bioconductor: affy | Projects | Ecosyste.ms: Papers

10.1186/1476-4598-12-158

Reduced tumorigenicity and pathogenicity of cervical carcinoma SiHa cells selected for resistance to cidofovir
Cited by: 9
Author(s): Tim De Schutter, Gracíela Andrei, Dimitrios Topalis, Sophie Duraffour, Tania Mitera, Joost van den Oord, Patrick Matthys, Robert Snoeck
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms19061761

Quality Assessment of Surgical Disc Samples Discriminates Human Annulus Fibrosus and Nucleus Pulposus on Tissue and Molecular Level
Cited by: 18
Author(s): Ann-Kathrin Schubert, Jeske J. Smink, Mirko Arp, Jochen Ringe, Aldemar Andrés Hegewald, Michael Sittinger
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2105-10-S11-S4

Threshold selection in gene co-expression networks using spectral graph theory techniques
Cited by: 73
Author(s): Andy D. Perkins, Michael A. Langston
Software Mentions: 1
Published: over 14 years ago

10.1186/scrt35

Von willebrand factor increases endothelial cell adhesiveness for human mesenchymal stem cells by activating p38 mitogen-activated protein kinase
Cited by: 9
Author(s): Irina Potapova, Ira S. Cohen, Sergey V. Doronin
Software Mentions: 1
Published: over 13 years ago

10.1186/s12943-019-0955-9

Nuclear lncRNA HOXD-AS1 suppresses colorectal carcinoma growth and metastasis via inhibiting HOXD3-induced integrin β3 transcriptional activating and MAPK/AKT signalling
Cited by: 72
Author(s): Mei Yang, Li Zhao, Lan Wang, Wen Ouyang, Shasha Hu, Li Wenlu, Mei-Ling Ai, Yiqing Wang, Yue Han, Tingting Li, Yan‐Qing Ding, Shuang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/1476-4598-3-27

Cited by: 44
Author(s): Susanne Warrenfeltz, Stephen Pavlik, Susmita Datta, Eileen Kraemer, Benedict B. Benigno, John F. McDonald
Software Mentions: 1
Published: over 20 years ago

10.3389/fimmu.2017.01538

Identification of Secretory Leukoprotease Inhibitor As an Endogenous Negative Regulator in Allergic Effector Cells
Cited by: 9
Author(s): Shintaro Matsuba, Toshiki Yabe-Wada, Kazuya Takeda, Tetsuya Sato, Mikita Suyama, Toshiyuki Takai, Toshiaki Kikuchi, Toshihiro Nukiwa, Akira Nakamura
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-12-26

Selenium toxicity but not deficient or super-nutritional selenium status vastly alters the transcriptome in rodents
Cited by: 75
Author(s): Anna M. Raines, Roger A. Sunde
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0193249

Subtype assignment of CLL based on B-cell subset associated gene signatures from normal bone marrow – A proof of concept study
Cited by: 8
Author(s): Caroline Holm Nørgaard, Lasse Hjort Jakobsen, Andrew J. Gentles, Karen Dybkær, Tarec Christoffer El‐Galaly, Julie Støve Bødker, Alexander Schmitz, Preben Johansen, Tobias Herold, Karsten Spiekermann, Jennifer R. Brown, Josephine L. Klitgaard, Hans Erik Johnsen, Martin Bøgsted
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.02685

Comparative Transcriptomic and Metagenomic Analyses of Influenza Virus-Infected Nasal Epithelial Cells From Multiple Individuals Reveal Specific Nasal-Initiated Signatures
Cited by: 12
Author(s): Kai Sen Tan, Yan Yan, Wai Ling Hiromi Koh, Liang Li, Hyungwon Choi, Thai Tran, Richard J. Sugrue, De Yun Wang, Vincent T. K. Chow
Software Mentions: 1
Published: over 5 years ago

10.3892/ol.2014.2070

Bioinformatics analyses combined microarray identify the deregulated microRNAs in oral cancer
Cited by: 12
Author(s): Jing Cui, Dalu Li, Wenmei Zhang, Liang Shen, Xin Xu
Software Mentions: 1
Published: about 10 years ago

10.3389/fmolb.2021.587516

Systematic and Multi-Omics Prognostic Analysis of Lysine Acetylation Regulators in Glioma
Cited by: 3
Author(s): Zewei Tu, Lei Wu, Haitao Luo, Jingying Li, Shan Lv, Minhua Ye, Feng Liu, Chuming Tao, Xingen Zhu, Kai Huang
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0065741

Multi-Targeted Mechanisms Underlying the Endothelial Protective Effects of the Diabetic-Safe Sweetener Erythritol
Cited by: 22
Author(s): Daniëlle M. P. H. J. Boesten, Alvin Berger, Peter de Cock, Hua Dong, Bruce D. Hammock, G.J.M. den Hartog, Aalt Bast
Software Mentions: 1
Published: almost 11 years ago

10.1038/cddis.2015.14

The calcineurin/NFAT pathway is activated in diagnostic breast cancer cases and is essential to survival and metastasis of mammary cancer cells
Cited by: 79
Author(s): Christine Tran Quang, Sophie Leboucher, Diana Passaro, Laetitia Fuhrmann, Maya Nourieh, Anne Vincent‐Salomon, Jacques Ghysdael
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-11-323

Transcript profiling of two alfalfa genotypes with contrasting cell wall composition in stems using a cross-species platform: optimizing analysis by masking biased probes
Cited by: 19
Author(s): Shanshan Yang, Wayne Xu, Mesfin Tesfaye, J. F. S. Lamb, H. G. Jung, Kathryn A. VandenBosch, Carroll P. Vance, John W. Gronwald
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-6-57

Cited by: 63
Author(s): John R. Stevens, R. W. Doerge
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-6-80

Cited by: 47
Author(s): Alexander Ploner, Lance D. Miller, Per Hall, Jonas Bergh, Yudi Pawitan
Software Mentions: 1
Published: over 19 years ago

10.1155/2021/3284186

Analysis of the Significance of Immune Cell Infiltration and Prognosis of Non-Small-Cell Lung Cancer by Bioinformatics
Cited by: 0
Author(s): Heng Sun, Bowen Sui, Yu Liu, Jun Yan, Mingming Cao, Lijia Zhang, Songjiang Liu
Software Mentions: 1
Published: over 2 years ago

10.1371/journal.pone.0114133

MYC Is an Early Response Regulator of Human Adipogenesis in Adipose Stem Cells
Cited by: 23
Author(s): Chad Deisenroth, Michael B. Black, Salil N. Pendse, Linda Pluta, Sam M. Witherspoon, Patrick D. McMullen, Russell S. Thomas
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-3319-5

Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri
Cited by: 23
Author(s): Vasantika Suryawanshi, Ina N. Talke, Michael Weber, Roland Eils, Benedikt Brors, Stephan Clemens, Ute Krämer
Software Mentions: 1
Published: over 7 years ago

10.26508/lsa.201800244

MicroRNA-155 is essential for the optimal proliferation and survival of plasmablast B cells
Cited by: 15
Author(s): Giuseppina Arbore, Tom Henley, Laura Biggins, Simon Andrews, Elena Vigorito, Martin Turner, Rebecca Leyland
Software Mentions: 1
Published: about 5 years ago

10.3390/jcm9103299

Transcriptomic Profile of Genes Encoding Proteins Involved in Pathogenesis of Sjögren’s Syndrome Related Xerostomia—Molecular and Clinical Trial
Cited by: 4
Author(s): Katarzyna Błochowiak, Piotr Celichowski, Bartosz Kempisty, Katarzyna Iwanik, Michał Nowicki
Software Mentions: 1
Published: over 3 years ago

10.1038/s41375-020-01095-z

miR-10a as a therapeutic target and predictive biomarker for MDM2 inhibition in acute myeloid leukemia
Cited by: 19
Author(s): Thị Thanh Huyền Vũ, Friedrich Stölzel, Kristy W. Wang, Christoph Röllig, Melinda L. Tursky, Timothy J. Molloy, David Df
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0193173

MicroRNA profiling in plasma samples using qPCR arrays: Recommendations for correct analysis and interpretation
Cited by: 41
Author(s): Andreas B. Gevaert, Isabel Witvrouwen, Christiaan J. Vrints, Hein Heidbüchel, Emeline M. Van Craenenbroeck, Steven J. Van Laere, Amaryllis H. Van Craenenbroeck
Software Mentions: 1
Published: about 6 years ago

10.1093/jxb/erw170

Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism
Cited by: 21
Author(s): Carmen M. Pérez-Delgado, Tomás C. Moyano, Margarita García‐Calderón, Javier Canales, Rodrigo A. Gutiérrez, Antonio J. Márquez, Marco Betti
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2105-14-279

Archetypal analysis of diverse Pseudomonas aeruginosatranscriptomes reveals adaptation in cystic fibrosis airways
Cited by: 43
Author(s): Juliane Charlotte Thøgersen, Morten Mørup, Søren Damkiær, Søren Molin, Lars Jelsbak
Software Mentions: 1
Published: over 10 years ago

10.1002/cam4.3407

The MDM2 inhibitor CGM097 combined with the BET inhibitor OTX015 induces cell death and inhibits tumor growth in models of neuroblastoma
Cited by: 9
Author(s): Tyler Maser, Joseph Zagorski, Shannon Kelly, Anna Ostrander, Austin Goodyke, Abhinav B. Nagulapally, Jeffrey P. Bond, Yeonhee Park, Giselle L. Saulnier Sholler
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.0030021

Yeast Functional Genomic Screens Lead to Identification of a Role for a Bacterial Effector in Innate Immunity Regulation
Cited by: 85
Author(s): Roger Kramer, Naomi L Slagowski, Ngozi A. Eze, Kara S. Giddings, Monica F Morrison, Keri A. Siggers, Michael N. Starnbach, Cammie F. Lesser
Software Mentions: 1
Published: over 17 years ago

10.1002/cam4.1900

A novel lncRNA-miRNA-mRNA network analysis identified the hub lncRNA RP11-159F24.1 in the pathogenesis of papillary thyroid cancer
Cited by: 9
Author(s): Wei Jiang, Hong Zhan, Yanyan Jiao, Sha Li, Weixu Gao
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2020.01180

CCND2 mRNA Expression Is Correlated With R-CHOP Treatment Efficacy and Prognosis in Patients With ABC-DLBCL
Cited by: 7
Author(s): Di Wang, Yue Zhang, Yi‐Qun Che
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00262-018-2289-7

Immune cell infiltration as a biomarker for the diagnosis and prognosis of stage I–III colon cancer
Cited by: 177
Author(s): Rui Zhou, Jingwen Zhang, Dongqiang Zeng, Huiying Sun, Xiaoxiang Rong, Min Shi, Jianping Bin, Yulin Liao, Wangjun Liao
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jmb.2009.04.032

Ectopic Recombination of a Malaria var Gene during Mitosis Associated with an Altered var Switch Rate
Cited by: 47
Author(s): Michael Duffy, Timothy Byrne, Céline Carret, Alasdair Ivens, Graham V. Brown
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1003668

Salmonella Modulation of Host Cell Gene Expression Promotes Its Intracellular Growth
Cited by: 61
Author(s): Sebastian Hannemann, Beile Gao, Jorge E. Galán
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0103327

Translational Validation of Personalized Treatment Strategy Based on Genetic Characteristics of Glioblastoma
Cited by: 23
Author(s): Young Taek Oh, Hee Jin Cho, Jin‐Kuk Kim, Ji Hyun Lee, Kyoohyoung Rho, Yun Jee Seo, Yuna Choi, Hye Jin Jung, Hyeon Suk Song, Doo Sik Kong, Ho Jun Seol, Jung Il Lee, Yong‐Ho Yoon, Sung Hoon Kim, Do Hyun Nam, Kyeung Min Joo
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-9-194

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
Cited by: 7
Author(s): Huanying Ge, Chao Cheng, Lei M. Li
Software Mentions: 1
Published: about 16 years ago

10.1007/s13238-019-0629-9

PCGF6 regulates stem cell pluripotency as a transcription activator via super-enhancer dependent chromatin interactions
Cited by: 5
Author(s): Xiaona Huang, Chao Wei, Fenjie Li, Lumeng Jia, Pengguihang Zeng, Jiahe Li, Tan Jin, Tuanfeng Sun, Shaoshuai Jiang, Jia Wang, Xiuxiao Tang, Qingquan Zhao, Bin Liu, Limin Rong, Cheng Li, Junjun Ding
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2019.00371

HNCDB: An Integrated Gene and Drug Database for Head and Neck Cancer
Cited by: 5
Author(s): Qingbin Zhang, Xingyang Li, Xuan Su, Hongwan Zhang, Hanbing Wang, Sanjun Yin, Xiao-Qing Pei, Ankui Yang, Zhixiang Zuo
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0004977

Comparison of Gene Expression Profile in Embryonic Mesencephalon and Neuronal Primary Cultures
Cited by: 12
Author(s): Dario Greco, Floriana Volpicelli, Andrea Di Lieto, Damiana Leo, Carla Perrone-Capano, Petri Auvinen, Umberto di Porzio
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0035640

Differential Evolutionary Wiring of the Tyrosine Kinase Btk
Cited by: 4
Author(s): Hossain M. Nawaz, Per Kylsten, Norio Hamada, Daisuke Yamamoto, C. I. Edvard Smith, Jessica M. Lindvall
Software Mentions: 1
Published: about 12 years ago

10.3389/fonc.2021.682710

SLC25A21 Suppresses Cell Growth in Bladder Cancer via an Oxidative Stress-Mediated Mechanism
Cited by: 4
Author(s): Yong Wang, Jiawen Gao, Shasha Hu, Weiting Zeng, Hongjun Yang, Hui Chen, Shuang Wang
Software Mentions: 1
Published: over 2 years ago

10.1186/s12885-015-1569-2

Elevated C1orf63 expression is correlated with CDK10 and predicts better outcome for advanced breast cancers: a retrospective study
Cited by: 12
Author(s): Chao‐Qun Hong, Fan Zhang, Yanjie You, Qiu Wei-li, Armando E. Giuliano, Xiaojiang Cui, Guojun Zhang, Yukun Cui
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12284-018-0241-2

Genome-wide analysis of root hair-preferential genes in rice
Cited by: 11
Author(s): Sunok Moon, Anil Kumar Nalini Chandran, Gynheung An, Chanhui Lee, Ki‐Hong Jung
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-020-01806-5

Hypoxia-sensitive long noncoding RNA CASC15 promotes lung tumorigenesis by regulating the SOX4/β-catenin axis
Cited by: 12
Author(s): Jian‐Yong Sun, Yanlu Xiong, Kuo Jiang, Bo Xin, Tongtong Jiang, Renji Wei, Yuankang Zou, Hong Tan, Tao Jiang, An–Gang Yang, Lintao Jia, Lei Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.719812

Identification of Tumor Microenvironment-Related Prognostic lncRNAs in Lung Adenocarcinoma
Cited by: 2
Author(s): Ligong Yuan, Feng Li, Shuaibo Wang, Hang Yi, Fang Li, Yousheng Mao
Software Mentions: 1
Published: almost 3 years ago

10.1186/bcr3329

Co-expression of HER2 and HER3 receptor tyrosine kinases enhances invasion of breast cells via stimulation of interleukin-8 autocrine secretion
Cited by: 46
Author(s): Nicola Aceto, Stephan Duss, Gwen MacDonald, Dominique Meyer, Tim-C Roloff, Nancy E. Hynes, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 11 years ago

10.1186/s12885-019-5982-9

Silencing of miR-182 is associated with modulation of tumorigenesis through apoptosis induction in an experimental model of colorectal cancer
Cited by: 19
Author(s): Lisa Perilli, Sofia Tessarollo, Laura Albertoni, Matteo Curtarello, Anna Pastò, Efrem Brunetti, Matteo Fassan, Massimo Rugge, Stefano Indraccolo, Alberto Amadori, Stefania Bortoluzzi, Paola Zanovello
Software Mentions: 1
Published: over 4 years ago

10.1155/2014/708562

Characterization of Genes for Beef Marbling Based on Applying Gene Coexpression Network
Cited by: 16
Author(s): Dajeong Lim, Nam-Kuk Kim, Seung H. Lee, Hye-Sun Park, Yong-Min Cho, Han-Ha Chai, Heebal Kim
Software Mentions: 1
Published: over 10 years ago

10.1186/bcr3419

Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium
Cited by: 86
Author(s): Fabienne Meier-Abt, Emanuela S. Milani, Tim Roloff, Heike Brinkhaus, Stephan Duss, Dominique Meyer, Ina Klebba, Piotr J. Balwierz, Erik van Nimwegen, Mohamed Bentires‐Alj
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-10-129

Detection of genomic deletions in rice using oligonucleotide microarrays
Cited by: 36
Author(s): Myron Bruce, Ann Hess, Jianfa Bai, Ramil Mauleon, Maria Genaleen Q. Diaz, Noboru Sugiyama, Alicia Bordeos, Guo‐Liang Wang, Hei Leung, Jan E. Leach
Software Mentions: 1
Published: about 15 years ago

10.1038/srep11593

Ion channel gene expression predicts survival in glioma patients
Cited by: 38
Author(s): Rong Wang, Christopher I. Gurguis, Wanjun Gu, Eun A. Ko, Inja Lim, Hyoweon Bang, Tong Zhou, Jae Hong Ko
Software Mentions: 1
Published: almost 9 years ago

10.1177/1178223420934447

Evaluation of Gene Expression Data From Cybrids and Tumours Highlights Elevated <i>NDRG1</i>-Driven Proliferation in Triple-Negative Breast Cancer
Cited by: 6
Author(s): Akanksha Mishra, Maria Bonello, Adam Byron, Simon P. Langdon, Andrew H. Sims
Software Mentions: 1
Published: over 4 years ago

10.1038/srep14324

Leveraging existing data sets to generate new insights into Alzheimer’s disease biology in specific patient subsets
Cited by: 15
Author(s): Kevin Fowler, Jason Funt, Maxim N. Artyomov, Benjamin Zeskind, Sarah Kolitz, Fadi Towfic
Software Mentions: 1
Published: over 8 years ago

10.1038/s41416-019-0404-y

Cell lines and immune classification of glioblastoma define patient’s prognosis
Cited by: 15
Author(s): Quentin Klopfenstein, Caroline Truntzer, Julie Vincent, François Ghiringhelli
Software Mentions: 1
Published: about 5 years ago

10.1038/srep18494

Using activation status of signaling pathways as mechanism-based biomarkers to predict drug sensitivity
Cited by: 38
Author(s): Alicia Amadoz, Patricia Sebastián-León, Enrique Vidal, Francisco Salavert, Joaquín Dopazo
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21228530

Astaxanthin Counteracts Vascular Calcification In Vitro Through an Early Up-Regulation of SOD2 Based on a Transcriptomic Approach
Cited by: 12
Author(s): Chia‐Ter Chao, Hsiang‐Yuan Yeh, You-Tien Tsai, Tzu‐Hang Yuan, Min-Tser Liao, Jenq‐Wen Huang, Huei‐Wen Chen
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-015-1372-0

Chromosomal instability as a prognostic marker in cervical cancer
Cited by: 18
Author(s): Christine How, Jeff Bruce, Jonathan So, Melania Pintilie, Benjamin Haibe‐Kains, Angela Bik‐Yu Hui, Blaise A. Clarke, David W. Hedley, Richard P. Hill, Michael Milosevic, Anthony Fyles, Fei‐Fei Liu
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.15283

Calcium-regulatory proteins as modulators of chemotherapy in human neuroblastoma
Cited by: 23
Author(s): Ana Florea, Elizabeth Varghese, Jennifer E. McCallum, Safa Mahgoub, Irfan Helmy, Sharon Varghese, Neha Gopinath, Steffen Sass, Fabian J. Theis, Guido Reifenberger, Dietrich Büsselberg
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-350

Toxoplasma gondii merozoite gene expression analysis with comparison to the life cycle discloses a unique expression state during enteric development
Cited by: 65
Author(s): Michael S. Behnke, Tiange P. Zhang, J. P. Dubey, L. David Sibley
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers12030570

Diversity of Clinically Relevant Outcomes Resulting from Hypofractionated Radiation in Human Glioma Stem Cells Mirrors Distinct Patterns of Transcriptomic Changes
Cited by: 9
Author(s): Darius Kalasauskas, Maxim Sorokin, Bettina Sprang, Alhassan Elmasri, Sina Viehweg, Gabriela Salinas, Lennart Opitz, Margret Rave‐Fraenk, Walter Schulz‐Schaeffer, Sven R. Kantelhardt, Alf Giese, Anton Buzdin, Ella L. Kim
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-017-01500-1

Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates
Cited by: 12
Author(s): Johan Nyström-Persson, Yayoi Natsume-Kitatani, Yoshinobu Igarashi, Daisuke Satoh, Kenji Mizuguchi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-03540-z

Natural variation in Arabidopsis thaliana Cd responses and the detection of quantitative trait loci affecting Cd tolerance
Cited by: 14
Author(s): Sina Fischer, Thomas Spielau, Stephan Clemens
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-05298-w

Differential co-expression analysis reveals a novel prognostic gene module in ovarian cancer
Cited by: 53
Author(s): Esra Göv, Kazım Yalçın Arğa
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0105985

Regionally-Specified Second Trimester Fetal Neural Stem Cells Reveals Differential Neurogenic Programming
Cited by: 6
Author(s): Yiping Fan, Guillaume Marcy, Eddy S. M. Lee, Steve Rozen, Citra Nurfarah Zaini Mattar, Simon N. Waddington, Eyleen L. K. Goh, Mahesh Choolani, Jerry Ky Chan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0160344

Threshold Levels of Gfi1 Maintain E2A Activity for B Cell Commitment via Repression of Id1
Cited by: 12
Author(s): Jennifer Fraszczak, Anne Helness, Riyan Chen, Charles Vadnais, François Robert, Cyrus Khandanpour, Tarik Möröy
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0069435

Effects of the Plant Growth-Promoting Bacterium Burkholderia phytofirmans PsJN throughout the Life Cycle of Arabidopsis thaliana
Cited by: 143
Author(s): María Josefina Poupin, Tania Timmermann, Andrea Vega, Ana Zúñiga, Bernardo González
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpls.2018.01472

Exogenous Nicotinamide Adenine Dinucleotide Induces Resistance to Citrus Canker in Citrus
Cited by: 18
Author(s): Fernando Alférez, Kayla M. Gerberich, Jianliang Li, Yanping Zhang, James H. Graham, Zhonglin Mou
Software Mentions: 1
Published: over 5 years ago

10.1128/AEM.04077-15

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny
Cited by: 25
Author(s): Isha R. Patel, Jayanthi Gangiredla, David W. Lacher, Mark K. Mammel, Scott A. Jackson, Keith A. Lampel, Christopher A. Elkins
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2017.01084

Transcriptome-Wide Identification of Novel UV-B- and Light Modulated Flavonol Pathway Genes Controlled by VviMYBF1
Cited by: 35
Author(s): Stefan Czemmel, Janine Höll, Rodrigo Loyola, Patricio Arce‐Johnson, José Antonio Alcalde, José Tomás Matus, Jochen Bogs
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2015.00409

The knottin-like Blufensin family regulates genes involved in nuclear import and the secretory pathway in barley-powdery mildew interactions
Cited by: 12
Author(s): Weihui Xu, Yan Meng, Priyanka Surana, Greg Fuerst, Dan Nettleton, Roger P. Wise
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0039006

Effect of Graded Nrf2 Activation on Phase-I and -II Drug Metabolizing Enzymes and Transporters in Mouse Liver
Cited by: 113
Author(s): Kai Wu, Julia Yue Cui, Curtis D. Klaassen
Software Mentions: 1
Published: almost 12 years ago

10.3389/fpls.2014.00022

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments
Cited by: 96
Author(s): Javier Canales, Tomás C. Moyano, E. Saavedra Villarroel, Rodrigo A. Gutiérrez
Software Mentions: 1
Published: over 10 years ago

10.4155/fsoa-2017-0108

Key genes and regulatory networks involved in the initiation, progression and invasion of colorectal cancer
Cited by: 11
Author(s): Matin Asghari, Mohammad Foad Abazari, Hanieh Bokharaei, Maryam Nouri Aleagha, Vahdat Poortahmasebi, Hasan Askari, Sepehr Torabinejad, Abbas Ardalan, Navid Negaresh, Atousa Ataei, Parisa Pazooki, Mansour Poorebrahim
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0012609

Differences in Muscle and Adipose Tissue Gene Expression and Cardio-Metabolic Risk Factors in the Members of Physical Activity Discordant Twin Pairs
Cited by: 70
Author(s): Tuija Leskinen, Rita Rinnankoski‐Tuikka, Mirva Rintala, Tuulikki Seppänen‐Laakso, Eija Pöllänen, Markku Alén, Sarianna Sipilä, Jaakko Kaprio, Vuokko Kovanen, Paavo Rahkila, Matej Orešič, Heikki Kainulainen, Urho M. Kujala
Software Mentions: 1
Published: over 13 years ago

10.1155/2021/5340449

Hub Genes and Key Pathways of Intervertebral Disc Degeneration: Bioinformatics Analysis and Validation
Cited by: 5
Author(s): Zhi-wen Zhang, Qiong Wang, Yang Li, Bang-zhi Li, Liming Zheng, Chengjian He
Software Mentions: 1
Published: over 2 years ago

10.1371/journal.pone.0070626

Multiple Sclerosis: Modulation of Toll-Like Receptor (TLR) Expression by Interferon-β Includes Upregulation of TLR7 in Plasmacytoid Dendritic Cells
Cited by: 37
Author(s): Katja Derkow, Jakob Bauer, Michael Hecker, Brigitte Katrin Paap, Madhan Thamilarasan, Dirk Koczan, Eckart Schott, Katrin Deuschle, Judith Bellmann‐Strobl, Friedemann Paul, Uwe K. Zettl, Klemens Ruprecht, Seija Lehnardt
Software Mentions: 1
Published: almost 11 years ago

10.3390/cancers13040854

Prognostic Gene Expression, Stemness and Immune Microenvironment in Pediatric Tumors
Cited by: 8
Author(s): David Stahl, Rainer Knoll, Andrew J. Gentles, Christian Vokuhl, Andreas Buneß, Ines Gütgemann
Software Mentions: 1
Published: over 3 years ago

10.1242/bio.022467

tBRD-1 and tBRD-2 regulate expression of genes necessary for spermatid differentiation
Cited by: 6
Author(s): Ina Theofel, Marek Bartkuhn, Thomas Boettger, Stefanie Gärtner, Judith Kreher, Alexander Brehm, Christina Rathke
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.14899

TGFbeta and miRNA regulation in familial and sporadic breast cancer
Cited by: 17
Author(s): Katia Danza, Simona De Summa, Rosamaria Pinto, Brunella Pilato, Orazio Palumbo, Massimo Carella, Ondina Popescu, Maria Digennaro, Rosanna Lacalamita, Stefania Tommasi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0220577

Hyperglycemia acts in synergy with hypoxia to maintain the pro-inflammatory phenotype of macrophages
Cited by: 50
Author(s): Mangesh Morey, Peadar Ó’Gaora, Abhay Pandit, Christophe Hélary
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0001504

Human and Chimpanzee Gene Expression Differences Replicated in Mice Fed Different Diets
Cited by: 44
Author(s): Mehmet Somel, Hilliary Creely, Henriette Franz, U. Muêller, Michael Lachmann, Philipp Khaitovich, Svante Pääbo
Software Mentions: 1
Published: over 16 years ago

10.1186/s12263-016-0550-2

Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny
Cited by: 16
Author(s): Tamio Furuse, Kunio Miyake, Takashi Kohda, Hideki Kaneda, Takae Hirasawa, Ikuko Yamada, Tomoko Kushida, Masami Kashimura, Kimio Kobayashi, Fumitoshi Ishino, Takeo Kubota, Shigeharu Wakana
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-7-276

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
Cited by: 164
Author(s): Michał Okoniewski, Crispin Miller
Software Mentions: 1
Published: almost 18 years ago

10.1186/1297-9686-43-24

Comparative expression profiling of E. coli and S. aureus inoculated primary mammary gland cells sampled from cows with different genetic predispositions for somatic cell score
Cited by: 52
Author(s): Bodo Brand, Anja Hartmann, Dirk Repsilber, B. Griesbeck-Zilch, Olga Wellnitz, Christa Kühn, Siriluck Ponsuksili, Heinrich Meyer, Manfred Schwerin
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0077065

Clinical, Molecular and Genetic Validation of a Murine Orthotopic Xenograft Model of Pancreatic Adenocarcinoma Using Fresh Human Specimens
Cited by: 62
Author(s): Dustin M. Walters, Joseph Stokes, Sara J. Adair, Edward B. Stelow, Cheryl A. Borgman, Bryce Lowrey, Wenjun Xin, Edik M. Blais, Jae K. Lee, Jason A. Papin, John T. Parsons, Todd W. Bauer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0057219

A Triad of Highly Divergent Polymeric Immunoglobulin Receptor (PIGR) Haplotypes with Major Effect on IgA Concentration in Bovine Milk
Cited by: 7
Author(s): Sarah D. Berry, Wouter Coppieters, Stephen R. Davis, Alayna Burrett, Natalie Thomas, David J. Palmer, Van Kelly, Victor Obolonkin, K. Sanders, Richard Spelman, Michel Georges, Klaus Lehnert, Russell G. Snell
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.7390

Integrative analysis of genome-wide association studies and gene expression analysis identifies pathways associated with rheumatoid arthritis
Cited by: 8
Author(s): Mingming Zhang, Hongbo Mu, Hongchao Lv, Lian Duan, Zhenwei Shang, Jin Li, Yongshuai Jiang, Ruijie Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0024176

Characterisation of Genome-Wide PLZF/RARA Target Genes
Cited by: 22
Author(s): Salvatore Spicuglia, Christelle Vincent-Fabert, Touati Benoukraf, Guillaume Tibéri, Andrew J. Saurin, Joaquin Zacarías-Cabeza, David Grimwade, Ken I. Mills, Boris Calmels, François Bertucci, Michael H. Sieweke, Pierre Ferrier, Estelle Duprez
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0070493

Epigenetics and Sex-Specific Fitness: An Experimental Test Using Male-Limited Evolution in Drosophila melanogaster
Cited by: 12
Author(s): Jessica K. Abbott, Paolo Innocenti, Adam K. Chippindale, Edward H. Morrow
Software Mentions: 1
Published: almost 11 years ago

Projects: bioconductor: affy

Papers Mentioning affy 989