Mentions: 4
Published: over 4 years ago

10.1093/gigascience/giaa109

A map of tumor–host interactions in glioma at single-cell resolution
Cited by: 31
Author(s): Francesca Pia Caruso, Luciano Garofano, Fulvio D’Angelo, Kai Yu, Fuchou Tang, Jinzhou Yuan, Jing Zhang, Luigi Cerulo, Stefano Maria Pagnotta, Davide Bedognetti, Peter A. Sims, Mario L. Suvà, Xiao‐Dong Su, Anna Lasorella, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: about 4 years ago

10.1016/j.stem.2019.06.011

Outcompeting p53-Mutant Cells in the Normal Esophagus by Redox Manipulation
Cited by: 77
Author(s): David Fernández‐Antorán, Gabriel Piedrafita, Kiyohito Murai, Swee Hoe Ong, Albert Herms, Christian Frezza, Philip H. Jones
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2021.691142

Dynamic Network Biomarker of Pre-Exhausted CD8+ T Cells Contributed to T Cell Exhaustion in Colorectal Cancer
Cited by: 16
Author(s): Jiaqi Hu, Chongyin Han, Jiayuan Zhong, Huisheng Liu, Rui Li, Wei Luo, Pei Chen, Fei Ling
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.103127

Identification of HMG-box family establishes the significance of SOX6 in the malignant progression of glioblastoma
Cited by: 7
Author(s): Lan Jiang, Hui Yang, Tianbing Chen, Xiaolong Zhu, Jingjing Ye, Kun Lv
Software Mentions: 4
Published: over 4 years ago

10.1186/s12935-019-0975-y

Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer
Cited by: 27
Author(s): Jianming Wei, Jinmiao Wang, Xibo Gao, Feng Qi
Software Mentions: 4
Published: about 5 years ago

10.1002/jcb.29128

NCF2, MYO1F, S1PR4, and FCN1 as potential noninvasive diagnostic biomarkers in patients with obstructive coronary artery: A weighted gene co‐expression network analysis
Cited by: 24
Author(s): Xiangang Mo, Wei Liu, Yunan Yang, Saber Imani, Shan Lu, Guorong Dan, Xuqiang Nie, Jun Yan, Rong Zhan, Xiaohui Li, Youcai Deng, Bingbo Chen, Yuchen Cai
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/4612158

CCNB2, TOP2A, and ASPM Reflect the Prognosis of Hepatocellular Carcinoma, as Determined by Weighted Gene Coexpression Network Analysis
Cited by: 9
Author(s): Yuping Zeng, He He, Yu Zhang, Xia Wang, Yang Lin-de, Zhenmei An
Software Mentions: 4
Published: over 4 years ago

10.1093/gigascience/giz047

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood
Cited by: 24
Author(s): Yi Zhao, Xiao Li, Weihua Zhao, Jingwan Wang, Jun Yu, Ziyun Wan, Kai Gao, Gang Ye, Wang Xie, Bingbing Fan, Qinkai Wu, Bangwei Chen, Feng Xie, Jinghua Wu, Wei Zhang, Fang Chen, Huanming Yang, Jian Wang, Xun Xu, Bin Li, Shiping Liu, Yong Hou, Xiao Liu
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9092047

Rebuilding Tendons: A Concise Review on the Potential of Dermal Fibroblasts
Cited by: 10
Author(s): Jin Chu, Ming Lu, Christian Pfeifer, Volker Alt, Denitsa Docheva
Software Mentions: 4
Published: about 4 years ago

10.1155/2020/9031723

Identification and Analysis of Estrogen Receptor α Promoting Tamoxifen Resistance-Related lncRNAs
Cited by: 11
Author(s): Xiulei Zhang, Shanjun Gao, Zhen Li, Wei Wang, Guangzhi Liu
Software Mentions: 4
Published: over 4 years ago

10.1016/j.gpb.2019.05.005

Genome-wide 5-Hydroxymethylcytosine Profiling Analysis Identifies MAP7D1 as A Novel Regulator of Lymph Node Metastasis in Breast Cancer
Cited by: 8
Author(s): Shuang‐Ling Wu, Xiaoyi Zhang, Mengqi Chang, Changcai Huang, Jun Qian, Qing Li, Fang Yuan, Lihong Sun, Xinmiao Yu, Xinmiao Cui, Jiaxin Jiang, Meng-Yao Cui, Ye Liu, Hengchao Wu, Liang Zeng, Xiaoyue Wang, Yamei Niu, Wei‐Min Tong, Feng Jin
Software Mentions: 4
Published: almost 4 years ago

10.1111/jcmm.14585

Differential coexpression networks in bronchiolitis and emphysema phenotypes reveal heterogeneous mechanisms of chronic obstructive pulmonary disease
Cited by: 11
Author(s): Jiangyue Qin, Ting Yang, Ni Zeng, Chun Wan, Lijuan Gao, Xiaoou Li, Lei Chen, Yongchun Shen, Fuqiang Wen
Software Mentions: 4
Published: over 5 years ago

10.1186/s12986-019-0366-3

A novel lncRNA-miRNA-mRNA triple network identifies lncRNA TWF1 as an important regulator of miRNA and gene expression in coronary artery disease
Cited by: 15
Author(s): Miao Liu, Rui-Xing Yin, Qinghui Zhang, Xi‐Jiang Hu, Feng Huang, Wu-Xian Chen, Xiaoli Cao, Jin‐Zhen Wu
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9122637

RNA-Seq Analysis of Cisplatin and the Monofunctional Platinum(II) Complex, Phenanthriplatin, in A549 Non-Small Cell Lung Cancer and IMR90 Lung Fibroblast Cell Lines
Cited by: 4
Author(s): Jerry D. Monroe, Satya A. Moolani, Elvin N. Irihamye, Joshua S. Speed, Yann Gibert, Michael E. Smith
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12935-020-01352-2

Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
Cited by: 19
Author(s): Naiqiang Zhu, Jingyi Hou, Guiyun Ma, Shuai Guo, Chengliang Zhao, Bin Chen
Software Mentions: 4
Published: over 4 years ago

10.1111/jcmm.14830

Identification of immune‐enhanced molecular subtype associated with BRCA1 mutations, immune checkpoints and clinical outcome in ovarian carcinoma
Cited by: 23
Author(s): Mingjun Zheng, Yuexin Hu, Rui Gou, Ouxuan Liu, Xin Nie, Xiao Li, Qing Liu, Yingying Hao, Juanjuan Liu, Bei Lin
Software Mentions: 4
Published: almost 5 years ago

10.1111/jcmm.15370

Genome‐Wide Analysis of circular RNAs and validation of hsa_circ_0006719 as a potential novel diagnostic biomarker in congenital scoliosis patients
Cited by: 1
Author(s): Gang Liu, Jianxiong Shen, Chong Chen, Yang Jiao, Zheng Li, Haining Tan, Youxi Lin, Tianhua Rong
Software Mentions: 4
Published: over 4 years ago

10.1155/2020/8604340

MCM2andNUSAP1Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer
Cited by: 16
Author(s): Yajun Deng, Hanyun Ma, Jinyong Hao, Qiqi Xie, Rui Zhao
Software Mentions: 4
Published: over 4 years ago

10.3389/fimmu.2021.667875

TNF-Alpha Pathway Alternation Predicts Survival of Immune Checkpoint Inhibitors in Non-Small Cell Lung Cancer
Cited by: 9
Author(s): Anqi Lin, Hongman Zhang, Hua Meng, Ze Deng, Tianqi Gu, Peng Luo, Jian Zhang
Software Mentions: 4
Published: about 3 years ago

10.18632/aging.103624

POC1A acts as a promising prognostic biomarker associated with high tumor immune cell infiltration in gastric cancer
Cited by: 6
Author(s): Jun Q. Lu, Xiaoyan Huang, Yaohui Wang, Jian‐Wei Xie, Jia-Bin Wang, Jiumao Lin, Qi‐Yue Chen, Long‐Long Cao, Ping Li, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 4
Published: about 4 years ago

10.1155/2021/6644827

Multiomics Analysis of Genetics and Epigenetics Reveals Pathogenesis and Therapeutic Targets for Atrial Fibrillation
Cited by: 2
Author(s): Li Liu, Jianjun Huang, Baomin Wei, Jianjiao Mo, Qinjiang Wei, Chengcai Chen, Yan Wang, Xian-Nan Huang, Fengzhen He, Lingling Qin, Hehua Huang, Xue Li, Xingshou Pan
Software Mentions: 4
Published: over 3 years ago

10.1111/jcmm.15505

Asiaticoside might attenuate bleomycin‐induced pulmonary fibrosis by activating cAMP and Rap1 signalling pathway assisted by A2AR
Cited by: 18
Author(s): Jing Luo, Ting Zhang, Ce Zhu, Junwei Sun, Wenjing Zhu, Wenxiu Ai, Xiaoying Huang, Xiaobing Wang
Software Mentions: 4
Published: over 4 years ago

10.3390/nu12123858

Effects of Daily Raspberry Consumption on Immune-Metabolic Health in Subjects at Risk of Metabolic Syndrome: A Randomized Controlled Trial
Cited by: 18
Author(s): Maximilien Franck, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette, Marie‐Claude Vohl
Software Mentions: 4
Published: almost 4 years ago

10.1155/2020/4251761

Identification of Potential Hub Genes Related to Diagnosis and Prognosis of Hepatitis B Virus-Related Hepatocellular Carcinoma via Integrated Bioinformatics Analysis
Cited by: 28
Author(s): Yuqin Tang, Yongqiang Zhang, Xun Hu
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.202452

Evaluation of the prognostic values of solute carrier (SLC) family 39 genes for patients with lung adenocarcinoma
Cited by: 8
Author(s): Haoming Zhou, Yingbo Zhu, Huizhong Qi, Liang Liang, Hao Wu, Jingping Yuan, Qingyong Hu
Software Mentions: 4
Published: almost 4 years ago

10.1155/2020/2137319

Identification of Four Pathological Stage-Relevant Genes in Association with Progression and Prognosis in Clear Cell Renal Cell Carcinoma by Integrated Bioinformatics Analysis
Cited by: 5
Author(s): Dengyong Xu, Yuzi Xu, Yiming Lv, Fei Wu, Yunlong Liu, Ming Zhu, Dake Chen, Bingjun Bai
Software Mentions: 4
Published: over 4 years ago

10.1002/cam4.3372

Identification of prognostic biomarkers associated with stromal cell infiltration in muscle‐invasive bladder cancer by bioinformatics analyses
Cited by: 10
Author(s): Pan Li, Jinlong Cao, Jianpeng Li, Zhiqiang Yao, Dali Han, Lijun Ying, Zhiping Wang, Junqiang Tian
Software Mentions: 4
Published: over 4 years ago

10.1111/jcmm.16221

Expression and prognostic characteristics of m 5 C regulators in low‐grade glioma
Cited by: 11
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13059-020-1928-4

scMAGeCK links genotypes with multiple phenotypes in single-cell CRISPR screens
Cited by: 35
Author(s): Lin Yang, Yuqing Zhu, Hua Yu, Xinhua Cheng, Sitong Chen, Yulan Chu, He Huang, Zhang Jin, Wei Li
Software Mentions: 4
Published: almost 5 years ago

10.1155/2021/6616434

Weighted Gene Coexpression Network Analysis Uncovers Critical Genes and Pathways for Multiple Brain Regions in Parkinson’s Disease
Cited by: 4
Author(s): Jianjun Huang, Li Liu, Lingling Qin, Hehua Huang, Li Xue
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.202153

Upregulation of KIF20A promotes tumor proliferation and invasion in renal clear cell carcinoma and is associated with adverse clinical outcome
Cited by: 30
Author(s): Xiaohan Ren, Xinglin Chen, Yisheng Ji, Liang-In Lin, Yunxin Li, Chao Qin, Kai Fang
Software Mentions: 4
Published: about 4 years ago

10.1155/2019/5058313

Transcriptome Analysis of Hypertrophic Heart Tissues from Murine Transverse Aortic Constriction and Human Aortic Stenosis Reveals Key Genes and Transcription Factors Involved in Cardiac Remodeling Induced by Mechanical Stress
Cited by: 7
Author(s): Peng Yu, Baoli Zhang, Ming Liu, Ying Yu, Jian Zhao, Chunyu Zhang, Yana Li, Lei Zhang, Xue Yang, Hong Jiang, Yunzeng Zou, Junbo Ge
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.16393

TTN/OBSCN ‘Double‐Hit’ predicts favourable prognosis, ‘immune‐hot’ subtype and potentially better immunotherapeutic efficacy in colorectal cancer
Cited by: 33
Author(s): Xinwei Han, Libo Wang, Chunguang Guo, Long Liu, Dechao Jiao, Zhenqiang Sun, Kunpeng Wu, Yanan Zhao
Software Mentions: 4
Published: almost 4 years ago

10.1155/2021/6697810

Shared Genetic and Epigenetic Mechanisms between the Osteogenic Differentiation of Dental Pulp Stem Cells and Bone Marrow Stem Cells
Cited by: 14
Author(s): Sebastian Gaus, Hanluo Li, Simin Li, Qian Wang, Tina Kottek, Sebastian Hahnel, Xiangqiong Liu, Yupei Deng, Dirk Ziebolz, Rainer Haak, Gerhard Schmalz, Lei Liu, Vuk Savković, Bernd Lethaus
Software Mentions: 4
Published: almost 4 years ago

10.1111/jcmm.16553

Construction of a SUMOylation regulator‐based prognostic model in low‐grade glioma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: over 3 years ago

10.1002/cam4.1498

Establishment of a nine‐gene prognostic model for predicting overall survival of patients with endometrial carcinoma
Cited by: 13
Author(s): Jianchao Ying, Qian Wang, Teng Xu, Jianxin Lyu
Software Mentions: 4
Published: over 6 years ago

10.1155/2021/5590743

Summarizing the Effective Herbs for the Treatment of Hypertensive Nephropathy by Complex Network and Machine Learning
Cited by: 6
Author(s): Jia-Ming Huan, Wen-Ge Su, Li Wei, Chao Gao, Pingzhu Zhou, FU Chun-sheng, Xiaofeng Wang, Yimin Wang
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.102766

Screening and identification of genes associated with cell proliferation in cholangiocarcinoma
Cited by: 1
Author(s): Li Guo, Yaodong Zhang, Zibo Yin, Yaya Ji, Guowei Yang, Bowen Qian, Sunjing Li, Jun Wang, Tingming Liang, Changxian Li, Xiangcheng Li
Software Mentions: 4
Published: almost 5 years ago

10.1111/jcmm.16800

Prognostic signature and immune efficacy of m1A‐, m5C‐ and m6A‐related regulators in cutaneous melanoma
Cited by: 20
Author(s): Xian rui Wu, Zheng Chen, Yang Liu, Zi zi Chen, Fengjie Tang, Zhi zhao Chen, Jing Jing Li, Jun Liu, Ke Cao, Xiang Chen, Jianda Zhou
Software Mentions: 4
Published: over 3 years ago

10.1186/s12711-021-00656-9

Large-scale transcriptome sequencing in broiler chickens to identify candidate genes for breast muscle weight and intramuscular fat content
Cited by: 7
Author(s): Hao Kang, Di Zhao, Hai Xiang, Jing Li, Guiping Zhao, Hua Li
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.57438

Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous mice
Cited by: 43
Author(s): Ying Wang, Thomas S. Chaffee, Rebecca S. LaRue, Danielle N. Huggins, Patrice M Witschen, Ayman Ibrahim, Andrew C. Nelson, Heather L. Machado, Kathryn L. Schwertfeger
Software Mentions: 4
Published: over 4 years ago

10.1590/1678-4685-GMB-2019-0090

Integrated analysis of lncRNA-associated ceRNA network identified potential regulatory interactions in osteosarcoma
Cited by: 4
Author(s): Yongwei Wang, Yaxian Gao, Sen Guo, Zhihong Chen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12967-020-02679-0

Development of nomogram based on immune-related gene FGFR4 for advanced non-small cell lung cancer patients with sensitivity to immune checkpoint inhibitors
Cited by: 13
Author(s): Li Wang, Zhixuan Ren, Bentong Yu, Jian Tang
Software Mentions: 4
Published: almost 4 years ago

10.26508/lsa.202000825

The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic β-cells
Cited by: 13
Author(s): Maria Inês Alvelos, Mirko Brüggemann, F. X. Reymond Sutandy, Jonàs Juan-Mateu, Máikel Luís Colli, Anke Busch, Miguel Lopes, Ângela Castela, Annemieke Aartsma‐Rus, Julian König, Kathi Zarnack, Décio L. Eizirik
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12944-019-1142-0

LncRNA SNHG8 is identified as a key regulator of acute myocardial infarction by RNA-seq analysis
Cited by: 26
Author(s): Liuan Zhuo, Yi-Tao Wen, Yong Wang, Zhi-Fang Liang, Gang Wu, Nong Mei-dan, Miao Liu
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/6656943

Glial Cell-Derived Neurotrophic Factor Functions as a Potential Candidate Gene in Obstructive Sleep Apnea Based on a Combination of Bioinformatics and Targeted Capture Sequencing Analyses
Cited by: 3
Author(s): Yuanyuan Cao, Qing Zhu, Xintian Cai, Ting Wu, Xiayire Aierken, Ayguzal Ahmat, Shasha Li, Nanfang Li
Software Mentions: 4
Published: almost 4 years ago

10.3390/genes12020299

Analysis of the Differential Gene and Protein Expression Profiles of Corneal Epithelial Cells Stimulated with Alternating Current Electric Fields
Cited by: 5
Author(s): Bhavani S. Kowtharapu, Jyoti Damaraju, Nitesh Kumar Singh, Josefin Ziebart, Rainer Bader, Dirk Koczan, Oliver Stachs
Software Mentions: 4
Published: almost 4 years ago

10.1097/MD.0000000000026775

Single-cell transcriptional profiling reveals the heterogeneity in embryonal rhabdomyosarcoma
Cited by: 1
Author(s): Bo Hong, Tian Xia, Chun-Jing Ye, Yong Zhan, Ran Yang, Jia Liu, Yang Li, Zhi-Xue Chen, Wei Yao, Kai Li, Jia Wang, Rui Dong
Software Mentions: 4
Published: over 3 years ago

10.3390/genes11070794

Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis
Cited by: 3
Author(s): Edian F. Franco, Pratip Rana, Ana Lídia Queiroz Cavalcante, Artur da Costa da Luiz Silva, Anne Cybelle Pinto Gomide, Adriana Ribeiro Carneiro Folador, Vasco Azevedo, Preetam Ghosh, Rommel Thiago Jucá Ramos
Software Mentions: 4
Published: over 4 years ago

10.1097/MD.0000000000025715

Mining immune-related genes with prognostic value in the tumor microenvironment of breast invasive ductal carcinoma
Cited by: 1
Author(s): Qiang He, Shuyin Xue, Qingde Wa, Mei He, Feng Shan, Zhibing Chen, Wei Chen, Xinrong Luo
Software Mentions: 4
Published: over 3 years ago

10.1097/MD.0000000000025008

PLCG2 as a potential indicator of tumor microenvironment remodeling in soft tissue sarcoma
Cited by: 10
Author(s): Zhengtian Li, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Gang Du, Lingling Jiang
Software Mentions: 4
Published: over 3 years ago

10.18632/aging.203168

Cell landscape atlas for patients with chronic thromboembolic pulmonary hypertension after pulmonary endarterectomy constructed using single-cell RNA sequencing
Cited by: 8
Author(s): Ran Miao, Xingbei Dong, Juanni Gong, Yidan Li, Xiaojuan Guo, Jianfeng Wang, Qiang Huang, Ying Wang, Jifeng Li, Suqiao Yang, Tuguang Kuang, Jun Wan, Min Liu, Zhenguo Zhai, Jiuchang Zhong, Yuanhua Yang
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-019-0650-5

Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites
Cited by: 93
Author(s): Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Annelies Geirnaert, Rachelle Prantil‐Baun, Diogo M. Camacho, David B. Chou, Hossein Baharvand, Tomás de Wouters, Magdalena Kasendra, Michael Super, Mark Cartwright, Camilla A. Richmond, David T. Breault, Christophe Lacroix, Donald E. Ingber
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.60266

Single nuclei RNA-seq of mouse placental labyrinth development
Cited by: 68
Author(s): Bryan Marsh, Robert Blelloch
Software Mentions: 4
Published: about 4 years ago

10.3390/genes11060709

Extensive Involvement of Alternative Polyadenylation in Single-Nucleus Neurons
Cited by: 3
Author(s): Ying Wang, Weixing Feng, Siwen Xu, Bo He
Software Mentions: 4
Published: over 4 years ago

10.1111/jcmm.16831

Bioinformatics analysis of the prognostic value of NEK8 and its effects on immune cell infiltration in glioma
Cited by: 7
Author(s): Meng Xiao, Chuang Du, Chuanbo Zhang, Xinzhong Zhang, Shaomin Li, Dainan Zhang, Wang Jia
Software Mentions: 4
Published: over 3 years ago

10.3390/jcm8050639

The Role of MicroRNAs in the Regulation of Gastric Cancer Stem Cells: A Meta-Analysis of the Current Status
Cited by: 22
Author(s): Vitalba Ruggieri, Sabino Russi, Pietro Zoppoli, Francesco La Rocca, Tiziana Angrisano, Geppino Falco, Giovanni Calice, Simona Laurino
Software Mentions: 4
Published: over 5 years ago

10.3390/genes11030345

Arabidopsis thaliana MLK3, a Plant-Specific Casein Kinase 1, Negatively Regulates Flowering and Phosphorylates Histone H3 In Vitro
Cited by: 12
Author(s): Junmei Kang, Huiting Cui, Shangang Jia, Wenwen Liu, Renjie Yu, Zhihai Wu, Zhen Wang
Software Mentions: 4
Published: over 4 years ago

10.3390/microorganisms8091267

Investigating Both Mucosal Immunity and Microbiota in Response to Gut Enteritis in Yellowtail Kingfish
Cited by: 17
Author(s): Thibault Philippe Raymond Albert Legrand, James W. Wynne, Laura S. Weyrich, Alan Oxley
Software Mentions: 4
Published: over 4 years ago

10.1186/s40364-021-00302-y

Lower BCL11B expression is associated with adverse clinical outcome for patients with myelodysplastic syndrome
Cited by: 7
Author(s): Xin Huang, Cunte Chen, Mengjun Zhong, Suxia Geng, Yujie Zhao, Minming Li, Chenxin Deng, Lizhi Zeng, Ping Wu, Zhihui Lu, Jianyu Weng, Xin Du, Yangqiu Li
Software Mentions: 4
Published: over 3 years ago

10.1093/molbev/msab094

Analysis of Fungal Genomes Reveals Commonalities of Intron Gain or Loss and Functions in Intron-Poor Species
Cited by: 17
Author(s): Chun Shen Lim, Brooke N. Weinstein, Scott William Roy, Chris M. Brown
Software Mentions: 4
Published: over 3 years ago

10.1186/s13041-020-00623-3

Differentiation and localization of interneurons in the developing spinal cord depends on DOT1L expression
Cited by: 6
Author(s): Angelica Gray de Cristoforis, Francesco Ferrari, Frédéric Clotman, Tanja Vogel
Software Mentions: 4
Published: over 4 years ago

10.1186/s40659-018-0188-1

Identification of key genes and miRNAs markers of papillary thyroid cancer
Cited by: 31
Author(s): Jie Qiu, Wenwei Zhang, Chuanshan Zang, Xiaomin Liu, Fuxue Liu, Ruifeng Ge, Yan Sun, Qingsheng Xia
Software Mentions: 4
Published: about 6 years ago

10.3390/genes11010031

Transcriptome-Wide Analysis Reveals Key DEGs in Flower Color Regulation of Hosta plantaginea (Lam.) Aschers
Cited by: 7
Author(s): Jingying Zhang, Changhai Sui, Yanli Wang, Shuying Liu, Huimin Liu, Zhengren Zhang, Liu Hong-zhang
Software Mentions: 4
Published: almost 5 years ago

10.3390/genes10110944

Dissecting the Regulatory Network of Leaf Premature Senescence in Maize (Zea mays L.) Using Transcriptome Analysis of ZmELS5 Mutant
Cited by: 12
Author(s): Mao Chai, Zhanyong Guo, Xia Shi, Yingbo Li, Jian Tang, Zhan‐Hui Zhang
Software Mentions: 4
Published: about 5 years ago

10.1186/s13148-021-01115-4

Combined prenatal Lactobacillus reuteri and ω-3 supplementation synergistically modulates DNA methylation in neonatal T helper cells
Cited by: 7
Author(s): Johanna Huoman, David Martínez-Enguita, Elin Olsson, Jan Ernerudh, Lennart Nilsson, Karel Duchén, Mika Gustafsson, Maria C. Jenmalm
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-98806-y

Single-cell and bulk transcriptomics of the liver reveals potential targets of NASH with fibrosis
Cited by: 36
Author(s): Zhongyi Wang, Adrian Keogh, Annick Waldt, Rachel Cuttat, Marilisa Neri, Shuchai Zhu, Sven Schuierer, Alexandra Ruchti, Christophe Crochemore, Judith Knehr, Julie Bastien, Iwona Ksiazek, Daniel Sánchez-Taltavull, Hui Ge, Jing Wu, Guglielmo Roma, Stephen B. Helliwell, Deborah Stroka, Florian Nigsch
Software Mentions: 4
Published: about 3 years ago

10.3390/genes10090719

WGCNA Analysis of Salt-Responsive Core Transcriptome Identifies Novel Hub Genes in Rice
Cited by: 50
Author(s): Mei-Ling Zhu, Hongjun Xie, Xiangjin Wei, Komivi Dossa, Yaying Yu, Suozhen Hui, Guohua Tang, Xiaoshan Zeng, Ye Yu, Jianlong Wang
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.66522

Ketogenic diet restrains aging-induced exacerbation of coronavirus infection in mice
Cited by: 33
Author(s): Seungjin Ryu, Irina Shchukina, Yun‐Hee Youm, Hua Qing, Brandon Hilliard, Tamara Dlugos, Xinbo Zhang, Yuki Yasumoto, Carmen J. Booth, Carlos Fernández‐Hernando, Yajaira Suárez, Kamal M. Khanna, Tamás L. Horváth, Marcelo O Dietrich, Maxim N. Artyomov, Andrew Wang, Vishwa Deep Dixit
Software Mentions: 4
Published: over 3 years ago

10.1016/j.molcel.2018.09.023

Phosphorylation of Histone H4T80 Triggers DNA Damage Checkpoint Recovery
Cited by: 20
Author(s): Gonzalo Millán-Zambrano, Helena Santos‐Rosa, Fabio Puddu, Samuel Robson, Stephen Jackson, Tony Kouzarides
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.120.401545

Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila
Cited by: 3
Author(s): Casper Groth, Pooja Vaid, Aditi S. Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, T.S. Sridhar, Stephen M. Cohen, L. S. Shashidhara
Software Mentions: 4
Published: about 4 years ago

10.1534/g3.120.401183

Resistance Mechanisms ofSaccharomyces cerevisiaeto Commercial Formulations of Glyphosate Involve DNA Damage Repair, the Cell Cycle, and the Cell Wall Structure
Cited by: 8
Author(s): Apoorva Ravishankar, Amaury Pupo, Jennifer E. Gallagher
Software Mentions: 4
Published: over 4 years ago

10.1186/s13148-020-00989-0

Identification and validation of methylated differentially expressed miRNAs and immune infiltrate profile in EBV-associated gastric cancer
Cited by: 4
Author(s): Man-Sheng Zhu, Qi Liang, Tao Chen, Qian Kong, Gengtai Ye, Shitong Yu, Xunjun Li, Qinglie He, Hao Líu, Yanfeng Hu, Jiang Yu, Guoxin Li
Software Mentions: 4
Published: almost 4 years ago

10.1016/j.molmet.2018.09.011

Regulation of glucose uptake and inflammation markers by FOXO1 and FOXO3 in skeletal muscle
Cited by: 35
Author(s): Lars Lundell, Julie Massart, Ali Altıntaş, Anna Krook, Juleen R. Zierath
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13024-019-0351-3

Genetic perturbations of disease risk genes in mice capture transcriptomic signatures of late-onset Alzheimer’s disease
Cited by: 24
Author(s): Ravi S. Pandey, Leah C. Graham, Asli Uyar, Christoph Preuß, Gareth R. Howell, Gregory W. Carter
Software Mentions: 4
Published: almost 5 years ago

10.1093/bioinformatics/btaa1096

MendelVar: gene prioritization at GWAS loci using phenotypic enrichment of Mendelian disease genes
Cited by: 8
Author(s): Maria K. Sobczyk, Tom R. Gaunt, Lavinia Paternoster
Software Mentions: 4
Published: almost 4 years ago

10.3389/fimmu.2021.666163

Transcriptomic Signature Differences Between SARS-CoV-2 and Influenza Virus Infected Patients
Cited by: 22
Author(s): Stéphanie Bibert, Nicolas Guex, João Lourenço, Thomas Brahier, Matthaios Papadimitriou-Olivgeris, Lauro Damonti, Oriol Manuel, Robin Liechti, Lou Götz, Jonathan Tschopp, Mathieu Quinodoz, Péter Vollenweider, Jean‐Luc Pagani, Mauro Oddo, Olivier Hügli, Frédéric Lamoth, Véronique Erard, Cathy Voide, Mauro Delorenzi, Nathalie Rufer, Fabio Candotti, Carlo Rivolta, Noémie Boillat‐Blanco, Pierre‐Yves Bochud
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2019.00603

Analysis of Key Genes Involved in Potato Anthocyanin Biosynthesis Based on Genomics and Transcriptomics Data
Cited by: 13
Author(s): Nie Tengkun, Dongdong Wang, Xiaoyan Ma, Yue Chen, Qin Chen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41380-020-00955-5

Temporal unsnarling of brain’s acute neuroinflammatory transcriptional profiles reveals panendothelitis as the earliest event preceding microgliosis
Cited by: 24
Author(s): Mahesh Chandra Kodali, Hao Chen, Francesca‐Fang Liao
Software Mentions: 4
Published: almost 4 years ago

10.18632/aging.202173

A novel immune-related genes prognosis biomarker for hepatocellular carcinoma
Cited by: 7
Author(s): Kunpeng Wang, Xinyi Chen, Chong Jin, Jinggang Mo, Hao Jiang, Bin Yi, Xiang Chen
Software Mentions: 4
Published: about 4 years ago

10.1002/btm2.10232

Targeting thymidine phosphorylase as a potential therapy for bone loss associated with periprosthetic osteolysis
Cited by: 11
Author(s): Gen Matsumae, Tomohiro Shimizu, Yuan Tian, Daisuke Takahashi, Taku Ebata, Hend Alhasan, Shunichi Yokota, Ken Kadoya, Mohamad Alaa Terkawi, Norimasa Iwasaki
Software Mentions: 4
Published: over 3 years ago

10.3389/fmolb.2021.653805

High Expression Levels of CDK1 and CDC20 in Patients With Lung Squamous Cell Carcinoma are Associated With Worse Prognosis
Cited by: 3
Author(s): Huan Deng, Hang Qin, Deyan Shen, Hangjie Ying, Yibi Zhang, Qinying Xu, Ming Chen
Software Mentions: 4
Published: over 3 years ago

10.1186/s13148-021-01090-w

Identification of prognosis-related molecular subgroups based on DNA methylation in pancreatic cancer
Cited by: 6
Author(s): Xiaoli Yin, Lingming Kong, Peng Liu
Software Mentions: 4
Published: over 3 years ago

10.1186/s13287-019-1245-6

DNA methylation dynamic of bone marrow hematopoietic stem cells after allogeneic transplantation
Cited by: 13
Author(s): Stefania Trino, Pietro Zoppoli, Angelo Michele Carella, Ilaria Laurenzana, Alessandro Weisz, Domenico Memoli, Giovanni Calice, Francesco La Rocca, Vittorio Simeon, Lucia Savino, Luigi Del Vecchio, Pellegrino Musto, Antonella Caivano, Luciana De Luca
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.643137

Nepenthes × ventrata Transcriptome Profiling Reveals a Similarity Between the Evolutionary Origins of Carnivorous Traps and Floral Organs
Cited by: 4
Author(s): А. В. Щенникова, Alexey V. Beletsky, M. A. Filyushin, М. А. Слугина, Eugeny V. Gruzdev, Andrey V. Mardanov, Е. З. Кочиева, Н. В. Равин
Software Mentions: 4
Published: over 3 years ago

10.1186/s12957-021-02201-w

Gene coexpression network approach to develop an immune prognostic model for pancreatic adenocarcinoma
Cited by: 5
Author(s): Xing Gu, Qiqi Zhang, Xueying Wu, Yue Fan, Ji Qian
Software Mentions: 4
Published: over 3 years ago

Projects: bioconductor: clusterProfiler

Papers Mentioning clusterProfiler 2,223