Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: PAST
https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST
Pathway Association Study Tool (PAST)
1 version
Latest release: 7 months ago
4,613 downloads total
Papers Mentioning PAST 2,336
10.3390/genes10010042
Stress-Tolerant Yeasts: Opportunistic Pathogenicity Versus Biocontrol PotentialCited by: 52
Author(s): Janja Zajc, Cene Gostinčar, Anja Černoša, Nina Gunde‐Cimerman
Software Mentions: 3
Published: over 5 years ago
10.1111/tpj.12600
The low‐recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expressionCited by: 31
Author(s): Katie Baker, Micha Bayer, Nicola Cook, Steven Dreißig, Taniya Dhillon, Joanne Russell, Pete E. Hedley, Jenny Morris, Luke Ramsay, Isabelle Colas, Robbie Waugh, Brian J. Steffenson, Iain Milne, Gordon Stephen, David Marshall, Andrew J. Flavell
Software Mentions: 3
Published: almost 10 years ago
10.7717/peerj-cs.249
Landmark-based homologous multi-point warping approach to 3D facial recognition using multiple datasetsCited by: 4
Author(s): Olalekan Agbolade, Azree Nazri, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: over 4 years ago
10.3389/fphar.2021.623070
Insular Pharmacopoeias: Ethnobotanical Characteristics of Medicinal Plants Used on the Adriatic IslandsCited by: 14
Author(s): Łukasz Łuczaj, Marija Jug-Dujaković, Katija Dolina, Mirjana Jeričević, Ivana Vitasović‐Kosić
Software Mentions: 3
Published: about 3 years ago
10.3390/plants10010104
CRISPR/Cas9-Mediated Knockout of HOS1 Reveals Its Role in the Regulation of Secondary Metabolism in Arabidopsis thalianaCited by: 14
Author(s): Yuri N. Shkryl, Yulia A. Yugay, Т.В. Авраменко, Valeria P. Grigorchuk, Tatiana Y. Gorpenchenko, Olga Grischenko, Victor P. Bulgakov
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2021.634960
Life on the Rocks: First Insights Into the Microbiota of the Threatened Aquatic Rheophyte Hanseniella heterophyllaCited by: 3
Author(s): Witoon Purahong, Shakhawat Hossen, Ali Nawaz, Dolaya Sadubsarn, Benjawan Tanunchai, Sven Dommert, Matthias Noll, La‐aw Ampornpan, Petcharat Werukamkul, Tesfaye Wubet
Software Mentions: 3
Published: almost 3 years ago
10.3389/fmicb.2018.00364
Substrate Shift Reveals Roles for Members of Bacterial Consortia in Degradation of Plant Cell Wall PolymersCited by: 27
Author(s): Camila Carlos, Huan Fan, Cameron R. Currie
Software Mentions: 3
Published: about 6 years ago
10.7717/peerj.3511
The identification of Oligo-Miocene mammalian palaeocommunities from the Riversleigh World Heritage Area, Australia and an appraisal of palaeoecological techniquesCited by: 8
Author(s): Troy Myers, Karen H. Black, Michael Archer, Suzanne J. Hand
Software Mentions: 3
Published: almost 7 years ago
10.3389/fmicb.2020.571400
Exploring the Influence of Signal Molecules on Marine Biofilms DevelopmentCited by: 14
Author(s): Ruojun Wang, Wei Ding, Lexin Long, Yi Lan, Haoya Tong, Subhasish Saha, Yue Him Wong, Jin Sun, Yong-Xin Li, Weipeng Zhang, Pei‐Yuan Qian
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2019.01666
Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot DiseaseCited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: almost 5 years ago
10.7717/peerj.8571
Gynodioecy in the common spindle tree (<i>Euonymus europaeus</i>L.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowersCited by: 3
Author(s): Jiří Neustupa
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-020-3497-7
A novel investigation of the effect of iterations in sliding semi-landmarks for 3D human facial imagesCited by: 1
Author(s): Azree Nazri, Olalekan Agbolade, Razali Yaakob, Abdul Ghani, Yoke Kqueen Cheah
Software Mentions: 3
Published: almost 4 years ago
10.3389/fmicb.2019.00726
Negligible Impact of Perinatal Tulathromycin Metaphylaxis on the Developmental Dynamics of Fecal Microbiota and Their Accompanying Antimicrobial Resistome in PigletsCited by: 12
Author(s): Mohamed Zeineldin, Ameer Megahed, Benjamin Blair, Brandi Burton, Brian Aldridge, James Lowe
Software Mentions: 3
Published: about 5 years ago
10.3390/genes12040545
A Complex Gene Network Mediated by Ethylene Signal Transduction TFs Defines the Flower Induction and Differentiation in Olea europaea L.Cited by: 2
Author(s): Amelia Salimonti, Ivano Forgione, Tiziana Maria Sirangelo, Guglielmo Puccio, Antonio Mauceri, Francesco Mercati, Francesco Sunseri, Fabrizio Carbone
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-019-52395-z
Environmental and ecological factors mediate taxonomic composition and body size of polyplacophoran assemblages along the Peruvian ProvinceCited by: 6
Author(s): Christian M. Ibáñez, Melany Waldisperg, Felipe I. Torres, Sergio A. Carrasco, Javier Sellanes, M. Cecilia Pardo‐Gandarillas, Julia D. Sigwart
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2018.00076
Fungal Genetics and Functional Diversity of Microbial Communities in the Soil under Long-Term Monoculture of Maize Using Different Cultivation TechniquesCited by: 29
Author(s): Anna Gałązka, Jarosław Grządziel
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2020.00285
The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity GradientCited by: 27
Author(s): Dayu Zou, Jie Pan, Zongbao Liu, Chuanlun Zhang, Hongbin Liu, Meng Li
Software Mentions: 3
Published: about 4 years ago
10.3389/fmicb.2017.00715
Relative Abundance and Diversity of Bacterial Methanotrophs at the Oxic–Anoxic Interface of the Congo Deep-Sea FanCited by: 11
Author(s): Sandrine Bessette, Yann Moalic, Sébastien Gautey, Françoise Lesongeur, Anne Godfroy, Laurent Toffin
Software Mentions: 3
Published: about 7 years ago
10.3389/fmicb.2018.01664
Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as AmendmentCited by: 26
Author(s): Bruna Matturro, Lucia Pierro, Emanuela Frascadore, Marco Petrangeli Papini, Simona Rossetti
Software Mentions: 3
Published: almost 6 years ago
10.1186/s12859-014-0361-7
Tools for T-RFLP data analysis using ExcelCited by: 15
Author(s): Nils Johan Fredriksson, Malte Hermansson, Britt‐Marie Wilén
Software Mentions: 3
Published: over 9 years ago
10.7717/peerj.7970
Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from TanzaniaCited by: 7
Author(s): Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2018.00002
Transcriptome Analysis of a Bloom-Forming Cyanobacterium Microcystis aeruginosa during Ma-LMM01 Phage InfectionCited by: 25
Author(s): Daichi Morimoto, Shigeko Kimura, Yoshihiko Sako, Takashi Yoshida
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj.1589
Cranial ontogenetic variation in early saurischians and the role of heterochrony in the diversification of predatory dinosaursCited by: 40
Author(s): Christian Foth, Brandon P Hedrick, Martín D. Ezcurra
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2019.00594
High-Throughput Illumina MiSeq Amplicon Sequencing of Yeast Communities Associated With Indigenous Dairy Products From Republics of Benin and NigerCited by: 14
Author(s): Philippe Sessou, Santosh Keisam, Ngangyola Tuikhar, Mariama Gagara, Souaïbou Farougou, Kumaraswamy Jeyaram
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2016.00837
Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated SoilCited by: 22
Author(s): Mary-Cathrine Leewis, Ondřej Uhlík, Serena Fraraccio, Kelly M. McFarlin, Anastasia Kottara, Catherine Glover, Tomáš Macek, Mary Beth Leigh
Software Mentions: 3
Published: almost 8 years ago
10.1007/s00027-019-0643-2
Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradientCited by: 14
Author(s): Anna Waibel, Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: about 5 years ago
10.7717/peerj.5974
Genetic and phenotypic differentiation of lumpfish (<i>Cyclopterus lumpus</i>) across the North Atlantic: implications for conservation and aquacultureCited by: 23
Author(s): Benjamin Alexander Whittaker, Sofía Consuegra, Carlos García de Leániz
Software Mentions: 3
Published: over 5 years ago
10.7717/peerj.1702
Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic miceCited by: 34
Author(s): José F. García-Mazcorro, Ivan Ivanov, David A. Mills, Giuliana Noratto
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2019.00908
Bacterioplankton Community Composition Along Environmental Gradients in Lakes From Byers Peninsula (Maritime Antarctica) as Determined by Next-Generation SequencingCited by: 25
Author(s): Antonio Picazo, Carlos Rochera, Juan Antonio Villaescusa, Javier Miralles‐Lorenzo, David Velázquez, Antonio Quesada, Antonio Camacho
Software Mentions: 3
Published: about 5 years ago
10.7717/peerj.4174
Is there a link between aging and microbiome diversity in exceptional mammalian longevity?Cited by: 26
Author(s): Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Software Mentions: 3
Published: over 6 years ago
10.1186/1471-2180-12-122
Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial systemCited by: 82
Author(s): Vicente Gomez-Alvarez, Randy P. Revetta, Jorge W. Santo Domingo
Software Mentions: 3
Published: almost 12 years ago
10.3389/fmicb.2016.00462
Carrageenan Gum and Adherent Invasive Escherichia coli in a Piglet Model of Inflammatory Bowel Disease: Impact on Intestinal Mucosa-associated MicrobiotaCited by: 41
Author(s): Peris M. Munyaka, Shadi Sepehri, Jean–Eric Ghia, Ehsan Khafipour
Software Mentions: 3
Published: about 8 years ago
10.3389/fmicb.2019.02907
A New High Throughput Sequencing Assay for Characterizing the Diversity of Natural Vibrio Communities and Its Application to a Pacific Oyster Mortality EventCited by: 22
Author(s): William L. King, Nachshon Siboni, Tim Kahlke, Timothy Green, Maurizio Labbate, Justin R. Seymour
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2018.01251
Gut Bacterial Communities of Dendroctonus valens and Monoterpenes and Carbohydrates of Pinus tabuliformis at Different Attack Densities to Host PinesCited by: 7
Author(s): Dandan Xu, Letian Xu, Fangyuan Zhou, Bo Wang, Shanshan Wang, Min Lü, Jianghua Sun
Software Mentions: 3
Published: almost 6 years ago
10.1186/1756-3305-6-228
The compositional landscape of minicircle sequences isolated from active lesions and scars of American cutaneous leishmaniasisCited by: 5
Author(s): Eduardo Henrique Gomes Rodrigues, Fábia Carla da Silva Soares, Roberto P. Werkhäuser, Maria Edileuza Felinto de Brito, Octávio Fernandes, Frederico G. C. Abath, Adeílton Brandão
Software Mentions: 3
Published: almost 11 years ago
10.3389/fmicb.2019.02271
Distinct Successions of Common and Rare Bacteria in Soil Under Humic Acid Amendment – A Microcosm StudyCited by: 30
Author(s): Pengfa Li, Jia Liu, Chunyu Jiang, Meng Wu, Ming Liu, Zhongpei Li
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2013.00253
Plant soil interactions alter carbon cycling in an upland grassland soilCited by: 22
Author(s): Bruce C. Thomson, Nicholas J. Ostle, Niall P. McNamara, Simon Oakley, Andrew S. Whiteley, Mark Bailey, Robert I. Griffiths
Software Mentions: 3
Published: over 11 years ago
10.3389/fmicb.2015.01297
Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic SeaCited by: 132
Author(s): Angelika Rieck, Daniel P. R. Herlemann, Klaus Jürgens, Hans‐Peter Grossart
Software Mentions: 3
Published: over 8 years ago
10.1038/srep35507
Historical dimensions of population structure in a continuously distributed marine species: The case of the endemic Chilean dolphinCited by: 8
Author(s): María José Pérez‐Álvarez, Carlos Olavarría, Rodrigo Moraga, C. Scott Baker, Rebecca M. Hamner, Élie Poulin
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2018.00578
Benthic Algal Community Structures and Their Response to Geographic Distance and Environmental Variables in the Qinghai-Tibetan Lakes With Different SalinityCited by: 23
Author(s): Jian Yang, Hongchen Jiang, Wen Liu, Beichen Wang
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2016.00440
Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species SpecificCited by: 113
Author(s): Catarina Cúcio, Aschwin H. Engelen, Rodrigo Costa, Gerard Muyzer
Software Mentions: 3
Published: about 8 years ago
10.3389/fmicb.2016.00426
The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosisCited by: 42
Author(s): Hooman Derakhshani, Jeroen De Buck, Rienske A.R. Mortier, Herman W. Barkema, Denis O. Krause, Ehsan Khafipour
Software Mentions: 3
Published: about 8 years ago
10.3389/fmicb.2015.01300
Forest Management Type Influences Diversity and Community Composition of Soil Fungi across Temperate Forest EcosystemsCited by: 117
Author(s): Kezia Goldmann, Ingo Schöning, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2017.02511
Succession of Bacterial Communities in a Seasonally Stratified Lake with an Anoxic and Sulfidic HypolimnionCited by: 42
Author(s): Muhe Diao, Ruben Sinnige, Karsten Kalbitz, Jef Huisman, Gerard Muyzer
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2021.629169
Targeting the Active Rhizosphere Microbiome of Trifolium pratense in Grassland Evidences a Stronger-Than-Expected Belowground Biodiversity-Ecosystem Functioning LinkCited by: 15
Author(s): Sara Fareed Mohamed Wahdan, Anna Heintz‐Buschart, Chakriya Sansupa, Benjawan Tanunchai, Yuting Wu, Martin Schädler, Matthias Noll, Witoon Purahong, François Buscot
Software Mentions: 3
Published: over 3 years ago
10.1186/s42523-021-00077-5
Ceftiofur reduced Fusobacterium leading to uterine microbiota alteration in dairy cows with metritisCited by: 9
Author(s): Seong-Jeub Jeon, Federico Cunha, R. Daetz, R.C. Bicalho, Svetlana Lima, Klibs N. Galvão
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-018-29307-8
Mineralogical and textural characteristics of nest building geomaterials used by three sympatric mud-nesting hirundine speciesCited by: 9
Author(s): Dimitrios Papoulis, Olga Tzortzakaki, Pavlos Avramidis, Panagiotis Mentis, Paraskevi Lampropoulou, George Iliopoulos
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2018.02120
Determinants of Deadwood-Inhabiting Fungal Communities in Temperate Forests: Molecular Evidence From a Large Scale Deadwood Decomposition ExperimentCited by: 39
Author(s): Witoon Purahong, Tesfaye Wubet, Guillaume Lentendu, Björn Hoppe, Katalee Jariyavidyanont, Tobias Arnstadt, Kristin Baber, Peter Otto, Harald Kellner, Martin Hofrichter, Jürgen Bauhus, Wolfgang W. Weisser, Dirk Krüger, Ernst Detlef Schulze, Tiemo Kahl, François Buscot
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2017.02319
Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input StreamsCited by: 50
Author(s): Ze Ren, Fang Wang, Xiaodong Qu, James J. Elser, Yang Liu, Limin Chu
Software Mentions: 3
Published: over 6 years ago
10.1002/ece3.5024
Availability of food resources and habitat structure shape the individual‐resource network of a Neotropical marsupialCited by: 15
Author(s): Nícholas F. de Camargo, Hernani Oliveira, Juliana Fernandes Ribeiro, A. J. A. de Camargo, Emerson M. Vieira
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-019-38993-x
Regime shift in fish assemblage structure in the Yangtze River following construction of the Three Gorges DamCited by: 24
Author(s): Xin Gao, Masami Fujiwara, Kirk O. Winemiller, Pengcheng Lin, Mingzheng Li, Huanzhang Liu
Software Mentions: 3
Published: about 5 years ago
10.1128/AEM.02885-19
Nutrient Level Determines Biofilm Characteristics and Subsequent Impact on Microbial Corrosion and Biocide EffectivenessCited by: 48
Author(s): Silvia J. Salgar-Chaparro, Kateřina Lepková, Thunyaluk Pojtanabuntoeng, Adam Darwin, Laura L. Machuca
Software Mentions: 3
Published: about 4 years ago
10.1002/ece3.1555
Size matters: nest colonization patterns for twig‐nesting antsCited by: 31
Author(s): Estelí Jiménez‐Soto, Stacy M. Philpott
Software Mentions: 3
Published: almost 9 years ago
10.1186/s12864-017-3606-9
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguityCited by: 268
Author(s): Ignazio Verde, Jerry Jenkins, Luca Dondini, Simona Micali, Giulia Pagliarani, Elisa Vendramin, Roberta Paris, Valeria Aramini, Laura Gazza, Laura Rossini, D. Bassi, Michela Troggio, Shengqiang Shu, Jane Grimwood, Stefano Tartarini, Maria Teresa Dettori, Jeremy Schmutz
Software Mentions: 3
Published: about 7 years ago
10.1002/ece3.4859
Physical, but not chemical, antiherbivore defense expression is related to the clustered spatial distribution of tropical trees in an Amazonian forestCited by: 7
Author(s): Johanna Cobo-Quinche, María‐José Endara, Renato Valencia, Dolly Muñoz-Upegui, Rafael E. Cárdenas
Software Mentions: 3
Published: over 5 years ago
10.3390/microorganisms9010075
On-Site Blackwater Treatment Fosters Microbial Groups and Functions to Efficiently and Robustly Recover Carbon and NutrientsCited by: 3
Author(s): Eiko E. Kuramae, Maurício R. Dimitrov, Gustavo H. R. da Silva, Adriano Reis Lucheta, Lucas William Mendes, Ronildson Lima Luz, Louise E. M. Vet, Tânia V. Fernandes
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4105
Strong associations between plant genotypes and bacterial communities in a natural salt marshCited by: 24
Author(s): Gregory P. Zogg, Steven E. Travis, Daniel A. Brazeau
Software Mentions: 3
Published: about 6 years ago
10.1007/s00248-016-0775-z
Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral MicrocosmsCited by: 50
Author(s): Jessica E. Koopman, Mark J. Buijs, Bernd W. Brandt, Bart J. F. Keijser, Wim Crielaard, Egija Zaura
Software Mentions: 3
Published: about 8 years ago
10.1128/AEM.02189-20
Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification ConditionsCited by: 8
Author(s): Amanda Shore, Rusty D. Day, Joseph Stewart, Colleen A. Burge
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0248806
Soil bacterial communities and their associated functions for forest restoration on a limestone mine in northern ThailandCited by: 11
Author(s): Chakriya Sansupa, Witoon Purahong, Tesfaye Wubet, Pimonrat Tiansawat, Wasu Pathom-aree, Neung Teaumroong, Panuwan Chantawannakul, François Buscot, Stephen Elliott, Terd Disayathanoowat
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0218257
Microbiota data from low biomass milk samples is markedly affected by laboratory and reagent contaminationCited by: 35
Author(s): Josef Dahlberg, Li Sun, Karin Persson Waller, K. Östensson, Mark A. McGuire, Sigrid Agenäs, Johan Dicksved
Software Mentions: 3
Published: almost 5 years ago
10.1007/s00248-016-0748-2
Abundance and Diversity of Bacterial, Archaeal, and Fungal Communities Along an Altitudinal Gradient in Alpine Forest Soils: What Are the Driving Factors?Cited by: 254
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 3
Published: about 8 years ago
10.1007/s00248-020-01565-y
Canopy Position Has a Stronger Effect than Tree Species Identity on Phyllosphere Bacterial Diversity in a Floodplain Hardwood ForestCited by: 12
Author(s): Martina Herrmann, Patricia Geesink, Ronny Richter, Kirsten Küsel
Software Mentions: 3
Published: almost 4 years ago
10.1007/s00248-020-01543-4
Unveiling the Microbiota Diversity of the Xerophyte Argania spinosa L. Skeels Root System and ResiduesphereCited by: 6
Author(s): Francesca Mapelli, Valentina Riva, Lorenzo Vergani, Redouane Choukr‐Allah, Sara Borin
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-67631-0
Soil as an extended composite phenotype of the microbial metagenomeCited by: 37
Author(s): Andrew L. Neal, Aurélie Bacq-Labreuil, Xiaoxian Zhang, Ian M. Clark, Kevin Coleman, Sacha J. Mooney, Karl Ritz, John W. Crawford
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.5656
To remain or leave: Dispersal variation and its genetic consequences in benthic freshwater invertebratesCited by: 2
Author(s): Paolo Ruggeri, Ellen Pasternak, Beth Okamura
Software Mentions: 3
Published: over 4 years ago
10.1002/ece3.1950
Molecular and iridescent feather reflectance data reveal recent genetic diversification and phenotypic differentiation in a cloud forest hummingbirdCited by: 19
Author(s): Juan Francisco Ornelas, Clementina González, Blanca E. Hernández‐Baños, Jaime García‐Moreno
Software Mentions: 3
Published: over 8 years ago
10.1002/ece3.908
Expanding the understanding of local community assembly in adaptive radiationsCited by: 5
Author(s): Katharina C. Wollenberg, Michael Veith, Stefan Lötters
Software Mentions: 3
Published: over 10 years ago
10.1002/ece3.646
Environmental effects on molecular and phenotypic variation in populations of<i>Eruca sativa</i>across a steep climatic gradientCited by: 31
Author(s): Erik Westberg, Shachar Ohali, Anatoly Shevelevich, Pinchas Fine, Oz Barazani
Software Mentions: 3
Published: almost 11 years ago
10.1002/ece3.5713
Rapid redistribution of agricultural land alters avian richness, abundance, and functional diversityCited by: 6
Author(s): Stephen Pringle, Ngoni Chiweshe, Peter Steward, Peter J. Mundy, Martin Dallimer
Software Mentions: 3
Published: over 4 years ago
10.3390/microorganisms9081704
The Sisal Virome: Uncovering the Viral Diversity of Agave Varieties Reveals New and Organ-Specific VirusesCited by: 3
Author(s): Gabriel Quintanilha-Peixoto, Paula Luize Camargos Fonseca, Fábio Trigo Raya, Marina Püpke Marone, Dener Eduardo Bortolini, Piotr A. Mieczkowski, Roenick Proveti Olmo, Marcelo Falsarella Carazzolle, Christian A. Voigt, Ana Cristina Fermino Soares, Gonçalo Amarante Guimarães Pereira, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar
Software Mentions: 3
Published: almost 3 years ago
10.3390/microorganisms9051024
Isoprene-Degrading Bacteria from Soils Associated with Tropical Economic Crops and Framework Forest TreesCited by: 2
Author(s): Toungporn Uttarotai, Boyd A. McKew, Farid Benyahia, J. Colin Murrell, Wuttichai Mhuantong, Sunanta Wangkarn, Thararat Chitov, Sakunnee Bovonsombut, Terry J. McGenity
Software Mentions: 3
Published: about 3 years ago
10.3390/molecules26061546
A Novel Validated Injectable Colistimethate Sodium Analysis Combining Advanced Chemometrics and Design of ExperimentsCited by: 3
Author(s): Ioanna Dagla, Anthony Tsarbopoulos, Evagelos Gikas
Software Mentions: 3
Published: about 3 years ago
10.1002/ece3.8075
High genetic and epigenetic variation of transposable elements: Potential drivers to rapid adaptive evolution for the noxious invasive weed <i>Mikania micrantha</i>Cited by: 5
Author(s): Yingjuan Su, Qiqi Huang, Zhen Wang, Ting Wang
Software Mentions: 3
Published: over 2 years ago
10.1371/journal.pone.0017000
Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland SoilsCited by: 440
Author(s): Heiko Nacke, Andrea Thürmer, Antje Wollherr, Christiane Will, Ladislav Hodač, Nadine Herold, Ingo Schöning, Marion Schrumpf, Rolf Daniel
Software Mentions: 3
Published: over 13 years ago
10.1002/ece3.4678
Coral epigenetic responses to nutrient stress: Histone H2A.X phosphorylation dynamics and DNA methylation in the staghorn coral <i>Acropora cervicornis</i>Cited by: 35
Author(s): Javier Rodríguez-Casariego, Mark C. Ladd, Andrew A. Shantz, Christian Lopes, Manjinder S. Cheema, Bohyun Kim, Steven B. Roberts, James W. Fourqurean, Juan Ausió, Deron E. Burkepile, José M. Eirín‐López
Software Mentions: 3
Published: over 5 years ago
10.3390/ijms21134634
New Insight into the Composition of Wheat Seed MicrobiotaCited by: 33
Author(s): Agnieszka Kuźniar, Kinga Włodarczyk, Jarosław Grządziel, Małgorzata Woźniak, Karolina Furtak, Anna Gałązka, Ewa Dziadczyk, Ewa Skórzyńska-Polit, Agnieszka Woliñska
Software Mentions: 3
Published: almost 4 years ago
10.3390/cells9122700
Differentially Expressed Genes Shared by Two Distinct Cytoplasmic Male Sterility (CMS) Types of Silene vulgaris Suggest the Importance of Oxidative Stress in Pollen AbortionCited by: 6
Author(s): Manuela Krüger, Oushadee A. J. Abeyawardana, Claudia Krüger, Miloslav Juříček, Helena Štorchová
Software Mentions: 3
Published: over 3 years ago
10.3390/microorganisms8111708
Bacterial Communities in the Rhizosphere and Phyllosphere of Halophytes and Drought-Tolerant Plants in Mediterranean EcosystemsCited by: 11
Author(s): Savvas Genitsaris, Natassa Stefanidou, Kleopatra Leontidou, Theodora Matsi, Katerina Karamanoli, Ιfigeneia Mellidou
Software Mentions: 3
Published: over 3 years ago
10.3390/cells8060623
Functionally Significant Features in the 5′ Untranslated Region of the ABCA1 Gene and Their Comparison in VertebratesCited by: 10
Author(s): Pavel Dvořák, Sarah Leupen, Pavel Souček
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pone.0105515
Soil Bacterial Community Response to Differences in Agricultural Management along with Seasonal Changes in a Mediterranean RegionCited by: 85
Author(s): Annamaria Bevivino, Patrizia Paganin, Giovanni Bacci, Alessandro Florio, Maite Sampedro Pellicer, Maria Cristiana Papaleo, Alessio Mengoni, Luigi Ledda, Renato Fani, Antonio Benedetti, Claudia Dalmastri
Software Mentions: 3
Published: over 9 years ago
10.1186/s12862-017-1038-4
Historical biogeography and ecological niche modelling of the Asimina-Disepalum clade (Annonaceae): role of ecological differentiation in Neotropical-Asian disjunctions and diversification in AsiaCited by: 13
Author(s): Pui-Sze Li, Daniel C. Thomas, Richard M. Saunders
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12862-015-0425-y
Cytotype diversity and genome size variation in Knautia (Caprifoliaceae, Dipsacoideae)Cited by: 29
Author(s): Božo Frajman, Ivana Rešetnik, Hanna Weiss‐Schneeweiss, Friedrich Ehrendorfer
Software Mentions: 3
Published: almost 9 years ago
10.1007/s00248-016-0904-8
Microbiology Meets Archaeology: Soil Microbial Communities Reveal Different Human Activities at Archaic Monte Iato (Sixth Century BC)Cited by: 28
Author(s): Rosa Margesin, J.A. Siles, Tomáš Cajthaml, Birgit Öhlinger, Erich Kistler
Software Mentions: 3
Published: over 7 years ago
10.1186/s13068-017-0989-4
The effect of temperature and retention time on methane production and microbial community composition in staged anaerobic digesters fed with food wasteCited by: 70
Author(s): John Christian Gaby, Mirzaman Zamanzadeh, Svein Jarle Horn
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0108924
Fecal Bacterial Community Changes Associated with Isoflavone Metabolites in Postmenopausal Women after Soy Bar ConsumptionCited by: 82
Author(s): Cindy H. Nakatsu, Arthur Armstrong, Andrea Clavijo, Berdine R. Martin, Stephen Barnes, Connie M. Weaver
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0173029
Exploring gastric bacterial community in young pigsCited by: 8
Author(s): Vincenzo Motta, Paolo Trevisi, Francesca Bertolini, Anisa Ribani, Giuseppina Schiavo, Luca Fontanesi, Paolo Bosi
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0228976
Seasonal and social factors associated with spacing in a wild territorial electric fishCited by: 7
Author(s): Lucía Zubizarreta, Laura Quintana, Daniel Hernández, Franco Teixeira de Mello, Mariana Meerhoff, Renato Massaaki Honji, Renata Guimarães Moreira, Ana C. Silva
Software Mentions: 3
Published: almost 4 years ago
10.1186/s40168-018-0597-y
Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant hostCited by: 95
Author(s): Ramona Marasco, María J. Mosqueira, Marco Fusi, Jean‐Baptiste Ramond, Giuseppe Merlino, Jenny Marie Booth, Gillian Maggs‐Kölling, Don A. Cowan, Daniele Daffonchio
Software Mentions: 3
Published: over 5 years ago
10.1186/s40168-017-0284-4
Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 miceCited by: 28
Author(s): Phillip T. Brooks, Kelsey A. Brakel, Julia A. Bell, Christopher E. Bejcek, Trey E. Gilpin, Jean M. Brudvig, Linda S. Mansfield
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0034339
Radiating on Oceanic Islands: Patterns and Processes of Speciation in the Land Snail Genus Theba (Risso 1826)Cited by: 23
Author(s): Carola Greve, Rainer Hutterer, Bernhard Misof, Martín Haase
Software Mentions: 3
Published: about 12 years ago
10.1371/journal.pone.0124146
The Role of Temporal Abundance Structure and Habitat Preferences in the Survival of Conodonts during the Mid-Early Silurian Ireviken Mass Extinction EventCited by: 13
Author(s): Andrej Spiridonov, Antanas Brazauskas, Sigitas Radzevičius
Software Mentions: 3
Published: about 9 years ago
10.1186/s40168-019-0753-z
The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot studyCited by: 20
Author(s): Josef Wagner, Ewan M. Harrison, Marcos Martinez Del Pero, Beth Blane, Gert Mayer, Johannes Leierer, Seerapani Gopaluni, Mark A. Holmes, Julian Parkhill, Sharon J. Peacock, David Jayne, Andreas Kronbichler
Software Mentions: 3
Published: over 4 years ago
10.1186/s40168-021-01041-w
Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sitesCited by: 29
Author(s): Denise P. Silva, Helena Villela, Henrique F. Santos, Gabriela Duarte, José Roberto de Assis Ribeiro, Angela Michelato Ghizelini, Caren L. S. Vilela, Phillipe M. Rosado, Carolline S. Fazolato, Erika P. Santoro, Flávia Lima do Carmo, Dalton S. Ximenes, Adriana U. Soriano, Caio T. C. C. Rachid, Rebecca L. Vega Thurber, Raquel S. Peixoto
Software Mentions: 3
Published: almost 3 years ago
10.1186/s12862-018-1308-9
Seed size evolution and biogeography of Plukenetia (Euphorbiaceae), a pantropical genus with traditionally cultivated oilseed speciesCited by: 16
Author(s): Warren M. Cardinal‐McTeague, Kenneth J. Wurdack, Erin M. Sigel, Lynn J. Gillespie
Software Mentions: 3
Published: over 5 years ago
10.3390/life10020013
Endolithic Fungal Species Markers for Harshest Conditions in the McMurdo Dry Valleys, AntarcticaCited by: 12
Author(s): Claudia Coleine, Nuttapon Pombubpa, Laura Zucconi, Silvano Onofri, Jason E. Stajich, Laura Selbmann
Software Mentions: 3
Published: over 4 years ago
10.1128/MRA.00757-19
The Bacterial Community in the Western Region of North Pacific Intermediate WaterCited by: 0
Author(s): Maki Teramoto, Ayumi Komatsu, Kouhei Ohnishi
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0250452
eDNA as a tool for non-invasive monitoring of the fauna of a turbid, well-mixed system, the Elbe estuary in GermanyCited by: 12
Author(s): Martin Schwentner, Reza Zahiri, Satoshi Yamamoto, Martin Husemann, Björn Kullmann, Ralf Thiel
Software Mentions: 3
Published: about 3 years ago
10.1002/mbo3.856
Potential links between wood‐inhabiting and soil fungal communities: Evidence from high‐throughput sequencingCited by: 12
Author(s): Witoon Purahong, Katherina A. Pietsch, Helge Bruelheide, Christian Wirth, François Buscot, Tesfaye Wubet
Software Mentions: 3
Published: almost 5 years ago
10.1093/aobpla/plab013
Male sterility significantly elevates shape variation and fluctuating asymmetry of zygomorphic corolla in gynodioecious <i>Glechoma hederacea</i> (Lamiaceae)Cited by: 4
Author(s): Jiří Neustupa, K. E. Woodard
Software Mentions: 3
Published: about 3 years ago