Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: Trendy

https://packages.ecosyste.ms/registries/bioconductor.org/packages/Trendy

Breakpoint analysis of time-course expression data
2 versions
Latest release: about 1 year ago
7,126 downloads total

Papers Mentioning Trendy 8

10.3390/genes12030352

Temporal Dynamic Methods for Bulk RNA-Seq Time Series Data
Cited by: 10
Author(s): Vera-Khlara S. Oh, Robert W. Li
Software Mentions: 12
Published: over 3 years ago

Integration of segmented regression analysis with weighted gene correlation network analysis identifies genes whose expression is remodeled throughout physiological aging in mouse tissues
Cited by: 8
Author(s): Margarida Ferreira, Stephany Francisco, Ana Raquel Soares, Ana Nobre, Miguel Pinheiro, Andreia Reis, Sonya Neto, Ana João Rodrigues, Nuno Sousa, Gabriela Moura, Manuel A. S. Santos
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pcbi.1008778

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells
Cited by: 4
Author(s): Jared Brown, Christopher Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Michael P. Schwartz, Amy Van Aartsen, John Steill, Scott Swanson, Ron Stewart, James A. Thomson, Christina Kendziorski
Software Mentions: 9
Published: over 3 years ago

10.1186/s12859-019-3324-1

Lag penalized weighted correlation for time series clustering
Cited by: 8
Author(s): Thevaa Chandereng, Anthony Gitter
Software Mentions: 5
Published: over 4 years ago

10.18632/aging.104089

Identification and characterization of dynamically regulated hepatitis-related genes in a concanavalin A-induced liver injury model
Cited by: 1
Author(s): Anna Chen, Yidong Wang, Jiaqi Wu, Dongfang Tang, Qianru Zhu, Anqian Lu, Jin Yang, Zhejun Cai, Junping Shi
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pcbi.1007543

Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics
Cited by: 6
Author(s): Christopher Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Mitchell D. Probasco, Ning Leng, Bret Duffin, John Steill, Scott Swanson, Brian E. McIntosh, Ron Stewart, Christina Kendziorski, James A. Thomson, Rhonda Bacher
Software Mentions: 3
Published: almost 5 years ago

10.1029/2018GB005922

Have Synergies Between Nitrogen Deposition and Atmospheric CO<sub>2</sub> Driven the Recent Enhancement of the Terrestrial Carbon Sink?
Cited by: 20
Author(s): Michael O’Sullivan, Dominick V. Spracklen, Sarah A. Batterman, S. R. Arnold, M. Gloor, Wolfgang Buermann
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-018-2405-x

Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments
Cited by: 23
Author(s): Rhonda Bacher, Ning Leng, Li‐Fang Chu, Zijian Ni, James A. Thomson, Christina Kendziorski, Ron Stewart
Software Mentions: 1
Published: about 6 years ago