bioconductor: affy | Projects | Ecosyste.ms: Papers

10.3390/cells9081822

Repeated Application of Autologous Bone Marrow-Derived Lineage-Negative Stem/Progenitor Cells—Focus on Immunological Pathways in Patients with ALS
Cited by: 7
Author(s): Bartłomiej Baumert, Anna Sobuś, Monika Gołąb-Janowska, Edyta Paczkowska, Karolina Łuczkowska, Dorota Rogińska, Alicja Zawiślak, Sławomir Milczarek, Bogumiła Osękowska, Wioletta Pawlukowska, Agnieszka Meller, Karolina Machowska-Sempruch, Agnieszka Wełnicka, Krzysztof Safranow, Bogusław Machaliński
Software Mentions: 3
Published: over 4 years ago

10.3390/cells9010165

In Silico Analysis of the Age-Dependent Evolution of the Transcriptome of Mouse Skin Stem Cells
Cited by: 4
Author(s): L. Francisco Lorenzo‐Martín, Xosé R. Bustelo
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.dib.2016.04.045

Transcriptome data on maternal RNA of 24 individual zebrafish eggs from five sibling mothers
Cited by: 1
Author(s): J.F.B. Pagano, Han Rauwerda, Wim C. de Leeuw, Paul Wackers, Mark de Jong, Wim A. Ensink, R.J. Dekker, Ulrike Nehrdich, Herman P. Spaink, Martijs J. Jonker, Timo M. Breit
Software Mentions: 3
Published: about 8 years ago

10.1186/1756-8935-3-10

Efficiency of Xist-mediated silencing on autosomes is linked to chromosomal domain organisation
Cited by: 56
Author(s): Y. Amy Tang, Derek Huntley, Giovanni Montana, Andrea Cerase, Tatyana B. Nesterova, Neil Brockdorff
Software Mentions: 3
Published: over 14 years ago

10.1186/s13072-021-00406-7

AF10 (MLLT10) prevents somatic cell reprogramming through regulation of DOT1L-mediated H3K79 methylation
Cited by: 5
Author(s): Deniz Uğurlu-Çimen, Deniz Odluyurt, Kenan Sevinç, Nazlı Ezgi Özkan Küçük, Burcu Özçimen, Deniz Demirtaş, Eray Enüstün, Can Aztekin, Martin Philpott, U. Oppermann, Nurhan Özlü, Tamer T. Önder
Software Mentions: 3
Published: over 3 years ago

10.1155/2021/1186458

DNA Hypomethylation of DOCK1 Leading to High Expression Correlates with Neurologic Deterioration and Poor Function Outcomes after Spontaneous Intracerebral Hemorrhage
Cited by: 5
Author(s): Yufeng Gao, Xiaojie Fu, Lie Yu, Di Zhang, Zhaoming Lu, Kefei Cui, Chang Liu, Man Jiang, Jianping Wang
Software Mentions: 3
Published: about 3 years ago

10.12688/f1000research.10960.2

A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification
Cited by: 11
Author(s): Jessica Roelands, Julie Decock, Sabri Boughorbel, Darawan Rinchai, Cristina Maccalli, Michele Ceccarelli, Michael A. Black, Chris Print, Jeff Chou, Scott Presnell, Charlie Quinn, Puthen V. Jithesh, Najeeb Syed, Salha B.J. Al Bader, Shahinaz Bedri, Ena Wang, Francesco M. Marincola, Damien Chaussabel, Peter J.K. Kuppen, Lance D. Miller, Davide Bedognetti, Wouter Hendrickx
Software Mentions: 3
Published: almost 7 years ago

10.1096/fj.201902664

The TGF‐b/SOX4 axis and ROS‐driven autophagy co‐mediate CD39 expression in regulatory T‐cells
Cited by: 24
Author(s): Marlene C. Gerner, Liesa S. Ziegler, Ralf Schmidt, Martin Krenn, Fritz Zimprich, Keziban Uyanik‐Ünal, Vassiliki Konstantopoulou, Sophia Derdak, Giorgia Del Favero, Ilse Schwarzinger, Kaan Boztuğ, Klaus G. Schmetterer
Software Mentions: 3
Published: over 4 years ago

10.3389/fnagi.2014.00044

Transcriptomics of Post-Stroke Angiogenesis in the Aged Brain
Cited by: 84
Author(s): Ana-Maria Buga, Claudiu Mărgăritescu, Claus‐Jürgen Scholz, Eugen Radu, Christine Zelenak, Aurel Popa‐Wagner
Software Mentions: 3
Published: over 10 years ago

10.3389/fnbeh.2013.00037

Microarray analyses reveal novel targets of exercise-induced stress resistance in the dorsal raphe nucleus
Cited by: 13
Author(s): Alice B. Loughridge, Benjamin N. Greenwood, Heidi E.W. Day, Matthew B. McQueen, Monika Fleshner
Software Mentions: 3
Published: almost 12 years ago

10.3389/fgene.2019.00123

Identification of Key lncRNAs Associated With Atherosclerosis Progression Based on Public Datasets
Cited by: 41
Author(s): Chuanhui Wang, Huigang Shi, Lin-Hui Chen, Xiaoli Li, Guoliang Cao, Xiaofeng Hu
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.583316

Key Modules and Hub Genes Identified by Coexpression Network Analysis for Revealing Novel Biomarkers for Spina Bifida
Cited by: 6
Author(s): Zijian Li, Juan Feng, Zhengwei Yuan
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2019.00800

Missense Pathogenic variants in KIF4A Affect Dental Morphogenesis Resulting in X-linked Taurodontism, Microdontia and Dens-Invaginatus
Cited by: 7
Author(s): Lord Jephthah Joojo Gowans, Sophia Cameron-Christie, Rebecca L. Slayton, Tamara Busch, Miguel Romero-Bustillos, Steven Eliason, Mason Sweat, Nara Sobreira, Wenjie Yu, Piranit Nik Kantaputra, Elizabeth Wohler, Wasiu Lanre Adeyemo, Salil A. Lachke, Deepti Anand, Colleen A. Campbell, Bernadette Drummond, David Markie, Wendy-Ann Jansen van Vuuren, Ludwig Jansen van Vuuren, Paul S. Casamassimo, Ronald L. Ettinger, Arwa I. Owais, I. van Staden, Brad A. Amendt, Adebowale Adeyemo, Jeffrey C. Murray, Stephen Robertson, Azeez Butali
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.637933

Analysis of m6A-Related Signatures in the Tumor Immune Microenvironment and Identification of Clinical Prognostic Regulators in Adrenocortical Carcinoma
Cited by: 51
Author(s): Y. Jin, Zhanwang Wang, Dong He, Yuxing Zhu, Xiaofang Hu, Lian Gong, Mengqing Xiao, Xingyu Chen, Ying Cheng, Ke Cao
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2020.599947

Interleukin 17 Promotes Expression of Alarmins S100A8 and S100A9 During the Inflammatory Response of Keratinocytes
Cited by: 25
Author(s): Carolin Christmann, Stefanie Zenker, Leonie Martens, Janina Hübner, Karin Loser, Thomas Vogl, Johannes Roth
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmolb.2020.565383

The Significance of Secreted Phosphoprotein 1 in Multiple Human Cancers
Cited by: 26
Author(s): Tengteng Wei, Guoshu Bi, Yunyi Bian, Suhong Ruan, Guangda Yuan, Haifeng Xie, Mengnan Zhao, Rongming Shen, Yimeng Zhu, Qun Wang, Yong Yang, Donglin Zhu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fnins.2020.00732

Electric Stimulation of Neurogenesis Improves Behavioral Recovery After Focal Ischemia in Aged Rats
Cited by: 14
Author(s): Adrian Tudor Bălșeanu, Monica Grigore, Leonard-Radu Pinosanu, Mark Slevin, Dirk M. Hermann, Daniela Glăvan, Aurel Popa‐Wagner
Software Mentions: 3
Published: over 4 years ago

10.3389/fnins.2012.00156

A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs
Cited by: 13
Author(s): Sergei A. Manakov, Andrew Morton, Anton J. Enright, Seth G. N. Grant
Software Mentions: 3
Published: almost 13 years ago

10.3389/fnins.2020.591196

Anticonvulsants and Chromatin-Genes Expression: A Systems Biology Investigation
Cited by: 1
Author(s): Thayne Woycinck Kowalski, João Luiz Ellera Gomes, Mariléa Furtado Feira, Ágata de Vargas Dupont, Mariana Recamonde‐Mendoza, Fernanda Sales Luiz Vianna
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2019.00812

Identification of a Specific Gene Module for Predicting Prognosis in Glioblastoma Patients
Cited by: 17
Author(s): Xiangjun Tang, Pengfei Xu, Bin Wang, Jie Luo, Rui Fu, Kuan‐Ming Huang, Long‐Jun Dai, Junti Lu, Gang Cao, Hao Peng, Li Zhang, Zhaohui Zhang, Qianxue Chen
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2020.566430

Hypoxia Correlates With Poor Survival and M2 Macrophage Infiltration in Colorectal Cancer
Cited by: 33
Author(s): Ling Qi, Jiani Chen, Yanmei Yang, Wangxiong Hu
Software Mentions: 3
Published: about 4 years ago

10.3389/fonc.2018.00374

Prognostic Genes of Breast Cancer Identified by Gene Co-expression Network Analysis
Cited by: 178
Author(s): Jianing Tang, Deguang Kong, Qiuxia Cui, Kun Wang, Dan Zhang, Yan Gong
Software Mentions: 3
Published: about 6 years ago

10.3389/fonc.2020.595182

A Combined Epithelial Mesenchymal Transformation and DNA Repair Gene Panel in Colorectal Cancer With Prognostic and Therapeutic Implication
Cited by: 2
Author(s): Xiaoliang Huang, Jungang Liu, Haizhou Liu, Xianwei Mo, Yongsheng Meng, Lihua Zhang, Yuqing Deng, Yawei Zhang, Weizhong Tang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.682917

Apigenin Inhibits the Histamine-Induced Proliferation of Ovarian Cancer Cells by Downregulating ERα/ERβ Expression
Cited by: 9
Author(s): Manman Liu, Yani Zhang, Qiqi Xu, Guirong Liu, Na Sun, Huilian Che, Tong‐Chuan He
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2021.595259

A Voxel-Based Radiographic Analysis Reveals the Biological Character of Proneural-Mesenchymal Transition in Glioblastoma
Cited by: 3
Author(s): Tengfei Qi, Xiangqi Meng, Zhenyu Wang, Xinyu Wang, Nan Sun, Jianguang Ming, Lejia Ren, Chuanlu Jiang, Jinquan Cai
Software Mentions: 3
Published: over 3 years ago

10.3389/fphar.2021.632206

LINC01116 Promotes Doxorubicin Resistance in Osteosarcoma by Epigenetically Silencing miR-424-5p and Inducing Epithelial-Mesenchymal Transition
Cited by: 11
Author(s): Ran Li, Qing Ruan, Jia Zheng, Butian Zhang, Hongliang Yang
Software Mentions: 3
Published: over 3 years ago

10.3389/fphar.2019.00574

LncRNA Profile Study Reveals a Three-LncRNA Signature Associated With the Pathological Complete Response Following Neoadjuvant Chemotherapy in Breast Cancer
Cited by: 20
Author(s): Ying Zeng, Wei Guo, Chengfang Zhou, Hai Bo Zhang, Hong Sun, Wei Zhang, Hong‐Hao Zhou, Rong Liu, Yuan‐Shan Zhu
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2016.00162

Downregulation of GSTK1 Is a Common Mechanism Underlying Hypertrophic Cardiomyopathy
Cited by: 38
Author(s): Shota Sasagawa, Yuhei Nishimura, Shiko Okabe, Soichiro Murakami, Yoshifumi Ashikawa, Mizuki Yuge, Koki Kawaguchi, Reiko Kawase, Ryuji Okamoto, Ito M, Toshio Tanaka
Software Mentions: 3
Published: over 8 years ago

10.3389/fphar.2019.00198

A Meta-Analysis of the Performance of a Blood-Based Exposure Response Gene Signature Across Clinical Studies on the Tobacco Heating System 2.2 (THS 2.2)
Cited by: 2
Author(s): Florian Martin, Marja Talikka, Nikolai V. Ivanov, Christelle Haziza, Julia Hoeng, Manuel C. Peitsch
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2019.01695

Ex Vivo Human Adipose Tissue Derived Mesenchymal Stromal Cells (ASC) Are a Heterogeneous Population That Demonstrate Rapid Culture-Induced Changes
Cited by: 21
Author(s): Anna Brooks, Megan Iminitoff, Eloise Williams, Tanvi Damani, Victoria Jackson-Patel, Vicky Fan, Joanna L. James, P. Rod Dunbar, Vaughan Feisst, Hilary Sheppard
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphar.2016.00119

E2F4 Promotes Neuronal Regeneration and Functional Recovery after Spinal Cord Injury in Zebrafish
Cited by: 11
Author(s): Shota Sasagawa, Yuhei Nishimura, Yuka Hayakawa, Soichiro Murakami, Yoshifumi Ashikawa, Mizuki Yuge, Shiko Okabe, Koki Kawaguchi, Reiko Kawase, Toshio Tanaka
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2014.00615

Bayesian phylogeny of sucrose transporters: ancient origins, differential expansion and convergent evolution in monocots and dicots
Cited by: 39
Author(s): Duo Peng, Xi Gu, Liang‐Jiao Xue, James H. Leebens‐Mack, Chung‐Jui Tsai
Software Mentions: 3
Published: about 10 years ago

10.1590/1678-4685-GMB-2017-0075

Differential gene expression profiles in peripheral blood in Northeast Chinese Han people with acute myocardial infarction
Cited by: 16
Author(s): Fan Lin, Heyu Meng, Xudong Guo, Xiangdong Li, F. Meng
Software Mentions: 3
Published: over 6 years ago

10.1186/gb-2006-7-2-r12

Cited by: 382
Author(s): Tobias Sargeant, Matthias Marti, Elisabet Caler, Jane M. Carlton, Ken M. Simpson, Terence P. Speed, Alan F. Cowman
Software Mentions: 3
Published: almost 19 years ago

10.1186/gb-2007-8-5-r81

Tilescope: online analysis pipeline for high-density tiling microarray data
Cited by: 41
Author(s): Zhengdong D. Zhang, Joel Rozowsky, Hugo Y. K. Lam, Jie Du, M Snyder, Mark Gerstein
Software Mentions: 3
Published: almost 18 years ago

10.1186/s13059-015-0583-7

Chromosome 7 gain and DNA hypermethylation at the HOXA10 locus are associated with expression of a stem cell related HOX-signature in glioblastoma
Cited by: 77
Author(s): Sebastian Kurscheid, Pierre Bady, Davide Sciuscio, Ivana Samaržija, Tal Shay, Irene Vassallo, Wim Van Criekinge, Roy Thomas Daniel, Martin J. van den Bent, Christine Marosi, Michael Weller, Warren P. Mason, Eytan Domany, Roger Stupp, Mauro Delorenzi, Monika E. Hegi
Software Mentions: 3
Published: almost 10 years ago

10.1186/gb-2005-6-2-r16

Cited by: 335
Author(s): Sung Choe, Michael Boutros, Alan D. Michelson, George M. Church, Marc S. Halfon
Software Mentions: 3
Published: almost 20 years ago

10.1093/gbe/evu199

Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production
Cited by: 39
Author(s): Dana J. Wohlbach, Nikolay Rovinskiy, Jeffrey A. Lewis, Maria Sardi, Wendy Schackwitz, Joel Martin, Shweta Deshpande, Christopher Daum, Anna Lipzen, Trey K. Sato, Audrey P. Gasch
Software Mentions: 3
Published: about 10 years ago

10.1186/gm433

Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction
Cited by: 96
Author(s): Gerald Quon, Syed Haider, Amit G. Deshwar, Ang Cui, Paul C. Boutros, Quaid Morris
Software Mentions: 3
Published: almost 12 years ago

10.1186/s41065-019-0096-6

Identification of five hub genes as monitoring biomarkers for breast cancer metastasis in silico
Cited by: 45
Author(s): Yun Cai, Jie Mei, Zhuang Xiao, Bujie Xu, Xiaozheng Jiang, Yongjie Zhang, Yichao Zhu
Software Mentions: 3
Published: over 5 years ago

10.1590/S1677-5538.IBJU.2020.1104

Exploration of the core genes in ulcerative interstitial cystitis/bladder pain syndrome
Cited by: 4
Author(s): Hao Wu, Qiuju Su, Ziyi Zhang, Ze Zhang, Shenglin Gao, Chen Lü, Li Zuo, Lifeng Zhang
Software Mentions: 3
Published: over 3 years ago

10.1186/s12931-020-01521-x

Expression of SARS-CoV-2 entry receptors in the respiratory tract of healthy individuals, smokers and asthmatics
Cited by: 35
Author(s): Magdalena Matusiak, Christian M. Schürch
Software Mentions: 3
Published: about 4 years ago

10.1038/sdata.2018.306

Transcriptomic profiles of tissues from rats treated with anticancer drug combinations
Cited by: 0
Author(s): Myrtle A. Davis, Enid M. Knight, Sandy Eldridge, Jianying Li, Pierre R. Bushel
Software Mentions: 3
Published: almost 6 years ago

10.1038/srep19820

Semantic interrogation of a multi knowledge domain ontological model of tendinopathy identifies four strong candidate risk genes
Cited by: 14
Author(s): Colleen Saunders, Mahjoubeh Jalali Sefid Dashti, Junaid Gamieldien
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-018-20959-0

Analysis of microRNA and Gene Expression Profiles in Alzheimer’s Disease: A Meta-Analysis Approach
Cited by: 76
Author(s): Shirin Moradifard, Moslem Hoseinbeyki, Shahla Mohammad Ganji, Zarrin Minuchehr
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-23609-7

Computational repositioning and preclinical validation of mifepristone for human vestibular schwannoma
Cited by: 13
Author(s): Jessica E. Sagers, Adam S. Brown, Saša Vasilijić, Rebecca Lewis, Mehmet İlhan Şahin, Lukas D. Landegger, Roy H. Perlis, Isaac S. Kohane, D. Bradley Welling, Chirag Patel, Konstantina M. Stanković
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-42680-2

Gene expression differences between matched pairs of ovarian cancer patient tumors and patient-derived xenografts
Cited by: 31
Author(s): Yuanhang Liu, Pritha Chanana, Jaime Davila, Xiaonan Hou, Valentina Zanfagnin, Cordelia D. McGehee, Ellen L. Goode, Eric C. Polley, Paul Haluska, S. John Weroha, Chen Wang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-57723-2

The FGF, TGFβ and WNT axis Modulate Self-renewal of Human SIX2+ Urine Derived Renal Progenitor Cells
Cited by: 28
Author(s): Shaifur Rahman, Wasco Wruck, Lucas‐Sebastian Spitzhorn, Lisa Nguyen, Martina Bohndorf, Soraia Martins, Fatima Asar, Audrey Ncube, Lars Erichsen, Nina Graffmann, James Adjaye
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-62516-8

Heterogeneity at the invasion front of triple negative breast cancer cells
Cited by: 13
Author(s): Koh Meng Aw Yong, Peter Ulintz, Sara Cáceres, Xu Cheng, Liwei Bao, Zhifen Wu, Evelyn Jiagge, Sofía D. Merajver
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-67114-2

Identification of key genes in ruptured atherosclerotic plaques by weighted gene correlation network analysis
Cited by: 16
Author(s): Biao Xu, Rui Li, Chunxia Huang, Binsheng He, Guangyi Li, Hong‐Shuo Sun, Zhong‐Ping Feng, Meihua Bao
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-97059-z

Gelatin methacrylate hydrogels culture model for glioblastoma cells enriches for mesenchymal-like state and models interactions with immune cells
Cited by: 6
Author(s): Nameeta Shah, Pavan M. Hallur, Raksha A. Ganesh, Pranali Sonpatki, Divya Naik, Komal Prasad Chandrachari, Ralph B. Puchalski, Aditya Chaubey
Software Mentions: 3
Published: about 3 years ago

10.1186/2193-1801-3-381

Coregulation of FANCA and BRCA1 in human cells
Cited by: 5
Author(s): Anneke Haitjema, Berber M. Mol, Irsan Kooi, Maarten P.G. Massink, Jens Al Jørgensen, Davy Rockx, Martin A. Rooimans, Johan P. de Winter, Hanne Meijers-Heijboer, Hans Joenje, Josephine C. Dorsman
Software Mentions: 3
Published: over 10 years ago

10.7150/thno.46460

Cisplatin prevents breast cancer metastasis through blocking early EMT and retards cancer growth together with paclitaxel
Cited by: 44
Author(s): Haitao Wang, Sen Guo, Seung Jin Kim, Fangyuan Shao, Joshua W. K. Ho, Kuan Un Wong, Zhengqiang Miao, Dapeng Hao, Ming Zhao, Jun Xu, Jianming Zeng, Koon Ho Wong, Lijun Di, Ada Hang Heng Wong, Xiaoling Xu, Chu Xia Deng
Software Mentions: 3
Published: almost 4 years ago

10.1128/mBio.00684-13

Genes Required for Aerial Growth, Cell Division, and Chromosome Segregation Are Targets of WhiA before Sporulation in Streptomyces venezuelae
Cited by: 96
Author(s): Matthew J. Bush, Maureen J. Bibb, Govind Chandra, Kim Findlay, Mark J. Buttner
Software Mentions: 3
Published: about 11 years ago

10.1128/mSphereDirect.00454-18

Most <i>Sinorhizobium meliloti</i> Extracytoplasmic Function Sigma Factors Control Accessory Functions
Cited by: 15
Author(s): Claus Lang, Melanie J. Barnett, Robert F. Fisher, Liane Smith, Michelle E. Diodati, Sharon R. Long
Software Mentions: 3
Published: about 6 years ago

10.7150/ijms.51145

Interactome analysis of gene expression profiles identifies CDC6 as a potential therapeutic target modified by miR-215-5p in hepatocellular carcinoma
Cited by: 7
Author(s): Hongfa Xu, Jianwen Huang, Shengni Hua, Linjun Liang, Xueling He, Meixiao Zhan, Ligong Lu, Jing Chu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13045-016-0247-4

Targeting of BMI-1 with PTC-209 shows potent anti-myeloma activity and impairs the tumour microenvironment
Cited by: 38
Author(s): Arnold Bolomsky, Karin Schlangen, Wolfgang Schreiner, Niklas Zojer, Heinz Ludwig
Software Mentions: 3
Published: over 8 years ago

10.1038/s41389-019-0146-y

RelB acts as a molecular switch driving chronic inflammation in glioblastoma multiforme
Cited by: 33
Author(s): Michael R. Waters, Angela Gupta, Karli Mockenhaupt, LaShardai N. Brown, Debolina D. Biswas, Tomasz Kordula
Software Mentions: 3
Published: over 5 years ago

10.1007/s00109-012-0925-9

Early steps of microglial activation are directly affected by neuroprotectant FK506 in both in vitro inflammation and in rat model of stroke
Cited by: 33
Author(s): Małgorzata Zawadzka, Michal Dabrowski, Agata Gozdz, Barbara Szadujkis, Marcin Sliwa, Maciej Lipko, Bożena Kamińska
Software Mentions: 3
Published: over 12 years ago

10.7554/eLife.13552

Neural clocks and Neuropeptide F/Y regulate circadian gene expression in a peripheral metabolic tissue
Cited by: 58
Author(s): Renske Erion, Anna N. King, Gang Wu, John B. Hogenesch, Amita Sehgal
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.23421

Defining the biological basis of radiomic phenotypes in lung cancer
Cited by: 229
Author(s): Patrick Großmann, Olya Stringfield, Nehmé El-Hachem, Marilyn M. Bui, Emmanuel Rios Velazquez, Chintan Parmar, Ralph T.H. Leijenaar, Benjamin Haibe‐Kains, Philippe Lambin, Robert J. Gillies, Hugo J.W.L. Aerts
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.67358

Drosophila STING protein has a role in lipid metabolism
Cited by: 22
Author(s): Katarina Akhmetova, Maxim Balasov, Igor Chesnokov
Software Mentions: 3
Published: about 3 years ago

10.3390/ijms21124516

IPSC-Derived Neuronal Cultures Carrying the Alzheimer’s Disease Associated TREM2 R47H Variant Enables the Construction of an Aβ-Induced Gene Regulatory Network
Cited by: 8
Author(s): Soraia Martins, Andreas Müller‐Schiffmann, Lars Erichsen, Martina Bohndorf, Wasco Wruck, Kristel Sleegers, Christine Van Broeckhoven, Carsten Korth, James Adjaye
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms21197101

Transcriptomic Profiling for the Autophagy Pathway in Colorectal Cancer
Cited by: 3
Author(s): Justyna Gil, Paweł Karpiński, Maria M. Sąsiadek
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms21218115

Fluid Shear Stress Induces EMT of Circulating Tumor Cells via JNK Signaling in Favor of Their Survival during Hematogenous Dissemination
Cited by: 28
Author(s): Ying Xiao, Keming Li, Mo Yang, Youhua Tan
Software Mentions: 3
Published: about 4 years ago

10.3390/ijms22115902

NKL Homeobox Gene VENTX Is Part of a Regulatory Network in Human Conventional Dendritic Cells
Cited by: 6
Author(s): Stefan Nagel, Claudia Pommerenke, Corinna Meyer, Hans Drexler
Software Mentions: 3
Published: over 3 years ago

10.18632/oncotarget.6503

Towards understanding the breast cancer epigenome: a comparison of genome-wide DNA methylation and gene expression data
Cited by: 16
Author(s): Sandeep K. Singhal, Nawaid Usmani, Stefan Michiels, Otto Metzger‐Filho, Kamal S. Saini, Olga Kovalchuk, Matthew Parliament
Software Mentions: 3
Published: almost 9 years ago

10.18632/oncotarget.8148

Challenges in detecting pre-malignant pancreatic lesions during acute pancreatitis using a serum microRNA assay: a study based on <i>KrasG12D</i> transgenic mice
Cited by: 8
Author(s): Xiafei Hong, Jie Zhang, Qiao Wu, Wenze Wang, Adam Yongxin Ye, Wei Song, Hongmei Dai, Xiaohong Wang, Fan Wu, Lei You, Wenming Wu, Yupei Zhao
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.9982

Deregulation of polycomb repressor complex 1 modifier AUTS2 in T-cell leukemia
Cited by: 14
Author(s): Stefan Nagel, Claudia Pommerenke, Corinna Meyer, Maren Kaufmann, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.10249

Gene network analysis reveals a novel 22-gene signature of carbon metabolism in hepatocellular carcinoma
Cited by: 16
Author(s): Jinqiang Zhang, Melody Baddoo, Chang Han, Michael J. Strong, Jennifer Cvitanovic, Krzysztof Moroz, Srikanta Dash, Erik K. Flemington, Tong Wu
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.11524

Subclones in B-lymphoma cell lines: isogenic models for the study of gene regulation
Cited by: 6
Author(s): Hilmar Quentmeier, Claudia Pommerenke, Ole Ammerpohl, Robert Geffers, Vivien Hauer, Roderick A.F. MacLeod, Stefan Nagel, Julia Romani, Emanuela Rosati, Anders Rosén, Cord C. Uphoff, Margarete Zaborski, Hans Drexler
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.19078

Data-driven analysis of immune infiltrate in a large cohort of breast cancer and its association with disease progression, ER activity, and genomic complexity
Cited by: 28
Author(s): Ruth Dannenfelser, Marianne Eikhom Nome, Andliena Tahiri, Josie Ursini‐Siegel, Hans Kristian Moen Vollan, Vilde Drageset Haakensen, Åslaug Helland, Bjørn Naume, Carlos Caldas, Anne‐Lise Børresen‐Dale, Vessela N. Kristensen, Olga G. Troyanskaya
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.18609

NKL homeobox gene MSX1 acts like a tumor suppressor in NK-cell leukemia
Cited by: 15
Author(s): Stefan Nagel, Claudia Pommerenke, Corinna Meyer, Maren Kaufmann, Roderick A.F. MacLeod, Hans G. Drexler
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.24512

Aberrant expression of NKL homeobox gene HLX in Hodgkin lymphoma
Cited by: 12
Author(s): Stefan Nagel, Claudia Pommerenke, Corinna Meyer, Maren Kaufmann, Roderick A.F. MacLeod, Hans Drexler
Software Mentions: 3
Published: almost 7 years ago

10.18632/oncotarget.26459

NKL homeobox gene NKX2-2 is aberrantly expressed in Hodgkin lymphoma
Cited by: 15
Author(s): Stefan Nagel, Roderick A.F. MacLeod, Claudia Pommerenke, Corinna Meyer, Maren Kaufmann, Hans G. Drexler
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.27683

The NKL-code for innate lymphoid cells reveals deregulated expression of NKL homeobox genes HHEX and HLX in anaplastic large cell lymphoma (ALCL)
Cited by: 12
Author(s): Stefan Nagel, Claudia Pommerenke, Roderick A.F. MacLeod, Corinna Meyer, Maren Kaufmann, Hans Drexler
Software Mentions: 3
Published: about 4 years ago

10.1186/s12967-019-1790-x

Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke
Cited by: 60
Author(s): Rongjun Zou, Dingwen Zhang, Lei Lv, Wu Shi, Zilin Song, Bin Yi, Bingjia Lai, Qian Chen, Shiming Yang, Peng Hua
Software Mentions: 3
Published: almost 6 years ago

10.1186/1479-5876-6-69

Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers
Cited by: 55
Author(s): Astrid Rohrbeck, Judith Neukirchen, Michael Rosskopf, Guillermo G Pardillos, Helene Geddert, Andreas Schwalen, Helmut E. Gabbert, Arndt von Haeseler, Gerald Pitschke, M. Schott, Ralf Kronenwett, Rainer Haas, Ulrich-Peter Rohr
Software Mentions: 3
Published: about 16 years ago

10.1523/ENEURO.0226-19.2019

Mega-Analysis of Gene Expression in Mouse Models of Alzheimer’s Disease
Cited by: 6
Author(s): Beryl Zhuang, B. Ogan Mancarci, Lilah Toker, Paul Pavlidis
Software Mentions: 3
Published: about 5 years ago

10.1128/mSphere.00276-20

Genomewide Stabilization of mRNA during a “Feast-to-Famine” Growth Transition in Escherichia coli
Cited by: 10
Author(s): Manon Morin, Brice Enjalbert, Delphine Ropers, Laurence Girbal, Muriel Cocaign‐Bousquet
Software Mentions: 2
Published: over 4 years ago

10.1016/j.celrep.2017.06.039

Microbial-Host Co-metabolites Are Prodromal Markers Predicting Phenotypic Heterogeneity in Behavior, Obesity, and Impaired Glucose Tolerance
Cited by: 72
Author(s): Marc Dumas, Alice Rothwell, Lesley Hoyles, Thomas Aranias, Julien Chilloux, Sophie Caldérari, Elisa M. Noll, Noémie Péan, Claire Boulangé, Christine Blancher, Richard H. Barton, Quan Gu, Jane Fearnside, Chloé Deshayes, Christophe Hue, James A. Scott, Jeremy K. Nicholson, Dominique Guyader
Software Mentions: 2
Published: over 7 years ago

10.1186/s13075-021-02451-9

Transcriptome-wide study of TNF-inhibitor therapy in rheumatoid arthritis reveals early signature of successful treatment
Cited by: 11
Author(s): James A. C. Oliver, Nisha Nair, Gisela Orozco, Samantha Smith, Kimme L Hyrich, Ann W Morgan, John D. Isaacs, Anthony G. Wilson, Anne Barton, Darren Plant
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.698835

SNAP25 Inhibits Glioma Progression by Regulating Synapse Plasticity via GLS-Mediated Glutaminolysis
Cited by: 13
Author(s): Qiongzhen Huang, Changlin Lian, Yaoyuan Dong, Huijun Zeng, Boyang Liu, Ningbo Xu, Zhenyan He
Software Mentions: 2
Published: over 3 years ago

10.1186/bcr2928

Transcriptome analysis of embryonic mammary cells reveals insights into mammary lineage establishment
Cited by: 44
Author(s): Olivia Wansbury, Alan Mackay, Naoko Kogata, Costas Mitsopoulos, Howard Kendrick, Kathryn Davidson, Christiana Ruhrberg, Jorge S. Reis‐Filho, Matthew J. Smalley, Marketa Zvelebil, Beatrice A. Howard
Software Mentions: 2
Published: over 13 years ago

10.1186/bcr3211

Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression
Cited by: 87
Author(s): Todd P. Knutson, Andrea R. Daniel, Danhua Fan, Kevin A.T. Silverstein, Kyle R. Covington, Suzanne A.W. Fuqua, Carol A. Lange
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2105-11-276

Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes
Cited by: 51
Author(s): Birte Hellwig, Jan G. Hengstler, Marcus Schmidt, Mathias Gehrmann, Wiebke Schormann, Jörg Rahnenführer
Software Mentions: 2
Published: over 14 years ago

10.1038/s41408-018-0129-9

Role of apurinic/apyrimidinic nucleases in the regulation of homologous recombination in myeloma: mechanisms and translational significance
Cited by: 36
Author(s): Subodh Kumar, Srikanth Talluri, Jagannath Pal, Xiaoli Yuan, Renquan Lu, Puru Nanjappa, Mehmet K. Samur, Nikhil C. Munshi, Masood A. Shammas
Software Mentions: 2
Published: about 6 years ago

10.1155/2021/9978206

Prognostic Nomogram Based on Circular RNA-Associated Competing Endogenous RNA Network for Patients with Lung Adenocarcinoma
Cited by: 7
Author(s): Yang Li, Ryan Sun, Rui Li, Yonggang Chen, Du He
Software Mentions: 2
Published: about 3 years ago

10.1186/1742-2094-11-104

A role for human brain pericytes in neuroinflammation
Cited by: 118
Author(s): Deidre Jansson, Justin Rustenhoven, Sheryl Feng, Daniel Hurley, Robyn Oldfield, Peter Bergin, Edward Mee, Richard L.M. Faull, Mike Dragunow
Software Mentions: 2
Published: over 10 years ago

10.1042/BSR20201084

Integrative genomics analysis identifies five promising genes implicated in insomnia risk based on multiple omics datasets
Cited by: 7
Author(s): Haozhen Sun, Jianhua Zhang, Yunlong Ma, Jingjing Liu
Software Mentions: 2
Published: about 4 years ago

10.1186/1471-2105-10-77

Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees
Cited by: 9
Author(s): Donna M. Toleno, Gabriel Renaud, Tyra G. Wolfsberg, Munirul Islam, Derek E. Wildman, Kimberly D. Siegmund, Joseph G. Hacia
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2105-11-121

Mayday - integrative analytics for expression data
Cited by: 107
Author(s): Florian Battke, Stephan Symons, Kay Nieselt
Software Mentions: 2
Published: over 14 years ago

10.1042/BSR20191481

Circulating lncRNA DANCR as a potential auxillary biomarker for the diagnosis and prognostic prediction of colorectal cancer
Cited by: 28
Author(s): Xianjuan Shen, Yuzheng Xue, Hui Cong, Xudong Wang, Zusen Fan, Xiaopeng Cui, Shaoqing Ju
Software Mentions: 2
Published: over 4 years ago

10.1042/BSR20191612

Bioinformatics-based discovery of PYGM and TNNC2 as potential biomarkers of head and neck squamous cell carcinoma
Cited by: 18
Author(s): Yu Jin, Ya Yang
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/6663367

Upregulation of CDC7 Associated with Cervical Cancer Incidence and Development
Cited by: 2
Author(s): Qingwei Wang, Wenjie Zheng
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/1363827

Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers
Cited by: 2
Author(s): Michael Kenn, Dan Cacsire Castillo‐Tong, Christian F. Singer, Michael Cibena, H. Kölbl, Wolfgang Schreiner
Software Mentions: 2
Published: over 4 years ago

10.1155/2019/8567306

Integration of Gene Expression Profile Data of Human Epicardial Adipose Tissue from Coronary Artery Disease to Verification of Hub Genes and Pathways
Cited by: 13
Author(s): Weitie Wang, Qing Liu, Yong Wang, Hulin Piao, Bo Li, Zhicheng Zhu, Dan Li, Tiance Wang, Rihao Xu, Kexiang Liu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2014.00046

Role of callose synthases in transfer cell wall development in tocopherol deficient Arabidopsis mutants
Cited by: 31
Author(s): Hiroshi Maéda, Wan Song, Tammy L. Sage, Dean DellaPenna
Software Mentions: 2
Published: almost 11 years ago

10.1155/2018/9416515

Bioinformatics Analysis Reveals Most Prominent Gene Candidates to Distinguish Colorectal Adenoma from Adenocarcinoma
Cited by: 25
Author(s): Nina Hauptman, Emanuela Boštjančič, Margareta Žlajpah, Branislava Ranković, Nina Zidar
Software Mentions: 2
Published: over 6 years ago

10.1186/s40478-014-0134-6

Pax3 expression enhances PDGF-B-induced brainstem gliomagenesis and characterizes a subset of brainstem glioma
Cited by: 25
Author(s): Katherine L. Misuraca, Kelly L. Barton, Alexander H. Chung, Alexander K. Diaz, Simon J. Conway, David L. Corcoran, Suzanne J. Baker, Oren J. Becher
Software Mentions: 2
Published: about 10 years ago

Projects: bioconductor: affy

Papers Mentioning affy 989