bioconductor: MIRA | Projects | Ecosyste.ms: Papers

10.1093/gbe/evu214

Extensive Horizontal Gene Transfer during Staphylococcus aureus Co-colonization In Vivo
Cited by: 106
Author(s): Alex J. McCarthy, Anette Loeffler, Adam A. Witney, Katherine A. Gould, D. H. Lloyd, Jodi A. Lindsay
Software Mentions: 1
Published: about 10 years ago

10.1093/gbe/evy222

Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories of Organelles
Cited by: 25
Author(s): Jun Mo Lee, Hae Jung Song, Seung In Park, Yu Min Lee, So Young Jeong, Tae Oh Cho, Jihee Kim, Han-Gu Choi, Chang Geun Choi, Wendy A. Nelson, Suzanne Fredericq, Debashish Bhattacharya, Hwan Su Yoon
Software Mentions: 1
Published: about 6 years ago

10.1186/s13742-016-0120-y

Mitochondrial metagenomics: letting the genes out of the bottle
Cited by: 94
Author(s): Alex Crampton‐Platt, Douglas W. Yu, Xin Zhou, Alfried P. Vogler
Software Mentions: 1
Published: over 8 years ago

10.1080/16549716.2017.1330858

Experiences in running a complex electronic data capture system using mobile phones in a large-scale population trial in southern Nepal
Cited by: 33
Author(s): Sarah Style, B James Beard, Helen Harris‐Fry, Aman Sengupta, Sonali Jha, Bhim P. Shrestha, Anjana Rai, Vikas Paudel, Meelan Thondoo, Anni-Maria Pulkki-Brännström, Jolene Skordis‐Worrall, Dharma S Manandhar, Anthony Costello, Naomi Saville
Software Mentions: 1
Published: almost 8 years ago

10.1186/1757-4749-5-7

Draft genome of Ochrobactrum intermedium strain M86 isolated from non-ulcer dyspeptic individual from India
Cited by: 11
Author(s): Girish Kulkarni, Dhiraj Dhotre, Mahesh Dharne, Sudarshan A. Shetty, Somak Chowdhury, Vatsala Misra, Sambuddha Misra, Milind S. Patole, Yogesh S. Shouche
Software Mentions: 1
Published: over 11 years ago

10.1093/heapro/dav099

Disabled women's attendance at community women's groups in rural Nepal
Cited by: 5
Author(s): Joanna Morrison, Tim Colbourn, Bharat Budhathoki, Aman Sen, Dhruba Adhikari, Jyoti Bamjan, Shrijana Pathak, Anil Basnet, Jean-François Trani, Anthony Costello, Dharma S Manandhar, Nora Groce
Software Mentions: 1
Published: about 9 years ago

10.1111/hel.12587

Complete genome sequence of Helicobacter pylori B128 7.13 and a single‐step method for the generation of unmarked mutations
Cited by: 1
Author(s): Emma M. Dawson, Karl A. Dunne, Emily J. Richardson, Judyta Praszkier, Dana Alfawaz, Simon Woelfel, Amanda De Paoli, Hassan Chaudhry, Ian R. Henderson, Richard L. Ferrero, Amanda E. Rossiter
Software Mentions: 1
Published: over 5 years ago

10.1007/s00420-015-1067-5

Aerobic exercise reduces biomarkers related to cardiovascular risk among cleaners: effects of a worksite intervention RCT
Cited by: 14
Author(s): Mette Korshøj, Marie Højbjerg Ravn, Andreas Holtermann, Åse Marie Hansen, Peter Krustrup
Software Mentions: 1
Published: over 9 years ago

10.1128/JB.00370-19

Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host
Cited by: 20
Author(s): Leonardo Furi, Liam A. Crawford, Guillermo Rangel-Piñeros, Ana Sousa Manso, Megan De Ste Croix, Richard D. Haigh, Min Jung Kwun, Kristine E. Fjelland, Gregor D. Gilfillan, Stephen D. Bentley, Nicholas J. Croucher, Martha R. J. Clokie, Marco R. Oggioni
Software Mentions: 1
Published: about 5 years ago

10.1093/jxb/ert274

LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance
Cited by: 112
Author(s): Julien Delahaie, Michaela Hundertmark, Jérôme Bove, Olivier Leprince, Hélène Rogniaux, Julia Buitink
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1006179

Co-infecting Reptarenaviruses Can Be Vertically Transmitted in Boa Constrictor
Cited by: 32
Author(s): Saskia Keller, Udo Hetzel, Tarja Sironen, Yegor Korzyukov, Olli Vapalahti, Anja Kipar, Jussi Hepojoki
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1007513

Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium
Cited by: 46
Author(s): Harald Oey, Martha Zakrzewski, Kerstin Gravermann, Neil D. Young, Pasi K. Korhonen, Geoffrey N. Gobert, Sujeevi Nawaratna, Shihab Hasan, David Murillo Martinez, Hong You, Martin F. Lavin, Malcolm K. Jones, Mark A. Ragan, Jens Stoye, Ana Oleaga, Aidan M. Emery, Bonnie L. Webster, David Rollinson, Robin B. Gasser, Donald P. McManus, Lutz Krause
Software Mentions: 1
Published: almost 6 years ago

10.1098/rsos.160651

Next Gen Pop Gen: implementing a high-throughput approach to population genetics in boarfish (Capros aper)
Cited by: 22
Author(s): Edward D. Farrell, Jeanette E. L. Carlsson, Jens Carlsson
Software Mentions: 1
Published: almost 8 years ago

10.1098/rsos.170758

Phylogeny of Anophelinae using mitochondrial protein coding genes
Cited by: 69
Author(s): Peter G. Foster, Tatiane Marques Porangaba de Oliveira, Eduardo Sterlino Bergo, Jan E. Conn, Denise Cristina Sant'Ana, Sandra Sayuri Nagaki, Silvio Shigueo Nihei, Carlos José Einicker Lamas, Christian R. González, Caio Cesar Moreira, Maria Anice Mureb Sallum
Software Mentions: 1
Published: about 7 years ago

10.1098/rsos.210474

Mitochondrial DNA sequencing of a wet-collection syntype demonstrates the importance of type material as genetic resource for lantern shark taxonomy (Chondrichthyes: Etmopteridae)
Cited by: 6
Author(s): Nicolas Straube, Michaela Preick, Gavin J. P. Naylor, Michael Hofreiter
Software Mentions: 1
Published: about 3 years ago

10.21203/rs.3.rs-51964/v1

A large-scale database of T-cell receptor beta (TCRβ) sequences and binding associations from natural and synthetic exposure to SARS-CoV-2.
Cited by: 85
Author(s): Sean Nolan, Marissa Vignali, Mark Klinger, Jennifer N. Dines, Ian M. Kaplan, Emily Svejnoha, Tracy Craft, Katie Boland, Mitch Pesesky, Rachel Gittelman, Thomas M. Snyder, Christopher J Gooley, Simona Semprini, Claudio Cerchione, Massimiliano Mazza, Ottavia M. Delmonte, Kerry Dobbs, Gonzalo Carreño‐Tarragona, Santiago Barrio, Vittorio Sambri, Giovanni Martinelli, Jason D. Goldman, James R. Heath, Luigi D. Notarangelo, Jonathan M. Carlson, Joaquín Martínez‐López, Harlan Robins
Software Mentions: 1
Published: over 4 years ago

10.1186/1742-4690-10-35

Identification of diverse full-length endogenous betaretroviruses in megabats and microbats
Cited by: 46
Author(s): Joshua A. Hayward, Mary Tachedjian, Jie Cui, Hume Field, Edward C. Holmes, Lin‐Fa Wang, Gilda Tachedjian
Software Mentions: 1
Published: over 11 years ago

10.1038/srep13258

Assessing the genetic diversity of Cu resistance in mine tailings through high-throughput recovery of full-length copA genes
Cited by: 26
Author(s): Xiaofang Li, Yan Zhu, Babak Shaban, Timothy J. C. Bruxner, Philip L. Bond, Longbin Huang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep14244

Characterization of the Transcriptional Complexity of the Receptive and Pre-receptive Endometria of Dairy Goats
Cited by: 27
Author(s): Lei Zhang, Xiaopeng An, Xiaorui Liu, Mingzhe Fu, Ping Han, Jian Peng, Jingxing Hou, Ziqing Zhou, Binyun Cao, Yuxuan Song
Software Mentions: 1
Published: about 9 years ago

10.1038/srep14569

A peptide factor secreted by Staphylococcus pseudintermedius exhibits properties of both bacteriocins and virulence factors
Cited by: 43
Author(s): Benedykt Władyka, Marcin Piejko, Monika Bzowska, Piotr Pieta, Monika Krzysik, Łukasz Mazurek, Ibeth Guevara-Lora, Michał Bukowski, Artur J. Sabat, Alexander Friedrich, Emilia Bonar, Jacek Międzobrodzki, Adam Dubin, Paweł Mak
Software Mentions: 1
Published: about 9 years ago

10.1038/srep29495

Cosmid based mutagenesis causes genetic instability in Streptomyces coelicolor, as shown by targeting of the lipoprotein signal peptidase gene
Cited by: 4
Author(s): John Munnoch, David A. Widdick, Govind Chandra, Iain C. Sutcliffe, Tracy Palmer, Matthew I. Hutchings
Software Mentions: 1
Published: over 8 years ago

10.1038/srep35112

Penicillium arizonense, a new, genome sequenced fungal species, reveals a high chemical diversity in secreted metabolites
Cited by: 34
Author(s): Sietske Grijseels, Jens Nielsen, Milica Randelovic, Jens Nielsen, Kristian Fog Nielsen, Mhairi Workman, Jens Christian Frisvad
Software Mentions: 1
Published: about 8 years ago

10.1038/srep36647

BAC-pool sequencing and analysis confirms growth-associated QTLs in the Asian seabass genome
Cited by: 4
Author(s): Xueyan Shen, Si Yan Ngoh, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Pranjali Bhandare, Andy Wee Kiat Tan, Gui Quan Tan, Siddharth Singh, Norman Phua, Shubha Vij, László Orbán
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-03157-2

Functional characterization of Aquaporin-like genes in the human bed bug Cimex lectularius
Cited by: 14
Author(s): Hitoshi Tsujimoto, Joyce M. Sakamoto, Jason L. Rasgon
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-05478-8

Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence
Cited by: 18
Author(s): Mir Asif Iquebal, R. S. Tomar, M. V. Parakhia, Deepak Singla, Sarika Jaiswal, Visha M. Rathod, Shital Padhiyar, Neeraj Kumar, Anil Rai, Dinesh Kumar
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-20548-1

Transcriptome sequence analysis and mining of SSRs in Jhar Ber (Ziziphus nummularia (Burm.f.) Wight & Arn) under drought stress
Cited by: 8
Author(s): Radha Yadav, Showkat Ahmad Lone, Kishor Gaikwad, Nagendra Singh, Jasdeep Chatrath Padaria
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-27558-z

Ruminant and chicken: important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015
Cited by: 41
Author(s): Amandine Thépault, Valérie Rose, Ségolène Quesne, Typhaine Poëzévara, Véronique Béven, Edouard Hirchaud, Fabrice Touzain, Pierrick Lucas, Guillaume Méric, Leonardos Mageiros, Samuel K. Sheppard, Marianne Chemaly, Katell Rivoal
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29826-4

Gomesin inhibits melanoma growth by manipulating key signaling cascades that control cell death and proliferation
Cited by: 36
Author(s): Maria P. Ikonomopoulou, Manuel A. Fernández‐Rojo, Sandy S. Pineda, Pablo Cabezas-Sáinz, Brit Winnen, Rodrigo Morales, Andreas Brust, Laura Sánchez, Paul F. Alewood, Grant A. Ramm, John J. Miles, Glenn F. King
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-38621-8

Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
Cited by: 29
Author(s): Duckhyun Lhee, Ji-San Ha, Sun-Ju Kim, Myung Gil Park, Debashish Bhattacharya, Hwan Su Yoon
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45153-8

Hypergravity disrupts murine intestinal microbiota
Cited by: 19
Author(s): Corentine Alauzet, Lisiane Cunat, Maxime Wack, Alain Lozniewski, Hélène Busby, Nelly Agrinier, Catherine Cailliez‐Grimal, Jean-Pol Frippiat
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50753-5

Population recovery changes population composition at a major southern Caribbean juvenile developmental habitat for the green turtle, Chelonia mydas
Cited by: 13
Author(s): Jurjan P van der Zee, Marjolijn J. A. Christianen, Mabel Nava, Ximena Vélez‐Zuazo, Wensi Hao, Martine Bérubé, Hanneke Van Lavieren, Michael Hiwat, Rachel Berzins, Johan Chevalier, Damien Chevallier, Marie-Clélia Lankester, Karen A. Bjorndal, Alan B. Bolten, Leontine E. Becking, Per Palsbøll
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-66419-6

Hesperidin Loaded on Gold Nanoparticles as a Drug Delivery System for a Successful Biocompatible, Anti-Cancer, Anti-Inflammatory and Phagocytosis Inducer Model
Cited by: 145
Author(s): Ghassan M. Sulaiman, Hanaa M. Waheeb, Majid S. Jabir, Shaymaa H. Khazaal, Yaser Hassan Dewir, Yougasphree Naidoo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-91956-z

Development of a capture sequencing assay for enhanced detection and genotyping of tick-borne pathogens
Cited by: 5
Author(s): Komal Jain, Teresa Tagliafierro, Adriana Marques, Santiago Sánchez-Vicente, Alper Gokden, Brian A. Fallon, Nischay Mishra, Thomas Briese, Vishal Kapoor, Stephen Sameroff, Cheng Guo, Luis A. Marcos, Linden T. Hu, W. Ian Lipkin, Rafal Tokarz
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-95977-6

Wide range and highly linear signal processed systematic humidity sensor array using Methylene Blue and Graphene composite
Cited by: 7
Author(s): Muhammad Umair Khan, Gul Hassan, Rayyan Ali Shaukat, Qazi Muhammad Saqib, Mahesh Y. Chougale, Jungmin Kim, Jinho Bae
Software Mentions: 1
Published: over 3 years ago

10.3390/s19010049

An Optimization Routing Algorithm Based on Segment Routing in Software-Defined Networks
Cited by: 16
Author(s): Xiaolan Hou, Wu Muqing, Min Zhao
Software Mentions: 1
Published: almost 6 years ago

10.3390/s19224943

Human 3D Pose Estimation with a Tilting Camera for Social Mobile Robot Interaction
Cited by: 20
Author(s): Mercedes Garcia-Salguero, Javier González-Jiménez, Francisco-Ángel Moreno
Software Mentions: 1
Published: about 5 years ago

10.3390/s21186213

Robot-Assisted Gait Self-Training: Assessing the Level Achieved
Cited by: 4
Author(s): Andrea Scheidig, Benjamin Schütz, Thanh Q. Trinh, Alexander Vorndran, Anke Mayfarth, Christian Sternitzke, Eric Röhner, Horst–Michael Groß
Software Mentions: 1
Published: about 3 years ago

10.1186/s40064-016-2637-z

Nonsurgical periodontal treatment reduced aortic inflammation in ApoE−/− mice with periodontitis
Cited by: 14
Author(s): Di Cui, Houxuan Li, Lang Lei, Changxing Chen, Fuhua Yan
Software Mentions: 1
Published: over 8 years ago

10.4056/sigs.4758653

Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033
Cited by: 26
Author(s): Adnan Niazi, Shahid Manzoor, Sarosh Bejai, Johan Meijer, Erik Bongcam‐Rudloff
Software Mentions: 1
Published: almost 11 years ago

10.1186/1944-3277-9-23

Draft genome sequence of Bacillus azotoformans MEV2011, a (Co-) denitrifying strain unable to grow with oxygen
Cited by: 4
Author(s): Maja Hykkelbjerg Nielsen, Lars Schreiber, Kai Finster, Andreas Schramm
Software Mentions: 1
Published: almost 10 years ago

10.1186/1944-3277-9-16

Complete genome sequence of Ornithobacterium rhinotracheale strain ORT-UMN 88
Cited by: 9
Author(s): Emilie S. Zehr, Darrell O. Bayles, William D. Boatwright, Louisa B. Tabatabai, Karen B. Register
Software Mentions: 1
Published: almost 10 years ago

10.1186/1944-3277-9-14

Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791
Cited by: 2
Author(s): Emilie S. Zehr, Darrell O. Bayles, William D. Boatwright, Louisa B. Tabatabai, Karen B. Register
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40793-015-0016-y

Genome sequence of Clostridium sporogenes DSM 795T, an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum
Cited by: 12
Author(s): Anja Poehlein, Karin Riegel, Sandra M König, Andreas Leimbach, Rolf Daniel, Peter Dürre
Software Mentions: 1
Published: over 9 years ago

10.1186/s40793-015-0040-y

Permanent draft genome sequence of Acidiphilium sp. JA12-A1
Cited by: 23
Author(s): Sophie R. Ullrich, Anja Poehlein, Sonja Voget, Michael Hoppert, Rolf Daniel, Andreas Leimbach, Judith S. Tischler, Michael Schlömann, Martin Mühling
Software Mentions: 1
Published: over 9 years ago

10.1186/1944-3277-10-4

Draft genome sequence of Bacillus azotoformans MEV2011, a (Co-) denitrifying strain unable to grow with oxygen
Cited by: 3
Author(s): Maja Hykkelbjerg Nielsen, Lars Schreiber, Kai Finster, Andreas Schramm
Software Mentions: 1
Published: almost 10 years ago

10.1186/s40793-015-0092-z

Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
Cited by: 14
Author(s): Shahid Manzoor, Bettina Müller, Adnan Niazi, Anna Schnürer, Erik Bongcam‐Rudloff
Software Mentions: 1
Published: about 9 years ago

10.1186/s40793-015-0099-5

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22T
Cited by: 16
Author(s): Kevin C. Y. Lee, Xochitl C. Morgan, Jean F. Power, Peter F. Dunfield, Curtis Huttenhower, Matthew B. Stott
Software Mentions: 1
Published: about 9 years ago

10.1186/s40793-016-0132-3

Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain
Cited by: 16
Author(s): Jerson Garita-Cambronero, Ana Palacio-Bielsa, Marı́a M. López, Jaime Cubero
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40793-016-0141-2

Draft genomic sequence of Nereida ignava CECT 5292T, a marine bacterium of the family Rhodobacteraceae
Cited by: 9
Author(s): David R. Arahal, María J. Pujalte, Lidia Rodrigo-Torres
Software Mentions: 1
Published: over 8 years ago

10.1186/s40793-016-0199-x

Complete genome sequence of Methanoculleus bourgensis strain MAB1, the syntrophic partner of mesophilic acetate-oxidising bacteria (SAOB)
Cited by: 40
Author(s): Shahid Manzoor, Anna Schnürer, Erik Bongcam‐Rudloff, Bettina Müller
Software Mentions: 1
Published: about 8 years ago

10.1186/s40793-017-0244-4

Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium
Cited by: 2
Author(s): Vanessa Jag, Anja Poehlein, Frank R. Bengelsdorf, Rolf Daniel, Peter Dürre
Software Mentions: 1
Published: over 7 years ago

10.3390/toxins7062159

Bioinformatics-Aided Venomics
Cited by: 36
Author(s): Quentin Kaas, David J. Craik
Software Mentions: 1
Published: over 9 years ago

10.3390/toxins7072494

Three Peptide Modulators of the Human Voltage-Gated Sodium Channel 1.7, an Important Analgesic Target, from the Venom of an Australian Tarantula
Cited by: 26
Author(s): Chun Yuen Chow, Ben Cristofori-Armstrong, Eivind A. B. Undheim, Glenn F. King, Lachlan D. Rash
Software Mentions: 1
Published: over 9 years ago

10.1186/1745-6215-11-88

A cluster randomised controlled trial of the community effectiveness of two interventions in rural Malawi to improve health care and to reduce maternal, newborn and infant mortality
Cited by: 74
Author(s): Sonia Lewycka, Charles Mwansambo, Peter N. Kazembe, Tambosi Phiri, Andrew Mganga, Mikey Rosato, Hilda Chapota, Florida Malamba, Stefania Vergnano, Marie‐Louise Newell, David Osrin, Anthony Costello
Software Mentions: 1
Published: about 14 years ago

10.1186/s13063-017-2381-x

Application of causal inference methods in the analyses of randomised controlled trials: a systematic review
Cited by: 12
Author(s): Ruth Farmer, Daphne‐Zacharenia Kounali, A. Sarah Walker, Jelena Savović, Alison Richards, Margaret T May, Deborah Ford
Software Mentions: 1
Published: almost 7 years ago

10.1128/mBio.00014-19

Identification of a Novel Deltavirus in Boa Constrictors
Cited by: 62
Author(s): Udo Hetzel, Leonóra Szirovicza, Teemu Smura, Barbara Prähauser, Olli Vapalahti, Anja Kipar, Jussi Hepojoki
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00118-17

Multidrug Resistance Salmonella Genomic Island 1 in a Morganella morganii subsp. morganii Human Clinical Isolate from France
Cited by: 34
Author(s): Eliette Schultz, Olivier Barraud, Jean Yves Madec, Marisa Haenni, Axel Cloeckaert, Marie-Cécile Ploy, Benoît Doublet
Software Mentions: 1
Published: over 7 years ago

10.1099/jgv.0.000880

Whole-genome sequences of Odocoileus hemionus deer adenovirus isolates from deer, moose and elk are highly conserved and support a new species in the genus Atadenovirus
Cited by: 13
Author(s): Myrna M. Miller, Todd E. Cornish, Terry E. Creekmore, Karen A. Fox, William W. Laegreid, Jennifer McKenna, Marce Vasquez, Leslie W. Woods
Software Mentions: 1
Published: about 7 years ago

10.1099/jgv.0.001196

Characterization of Triniti virus supports its reclassification in the family Peribunyaviridae
Cited by: 6
Author(s): Jaime Lima, Joaquim Pinto Nunes Neto, Karoline Silva Castro, Amélia Paes de Andrade Travassos da Rosa, Robert B. Tesh, Márcio Roberto Teixeira Nunes, Vsevolod L. Popov, Nikos Vasilakis, Hilda Guzmán, Steven G. Widen, Sandro Patroca da Silva, Daniele Barbosa de Almeida Medeiros, Jedson Ferreira Cardoso, Lívia Carício Martins, Raimunda do Socorro da Silva Azevedo, Pedro Fernando da Costa Vasconcelos, Jannifer Oliveira Chiang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12939-019-0957-7

Exploring the equity impact of a maternal and newborn health intervention: a qualitative study of participatory women’s groups in rural South Asia and Africa
Cited by: 17
Author(s): Joanna Morrison, David Osrin, Glyn Alcock, Kishwar Azad, Jyoti Bamjan, Bharat Budhathoki, Abdul Kuddus, Mahfuza Akter Mala, Dharma S Manandhar, Albert Nkhata, Shrijana Pathak, Tambosi Phiri, Suchitra Rath, Prasanta Tripathy, Anthony Costello, Tanja A. J. Houweling
Software Mentions: 1
Published: over 5 years ago

10.1155/2014/123058

Genome Sequencing of a Mung Bean Plant Growth Promoting Strain ofP. aeruginosawith Biocontrol Ability
Cited by: 12
Author(s): Devaraj Illakkiam, Manoharan Shankar, Paramasivan Ponraj, Jeyaprakash Rajendhran, Paramasamy Gunasekaran
Software Mentions: 1
Published: almost 11 years ago

10.22037/ijpr.2019.112339.13697

PEGylated Carbon Nanotubes Decorated with Silver Nanoparticles: Fabrication, Cell Cytotoxicity and Application in Photo Thermal Therapy
Cited by: 10
Author(s): Mohammad Ali Behnam, Farzin Emami, Zahra Sobhani
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13052-017-0430-4

Abstracts from the 23rd Italian congress of Cystic Fibrosis and the 13th National congress of Cystic Fibrosis Italian Society
Cited by: 1
Author(s): Annamaria Bevivino, Alessandra Coiana, Annalisa Fogazzi, Fabiana Timelli, Sandra Signorini, Marco Lucarelli, Patrizia Morelli, Rita Padoan, Barbara Giordani, Annalisa Amato, Fabio Majo, Gianluca Ferrari, Serena Quattrucci, L. Minicucci, Giovanna Floridia, G. Fornaro, Domenica Taruscio, Marco Salvatore, Manuela Seia, Silvia Pierandrei, Giovanna Blaconà, Valentina Salvati, Giovanni Sette, Giuseppe Cimino, Federica Sangiuolo, Adriana Eramo, Mirella Collura, Elisa Parisi, Annalisa Ferlisi, Gabriella Traverso, Marcella Bertolino, Lisa Termini, Maria A. Orlando, Caterina Di Girgenti, V. Pavone, Maria Antonietta Calamia, Maria G. Silvestro, Caterina Lo Piparo, Francesca Ficili, Carla Colombo, Elizabeth Tullis, Jane Davies, Charlotte M. McKee, Cynthia DeSouza, David A. Waltz, J. R. K. Savage, Marc Fisher, Rebecca Shilling, Sam Moskowitz, Sarah Robertson, Simon Tian, Jennifer L. Taylor‐Cousar, Steven M. Rowe, Elisa Beccia, Annalucia Carbone, Maria Favia, Stefano Castellani, Antonella Angiolillo, Valeria Casavola, Massimo Conese, Bruno Mario Cesana, Diego Falchetti, F Battistini, Elisabetta Bignamini, C. Braggion, N. Cirilli, Maria Cristina Lucanto, V. Lucidi, Antonio Manca, Valeria Raia, Novella Rotolo, Donatello Salvatore, Sonia Volpi, Erica Nazzari, Riccardo Guarise, Palmiro Mileto, Francesca Garbarino, Gianfranco Alicandro, Alberto Battezzati, Antonella Miriam Di Lullo, Marika Comegna, Felice Amato, Paola Iacotucci, Vincenzo Carnovale, Elena Cantone, Maurizio Iengo, Giuseppe Castaldo, Claudio Orlando, A. Casale, Angela Sepe, Fabiola De Gregorio, Antonia De Matteo, Alice Castaldo, Chiara Cimbalo, Antonella Tosco, Daniela Savi, M. Mordenti, Enea Bonci, P. Troiani, V. D'Alù, Paolo Rossi, M. Varchetta, T. Perelli, S. Bertasi, Paolo Palange, Lucia Tardino, Giuseppe Fabio Parisi, Anna Portale, Chiara Franzonello, Maria Papale, Salvatore Leonardi, Francesca Pennisi, Sabina Maria Bruno, Giulia Licciardello, Giampiero Ferraguti, Manuela Sterrantino, Giancarlo Testino, Roberto Buzzetti, Cecilia Surace, Valentina Sofia, Nicola Ullmann, Antonio Novelli, Adriano Angioni, Renato Liguori, Francesca Manzoni, Chiara Di Palma, Sabrina Maietta, Federica Zarrilli, Vito Terlizzi, Federico Alghisi, G. Tuccio, Valentina Tradati, E. Di Stefano, Patrizia Dato, Maria G. Sciarrabone, Carmela Fondacaro, Federico Cresta, Valentina Baglioni, Silvia Garuti, Isabella Buffoni, Francesca Landi, R. Casciaro, Daniela Girelli, Antonio Teri, Samantha Sottotetti, Arianna Biffi, Chiara Vignati, M. D’Accico, Anna Maraschini, Milena Arghittu, Giovanna Pizzamiglio, Elisa Cariani, Daniela Dolce, N. Ravenni, S. Campana, E. Camera, Carlo Castellani, Giovanni Taccetti, Eleonora Calderone, Roberto Bandettini, Chiara Degli Innocenti, Chiara Castellani, Eleonora Masi, M. Cavicchi, Béatrice Ferrari, Ramona Pezzotta, Piercarlo Poli, Serena Messali, Silvana Timpano, Erika Scaltriti, Stefano Pongolini, Simona Fiorentini, S. Bresci, Lorenzo Corsi, Beatrice Borchi, Annalisa Cavallo, Filippo Bartalesi, Massimo Pistolesi, Alessandro Bartoloni, Federica Arcoleo, Tiziana Pensabene, Giovanni Bacci, Federica Armanini, Ersilia Fiscarelli, Nicola Segata, Alessio Mengoni, Maria Vittoria Di Toppa, Nicoleta Laura Popa, Francesco Felicetti, Sonia Graziano, Riccardo Ciprandi, Rita Pescini, Guendalina Graffigna, Serena Barello, P. Catastini, Salvatore Masi, C. Braggion, Lucia Guarnuto, Emanuela Di Liberti, Valentina Patti, Massimo Luca Castellazzi, Valeria Daccò, Laura Claut, Matteo Giuliari, Luana Vicentini, Fausto Tilotta, Antonella Paciaroni, Sabino Della Sala, Cristina Guerzoni, Elisa Andreatta, Grazia Dinnella, Orazia M. Granata, Tommaso S. Aronica, Mimì Crapisi, Donatella Fogazza, Luca Alessi, Flavia Mulè, Marcello Vitaliti, Mariarosaria Maresi, Andrea Catzola, Laura Salvadori, Carmela Colangelo, Giovanni Marsicovetere, Michele D’Andria, Domenica Passarella, Carmela Genovese, Mari A. Orlando, Stefania Barrale, Maria R. Bonaccorso, Annalisa D’Arpa
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijerph120810171

Characterization of the Bacterial Community Naturally Present on Commercially Grown Basil Leaves: Evaluation of Sample Preparation Prior to Culture-Independent Techniques
Cited by: 15
Author(s): Siele Ceuppens, Stefanie Delbeke, Dieter De Coninck, Jolien Boussemaere, Nico Boon, Mieke Uyttendaele
Software Mentions: 1
Published: over 9 years ago

10.3390/ijerph15102170

Characterization of Histone Genes from the Bivalve Lucina Pectinata
Cited by: 3
Author(s): Ingrid M. Montes-Rodríguez, Yesenia Rodriguez‐Pou, Ricardo González‐Méndez, Juan López‐Garriga, Alexander J. Ropelewski, Carmen L. Cadilla
Software Mentions: 1
Published: about 6 years ago

10.3390/ijerph18052654

Lower Extremity Rehabilitation in Patients with Post-Stroke Sequelae through Virtual Reality Associated with Mirror Therapy
Cited by: 14
Author(s): Roxana Miclăuş, Nadinne Roman, Ramona Henter, Silviu Caloian
Software Mentions: 1
Published: over 3 years ago

10.1099/jmmcr.0.005096

A case of Vibrio vulnificus infection complicated with fulminant purpura: gene and biotype analysis of the pathogen
Cited by: 8
Author(s): Masatoshi Hori, Akifumi Nakayama, Daisuke Kitagawa, Hidetada Fukushima, Hideki Asai, Yasuyuki Kawai, Kazuo Okuchi
Software Mentions: 1
Published: over 7 years ago

10.7448/IAS.16.1.18589

Evaluating HIV prevention efforts using semiparametric regression models: results from a large cohort of women participating in an HIV prevention trial from KwaZulu-Natal, South Africa
Cited by: 1
Author(s): Handan Wand, Gita Ramjee
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms131013079

Pyrosequencing-Based Transcriptome Analysis of the Asian Rice Gall Midge Reveals Differential Response during Compatible and Incompatible Interaction
Cited by: 14
Author(s): Deepak K. Sinha, Javaregowda Nagaraju, Archana Tomar, J. S. Bentur, Suresh Nair
Software Mentions: 1
Published: about 12 years ago

10.3390/ijms14035694

Development and Validation of Single Nucleotide Polymorphisms (SNPs) Markers from Two Transcriptome 454-Runs of Turbot (Scophthalmus maximus) Using High-Throughput Genotyping
Cited by: 34
Author(s): Manuel Vera, J. Alvarez-Dios, Carlos Fernández, Carmen Bouza, Román Vilas, Paulino Martı́nez
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms17081315

De Novo Transcriptome Analysis of Differential Functional Gene Expression in Largemouth Bass (Micropterus salmoides) after Challenge with Nocardia seriolae
Cited by: 50
Author(s): Omkar Byadgi, Chi-Wen Chen, Pei-Chyi Wang, Ming‐An Tsai, Shih‐Chu Chen
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19030716

Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
Cited by: 101
Author(s): Wan-Lin Dong, Ruonan Wang, Na-Yao Zhang, Fan Wu, Min-Feng Fang, Zhong-Hu Li
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19041050

Comparative Plastid Genomes of Primula Species: Sequence Divergence and Phylogenetic Relationships
Cited by: 42
Author(s): Tao Ren, Yanci Yang, Tao Zhou, Zhan‐Lin Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19072107

Immune-Related Functional Differential Gene Expression in Koi Carp (Cyprinus carpio) after Challenge with Aeromonas sobria
Cited by: 17
Author(s): Omkar Byadgi, Yao-Chung Chen, Shun Maekawa, Pei-Chyi Wang, Shih‐Chu Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19124039

Evolutionary Analysis of Plastid Genomes of Seven Lonicera L. Species: Implications for Sequence Divergence and Phylogenetic Relationships
Cited by: 17
Author(s): Mi Li Liu, Wei Fan, Ning Wang, Peng Dong, Ting Ting Zhang, Ming Yue, Zhong Hu Li
Software Mentions: 1
Published: almost 6 years ago

10.2196/jmir.6841

Motivational Determinants of Exergame Participation for Older People in Assisted Living Facilities: Mixed-Methods Study
Cited by: 85
Author(s): Wytske Meekes, Emma Stanmore
Software Mentions: 1
Published: over 7 years ago

10.1186/1743-0003-9-19

Structures promoting research, training, and technology transfer in mobility: lessons learned from a visit to European centers
Cited by: 3
Author(s): Michael L. Boninger, Rachel E. Cowan, Benjamin J. Fregly
Software Mentions: 1
Published: almost 13 years ago

10.1186/1742-6405-5-19

Microbicides 2008 conference: From discovery to advocacy
Cited by: 15
Author(s): Gita Ramjee, Gustavo F. Doncel, Sanjay Mehendale, Elizabeth E. Tolley, Kim Dickson
Software Mentions: 1
Published: almost 17 years ago

10.18632/oncotarget.19005

Whole genome and transcriptome analysis reveal MALDI-TOF MS and SDS-PAGE have limited performance for the detection of the key outer membrane protein in carbapenem-resistant Klebsiella pneumoniae isolates
Cited by: 3
Author(s): Naina Adren Pinto, Roshan D’Souza, In Sik Hwang, Jah Yeon Choi, Yong Ha In, Hyung Soon Park, Choong‐Min Ryu, Dongeun Yong, Kyungwon Lee
Software Mentions: 1
Published: over 7 years ago

10.1155/2018/3832850

Development and Validation of Dummies and Human Models Used in Crash Test
Cited by: 19
Author(s): Tao Xu, Xiaoming Sheng, Tianyi Zhang, Huan Liu, Xiao Liang, Aili Ding
Software Mentions: 1
Published: about 6 years ago

10.1002/aps3.11271

New microsatellites for the Atacama Desert endemic Balsamocarpon brevifolium (Fabaceae)
Cited by: 1
Author(s): Gonzalo Ravest, Pedro León‐Lobos, Carlos Aguirre, J. M. Hernández, Gustavo Bolados, María H. Castro, Sérgio Silva, Patricio Hinrichsen
Software Mentions: 1
Published: over 5 years ago

10.1007/s00705-017-3419-9

Complete genome sequences of two novel autographiviruses infecting a bacterium from the Pseudomonas fluorescens group
Cited by: 7
Author(s): Grzegorz Nowicki, Karolina Walkowiak-Nowicka, Agata Zemleduch-Barylska, Anna Mleczko, Patryk Frąckowiak, Natalia Nowaczyk, Emilia Kozdrowska, Jakub Barylski
Software Mentions: 1
Published: over 7 years ago

10.1155/2017/4097425

The Draft Genome of the Non-Host-AssociatedMethanobrevibacter arboriphilusStrain DH1 Encodes a Large Repertoire of Adhesin-Like Proteins
Cited by: 5
Author(s): Anja Poehlein, Rolf Daniel, Henning Seedorf
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2105-9-433

Reranking candidate gene models with cross-species comparison for improved gene prediction
Cited by: 8
Author(s): Qian Liu, Koby Crammer, Fernando Pereira, David S. Roos
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2105-14-301

afterParty: turning raw transcriptomes into permanent resources
Cited by: 8
Author(s): Martin O. Jones, Mark Blaxter
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-13-S11-S9

Combining joint models for biomedical event extraction
Cited by: 29
Author(s): David McClosky, Sebastian Riedel, Mihai Surdeanu, Andrew McCallum, Christopher D. Manning
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-15-160

A resource-saving collective approach to biomedical semantic role labeling
Cited by: 4
Author(s): Richard Tzong-Han Tsai, Po Ting Lai
Software Mentions: 1
Published: over 10 years ago

10.1186/s12862-015-0380-7

Characterization of fossilized relatives of the White Spot Syndrome Virus in genomes of decapod crustaceans
Cited by: 12
Author(s): Andrey Rozenberg, Philipp Brand, Nicole T. Rivera, Florian Leese, Christoph D. Schubart
Software Mentions: 1
Published: over 9 years ago

10.1186/s12862-020-1581-2

Negative frequency dependent selection contributes to the maintenance of a global polymorphism in mitochondrial DNA
Cited by: 11
Author(s): Zorana Kurbalija Novičić, Ahmed Sayadi, Mihailo Jelić, Göran Arnqvist
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12862-017-1078-9

Species-specific genes under selection characterize the co-evolution of slavemaker and host lifestyles
Cited by: 12
Author(s): Barbara Feldmeyer, D. Elsner, Austin Alleman, Susanne Foitzik
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-14-178

Deep sequencing for de novo construction of a marine fish (Sparus aurata)transcriptome database with a large coverage of protein-coding transcripts
Cited by: 76
Author(s): Josep Àlvar Calduch-Giner, Azucena Bermejo-Nogales, Laura Benedito-Palos, Itziar Estensoro, Gabriel F. Ballester‐Lozano, Ariadna Sitjà‐Bobadilla, Jaume Pérez‐Sánchez
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-14-120

High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L
Cited by: 168
Author(s): Régine Delourme, Cyril Falentin, Berline Fopa Fomeju, Marie Boillot, Gilles Lassalle, Isabelle André, Jorge Duarte, Valérie Gauthier, Nicole Lucante, Amandine Marty, Maryline Pauchon, Jean-Philippe Pichon, Nicolas Ribière, Gwenn Trotoux, Philippe Blanchard, Nathalie Rivière, Jean‐Pierre Martinant, Jérôme Pauquet
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-12-206

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome
Cited by: 19
Author(s): Yajuan Zeng, Joann A. Conner, Peggy Ozias‐Akins
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-13-406

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective
Cited by: 36
Author(s): Aureliano Bombarely, Kieron D. Edwards, Juan Pablo Sanchez-Tamburrino, Lukas A. Mueller
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-15-468

Mitogenomic sequences effectively recover relationships within brush-footed butterflies (Lepidoptera: Nymphalidae)
Cited by: 49
Author(s): Li Hua Wu, Li Lin, David C. Lees, Yu Feng Hsu
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-12-424

Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin
Cited by: 115
Author(s): Luis Rodríguez‐Moreno, Víctor González, Andrej Benjak, María C. Martí, Pere Puigdomènech, Miguel A. Aranda, Jordi García-Más
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-017-4061-3

Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology
Cited by: 25
Author(s): Keiko Sasaki, Nobutaka Mitsuda, Kenji Nashima, Kyutaro Kishimoto, Yūichi Katayose, Hajime Kanamori, Akemi Ohmiya
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-018-4454-y

Glutamate synthases from conifers: gene structure and phylogenetic studies
Cited by: 11
Author(s): Ángel García‐Gutiérrez, Francisco M. Cánovas, Concepción Ávila
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-15-473

Genomic and phenotypic attributes of novel salinivibrios from stromatolites, sediment and water from a high altitude lake
Cited by: 39
Author(s): Marta Fabiana Gorriti, Glaecir Roseni Mundstock Dias, Luciane A. Chimetto, Amaro E. Trindade-Silva, Bruno Santana da Silva, Maria Gefé da Rosa Mesquita, Gustavo Bueno Gregoracci, Marı́a Eugenia Farı́as, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-017-3729-z

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages
Cited by: 22
Author(s): Deyvid Amgarten, Luciane Martins, Karen Cristina Lombardi, Luciana Principal Antunes, Ana Paula Silva de Souza, Gianlucca Gonçalves Nicastro, Elliott W. Kitajima, Ronaldo Bento Quaggio, Chris Upton, João Carlos Setúbal, da Silva
Software Mentions: 1
Published: over 7 years ago

Projects: bioconductor: MIRA

Papers Mentioning MIRA 856