Projects: bioconductor: PAST

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PAST

Pathway Association Study Tool (PAST)
1 version
Latest release: about 3 years ago
4,613 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: IGBB (organization)
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses

Very Likely Science (100)

Papers Mentioning PAST 2,336

10.1371/journal.pone.0160852
Are Epiphytic Microbial Communities in the Carposphere of Ripening Grape Clusters (Vitis vinifera L.) Different between Conventional, Organic, and Biodynamic Grapes?
Cited by: 72
Author(s): Elizabeth Kecskeméti, Beate Berkelmann‐Löhnertz, Annette Reineke
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0093854
Long-Term Resilience of Late Holocene Coastal Subsistence System in Southeastern South America
Cited by: 65
Author(s): André Carlo Colonese, Matthew J. Collins, Alexandre Lucquin, Michael Eustace, Yvette Hancock, Raquel de Almeida Rocha Ponzoni, Alice Mora, Colin Smith, Paulo DeBlasis, Levy Figuti, Verônica Wesolowski, Cláudia Regina Plens, Sabine Eggers, Deisi Scunderlick Eloy de Farias, Andy Gledhill, Oliver E. Craig
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0086247
DNA Content Variation and Its Significance in the Evolution of the Genus Micrasterias (Desmidiales, Streptophyta)
Cited by: 13
Author(s): Aloisie Poulíèková, Petra Mazalová, Radim J. Vašut, Petra Šarhanová, Jiří Neustupa, Pavel Škaloud
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0109260
The Paleoecology, Habitats, and Stratigraphic Range of the Enigmatic Cretaceous Brachiopod Peregrinella
Cited by: 40
Author(s): Steffen Kiel, Johannes Glodny, Daniel Birgel, Luc G. Bulot, Kathleen A. Campbell, Christian Gaillard, Roberto Graziano, Andrzej Kaim, Iuliana Lazăr, Michael R. Sandy, Jörn Peckmann
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0101723
Carbohydrate-Free Peach (Prunus persica) and Plum (Prunus domestica) Juice Affects Fecal Microbial Ecology in an Obese Animal Model
Cited by: 38
Author(s): Giuliana Noratto, José F. García-Mazcorro, Melissa E. Markel, Hércia Stampini Duarte Martino, Yasushi Minamoto, Jörg M. Steiner, David Byrne, Jan S. Suchodolski, Susanne U. Mertens‐Talcott
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0187452
Evaluating causes of error in landmark-based data collection using scanners
Cited by: 51
Author(s): Brian Shearer, Siobhán B. Cooke, Lauren B. Halenar, Samantha L. Reber, Jeannette E. Plummer, Eric Delson, Melissa Tallman
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0037796
Bacterial Communities in the Sediments of Dianchi Lake, a Partitioned Eutrophic Waterbody in China
Cited by: 118
Author(s): Yaohui Bai, Qing Shi, Donghui Wen, Zongxun Li, William A. Jefferson, Chuanping Feng, Xiaoyan Tang
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0193206
Pigeons at the edge of the empire: Bioarchaeological evidences for extensive management of pigeons in a Byzantine desert settlement in the southern Levant
Cited by: 6
Author(s): Nimrod Marom, Baruch Rosen, Yotam Tepper, Guy Bar-Oz
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0068818
Effects of Bacillus amyloliquefaciens FZB42 on Lettuce Growth and Health under Pathogen Pressure and Its Impact on the Rhizosphere Bacterial Community
Cited by: 225
Author(s): Soumitra Paul Chowdhury, Kristin Dietel, Manuela Rändler, Michael Schmid, Helmut Junge, Rainer Borriss, Anton Hartmann, Rita Grosch
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0154050
Taxonomic and Environmental Variability in the Elemental Composition and Stoichiometry of Individual Dinoflagellate and Diatom Cells from the NW Mediterranean Sea
Cited by: 13
Author(s): Mariona Segura-Noguera, Dolors Blasco, José-Manuel Fortuño
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0141904
Ontogenetic Tooth Reduction in Stenopterygius quadriscissus (Reptilia: Ichthyosauria): Negative Allometry, Changes in Growth Rate, and Early Senescence of the Dental Lamina
Cited by: 9
Author(s): Daniel G. Dick, Erin E. Maxwell
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0124752
The Potential of Dark Septate Endophytes to Form Root Symbioses with Ectomycorrhizal and Ericoid Mycorrhizal Middle European Forest Plants
Cited by: 76
Author(s): Tereza Lukešová, Petr Kohout, Tomáš Větrovský, Martin Vohník
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0169971
A New Ophthalmosaurid (Ichthyosauria) from Svalbard, Norway, and Evolution of the Ichthyopterygian Pelvic Girdle
Cited by: 24
Author(s): Lene Liebe Delsett, Aubrey Jane Roberts, Patrick S. Druckenmiller, Jørn H. Hurum
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0076035
Why Does Amphibian Chytrid (Batrachochytrium dendrobatidis) Not Occur Everywhere? An Exploratory Study in Missouri Ponds
Cited by: 19
Author(s): Alexander T. Strauss, Kevin G. Smith
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0062569
Continuing Fragmentation of a Widespread Species by Geographical Barriers as Initial Step in a Land Snail Radiation on Crete
Cited by: 10
Author(s): Jan Sauer, Jens Oldeland, Bernhard Hausdorf
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0154389
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes
Cited by: 29
Author(s): Junya Yamagishi, Yukuto Sato, Natsuko O. Shinozaki, Bin Ye, Akito Tsuboi, Masao Nagasaki, Riu Yamashita
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0045701
Estimating Coextinction Risks from Epidemic Tree Death: Affiliate Lichen Communities among Diseased Host Tree Populations of Fraxinus excelsior
Cited by: 61
Author(s): Mari Jönsson, Gōran Thor
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pone.0186756
Benthic colonization in newly ice-free soft-bottom areas in an Antarctic fjord
Cited by: 24
Author(s): Cristian Lagger, Natalia Servetto, Luciana Torre, Ricardo Sahade
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0114576
Genome-Wide SNP-Genotyping Array to Study the Evolution of the Human Pathogen Vibrio vulnificus Biotype 3
Cited by: 14
Author(s): Nili Raz, Yael Danin‐Poleg, Ryan B. Hayman, Yudi Bar-On, Alex Linetsky, Michael Shmoish, Eva Sanjuán, Carmen Amaro, David R. Walt, Yechezkel Kashi
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0085501
Romanian Maize (Zea mays) Inbred Lines as a Source of Genetic Diversity in SE Europe, and Their Potential in Future Breeding Efforts
Cited by: 11
Author(s): Dana Şuteu, Ioan Băcilă, V. Haş, Ioan Haş, Mihai Miclăuș
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0029135
Evidence for a Grooming Claw in a North American Adapiform Primate: Implications for Anthropoid Origins
Cited by: 78
Author(s): Stephanie Maiolino, Douglas Boyer, Jonathan I. Bloch, Creighton Gilbert, Joseph Groenke
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0124738
Phytoplankton Composition and Abundance in Restored Maltański Reservoir under the Influence of Physico-Chemical Variables and Zooplankton Grazing Pressure
Cited by: 31
Author(s): Anna Kozák, Ryszard Gołdyn, Renata Dondajewska
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0234853
Languedoc lagoon environments and man: Building a modern analogue botanical macroremain database for understanding the role of water and edaphology in sedimentation dynamics of archaeobotanical remains at the Roman port of Lattara (Lattes, France)
Cited by: 1
Author(s): Bigna L. Steiner, Natàlia Alonso, Patrick Grillas, Christophe Jorda, Gaël Piquès, Margaux Tillier, Núria Rovira
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0125030
The Hand of Cercopithecoides williamsi (Mammalia, Primates): Earliest Evidence for Thumb Reduction among Colobine Monkeys
Cited by: 19
Author(s): Stephen R. Frost, Creighton Gilbert, Kelsey D. Pugh, Emily H. Guthrie, Eric Delson
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0087493
Genetic, Cytogenetic and Morphological Trends in the Evolution of the Rhodnius (Triatominae: Rhodniini) Trans-Andean Group
Cited by: 42
Author(s): Sebastián Pérez Díaz, Francisco Panzera, Nicolás Jaramillo-O, Ruben Pérez, R Armenta Fernández, Gustavo Adolfo Vallejo, Azäel Saldaña, José E. Calzada, Omar Triana-Chávez, Andrés Gómez-Palacio
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0157793
An Unusual New Theropod with a Didactyl Manus from the Upper Cretaceous of Patagonia, Argentina
Cited by: 47
Author(s): Sebastián Apesteguı́a, Nathan D. Smith, Rubén D. Juárez Valieri, Peter J. Makovicky
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0102794
Niche Partitioning in Sympatric Gorilla and Pan from Cameroon: Implications for Life History Strategies and for Reconstructing the Evolution of Hominin Life History
Cited by: 34
Author(s): Gabriele A. Macho, Julia A. Lee‐Thorp
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0037189
In Situ Identification of Plant-Invasive Bacteria with MALDI-TOF Mass Spectrometry
Cited by: 41
Author(s): Dominik Ziegler, Anna Mariotti, Valentin Pflüger, Maged M. Saad, Guido Vogel, Mauro Tonolla, Xavier Perret
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0006632
A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas
Cited by: 127
Author(s): Ahmed Hajri, Chrystelle Brin, Gilles Hunault, Frédéric Lardeux, Christophe Lemaire, Charles Manceau, Tristan Boureau, Stéphane Poussier
Software Mentions: 1
Published: about 17 years ago
10.1371/journal.pone.0134519
Development of Chloroplast Microsatellite Markers and Analysis of Chloroplast Diversity in Chinese Jujube (Ziziphus jujuba Mill.) and Wild Jujube (Ziziphus acidojujuba Mill.)
Cited by: 43
Author(s): Jian Huang, Xiaoting Yang, Chunmei Zhang, Xiao Yin, Shipeng Liu, Xingang Li
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0117003
New Insights into Samango Monkey Speciation in South Africa
Cited by: 73
Author(s): Desiré L. Dalton, Birthe Linden, Kirsten Wimberger, Lisa J. Nupen, Adrian S. W. Tordiffe, Peter J. Taylor, M. Thabang Madisha, Antoinette Kotzé
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0104427
Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin
Cited by: 27
Author(s): Adrien Vigneron, Perrine Cruaud, Erwan G. Roussel, Patricia Pignet, Jean‐Claude Caprais, Nolwenn Callac, Maria Ciobanu, Anne Godfroy, Barry A. Cragg, John Parkes, Joy D. Van Nostrand, Zhili He, Jizhong Zhou, Laurent Toffin
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0012380
Positive Feedback between Mycorrhizal Fungi and Plants Influences Plant Invasion Success and Resistance to Invasion
Cited by: 127
Author(s): Qian Zhang, Ruyi Yang, Jianjun Tang, Haishui Yang, Shuijin Hu, Xin Chen
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pone.0163357
Global Analysis of Type Three Secretion System and Quorum Sensing Inhibition of Pseudomonas savastanoi by Polyphenols Extracts from Vegetable Residues
Cited by: 11
Author(s): Carola Biancalani, Matteo Cerboneschi, Francesco Tadini‐Buoninsegni, Margherita Campo, Arianna Scardigli, Annalisa Romani, Stefania Tegli
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0131206
The Taxonomic and Phylogenetic Affinities of Bunopithecus sericus, a Fossil Hylobatid from the Pleistocene of China
Cited by: 10
Author(s): Alejandra Ortiz, Varsha Pilbrow, Catalina I. Villamil, Jessica G. Korsgaard, Shara E. Bailey, Terry Harrison
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0055555
Impact on Bacterial Community in Midguts of the Asian Corn Borer Larvae by Transgenic Trichoderma Strain Overexpressing a Heterologous chit42 Gene with Chitin-Binding Domain
Cited by: 8
Author(s): Yingying Li, Kehe Fu, Shigang Gao, Qiong Wu, Lili Fan, Yaqian Li, Jie Chen
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0055958
The Prey Pathway: A Regional History of Cattle (Bos taurus) and Pig (Sus scrofa) Domestication in the Northern Jordan Valley, Israel
Cited by: 40
Author(s): Nimrod Marom, Guy Bar-Oz
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0036904
Limb-Bone Scaling Indicates Diverse Stance and Gait in Quadrupedal Ornithischian Dinosaurs
Cited by: 33
Author(s): Susannah C. R. Maidment, Deborah H. Linton, Paul Upchurch, Paul M. Barrett
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0196560
Deforestation and stream warming affect body size of Amazonian fishes
Cited by: 38
Author(s): Paulo Ilha, Luís Schiesari, Fernando I. Yanagawa, Kathi Jo Jankowski, Carlos A. Navas
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0207910
Endogenous phytohormones of frankincense producing Boswellia sacra tree populations
Cited by: 8
Author(s): Abdul Latif Khan, Fazal Mabood, Fazal Akber, Amjad Ali, Raheem Shahzad, Ahmed Al‐Harrasi, Ahmed Al‐Rawahi, Zabta Khan Shinwari, In‐Jung Lee
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0097157
Considering the Role of Time Budgets on Copy-Error Rates in Material Culture Traditions: An Experimental Assessment
Cited by: 32
Author(s): Kerstin Schillinger, Alex Mesoudi, Stephen J. Lycett
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0098605
The Functional and Palaeoecological Implications of Tooth Morphology and Wear for the Megaherbivorous Dinosaurs from the Dinosaur Park Formation (Upper Campanian) of Alberta, Canada
Cited by: 59
Author(s): Jordan C. Mallon, J. G. C. Anderson
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0176573
The functional microbiome of arthropods
Cited by: 73
Author(s): Mauro Degli Esposti, Esperanza Martínez‐Romero
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0205484
Spatial and temporal distribution of Polycyclic Aromatic Hydrocarbons (PAHs) in sediments from Poyang Lake, China
Cited by: 13
Author(s): Qianyu Li, Jing Wu, Zhonghua Zhao
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0084960
Comparison of the Bacterial Composition and Structure in Symptomatic and Asymptomatic Endodontic Infections Associated with Root-Filled Teeth Using Pyrosequencing
Cited by: 60
Author(s): Anne B. M. Anderson, Ali Al‐Ahmad, Fadil Elamin, Daniel E Jonas, Yousra Mirghani, Markus B. Schilhabel, Lamprini Karygianni, Elmar Hellwig, Ateequr Rehman
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0115576
Microbial Community Structure and Diversity in an Integrated System of Anaerobic-Aerobic Reactors and a Constructed Wetland for the Treatment of Tannery Wastewater in Modjo, Ethiopia
Cited by: 47
Author(s): Aklilu Feleke, Fassil Assefa, Seyoum Leta, Francesca Stomeo, Mark Wamalwa, Moses Njahira, Appolinaire Djikeng
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0064432
Adaptive Selection on Bracovirus Genomes Drives the Specialization of Cotesia Parasitoid Wasps
Cited by: 47
Author(s): Séverine Jancek, Annie Bézier, Philippe Gayral, Corentin Paillusson, Laure Kaiser, Stéphane Dupas, Bruno Pierre Le Rü, Valérie Barbe, Georges Périquet, Jean‐Michel Drezen, Elisabeth A. Herniou
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0117024
Patterns in Benthic Biodiversity Link Lake Trophic Status to Structure and Potential Function of Three Large, Deep Lakes
Cited by: 5
Author(s): Barbara Hayford, Andrea M. Caires, Sudeep Chandra, Scott F. Girdner
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0187599
Local ecological knowledge and its relationship with biodiversity conservation among two Quilombola groups living in the Atlantic Rainforest, Brazil
Cited by: 19
Author(s): Bruno Esteves Conde, Tamara Ticktin, Amanda Surerus Fonseca, Arthur Ladeira Macedo, Timothy Ongaro Orsi, Luciana Moreira Chedier, Eliana Rodrigues, Daniel S. Pimenta
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0137060
Ontogeny of the Middle-Ear Air-Sinus System in Alligator mississippiensis (Archosauria: Crocodylia)
Cited by: 62
Author(s): David Dufeau, Lawrence M. Witmer
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0015897
Response of Archaeal Communities in the Rhizosphere of Maize and Soybean to Elevated Atmospheric CO2 Concentrations
Cited by: 27
Author(s): David M. Nelson, Isaac Cann, Roderick I. Mackie
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0131055
Neurocranium versus Face: A Morphometric Approach with Classical Anthropometric Variables for Characterizing Patterns of Cranial Integration in Extant Hominoids and Extinct Hominins
Cited by: 12
Author(s): Juan A. Pérez-Claros, Juan Manuel Jiménez‐Arenas, Paul Palmqvist
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0184955
Immune-modulatory genomic properties differentiate gut microbiota of infants with and without eczema
Cited by: 12
Author(s): Sung-Tag Oh, Gaik Chin Yap, Pei‐Ying Hong, Chiung Hui Huang, Marion Aw, Lynette Pei‐Chi Shek, Wen Tso Liu, Bee Wah Lee
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0079660
Double Deception: Ant-Mimicking Spiders Elude Both Visually- and Chemically-Oriented Predators
Cited by: 19
Author(s): Divya Uma, Caitlin A. Durkee, Gudrun Herzner, Martha R. Weiss
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0023225
Multifunctionality and Diversity in Bacterial Biofilms
Cited by: 96
Author(s): Hannes Peter, Irene Ylla, Cristian Gudasz, Anna M. Romaní, Sergi Sabater, Lars J. Tranvik
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0190905
Cells containing aragonite crystals mediate responses to gravity in Trichoplax adhaerens (Placozoa), an animal lacking neurons and synapses
Cited by: 35
Author(s): Tatiana D. Mayorova, Carolyn L. Smith, Katherine Hammar, Christine A. Winters, N. B. Pivovarova, Maria A. Aronova, Richard D. Leapman, Thomas S. Reese
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0082780
Morphology, Chemistry and Function of the Postpharyngeal Gland in the South American Digger Wasps Trachypus boharti and Trachypus elongatus
Cited by: 10
Author(s): Gudrun Herzner, Martin Kaltenpoth, Theodor Poettinger, Katharina Weiß, Dirk Koedam, Johannes Kroiß, Erhard Strohm
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0250861
Pathway-based analysis of anthocyanin diversity in diploid potato
Cited by: 8
Author(s): Maria Angelica Parra-Galindo, Johana Carolina Soto-Sedano, Teresa Mosquera, Federico Roda
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0125074
Mixed Signals? Morphological and Molecular Evidence Suggest a Color Polymorphism in Some Neotropical Polythore Damselflies
Cited by: 9
Author(s): Melissa Sánchez Herrera, William R. Kuhn, M. Olalla Lorenzo-Carballa, Kathleen M. Harding, Nikole Ankrom, Thomas N. Sherratt, Joachim Hoffmann, Hans Van Gossum, Jessica L. Ware, Adolfo Cordero‐Rivera, Christopher D. Beatty
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0220188
Complementary approaches to tooth wear analysis in Tritylodontidae (Synapsida, Mammaliamorpha) reveal a generalist diet
Cited by: 7
Author(s): Daniela C. Kalthoff, Ellen Schulz‐Kornas, Ian J. Corfe, Thomas Martin, Stephen McLoughlin, Julia A. Schultz
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0098784
Multifaceted Defense against Antagonistic Microbes in Developing Offspring of the Parasitoid Wasp Ampulex compressa (Hymenoptera, Ampulicidae)
Cited by: 11
Author(s): Katharina Weiß, Christopher Parzefall, Gudrun Herzner
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0200550
Soil organic matter and CO2 fluxes in small tropical watersheds under forest and cacao agroforestry
Cited by: 11
Author(s): Eline Nayara Dantas da Costa, Marcelo Friederichs Landim de Souza, Paulo César Lima Marrocos, Dan Lobão, Daniela Mariano Lopes da Silva
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0127866
Medicinal Plants Recommended by the World Health Organization: DNA Barcode Identification Associated with Chemical Analyses Guarantees Their Quality
Cited by: 117
Author(s): Rafael Melo Palhares, Marcela Gonçalves Drummond, Bruno S. A. F. Brasil, Gustavo Pereira Cosenza, Maria das Graças Lins Brandão, Guilherme Oliveira
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0233626
ATR-FTIR spectroscopy as adjunct method to the microscopic examination of hematoxylin and eosin-stained tissues in diagnosing lung cancer
Cited by: 22
Author(s): Ruth Bangaoil, Abegail Santillan, Lara Mae Angeles, Lorenzo Abanilla, Antonio Lim, Ma. Cristina Ramos, Allan Fellizar, Leonardo A. Guevarra, Pia Marie Albano
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0225833
Composition and structure of the culturable gut bacterial communities in Anopheles albimanus from Colombia
Cited by: 14
Author(s): Yadira Galeano-Castañeda, Paula Andrea Urrea-Aguirre, Stefani Piedrahita, Priscila Bascuñán, Margarita M. Correa
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0215466
Glyphosate, but not its metabolite AMPA, alters the honeybee gut microbiota
Cited by: 95
Author(s): Nicolas Blot, Loïs Veillat, Régis Rouzé, Hélène Delatte
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0110029
Latitudinal Environmental Niches and Riverine Barriers Shaped the Phylogeography of the Central Chilean Endemic Dioscorea humilis (Dioscoreaceae)
Cited by: 10
Author(s): Juan Viruel, Pilar Catalán, José Gabriel Segarra‐Moragues
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0129878
Evaluation of a Push-Pull Approach for Aedes aegypti (L.) Using a Novel Dispensing System for Spatial Repellents in the Laboratory and in a Semi-Field Environment
Cited by: 18
Author(s): Ulla Obermayr, Joachim Rüther, Ulrich R. Bernier, Andreas Rose, Martin Geier
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0130334
The Role of Storage Lipids in the Relation between Fecundity, Locomotor Activity, and Lifespan of Drosophila melanogaster Longevity-Selected and Control Lines
Cited by: 16
Author(s): Neda Nasiri Moghadam, Martin Holmstrup, Tommaso Manenti, Marie Brandt Mouridsen, Cino Pertoldi, Volker Loeschcke
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0057486
Identification of Cryptic Anopheles Mosquito Species by Molecular Protein Profiling
Cited by: 80
Author(s): Pie Müller, Valentin Pflüger, Matthias Wittwer, Dominik Ziegler, Fabrice Chandre, Frédéric Simard, Christian Lengeler
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0104990
Detection of Genome Donor Species of Neglected Tetraploid Crop Vigna reflexo-pilosa (Créole Bean), and Genetic Structure of Diploid Species Based on Newly Developed EST-SSR Markers from Azuki Bean (Vigna angularis)
Cited by: 40
Author(s): Sompong Chankaew, Takehisa Isemura, Sachiko Isobe, Akito Kaga, Norihiko Tomooka, Prakit Somta, Hideki Hirakawa, Kenta Shirasawa, Duncan A. Vaughan, Peerasak Srinives
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0201741
Evaluating freshwater macroinvertebrates from eDNA metabarcoding: A river Nalón case study
Cited by: 48
Author(s): Sara Fernández, S. E. Rodriguez, José Luis Martínez, Yaisel J. Borrell, Alba Ardura, Eva García‐Vázquez
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0246665
Ecological restoration of habitats invaded by Leucanthemum vulgare that alters key ecosystem functions
Cited by: 3
Author(s): Mohd Asgar Khan, K. Jahir Hussain, Manzoor Ahmad Shah
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0057150
Dendritic Polyglycerolsulfate Near Infrared Fluorescent (NIRF) Dye Conjugate for Non-Invasively Monitoring of Inflammation in an Allergic Asthma Mouse Model
Cited by: 34
Author(s): Stefania Biffi, Simeone Dal Monego, Christian Dullin, Chiara Garrovo, Berislav Bošnjak, Kai Licha, Pia Welker, Michelle M. Epstein, Frauke Alves
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0254151
Tooth wear development in the Australian Aboriginal dentition from Yuendumu: A longitudinal study
Cited by: 0
Author(s): Jin Young Lee, Sarah Fung, Robin Yong, Sarbin Ranjitkar, John Kaidonis, Alistair R. Evans, Luca Fiorenza
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0227774
Differential effects of synthetic psychoactive cathinones and amphetamine stimulants on the gut microbiome in mice
Cited by: 28
Author(s): Mariana Angoa‐Pérez, Branislava Zagorac, Andrew D. Winters, Jonathan M. Greenberg, Madison M. Ahmad, Kevin R. Theis, Donald M. Kuhn
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0144866
Intra-Site Variability in the Still Bay Fauna at Blombos Cave: Implications for Explanatory Models of the Middle Stone Age Cultural and Technological Evolution
Cited by: 30
Author(s): Emmanuel Discamps, Christopher S. Henshilwood
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0116585
Predominant Campylobacter jejuni Sequence Types Persist in Finnish Chicken Production
Cited by: 39
Author(s): Ann-Katrin Llarena, Adeline Huneau, Marjaana Hakkinen, Marja‐Liisa Hänninen
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0238888
A sting affair: A global quantitative exploration of bee, wasp and ant hosts of velvet ants
Cited by: 6
Author(s): Federico Ronchetti, Carlo Polidori
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0147633
Population Genetic Structure and Reproductive Strategy of the Introduced Grass Centotheca lappacea in Tropical Land-Use Systems in Sumatra
Cited by: 0
Author(s): Ladislav Hodač, Fuad Bahrul Ulum, Nicole Opfermann, Natalie Breidenbach, Diego Hojsgaard, S. Tjitrosoedirdjo, Barbara Vornam, Reiner Finkeldey, Elvira Hörandl
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0218834
Oil degradation potential of microbial communities in water and sediment of Baltic Sea coastal area
Cited by: 28
Author(s): Hanna Miettinen, Malin Bomberg, Mari Nyyssönen, Anna Reunamo, Kirsten S. Jørgensen, Minna Vikman
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0117473
Ubiquity and Diversity of Heterotrophic Bacterial nasA Genes in Diverse Marine Environments
Cited by: 15
Author(s): Xuexia Jiang, Hongyue Dang, Nianzhi Jiao
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0169140
Effectiveness of Devices to Monitor Biofouling and Metals Deposition on Plumbing Materials Exposed to a Full-Scale Drinking Water Distribution System
Cited by: 23
Author(s): Maneesha P. Ginige, S. Garbin, Jason Wylie, K. S. Krishna
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0186476
New records of the dolphin Albertocetus meffordorum (Odontoceti: Xenorophidae) from the lower Oligocene of South Carolina: Encephalization, sensory anatomy, postcranial morphology, and ontogeny of early odontocetes
Cited by: 24
Author(s): Robert W. Boessenecker, Erum Ahmed, Jonathan H. Geisler
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0242480
Anatomical changes induced by isolates of Trichoderma spp. in soybean plants
Cited by: 2
Author(s): Camilla Martins de Oliveira, Nayane Oliveira Almeida, Mara Rúbia da Rocha, Maria Helena Rezende, Renê Gonçalves da Silva Carneiro, Cirano José Ulhôa
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0213176
Fungicides have complex effects on the wheat phyllosphere mycobiome
Cited by: 26
Author(s): Kamilla Knorr, Lise Nistrup Jørgensen, Mogens Nicolaisen
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0232180
Differentiating salmonid migratory ecotypes through stable isotope analysis of collagen: Archaeological and ecological applications
Cited by: 22
Author(s): Eric J. Guiry, Thomas C.A. Royle, R. G. Matson, Hillary G. M. Ward, Tyler Weir, Nicholas Waber, Thomas J. Brown, Brian P. V. Hunt, Michael H. H. Price, Bruce P. Finney, Masahide Kaeriyama, Yuxue Qin, Dongya Yang, Paul Szpak
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0098454
Diversity and Communities of Foliar Endophytic Fungi from Different Agroecosystems of Coffea arabica L. in Two Regions of Veracruz, Mexico
Cited by: 47
Author(s): Aurora Saucedo‐García, Ana Luisa Anaya, Francisco J. Espinosa‐García, Marcela Hebe González
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0063115
Shake a Tail Feather: The Evolution of the Theropod Tail into a Stiff Aerodynamic Surface
Cited by: 30
Author(s): Michael Pittman, Stephen M. Gatesy, Paul Upchurch, Anjali Goswami, John R. Hutchinson
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0189768
Randomized clinical trial to evaluate the effect of fecal microbiota transplant for initial Clostridium difficile infection in intestinal microbiome
Cited by: 38
Author(s): Adrián Camacho-Ortíz, Eva María Gutiérrez-Delgado, José F. García-Mazcorro, Soraya Mendoza-Olazarán, Adrián Martínez-Meléndez, Laura Paláu-Dávila, Simon D. Baines, Héctor Jesús Maldonado-Garza, Elvira Garza‐González
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0144919
Different Evolutionary History for Basque Diaspora Populations in USA and Argentina Unveiled by Mitochondrial DNA Analysis
Cited by: 4
Author(s): Miriam Baeta, Carolina Núñez, Sergio Cardoso, Leire Palencia-Madrid, Sergio Piñeiro‐Hermida, Miren Arriba-Barredo, María Jesús Villanueva-Millán, Marian M. de Pancorbo
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0209093
Agroecological coffee management increases arbuscular mycorrhizal fungi diversity
Cited by: 34
Author(s): Paulo Prates Júnior, Bruno Coutinho Moreira, Marliane de Cássia Soares da Silva, Tomás Gomes Reis Veloso, Sidney Luiz Stürmer, Raphael Bragança Alves Fernandes, Eduardo de Sá Mendonça, Maria Catarina Megumi Kasuya
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0024447
On the Relationship between Sialomucin and Sulfomucin Expression and Hydrogenotrophic Microbes in the Human Colonic Mucosa
Cited by: 76
Author(s): Jennifer A. Croix, Franck Carbonero, Gerardo M. Nava, Mark A. Russell, E. P. Greenberg, H. Rex Gaskins
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0197214
5000 years of dietary variations of prehistoric farmers in the Great Hungarian Plain
Cited by: 17
Author(s): Beatriz Gamarra, Rachel Howcroft, Ashley McCall, János Dani, Zsigmond Hajdú, Emese Gyöngyvér Nagy, L. Szabó, László Domboróczki, Ildikó Pap, Pál Raczky, Antónia Marcsik, Zsuzsanna K. Zoffmann, Tamás Hajdu, Robin N. M. Feeney, Ron Pinhasi
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0073177
AFLP Polymorphisms Allow High Resolution Genetic Analysis of American Tegumentary Leishmaniasis Agents Circulating in Panama and Other Members of the Leishmania Genus
Cited by: 14
Author(s): Carlos M. Restrepo, Carolina De La Guardia, Octávio E. Sousa, José E. Calzada, Patricia L. Fernández, Ricardo Lleonart
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0057770
Exploring the Diversity and Distribution of Neotropical Avian Malaria Parasites – A Molecular Survey from Southeast Brazil
Cited by: 89
Author(s): Gustavo Augusto Lacorte, Gabriel M. F. Félix, Rafael Barros Pereira Pinheiro, Anderson V. Chaves, Gilberto Almeida-Neto, Frederico S. Neves, Lemuel Olívio Leite, Fabrício R. Santos, Érika Martins Braga
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0206031
Taxonomic validation of five fish species of subfamily Barbinae from the Ganga river system of northern India using traditional and truss analyses
Cited by: 15
Author(s): Deepmala Gupta, Arvind Kumar Dwivedi, Madhu Tripathi
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0081500
Metabolic Footprint Analysis Uncovers Strain Specific Overflow Metabolism and D-Isoleucine Production of Staphylococcus Aureus COL and HG001
Cited by: 39
Author(s): Kirsten Dörries, Michael Lalk
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0049511
The Role of Sexual Selection and Conflict in Mediating Among-Population Variation in Mating Strategies and Sexually Dimorphic Traits in Sepsis punctum
Cited by: 14
Author(s): Caitlin Dmitriew, Wolf U. Blanckenhorn
Software Mentions: 1
Published: almost 14 years ago
10.1002/ece3.4368
Asymmetric hybridization in <i>Cordulegaster</i> (Odonata: Cordulegastridae): Secondary postglacial contact and the possible role of mechanical constraints
Cited by: 16
Author(s): Emanuela Solano, Sönke Hardersen, Paolo Audisio, Valentina Amorosi, Gabriele Senczuk, Giovanni Antonini
Software Mentions: 1
Published: about 8 years ago